I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 16 00:23:34 -12 2021 I: pbuilder-time-stamp: 1631795014 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-biopython_1.73+dfsg-1.dsc] I: copying [./python-biopython_1.73+dfsg.orig.tar.xz] I: copying [./python-biopython_1.73+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Jan 11 10:39:48 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-biopython_1.73+dfsg-1.dsc dpkg-source: info: extracting python-biopython in python-biopython-1.73+dfsg dpkg-source: info: unpacking python-biopython_1.73+dfsg.orig.tar.xz dpkg-source: info: unpacking python-biopython_1.73+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_mathml-qname.patch dpkg-source: info: applying privacy_breach.patch dpkg-source: info: applying reportlab3.5.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2219/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2219' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.LoUa9bCFuW/pbuilderrc_g1sb --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.LoUa9bCFuW/b1 --logfile b1/build.log python-biopython_1.73+dfsg-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink-sled9-arm64 4.4.0-186-generic #216-Ubuntu SMP Wed Jul 1 05:35:21 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 15 02:49 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/2219/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), dh-python, python-all-dev, python3-all-dev, python-numpy, python3-numpy, flex, python-reportlab, python3-reportlab, hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, ncbi-blast+, phylip, phyml, prank, probcons, python-mysqldb, python3-mysqldb, python-matplotlib, python3-matplotlib, python-pil, python3-pil, python-rdflib (>= 4), python3-rdflib, python-renderpm, python3-renderpm, python-psycopg2, python3-psycopg2, python-scipy, python3-scipy, python-setuptools, python3-setuptools, t-coffee, wise (>= 2.4.1-16) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python-all-dev; however: Package python-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on python-reportlab; however: Package python-reportlab is not installed. pbuilder-satisfydepends-dummy depends on python3-reportlab; however: Package python3-reportlab is not installed. pbuilder-satisfydepends-dummy depends on hevea; however: Package hevea is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on clustalo; however: Package clustalo is not installed. pbuilder-satisfydepends-dummy depends on clustalw; however: Package clustalw is not installed. pbuilder-satisfydepends-dummy depends on dialign; however: Package dialign is not installed. pbuilder-satisfydepends-dummy depends on dssp; however: Package dssp is not installed. pbuilder-satisfydepends-dummy depends on emboss; however: Package emboss is not installed. pbuilder-satisfydepends-dummy depends on fasttree; however: Package fasttree is not installed. pbuilder-satisfydepends-dummy depends on mafft; however: Package mafft is not installed. pbuilder-satisfydepends-dummy depends on muscle; however: Package muscle is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on phylip; however: Package phylip is not installed. pbuilder-satisfydepends-dummy depends on phyml; however: Package phyml is not installed. pbuilder-satisfydepends-dummy depends on prank; however: Package prank is not installed. pbuilder-satisfydepends-dummy depends on probcons; however: Package probcons is not installed. pbuilder-satisfydepends-dummy depends on python-mysqldb; however: Package python-mysqldb is not installed. pbuilder-satisfydepends-dummy depends on python3-mysqldb; however: Package python3-mysqldb is not installed. pbuilder-satisfydepends-dummy depends on python-matplotlib; however: Package python-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python-pil; however: Package python-pil is not installed. pbuilder-satisfydepends-dummy depends on python3-pil; however: Package python3-pil is not installed. pbuilder-satisfydepends-dummy depends on python-rdflib (>= 4); however: Package python-rdflib is not installed. pbuilder-satisfydepends-dummy depends on python3-rdflib; however: Package python3-rdflib is not installed. pbuilder-satisfydepends-dummy depends on python-renderpm; however: Package python-renderpm is not installed. pbuilder-satisfydepends-dummy depends on python3-renderpm; however: Package python3-renderpm is not installed. pbuilder-satisfydepends-dummy depends on python-psycopg2; however: Package python-psycopg2 is not installed. pbuilder-satisfydepends-dummy depends on python3-psycopg2; however: Package python3-psycopg2 is not installed. pbuilder-satisfydepends-dummy depends on python-scipy; however: Package python-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python-setuptools; however: Package python-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on t-coffee; however: Package t-coffee is not installed. pbuilder-satisfydepends-dummy depends on wise (>= 2.4.1-16); however: Package wise is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} clustalo{a} clustalw{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dialign{a} dssp{a} dwz{a} emboss{a} emboss-data{a} emboss-lib{a} fasttree{a} file{a} flex{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} fonts-lyx{a} gettext{a} gettext-base{a} ghostscript{a} groff-base{a} gsfonts{a} hevea{a} intltool-debian{a} libarchive-zip-perl{a} libargtable2-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas3{a} libboost-atomic1.67.0{a} libboost-program-options1.67.0{a} libboost-thread1.67.0{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcroco3{a} libcups2{a} libcupsimage2{a} libdbus-1-3{a} libedit2{a} libelf1{a} libevent-2.1-6{a} libevent-core-2.1-6{a} libevent-pthreads-2.1-6{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgd3{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgs9{a} libgs9-common{a} libgssapi-krb5-2{a} libharfbuzz-icu0{a} libharfbuzz0b{a} libhpdf-2.3.0{a} libhwloc-plugins{a} libhwloc5{a} libibverbs1{a} libice6{a} libicu63{a} libidn11{a} libijs-0.35{a} libimagequant0{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap-2.4-2{a} libldap-common{a} liblmdb0{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmariadb3{a} libmbedcrypto3{a} libmbedtls12{a} libmbedx509-0{a} libmpdec2{a} libncurses6{a} libnetpbm10{a} libnl-3-200{a} libnl-route-3-200{a} libnuma1{a} libopenjp2-7{a} libopenmpi3{a} libpaper-utils{a} libpaper1{a} libpciaccess0{a} libpipeline1{a} libpixman-1-0{a} libpmix2{a} libpng16-16{a} libpotrace0{a} libpq5{a} libptexenc1{a} libpython-all-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssl1.1{a} libsynctex2{a} libteckit0{a} libtexlua52{a} libtexlua53{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libwoff1{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libxxhash0{a} libzzip-0-13{a} lsb-base{a} m4{a} mafft{a} man-db{a} mariadb-common{a} mime-support{a} muscle{a} mysql-common{a} ncbi-blast+{a} ncbi-data{a} netpbm{a} ocaml-base-nox{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} phylip{a} phyml{a} po-debconf{a} poppler-data{a} prank{a} preview-latex-style{a} probcons{a} python{a} python-all{a} python-all-dev{a} python-backports.functools-lru-cache{a} python-cycler{a} python-dateutil{a} python-decorator{a} python-dev{a} python-isodate{a} python-kiwisolver{a} python-matplotlib{a} python-matplotlib-data{a} python-matplotlib2-data{a} python-minimal{a} python-mysqldb{a} python-numpy{a} python-pil{a} python-pkg-resources{a} python-psycopg2{a} python-pyparsing{a} python-rdflib{a} python-renderpm{a} python-reportlab{a} python-reportlab-accel{a} python-scipy{a} python-setuptools{a} python-six{a} python-subprocess32{a} python-tz{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-all{a} python3-all-dev{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-isodate{a} python3-kiwisolver{a} python3-lib2to3{a} python3-matplotlib{a} python3-minimal{a} python3-mysqldb{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-psycopg2{a} python3-pyparsing{a} python3-rdflib{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} t-coffee{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} ttf-bitstream-vera{a} ucf{a} wise{a} wise-data{a} x11-common{a} xdg-utils{a} The following packages are RECOMMENDED but will NOT be installed: amap-align blast2 curl dbus dialign-tx fonts-droid-fallback fsa ibverbs-providers javascript-common kalign krb5-locales libarchive-cpio-perl libcupsfilters1 libfile-mimeinfo-perl libfl-dev libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libnet-dbus-perl libopenmpi-dev libsasl2-modules libsoap-lite-perl libwww-perl libx11-protocol-perl libxml-simple-perl lmodern lynx mustang poa primer3 proda python-egenix-mxdatetime python-html5lib python-olefile python-sparqlwrapper python-tk python3-html5lib python3-olefile python3-sparqlwrapper python3-tk ruby shared-mime-info tex-gyre texlive-plain-generic tipa tk tm-align wget x11-utils x11-xserver-utils xauth xdg-user-dirs 0 packages upgraded, 270 newly installed, 0 to remove and 0 not upgraded. Need to get 310 MB of archives. After unpacking 1350 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 libpython2.7-minimal arm64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 python2.7-minimal arm64 2.7.16-2+deb10u1 [1292 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 python2-minimal arm64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 python-minimal arm64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 libreadline7 arm64 7.0-5 [134 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libpython2.7-stdlib arm64 2.7.16-2+deb10u1 [1890 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 python2.7 arm64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libpython2-stdlib arm64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 libpython-stdlib arm64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 python2 arm64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 python arm64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 flex arm64 2.6.4-6.2 [446 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 poppler-data all 0.4.9-2 [1473 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 libpython3.7-minimal arm64 3.7.3-2+deb10u2 [588 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 python3.7-minimal arm64 3.7.3-2+deb10u2 [1404 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 python3-minimal arm64 3.7.3-1 [36.6 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 libmpdec2 arm64 2.4.2-2 [77.7 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 libpython3.7-stdlib arm64 3.7.3-2+deb10u2 [1641 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 python3.7 arm64 3.7.3-2+deb10u2 [330 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 libpython3-stdlib arm64 3.7.3-1 [20.0 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 python3 arm64 3.7.3-1 [61.5 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 ucf all 3.0038+nmu1 [69.0 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 tex-common all 6.11 [53.1 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 libedit2 arm64 3.1-20181209-1 [91.2 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 libkrb5support0 arm64 1.17-3 [64.7 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 libk5crypto3 arm64 1.17-3 [122 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 libkrb5-3 arm64 1.17-3 [353 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 libgssapi-krb5-2 arm64 1.17-3 [150 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 openssh-client arm64 1:7.9p1-10+deb10u2 [757 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 libargtable2-0 arm64 13-1 [15.9 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 clustalo arm64 1.2.4-2 [231 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 clustalw arm64 2.1+lgpl-6 [256 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 67 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 70 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 71 http://deb.debian.org/debian buster/main arm64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 72 http://deb.debian.org/debian buster/main arm64 python3-distutils all 3.7.3-1 [142 kB] Get: 73 http://deb.debian.org/debian buster/main arm64 dh-python all 3.20190308 [99.3 kB] Get: 74 http://deb.debian.org/debian buster/main arm64 dialign arm64 2.2.1-10 [138 kB] Get: 75 http://deb.debian.org/debian buster/main arm64 libboost-program-options1.67.0 arm64 1.67.0-13+deb10u1 [346 kB] Get: 76 http://deb.debian.org/debian buster/main arm64 libboost-atomic1.67.0 arm64 1.67.0-13+deb10u1 [226 kB] Get: 77 http://deb.debian.org/debian buster/main arm64 libboost-thread1.67.0 arm64 1.67.0-13+deb10u1 [264 kB] Get: 78 http://deb.debian.org/debian buster/main arm64 dssp arm64 3.0.0-3+b1 [237 kB] Get: 79 http://deb.debian.org/debian buster/main arm64 libpng16-16 arm64 1.6.36-6 [287 kB] Get: 80 http://deb.debian.org/debian buster/main arm64 libfreetype6 arm64 2.9.1-3+deb10u1 [355 kB] Get: 81 http://deb.debian.org/debian buster/main arm64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 82 http://deb.debian.org/debian buster/main arm64 ttf-bitstream-vera all 1.10-8 [352 kB] Get: 83 http://deb.debian.org/debian buster/main arm64 fontconfig-config all 2.13.1-2 [280 kB] Get: 84 http://deb.debian.org/debian buster/main arm64 libfontconfig1 arm64 2.13.1-2 [343 kB] Get: 85 http://deb.debian.org/debian buster/main arm64 libjpeg62-turbo arm64 1:1.5.2-2+b1 [115 kB] Get: 86 http://deb.debian.org/debian buster/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get: 87 http://deb.debian.org/debian buster/main arm64 libwebp6 arm64 0.6.1-2 [233 kB] Get: 88 http://deb.debian.org/debian buster/main arm64 libtiff5 arm64 4.1.0+git191117-2~deb10u1 [259 kB] Get: 89 http://deb.debian.org/debian buster/main arm64 libxau6 arm64 1:1.0.8-1+b2 [19.3 kB] Get: 90 http://deb.debian.org/debian buster/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 91 http://deb.debian.org/debian buster/main arm64 libxcb1 arm64 1.13.1-2 [135 kB] Get: 92 http://deb.debian.org/debian buster/main arm64 libx11-data all 2:1.6.7-1 [298 kB] Get: 93 http://deb.debian.org/debian buster/main arm64 libx11-6 arm64 2:1.6.7-1 [735 kB] Get: 94 http://deb.debian.org/debian buster/main arm64 libxpm4 arm64 1:3.5.12-1 [43.9 kB] Get: 95 http://deb.debian.org/debian buster/main arm64 libgd3 arm64 2.2.5-5.2 [125 kB] Get: 96 http://deb.debian.org/debian buster/main arm64 libhpdf-2.3.0 arm64 2.3.0+dfsg-1 [351 kB] Get: 97 http://deb.debian.org/debian buster/main arm64 mysql-common all 5.8+1.0.5 [7324 B] Get: 98 http://deb.debian.org/debian buster/main arm64 mariadb-common all 1:10.3.23-0+deb10u1 [32.0 kB] Get: 99 http://deb.debian.org/debian buster/main arm64 libmariadb3 arm64 1:10.3.23-0+deb10u1 [161 kB] Get: 100 http://deb.debian.org/debian buster/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-1+deb10u1 [69.3 kB] Get: 101 http://deb.debian.org/debian buster/main arm64 libsasl2-2 arm64 2.1.27+dfsg-1+deb10u1 [105 kB] Get: 102 http://deb.debian.org/debian buster/main arm64 libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 103 http://deb.debian.org/debian buster/main arm64 libldap-2.4-2 arm64 2.4.47+dfsg-3+deb10u2 [216 kB] Get: 104 http://deb.debian.org/debian buster/main arm64 libpq5 arm64 11.7-0+deb10u1 [162 kB] Get: 105 http://deb.debian.org/debian buster/main arm64 emboss-lib arm64 6.6.0+dfsg-7+b1 [2645 kB] Get: 106 http://deb.debian.org/debian buster/main arm64 emboss-data all 6.6.0+dfsg-7 [61.1 MB] Get: 107 http://deb.debian.org/debian buster/main arm64 emboss arm64 6.6.0+dfsg-7+b1 [1017 kB] Get: 108 http://deb.debian.org/debian buster/main arm64 fasttree arm64 2.1.10-2 [168 kB] Get: 109 http://deb.debian.org/debian buster/main arm64 fonts-lmodern all 2.004.5-6 [4539 kB] Get: 110 http://deb.debian.org/debian buster/main arm64 fonts-lyx all 2.3.2-1 [199 kB] Get: 111 http://deb.debian.org/debian buster/main arm64 libgs9-common all 9.27~dfsg-2+deb10u3 [5136 kB] Get: 112 http://deb.debian.org/debian buster/main arm64 libavahi-common-data arm64 0.7-4+b1 [122 kB] Get: 113 http://deb.debian.org/debian buster/main arm64 libavahi-common3 arm64 0.7-4+b1 [53.5 kB] Get: 114 http://deb.debian.org/debian buster/main arm64 libdbus-1-3 arm64 1.12.20-0+deb10u1 [206 kB] Get: 115 http://deb.debian.org/debian buster/main arm64 libavahi-client3 arm64 0.7-4+b1 [56.8 kB] Get: 116 http://deb.debian.org/debian buster/main arm64 libcups2 arm64 2.2.10-6+deb10u3 [310 kB] Get: 117 http://deb.debian.org/debian buster/main arm64 libcupsimage2 arm64 2.2.10-6+deb10u3 [132 kB] Get: 118 http://deb.debian.org/debian buster/main arm64 libidn11 arm64 1.33-2.2 [113 kB] Get: 119 http://deb.debian.org/debian buster/main arm64 libijs-0.35 arm64 0.35-14 [17.9 kB] Get: 120 http://deb.debian.org/debian buster/main arm64 libjbig2dec0 arm64 0.16-1 [58.1 kB] Get: 121 http://deb.debian.org/debian buster/main arm64 liblcms2-2 arm64 2.9-3 [137 kB] Get: 122 http://deb.debian.org/debian buster/main arm64 libopenjp2-7 arm64 2.3.0-2+deb10u1 [148 kB] Get: 123 http://deb.debian.org/debian buster/main arm64 libpaper1 arm64 1.1.28 [21.1 kB] Get: 124 http://deb.debian.org/debian buster/main arm64 libgs9 arm64 9.27~dfsg-2+deb10u3 [2029 kB] Get: 125 http://deb.debian.org/debian buster/main arm64 ghostscript arm64 9.27~dfsg-2+deb10u3 [94.9 kB] Get: 126 http://deb.debian.org/debian buster/main arm64 gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.4 [3125 kB] Get: 127 http://deb.debian.org/debian buster/main arm64 libnetpbm10 arm64 2:10.0-15.3+b2 [79.1 kB] Get: 128 http://deb.debian.org/debian buster/main arm64 netpbm arm64 2:10.0-15.3+b2 [942 kB] Get: 129 http://deb.debian.org/debian buster/main arm64 libpaper-utils arm64 1.1.28 [18.0 kB] Get: 130 http://deb.debian.org/debian buster/main arm64 libkpathsea6 arm64 2018.20181218.49446-1 [164 kB] Get: 131 http://deb.debian.org/debian buster/main arm64 libptexenc1 arm64 2018.20181218.49446-1 [60.3 kB] Get: 132 http://deb.debian.org/debian buster/main arm64 libsynctex2 arm64 2018.20181218.49446-1 [77.8 kB] Get: 133 http://deb.debian.org/debian buster/main arm64 libtexlua52 arm64 2018.20181218.49446-1 [107 kB] Get: 134 http://deb.debian.org/debian buster/main arm64 libtexlua53 arm64 2018.20181218.49446-1 [118 kB] Get: 135 http://deb.debian.org/debian buster/main arm64 t1utils arm64 1.41-3 [59.7 kB] Get: 136 http://deb.debian.org/debian buster/main arm64 libbrotli1 arm64 1.0.7-2 [261 kB] Get: 137 http://deb.debian.org/debian buster/main arm64 libpixman-1-0 arm64 0.36.0-1 [436 kB] Get: 138 http://deb.debian.org/debian buster/main arm64 libxcb-render0 arm64 1.13.1-2 [108 kB] Get: 139 http://deb.debian.org/debian buster/main arm64 libxcb-shm0 arm64 1.13.1-2 [99.3 kB] Get: 140 http://deb.debian.org/debian buster/main arm64 libxext6 arm64 2:1.3.3-1+b2 [48.6 kB] Get: 141 http://deb.debian.org/debian buster/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB] Get: 142 http://deb.debian.org/debian buster/main arm64 libcairo2 arm64 1.16.0-4 [644 kB] Get: 143 http://deb.debian.org/debian buster/main arm64 libgraphite2-3 arm64 1.3.13-7 [75.8 kB] Get: 144 http://deb.debian.org/debian buster/main arm64 libharfbuzz0b arm64 2.3.1-1 [1155 kB] Get: 145 http://deb.debian.org/debian buster/main arm64 libharfbuzz-icu0 arm64 2.3.1-1 [834 kB] Get: 146 http://deb.debian.org/debian buster/main arm64 lsb-base all 10.2019051400 [28.4 kB] Get: 147 http://deb.debian.org/debian buster/main arm64 x11-common all 1:7.7+19 [251 kB] Get: 148 http://deb.debian.org/debian buster/main arm64 libice6 arm64 2:1.0.9-2 [52.0 kB] Get: 149 http://deb.debian.org/debian buster/main arm64 libpotrace0 arm64 1.15-1 [23.6 kB] Get: 150 http://deb.debian.org/debian buster/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get: 151 http://deb.debian.org/debian buster/main arm64 libteckit0 arm64 2.5.8+ds2-5 [284 kB] Get: 152 http://deb.debian.org/debian buster/main arm64 libwoff1 arm64 1.0.2-1 [40.7 kB] Get: 153 http://deb.debian.org/debian buster/main arm64 libxt6 arm64 1:1.1.5-1+b3 [175 kB] Get: 154 http://deb.debian.org/debian buster/main arm64 libxmu6 arm64 2:1.1.2-2+b3 [57.8 kB] Get: 155 http://deb.debian.org/debian buster/main arm64 libxaw7 arm64 2:1.0.13-1+b2 [167 kB] Get: 156 http://deb.debian.org/debian buster/main arm64 libxi6 arm64 2:1.7.9-1 [79.0 kB] Get: 157 http://deb.debian.org/debian buster/main arm64 libxxhash0 arm64 0.6.5-2 [7684 B] Get: 158 http://deb.debian.org/debian buster/main arm64 libzzip-0-13 arm64 0.13.62-3.2 [55.5 kB] Get: 159 http://deb.debian.org/debian buster/main arm64 texlive-binaries arm64 2018.20181218.49446-1 [8464 kB] Get: 160 http://deb.debian.org/debian buster/main arm64 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get: 161 http://deb.debian.org/debian buster/main arm64 texlive-base all 2018.20190227-2 [19.7 MB] Get: 162 http://deb.debian.org/debian buster/main arm64 ocaml-base-nox arm64 4.05.0-11 [655 kB] Get: 163 http://deb.debian.org/debian buster/main arm64 hevea all 2.32-2 [904 kB] Get: 164 http://deb.debian.org/debian buster/main arm64 libgfortran5 arm64 8.3.0-6 [298 kB] Get: 165 http://deb.debian.org/debian buster/main arm64 libblas3 arm64 3.8.0-2 [100 kB] Get: 166 http://deb.debian.org/debian buster/main arm64 libevent-2.1-6 arm64 2.1.8-stable-4 [150 kB] Get: 167 http://deb.debian.org/debian buster/main arm64 libevent-core-2.1-6 arm64 2.1.8-stable-4 [112 kB] Get: 168 http://deb.debian.org/debian buster/main arm64 libevent-pthreads-2.1-6 arm64 2.1.8-stable-4 [47.7 kB] Get: 169 http://deb.debian.org/debian buster/main arm64 libexpat1-dev arm64 2.2.6-2+deb10u1 [128 kB] Get: 170 http://deb.debian.org/debian buster/main arm64 libltdl7 arm64 2.4.6-9 [389 kB] Get: 171 http://deb.debian.org/debian buster/main arm64 libpciaccess0 arm64 0.14-1 [51.0 kB] Get: 172 http://deb.debian.org/debian buster/main arm64 ocl-icd-libopencl1 arm64 2.2.12-2 [37.4 kB] Get: 173 http://deb.debian.org/debian buster/main arm64 libnuma1 arm64 2.0.12-1 [25.6 kB] Get: 174 http://deb.debian.org/debian buster/main arm64 libhwloc5 arm64 1.11.12-3 [97.9 kB] Get: 175 http://deb.debian.org/debian buster/main arm64 libhwloc-plugins arm64 1.11.12-3 [16.9 kB] Get: 176 http://deb.debian.org/debian buster/main arm64 libnl-3-200 arm64 3.4.0-1 [54.9 kB] Get: 177 http://deb.debian.org/debian buster/main arm64 libnl-route-3-200 arm64 3.4.0-1 [134 kB] Get: 178 http://deb.debian.org/debian buster/main arm64 libibverbs1 arm64 22.1-1 [47.8 kB] Get: 179 http://deb.debian.org/debian buster/main arm64 libimagequant0 arm64 2.12.2-1.1 [30.3 kB] Get: 180 http://deb.debian.org/debian buster/main arm64 libjs-jquery all 3.3.1~dfsg-3 [332 kB] Get: 181 http://deb.debian.org/debian buster/main arm64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get: 182 http://deb.debian.org/debian buster/main arm64 liblapack3 arm64 3.8.0-2 [1489 kB] Get: 183 http://deb.debian.org/debian buster/main arm64 liblmdb0 arm64 0.9.22-1 [40.3 kB] Get: 184 http://deb.debian.org/debian buster/main arm64 libmbedcrypto3 arm64 2.16.0-1 [202 kB] Get: 185 http://deb.debian.org/debian buster/main arm64 libmbedx509-0 arm64 2.16.0-1 [90.5 kB] Get: 186 http://deb.debian.org/debian buster/main arm64 libmbedtls12 arm64 2.16.0-1 [123 kB] Get: 187 http://deb.debian.org/debian buster/main arm64 libpmix2 arm64 3.1.2-3 [455 kB] Get: 188 http://deb.debian.org/debian buster/main arm64 libopenmpi3 arm64 3.1.3-11 [1996 kB] Get: 189 http://deb.debian.org/debian buster/main arm64 libpython2.7 arm64 2.7.16-2+deb10u1 [958 kB] Get: 190 http://deb.debian.org/debian buster/main arm64 libpython2.7-dev arm64 2.7.16-2+deb10u1 [31.5 MB] Get: 191 http://deb.debian.org/debian buster/main arm64 libpython2-dev arm64 2.7.16-1 [20.9 kB] Get: 192 http://deb.debian.org/debian buster/main arm64 libpython-dev arm64 2.7.16-1 [20.9 kB] Get: 193 http://deb.debian.org/debian buster/main arm64 libpython-all-dev arm64 2.7.16-1 [1064 B] Get: 194 http://deb.debian.org/debian buster/main arm64 libpython3.7 arm64 3.7.3-2+deb10u2 [1371 kB] Get: 195 http://deb.debian.org/debian buster/main arm64 libpython3.7-dev arm64 3.7.3-2+deb10u2 [2380 kB] Get: 196 http://deb.debian.org/debian buster/main arm64 libpython3-dev arm64 3.7.3-1 [20.1 kB] Get: 197 http://deb.debian.org/debian buster/main arm64 libpython3-all-dev arm64 3.7.3-1 [1068 B] Get: 198 http://deb.debian.org/debian buster/main arm64 libwebpdemux2 arm64 0.6.1-2 [86.8 kB] Get: 199 http://deb.debian.org/debian buster/main arm64 libwebpmux3 arm64 0.6.1-2 [95.4 kB] Get: 200 http://deb.debian.org/debian buster/main arm64 mafft arm64 7.407-2 [873 kB] Get: 201 http://deb.debian.org/debian buster/main arm64 muscle arm64 1:3.8.1551-2 [228 kB] Get: 202 http://deb.debian.org/debian buster/main arm64 ncbi-data all 6.1.20170106+dfsg1-0+deb10u2 [3552 kB] Get: 203 http://deb.debian.org/debian buster/main arm64 ncbi-blast+ arm64 2.8.1-1+deb10u1 [9554 kB] Get: 204 http://deb.debian.org/debian buster/main arm64 openmpi-common all 3.1.3-11 [165 kB] Get: 205 http://deb.debian.org/debian buster/main arm64 openmpi-bin arm64 3.1.3-11 [199 kB] Get: 206 http://deb.debian.org/debian buster/main arm64 phylip arm64 1:3.697+dfsg-1 [851 kB] Get: 207 http://deb.debian.org/debian buster/main arm64 phyml arm64 3:3.3.20180621-2 [1561 kB] Get: 208 http://deb.debian.org/debian buster/main arm64 prank arm64 0.0.170427+dfsg-2 [324 kB] Get: 209 http://deb.debian.org/debian buster/main arm64 preview-latex-style all 11.91-2 [201 kB] Get: 210 http://deb.debian.org/debian buster/main arm64 probcons arm64 1.12-12 [111 kB] Get: 211 http://deb.debian.org/debian buster/main arm64 python-all arm64 2.7.16-1 [1044 B] Get: 212 http://deb.debian.org/debian buster/main arm64 python2.7-dev arm64 2.7.16-2+deb10u1 [296 kB] Get: 213 http://deb.debian.org/debian buster/main arm64 python2-dev arm64 2.7.16-1 [1216 B] Get: 214 http://deb.debian.org/debian buster/main arm64 python-dev arm64 2.7.16-1 [1192 B] Get: 215 http://deb.debian.org/debian buster/main arm64 python-all-dev arm64 2.7.16-1 [1068 B] Get: 216 http://deb.debian.org/debian buster/main arm64 python-backports.functools-lru-cache all 1.5-3 [6704 B] Get: 217 http://deb.debian.org/debian buster/main arm64 python-six all 1.12.0-1 [15.7 kB] Get: 218 http://deb.debian.org/debian buster/main arm64 python-cycler all 0.10.0-1 [7448 B] Get: 219 http://deb.debian.org/debian buster/main arm64 python-dateutil all 2.7.3-3 [76.8 kB] Get: 220 http://deb.debian.org/debian buster/main arm64 python-decorator all 4.3.0-1.1 [14.4 kB] Get: 221 http://deb.debian.org/debian buster/main arm64 python-isodate all 0.6.0-1 [24.8 kB] Get: 222 http://deb.debian.org/debian buster/main arm64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 223 http://deb.debian.org/debian buster/main arm64 python-kiwisolver arm64 1.0.1-2+b1 [64.0 kB] Get: 224 http://deb.debian.org/debian buster/main arm64 python-matplotlib2-data all 2.2.3-6 [4124 kB] Get: 225 http://deb.debian.org/debian buster/main arm64 python-pyparsing all 2.2.0+dfsg1-2 [89.5 kB] Get: 226 http://deb.debian.org/debian buster/main arm64 python-tz all 2019.1-1 [33.6 kB] Get: 227 http://deb.debian.org/debian buster/main arm64 python-numpy arm64 1:1.16.2-1 [1975 kB] Get: 228 http://deb.debian.org/debian buster/main arm64 python-subprocess32 arm64 3.5.3-1 [29.6 kB] Get: 229 http://deb.debian.org/debian buster/main arm64 python-matplotlib arm64 2.2.3-6 [5033 kB] Get: 230 http://deb.debian.org/debian buster/main arm64 python-matplotlib-data all 3.0.2-2 [4138 kB] Get: 231 http://deb.debian.org/debian buster/main arm64 python-mysqldb arm64 1.3.10-2 [58.9 kB] Get: 232 http://deb.debian.org/debian buster/main arm64 python-pil arm64 5.4.1-2+deb10u2 [381 kB] Get: 233 http://deb.debian.org/debian buster/main arm64 python-psycopg2 arm64 2.7.7-1 [159 kB] Get: 234 http://deb.debian.org/debian buster/main arm64 python-rdflib all 4.2.2-2 [260 kB] Get: 235 http://deb.debian.org/debian buster/main arm64 python-renderpm arm64 3.5.13-1+deb10u1 [71.1 kB] Get: 236 http://deb.debian.org/debian buster/main arm64 python-reportlab-accel arm64 3.5.13-1+deb10u1 [39.4 kB] Get: 237 http://deb.debian.org/debian buster/main arm64 python-reportlab all 3.5.13-1+deb10u1 [545 kB] Get: 238 http://deb.debian.org/debian buster/main arm64 python-scipy arm64 1.1.0-7 [9327 kB] Get: 239 http://deb.debian.org/debian buster/main arm64 python-setuptools all 40.8.0-1 [382 kB] Get: 240 http://deb.debian.org/debian buster/main arm64 python3-all arm64 3.7.3-1 [1068 B] Get: 241 http://deb.debian.org/debian buster/main arm64 python3.7-dev arm64 3.7.3-2+deb10u2 [509 kB] Get: 242 http://deb.debian.org/debian buster/main arm64 python3-dev arm64 3.7.3-1 [1264 B] Get: 243 http://deb.debian.org/debian buster/main arm64 python3-all-dev arm64 3.7.3-1 [1064 B] Get: 244 http://deb.debian.org/debian buster/main arm64 python3-six all 1.12.0-1 [15.7 kB] Get: 245 http://deb.debian.org/debian buster/main arm64 python3-cycler all 0.10.0-1 [7556 B] Get: 246 http://deb.debian.org/debian buster/main arm64 python3-dateutil all 2.7.3-3 [64.5 kB] Get: 247 http://deb.debian.org/debian buster/main arm64 python3-decorator all 4.3.0-1.1 [14.5 kB] Get: 248 http://deb.debian.org/debian buster/main arm64 python3-isodate all 0.6.0-1 [24.9 kB] Get: 249 http://deb.debian.org/debian buster/main arm64 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 250 http://deb.debian.org/debian buster/main arm64 python3-kiwisolver arm64 1.0.1-2+b1 [62.9 kB] Get: 251 http://deb.debian.org/debian buster/main arm64 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get: 252 http://deb.debian.org/debian buster/main arm64 python3-numpy arm64 1:1.16.2-1 [1991 kB] Get: 253 http://deb.debian.org/debian buster/main arm64 python3-matplotlib arm64 3.0.2-2 [5310 kB] Get: 254 http://deb.debian.org/debian buster/main arm64 python3-mysqldb arm64 1.3.10-2 [55.9 kB] Get: 255 http://deb.debian.org/debian buster/main arm64 python3-pil arm64 5.4.1-2+deb10u2 [382 kB] Get: 256 http://deb.debian.org/debian buster/main arm64 python3-psycopg2 arm64 2.7.7-1 [158 kB] Get: 257 http://deb.debian.org/debian buster/main arm64 python3-rdflib all 4.2.2-2 [258 kB] Get: 258 http://deb.debian.org/debian buster/main arm64 python3-renderpm arm64 3.5.13-1+deb10u1 [71.4 kB] Get: 259 http://deb.debian.org/debian buster/main arm64 python3-reportlab-accel arm64 3.5.13-1+deb10u1 [34.8 kB] Get: 260 http://deb.debian.org/debian buster/main arm64 python3-reportlab all 3.5.13-1+deb10u1 [541 kB] Get: 261 http://deb.debian.org/debian buster/main arm64 python3-scipy arm64 1.1.0-7 [9306 kB] Get: 262 http://deb.debian.org/debian buster/main arm64 python3-setuptools all 40.8.0-1 [306 kB] Get: 263 http://deb.debian.org/debian buster/main arm64 t-coffee arm64 12.00.7fb08c2-4 [1417 kB] Get: 264 http://deb.debian.org/debian buster/main arm64 texlive-fonts-recommended all 2018.20190227-2 [5228 kB] Get: 265 http://deb.debian.org/debian buster/main arm64 texlive-latex-base all 2018.20190227-2 [984 kB] Get: 266 http://deb.debian.org/debian buster/main arm64 texlive-latex-recommended all 2018.20190227-2 [15.2 MB] Get: 267 http://deb.debian.org/debian buster/main arm64 texlive-pictures all 2018.20190227-2 [8201 kB] Get: 268 http://deb.debian.org/debian buster/main arm64 texlive-latex-extra all 2018.20190227-2 [12.3 MB] Get: 269 http://deb.debian.org/debian buster/main arm64 wise-data all 2.4.1-21 [109 kB] Get: 270 http://deb.debian.org/debian buster/main arm64 wise arm64 2.4.1-21 [962 kB] Fetched 310 MB in 26s (12.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_arm64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../04-libpipeline1_1.5.1-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_arm64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:arm64. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_arm64.deb ... Unpacking libpython2.7-minimal:arm64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_arm64.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. 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Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20631 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_arm64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... 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Selecting previously unselected package flex. Preparing to unpack .../3-flex_2.6.4-6.2_arm64.deb ... Unpacking flex (2.6.4-6.2) ... Selecting previously unselected package poppler-data. Preparing to unpack .../4-poppler-data_0.4.9-2_all.deb ... Unpacking poppler-data (0.4.9-2) ... Selecting previously unselected package libpython3.7-minimal:arm64. Preparing to unpack .../5-libpython3.7-minimal_3.7.3-2+deb10u2_arm64.deb ... Unpacking libpython3.7-minimal:arm64 (3.7.3-2+deb10u2) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../6-python3.7-minimal_3.7.3-2+deb10u2_arm64.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u2) ... Setting up libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Setting up libpython3.7-minimal:arm64 (3.7.3-2+deb10u2) ... Setting up libexpat1:arm64 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21603 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.7.3-1_arm64.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package libmpdec2:arm64. Preparing to unpack .../libmpdec2_2.4.2-2_arm64.deb ... Unpacking libmpdec2:arm64 (2.4.2-2) ... Selecting previously unselected package libpython3.7-stdlib:arm64. Preparing to unpack .../libpython3.7-stdlib_3.7.3-2+deb10u2_arm64.deb ... Unpacking libpython3.7-stdlib:arm64 (3.7.3-2+deb10u2) ... Selecting previously unselected package python3.7. Preparing to unpack .../python3.7_3.7.3-2+deb10u2_arm64.deb ... Unpacking python3.7 (3.7.3-2+deb10u2) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../libpython3-stdlib_3.7.3-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22015 files and directories currently installed.) Preparing to unpack .../000-python3_3.7.3-1_arm64.deb ... Unpacking python3 (3.7.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package ucf. Preparing to unpack .../002-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package tex-common. Preparing to unpack .../003-tex-common_6.11_all.deb ... Unpacking tex-common (6.11) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../005-libmagic1_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.19.8.1-9_arm64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libedit2:arm64. Preparing to unpack .../008-libedit2_3.1-20181209-1_arm64.deb ... Unpacking libedit2:arm64 (3.1-20181209-1) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../009-libkeyutils1_1.6-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6-6) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../010-libkrb5support0_1.17-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.17-3) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../011-libk5crypto3_1.17-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.17-3) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../012-libkrb5-3_1.17-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.17-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../013-libgssapi-krb5-2_1.17-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.17-3) ... Selecting previously unselected package openssh-client. 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I: Building the package I: Running cd /build/python-biopython-1.73+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package python-biopython dpkg-buildpackage: info: source version 1.73+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with python2,python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-biopython-1.73+dfsg' dh_auto_clean pybuild --clean -i python{version} -p 2.7 I: pybuild base:217: python2.7 setup.py clean running clean removing '/build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it pybuild --clean -i python{version} -p 3.7 I: pybuild base:217: python3.7 setup.py clean running clean removing '/build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; cd Doc && make distclean make[2]: Entering directory '/build/python-biopython-1.73+dfsg/Doc' make -C install make[3]: Entering directory '/build/python-biopython-1.73+dfsg/Doc/install' pdflatex Installation.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./Installation.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 52. No file Installation.aux. (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) LaTeX Warning: Reference `sec:windows_install' on page 1 undefined on input lin e 108. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [3] [4] [5] [6] LaTeX Warning: Reference `sec:is_working' on page 7 undefined on input line 460 . [7] LaTeX Warning: Reference `sec:unix_install' on page 8 undefined on input line 5 37. Overfull \hbox (9.0224pt too wide) in paragraph at lines 540--541 []\OT1/cmr/m/n/10 For Python 2.6 we cur-rently use Mi-crosoft's free VC++ 2008 Ex-press Edi-tion from [][]$\OT1/cmtt/m/n/10 http : / / www . microsoft . LaTeX Warning: Reference `sec:is_working' on page 8 undefined on input line 558 . Overfull \hbox (27.57379pt too wide) in paragraph at lines 563--565 [][]\OT1/cmtt/m/n/10 PYTHONPATH []\OT1/cmr/m/n/10 with some-thing like [][]\OT1 /cmtt/m/n/10 export PYTHONPATH = $PYTHONPATH':/directory/where/you/put/Biopytho n' [8] (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) Overfull \hbox (9.6602pt too wide) in paragraph at lines 600--601 []\OT1/cmr/m/n/10 NCBI Stan-dalone BLAST, which can used with the [][]\OT1/cmtt /m/n/10 Bio.Blast []\OT1/cmr/m/n/10 mod-ule and parsed with the [][]\OT1/cmtt/m /n/10 Bio.SearchIO [9] [10] (./Installation.aux) Package rerunfilecheck Warning: File `Installation.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) Output written on Installation.pdf (10 pages, 143811 bytes). Transcript written on Installation.log. pdflatex Installation.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./Installation.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 52. (./Installation.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./Installation.out) (./Installation.out) (./Installation.toc) [1{/var/lib/texm f/fonts/map/pdftex/updmap/pdftex.map}] [2] [3] [4] [5] [6] [7] Overfull \hbox (9.0224pt too wide) in paragraph at lines 540--541 []\OT1/cmr/m/n/10 For Python 2.6 we cur-rently use Mi-crosoft's free VC++ 2008 Ex-press Edi-tion from [][]$\OT1/cmtt/m/n/10 http : / / www . microsoft . [8] Overfull \hbox (27.57379pt too wide) in paragraph at lines 563--565 [][]\OT1/cmtt/m/n/10 PYTHONPATH []\OT1/cmr/m/n/10 with some-thing like [][]\OT1 /cmtt/m/n/10 export PYTHONPATH = $PYTHONPATH':/directory/where/you/put/Biopytho n' (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) Overfull \hbox (9.6602pt too wide) in paragraph at lines 600--601 []\OT1/cmr/m/n/10 NCBI Stan-dalone BLAST, which can used with the [][]\OT1/cmtt /m/n/10 Bio.Blast []\OT1/cmr/m/n/10 mod-ule and parsed with the [][]\OT1/cmtt/m /n/10 Bio.SearchIO [9] [10] (./Installation.aux) LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) Output written on Installation.pdf (10 pages, 149556 bytes). Transcript written on Installation.log. pdflatex Installation.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./Installation.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 52. (./Installation.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./Installation.out) (./Installation.out) (./Installation.toc) [1{/var/lib/texm f/fonts/map/pdftex/updmap/pdftex.map}] [2] [3] [4] [5] [6] [7] Overfull \hbox (9.0224pt too wide) in paragraph at lines 540--541 []\OT1/cmr/m/n/10 For Python 2.6 we cur-rently use Mi-crosoft's free VC++ 2008 Ex-press Edi-tion from [][]$\OT1/cmtt/m/n/10 http : / / www . microsoft . [8] Overfull \hbox (27.57379pt too wide) in paragraph at lines 563--565 [][]\OT1/cmtt/m/n/10 PYTHONPATH []\OT1/cmr/m/n/10 with some-thing like [][]\OT1 /cmtt/m/n/10 export PYTHONPATH = $PYTHONPATH':/directory/where/you/put/Biopytho n' (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) Overfull \hbox (9.6602pt too wide) in paragraph at lines 600--601 []\OT1/cmr/m/n/10 NCBI Stan-dalone BLAST, which can used with the [][]\OT1/cmtt /m/n/10 Bio.Blast []\OT1/cmr/m/n/10 mod-ule and parsed with the [][]\OT1/cmtt/m /n/10 Bio.SearchIO [9] [10] (./Installation.aux) ) (see the transcript file for additional information) Output written on Installation.pdf (10 pages, 149702 bytes). Transcript written on Installation.log. hevea -fix Installation.tex Exclude comment 'comment' ./Installation.tex:67: Warning: Suppressing nested a element ./Installation.tex:67: Warning: Suppressing nested a element ./Installation.tex:108: Warning: Undefined label: 'sec:windows_install' ./Installation.tex:114: Warning: Suppressing nested a element ./Installation.tex:114: Warning: Suppressing nested a element ./Installation.tex:140: Warning: Suppressing nested a element ./Installation.tex:140: Warning: Suppressing nested a element ./Installation.tex:218: Warning: Suppressing nested a element ./Installation.tex:218: Warning: Suppressing nested a element ./Installation.tex:230: Warning: Suppressing nested a element ./Installation.tex:230: Warning: Suppressing nested a element ./Installation.tex:255: Warning: Suppressing nested a element ./Installation.tex:255: Warning: Suppressing nested a element ./Installation.tex:314: Warning: Suppressing nested a element ./Installation.tex:314: Warning: Suppressing nested a element ./Installation.tex:317: Warning: Suppressing nested a element ./Installation.tex:317: Warning: Suppressing nested a element ./Installation.tex:387: Warning: Suppressing nested a element ./Installation.tex:387: Warning: Suppressing nested a element ./Installation.tex:400: Warning: Suppressing nested a element ./Installation.tex:400: Warning: Suppressing nested a element ./Installation.tex:406: Warning: Suppressing nested a element ./Installation.tex:406: Warning: Suppressing nested a element ./Installation.tex:413: Warning: Suppressing nested a element ./Installation.tex:413: Warning: Suppressing nested a element ./Installation.tex:419: Warning: Suppressing nested a element ./Installation.tex:419: Warning: Suppressing nested a element ./Installation.tex:421: Warning: Suppressing nested a element ./Installation.tex:421: Warning: Suppressing nested a element ./Installation.tex:430: Warning: '_' occurring outside math mode ./Installation.tex:456: Warning: Suppressing nested a element ./Installation.tex:456: Warning: Suppressing nested a element ./Installation.tex:460: Warning: Undefined label: 'sec:is_working' ./Installation.tex:467: Warning: Suppressing nested a element ./Installation.tex:467: Warning: Suppressing nested a element ./Installation.tex:497: Warning: Suppressing nested a element ./Installation.tex:497: Warning: Suppressing nested a element ./Installation.tex:516: Warning: Suppressing nested a element ./Installation.tex:516: Warning: Suppressing nested a element ./Installation.tex:535: Warning: '_' occurring outside math mode ./Installation.tex:537: Warning: Undefined label: 'sec:unix_install' ./Installation.tex:540: Warning: Suppressing nested a element ./Installation.tex:540: Warning: Suppressing nested a element ./Installation.tex:548: Warning: Suppressing nested a element ./Installation.tex:548: Warning: Suppressing nested a element ./Installation.tex:556: Warning: Suppressing nested a element ./Installation.tex:556: Warning: Suppressing nested a element ./Installation.tex:558: Warning: Undefined label: 'sec:is_working' ./Installation.tex:561: Warning: '_' occurring outside math mode ./Installation.tex:609: Warning: Suppressing nested a element ./Installation.tex:609: Warning: Suppressing nested a element HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Installation.tex:67: Warning: Suppressing nested a element ./Installation.tex:67: Warning: Suppressing nested a element ./Installation.tex:114: Warning: Suppressing nested a element ./Installation.tex:114: Warning: Suppressing nested a element ./Installation.tex:140: Warning: Suppressing nested a element ./Installation.tex:140: Warning: Suppressing nested a element ./Installation.tex:218: Warning: Suppressing nested a element ./Installation.tex:218: Warning: Suppressing nested a element ./Installation.tex:230: Warning: Suppressing nested a element ./Installation.tex:230: Warning: Suppressing nested a element ./Installation.tex:255: Warning: Suppressing nested a element ./Installation.tex:255: Warning: Suppressing nested a element ./Installation.tex:314: Warning: Suppressing nested a element ./Installation.tex:314: Warning: Suppressing nested a element ./Installation.tex:317: Warning: Suppressing nested a element ./Installation.tex:317: Warning: Suppressing nested a element ./Installation.tex:387: Warning: Suppressing nested a element ./Installation.tex:387: Warning: Suppressing nested a element ./Installation.tex:400: Warning: Suppressing nested a element ./Installation.tex:400: Warning: Suppressing nested a element ./Installation.tex:406: Warning: Suppressing nested a element ./Installation.tex:406: Warning: Suppressing nested a element ./Installation.tex:413: Warning: Suppressing nested a element ./Installation.tex:413: Warning: Suppressing nested a element ./Installation.tex:419: Warning: Suppressing nested a element ./Installation.tex:419: Warning: Suppressing nested a element ./Installation.tex:421: Warning: Suppressing nested a element ./Installation.tex:421: Warning: Suppressing nested a element ./Installation.tex:430: Warning: '_' occurring outside math mode ./Installation.tex:456: Warning: Suppressing nested a element ./Installation.tex:456: Warning: Suppressing nested a element ./Installation.tex:467: Warning: Suppressing nested a element ./Installation.tex:467: Warning: Suppressing nested a element ./Installation.tex:497: Warning: Suppressing nested a element ./Installation.tex:497: Warning: Suppressing nested a element ./Installation.tex:516: Warning: Suppressing nested a element ./Installation.tex:516: Warning: Suppressing nested a element ./Installation.tex:535: Warning: '_' occurring outside math mode ./Installation.tex:540: Warning: Suppressing nested a element ./Installation.tex:540: Warning: Suppressing nested a element ./Installation.tex:548: Warning: Suppressing nested a element ./Installation.tex:548: Warning: Suppressing nested a element ./Installation.tex:556: Warning: Suppressing nested a element ./Installation.tex:556: Warning: Suppressing nested a element ./Installation.tex:561: Warning: '_' occurring outside math mode ./Installation.tex:609: Warning: Suppressing nested a element ./Installation.tex:609: Warning: Suppressing nested a element Fixpoint reached in 2 step(s) hevea -fix -text Installation.tex Exclude comment 'comment' ./Installation.tex:55: Warning: tt_mode is an empty style ./Installation.tex:61: Warning: No date given ./Installation.tex:430: Warning: '_' occurring outside math mode ./Installation.tex:535: Warning: '_' occurring outside math mode ./Installation.tex:561: Warning: '_' occurring outside math mode HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Installation.tex:55: Warning: tt_mode is an empty style ./Installation.tex:61: Warning: No date given ./Installation.tex:430: Warning: '_' occurring outside math mode ./Installation.tex:535: Warning: '_' occurring outside math mode ./Installation.tex:561: Warning: '_' occurring outside math mode Fixpoint reached in 2 step(s) make[3]: Leaving directory '/build/python-biopython-1.73+dfsg/Doc/install' ( for f in install ; do make clean -C $f ; done ) make[3]: Entering directory '/build/python-biopython-1.73+dfsg/Doc/install' rm -f Installation.aux rm -f Installation.log rm -f Installation.out rm -f Installation.toc rm -f Installation.haux rm -f Installation.htoc make[3]: Leaving directory '/build/python-biopython-1.73+dfsg/Doc/install' rm -f Tutorial.aux rm -f Tutorial.toc rm -f Tutorial.log rm -f Tutorial.out rm -f Tutorial.haux rm -f Tutorial.htoc rm -f biopdb_faq.aux rm -f biopdb_faq.log rm -f biopdb_faq.out rm -f Tutorial/*.aux ( for f in install ; do make distclean -C $f ; done ) make[3]: Entering directory '/build/python-biopython-1.73+dfsg/Doc/install' rm -f Installation.aux rm -f Installation.log rm -f Installation.out rm -f Installation.toc rm -f Installation.haux rm -f Installation.htoc rm -f Installation.pdf rm -f Installation.txt rm -f Installation.html make[3]: Leaving directory '/build/python-biopython-1.73+dfsg/Doc/install' rm -f biopdb_faq.pdf rm -f Tutorial.pdf rm -f Tutorial.html rm -f Tutorial.txt rm -f *_motif.gif #output from hacha make[2]: Leaving directory '/build/python-biopython-1.73+dfsg/Doc' rm -f Doc/install/Installation.pdf rm -f Doc/install/Installation.txt rm -f Doc/install/Installation.html rm -f Doc/Tutorial.pdf Doc/biopdb_faq.pdf rm -f Doc/Tutorial/*.aux rm -rf biopython.egg-info rm -rf .pybuild if [ -d Tests_avoid ] ; then \ mv Tests_avoid/* Tests ; \ rmdir Tests_avoid ; \ fi rm -rf debian/tmp_tests make[1]: Leaving directory '/build/python-biopython-1.73+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python-biopython.substvars debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python-biopython-sql.substvars debian/python3-biopython-sql.substvars debian/files rm -fr -- debian/python-biopython/ debian/tmp/ debian/python3-biopython/ debian/python-biopython-doc/ debian/python-biopython-sql/ debian/python3-biopython-sql/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build --with python2,python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 2.7 I: pybuild base:217: python2.7 setup.py config running config pybuild --configure -i python{version} -p 3.7 I: pybuild base:217: python3.7 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/python-biopython-1.73+dfsg' dh_auto_build pybuild --build -i python{version} -p 2.7 I: pybuild base:217: /usr/bin/python setup.py build running build running build_py creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/triefind.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/pairwise2.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/kNN.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/bgzf.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/_utils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/SeqRecord.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/SeqFeature.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/Seq.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/NaiveBayes.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/MaxEntropy.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/MarkovModel.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/LogisticRegression.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/Index.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/File.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align copying Bio/Align/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align copying Bio/Align/AlignInfo.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Alphabet copying Bio/Alphabet/Reduced.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Alphabet copying Bio/Alphabet/IUPAC.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Alphabet creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Application copying Bio/Application/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Application creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast copying Bio/Blast/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast copying Bio/Blast/Record.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast copying Bio/Blast/Applications.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/CAPS creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign copying Bio/codonalign/codonalphabet.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign copying Bio/codonalign/chisq.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Compass copying Bio/Compass/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Compass creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Crystal copying Bio/Crystal/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Crystal creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data copying Bio/Data/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data copying Bio/Data/SCOPData.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data copying Bio/Data/IUPACData.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data copying Bio/Data/CodonTable.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/FSSP copying Bio/FSSP/fssp_rec.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/FSSP copying Bio/FSSP/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/FSSP copying Bio/FSSP/FSSPTools.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/FSSP creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank copying Bio/GenBank/utils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank copying Bio/GenBank/Record.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Geo copying Bio/Geo/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Geo copying Bio/Geo/Record.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Geo creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM copying Bio/HMM/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM copying Bio/HMM/Utilities.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM copying Bio/HMM/Trainer.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG copying Bio/KEGG/REST.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Compound creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Enzyme creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Gene creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Map creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/mmtf creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/KGML creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Medline copying Bio/Medline/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Medline creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs copying Bio/motifs/transfac.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs copying Bio/motifs/thresholds.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs copying Bio/motifs/minimal.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs copying Bio/motifs/meme.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs copying Bio/motifs/matrix.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs copying Bio/motifs/mast.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs copying Bio/motifs/alignace.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs copying Bio/motifs/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/applications creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/jaspar creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus copying Bio/Nexus/StandardData.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NMR copying Bio/NMR/xpktools.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NMR copying Bio/NMR/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NMR creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/Rep copying Bio/PDB/vectors.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/mmcifio.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Vector.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Structure.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Selection.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Residue.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/PSEA.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/PDBList.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Model.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Entity.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Dice.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/DSSP.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Chain.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Atom.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Utils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction copying Bio/Restriction/RanaConfig.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP copying Bio/SCOP/Des.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/ParserSupport.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/NCBIStandalone.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_legacy creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/InterproscanIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/_convert.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Statistics copying Bio/Statistics/lowess.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Statistics copying Bio/Statistics/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Statistics creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SubsMat copying Bio/SubsMat/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SubsMat creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SVDSuperimposer creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/QCPSuperimposer copying Bio/PDB/QCPSuperimposer/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/QCPSuperimposer creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SwissProt creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/TogoWS creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/_io.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniGene creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniProt creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Wise copying Bio/Wise/psw.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Wise copying Bio/Wise/dnal.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Wise copying Bio/Wise/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Wise creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/_py3k copying Bio/_py3k/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/_py3k creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL copying BioSQL/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL copying BioSQL/Loader.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL copying BioSQL/DBUtils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL copying BioSQL/BioSeq.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Affy copying Bio/Affy/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Affy copying Bio/Affy/CelFile.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Affy creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree copying Bio/KDTree/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree copying Bio/KDTree/KDTree.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/phenotype copying Bio/phenotype/phen_micro.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/phenotype copying Bio/phenotype/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/phenotype running egg_info creating biopython.egg-info writing requirements to biopython.egg-info/requires.txt writing biopython.egg-info/PKG-INFO writing top-level names to biopython.egg-info/top_level.txt writing dependency_links to biopython.egg-info/dependency_links.txt writing manifest file 'biopython.egg-info/SOURCES.txt' reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution writing manifest file 'biopython.egg-info/SOURCES.txt' copying Bio/cpairwise2module.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/trie.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/trie.h -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/triemodule.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/Align/_aligners.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs copying Bio/Nexus/cnexus.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus copying Bio/PDB/kdtrees.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/QCPSuperimposer copying Bio/Cluster/cluster.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster copying Bio/Cluster/cluster.h -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster copying Bio/Cluster/clustermodule.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster copying Bio/KDTree/KDTree.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree copying Bio/KDTree/KDTree.h -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree copying Bio/KDTree/KDTreemodule.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree copying Bio/KDTree/Neighbor.h -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree running build_ext building 'Bio.Align._aligners' extension creating build creating build/temp.linux-arm64-2.7 creating build/temp.linux-arm64-2.7/Bio creating build/temp.linux-arm64-2.7/Bio/Align aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/Align/_aligners.c -o build/temp.linux-arm64-2.7/Bio/Align/_aligners.o Bio/Align/_aligners.c: In function 'PathGenerator_length': Bio/Align/_aligners.c:701:22: warning: 'count' may be used uninitialized in this function [-Wmaybe-uninitialized] self->length = length; ~~~~~~~~~~~~~^~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/Bio/Align/_aligners.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/_aligners.so building 'Bio.cpairwise2' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/cpairwise2module.c -o build/temp.linux-arm64-2.7/Bio/cpairwise2module.o In file included from /usr/include/python2.7/Python.h:103, from Bio/cpairwise2module.c:14: Bio/cpairwise2module.c: In function 'cpairwise2__make_score_matrix_fast': /usr/include/python2.7/listobject.h:62:58: warning: 'py_trace_row' may be used uninitialized in this function [-Wmaybe-uninitialized] #define PyList_SET_ITEM(op, i, v) (((PyListObject *)(op))->ob_item[i] = (v)) ^~ Bio/cpairwise2module.c:343:34: note: 'py_trace_row' was declared here PyObject *py_score_row, *py_trace_row; ^~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/Bio/cpairwise2module.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/cpairwise2.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-arm64-2.7/Bio/Nexus aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/Nexus/cnexus.c -o build/temp.linux-arm64-2.7/Bio/Nexus/cnexus.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/Bio/Nexus/cnexus.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/cnexus.so building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension creating build/temp.linux-arm64-2.7/Bio/PDB creating build/temp.linux-arm64-2.7/Bio/PDB/QCPSuperimposer aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-arm64-2.7/Bio/PDB/QCPSuperimposer/qcprotmodule.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/Bio/PDB/QCPSuperimposer/qcprotmodule.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/QCPSuperimposer/qcprotmodule.so building 'Bio.motifs._pwm' extension creating build/temp.linux-arm64-2.7/Bio/motifs aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/motifs/_pwm.c -o build/temp.linux-arm64-2.7/Bio/motifs/_pwm.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/Bio/motifs/_pwm.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/_pwm.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-arm64-2.7/Bio/Cluster aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/Cluster/cluster.c -o build/temp.linux-arm64-2.7/Bio/Cluster/cluster.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/Cluster/clustermodule.c -o build/temp.linux-arm64-2.7/Bio/Cluster/clustermodule.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/Bio/Cluster/cluster.o build/temp.linux-arm64-2.7/Bio/Cluster/clustermodule.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster/_cluster.so building 'Bio.PDB.kdtrees' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/PDB/kdtrees.c -o build/temp.linux-arm64-2.7/Bio/PDB/kdtrees.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/Bio/PDB/kdtrees.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/kdtrees.so building 'Bio.KDTree._CKDTree' extension creating build/temp.linux-arm64-2.7/Bio/KDTree aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/KDTree/KDTree.c -o build/temp.linux-arm64-2.7/Bio/KDTree/KDTree.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-arm64-2.7/Bio/KDTree/KDTreemodule.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/Bio/KDTree/KDTree.o build/temp.linux-arm64-2.7/Bio/KDTree/KDTreemodule.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree/_CKDTree.so building 'Bio.trie' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python2.7 -c Bio/triemodule.c -o build/temp.linux-arm64-2.7/Bio/triemodule.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python2.7 -c Bio/trie.c -o build/temp.linux-arm64-2.7/Bio/trie.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/Bio/triemodule.o build/temp.linux-arm64-2.7/Bio/trie.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/trie.so pybuild --build -i python{version} -p 3.7 I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/triefind.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/pairwise2.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/kNN.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/bgzf.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/_utils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/SeqRecord.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/SeqFeature.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/Seq.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/NaiveBayes.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/MaxEntropy.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/MarkovModel.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/LogisticRegression.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/Index.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/File.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align copying Bio/Align/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align copying Bio/Align/AlignInfo.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Alphabet copying Bio/Alphabet/Reduced.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Alphabet copying Bio/Alphabet/IUPAC.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Alphabet creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Application copying Bio/Application/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Application creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast copying Bio/Blast/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast copying Bio/Blast/Record.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast copying Bio/Blast/Applications.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/CAPS creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign copying Bio/codonalign/codonalphabet.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign copying Bio/codonalign/chisq.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Compass copying Bio/Compass/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Compass creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Crystal copying Bio/Crystal/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Crystal creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data copying Bio/Data/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data copying Bio/Data/SCOPData.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data copying Bio/Data/IUPACData.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data copying Bio/Data/CodonTable.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/FSSP copying Bio/FSSP/fssp_rec.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/FSSP copying Bio/FSSP/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/FSSP copying Bio/FSSP/FSSPTools.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/FSSP creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank copying Bio/GenBank/utils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank copying Bio/GenBank/Record.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Geo copying Bio/Geo/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Geo copying Bio/Geo/Record.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Geo creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM copying Bio/HMM/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM copying Bio/HMM/Utilities.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM copying Bio/HMM/Trainer.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG copying Bio/KEGG/REST.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Compound creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Enzyme creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Gene creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Map creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/mmtf creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/KGML creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Medline copying Bio/Medline/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Medline creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs copying Bio/motifs/transfac.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs copying Bio/motifs/thresholds.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs copying Bio/motifs/minimal.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs copying Bio/motifs/meme.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs copying Bio/motifs/matrix.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs copying Bio/motifs/mast.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs copying Bio/motifs/alignace.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs copying Bio/motifs/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/applications creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/jaspar creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus copying Bio/Nexus/StandardData.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/NMR copying Bio/NMR/xpktools.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/NMR copying Bio/NMR/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/NMR creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/Rep copying Bio/PDB/vectors.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/mmcifio.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Vector.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Structure.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Selection.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Residue.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/PSEA.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/PDBList.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Model.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Entity.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Dice.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/DSSP.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Chain.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Atom.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Utils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction copying Bio/Restriction/RanaConfig.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP copying Bio/SCOP/Des.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/ParserSupport.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/NCBIStandalone.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_legacy creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/InterproscanIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/_convert.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Statistics copying Bio/Statistics/lowess.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Statistics copying Bio/Statistics/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Statistics creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SubsMat copying Bio/SubsMat/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SubsMat creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SVDSuperimposer creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/QCPSuperimposer copying Bio/PDB/QCPSuperimposer/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/QCPSuperimposer creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SwissProt creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/TogoWS creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/_io.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniGene creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniProt creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Wise copying Bio/Wise/psw.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Wise copying Bio/Wise/dnal.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Wise copying Bio/Wise/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Wise creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/_py3k copying Bio/_py3k/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/_py3k creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL copying BioSQL/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL copying BioSQL/Loader.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL copying BioSQL/DBUtils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL copying BioSQL/BioSeq.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Affy copying Bio/Affy/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Affy copying Bio/Affy/CelFile.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Affy creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree copying Bio/KDTree/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree copying Bio/KDTree/KDTree.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/phenotype copying Bio/phenotype/phen_micro.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/phenotype copying Bio/phenotype/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/phenotype running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution writing manifest file 'biopython.egg-info/SOURCES.txt' copying Bio/cpairwise2module.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/trie.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/trie.h -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/triemodule.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/Align/_aligners.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs copying Bio/Nexus/cnexus.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus copying Bio/PDB/kdtrees.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/QCPSuperimposer copying Bio/Cluster/cluster.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster copying Bio/Cluster/cluster.h -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster copying Bio/Cluster/clustermodule.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster copying Bio/KDTree/KDTree.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree copying Bio/KDTree/KDTree.h -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree copying Bio/KDTree/KDTreemodule.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree copying Bio/KDTree/Neighbor.h -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree running build_ext building 'Bio.Align._aligners' extension creating build/temp.linux-arm64-3.7 creating build/temp.linux-arm64-3.7/Bio creating build/temp.linux-arm64-3.7/Bio/Align aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c Bio/Align/_aligners.c -o build/temp.linux-arm64-3.7/Bio/Align/_aligners.o Bio/Align/_aligners.c: In function 'PathGenerator_length': Bio/Align/_aligners.c:701:22: warning: 'count' may be used uninitialized in this function [-Wmaybe-uninitialized] self->length = length; ~~~~~~~~~~~~~^~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/Bio/Align/_aligners.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/_aligners.cpython-37m-aarch64-linux-gnu.so building 'Bio.cpairwise2' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c Bio/cpairwise2module.c -o build/temp.linux-arm64-3.7/Bio/cpairwise2module.o In file included from /usr/include/python3.7m/Python.h:108, from Bio/cpairwise2module.c:14: Bio/cpairwise2module.c: In function 'cpairwise2__make_score_matrix_fast': /usr/include/python3.7m/listobject.h:73:58: warning: 'py_trace_row' may be used uninitialized in this function [-Wmaybe-uninitialized] #define PyList_SET_ITEM(op, i, v) (((PyListObject *)(op))->ob_item[i] = (v)) ^~ Bio/cpairwise2module.c:343:34: note: 'py_trace_row' was declared here PyObject *py_score_row, *py_trace_row; ^~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/Bio/cpairwise2module.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/cpairwise2.cpython-37m-aarch64-linux-gnu.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-arm64-3.7/Bio/Nexus aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c Bio/Nexus/cnexus.c -o build/temp.linux-arm64-3.7/Bio/Nexus/cnexus.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/Bio/Nexus/cnexus.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/cnexus.cpython-37m-aarch64-linux-gnu.so building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension creating build/temp.linux-arm64-3.7/Bio/PDB creating build/temp.linux-arm64-3.7/Bio/PDB/QCPSuperimposer aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-arm64-3.7/Bio/PDB/QCPSuperimposer/qcprotmodule.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/Bio/PDB/QCPSuperimposer/qcprotmodule.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-37m-aarch64-linux-gnu.so building 'Bio.motifs._pwm' extension creating build/temp.linux-arm64-3.7/Bio/motifs aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c Bio/motifs/_pwm.c -o build/temp.linux-arm64-3.7/Bio/motifs/_pwm.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/Bio/motifs/_pwm.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/_pwm.cpython-37m-aarch64-linux-gnu.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-arm64-3.7/Bio/Cluster aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c Bio/Cluster/cluster.c -o build/temp.linux-arm64-3.7/Bio/Cluster/cluster.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c Bio/Cluster/clustermodule.c -o build/temp.linux-arm64-3.7/Bio/Cluster/clustermodule.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/Bio/Cluster/cluster.o build/temp.linux-arm64-3.7/Bio/Cluster/clustermodule.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster/_cluster.cpython-37m-aarch64-linux-gnu.so building 'Bio.PDB.kdtrees' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c Bio/PDB/kdtrees.c -o build/temp.linux-arm64-3.7/Bio/PDB/kdtrees.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/Bio/PDB/kdtrees.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/kdtrees.cpython-37m-aarch64-linux-gnu.so building 'Bio.KDTree._CKDTree' extension creating build/temp.linux-arm64-3.7/Bio/KDTree aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c Bio/KDTree/KDTree.c -o build/temp.linux-arm64-3.7/Bio/KDTree/KDTree.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-arm64-3.7/Bio/KDTree/KDTreemodule.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/Bio/KDTree/KDTree.o build/temp.linux-arm64-3.7/Bio/KDTree/KDTreemodule.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree/_CKDTree.cpython-37m-aarch64-linux-gnu.so building 'Bio.trie' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python3.7m -c Bio/triemodule.c -o build/temp.linux-arm64-3.7/Bio/triemodule.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python3.7m -c Bio/trie.c -o build/temp.linux-arm64-3.7/Bio/trie.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/Bio/triemodule.o build/temp.linux-arm64-3.7/Bio/trie.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/trie.cpython-37m-aarch64-linux-gnu.so cd Doc && make make[2]: Entering directory '/build/python-biopython-1.73+dfsg/Doc' hevea -fix Tutorial.tex Exclude comment 'comment' ./Tutorial/chapter_introduction.tex:110: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:114: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:115: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:116: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_introduction.tex:117: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_introduction.tex:118: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_introduction.tex:119: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_introduction.tex:237: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_introduction.tex:250: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_introduction.tex:292: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_introduction.tex:292: Warning: Undefined label: 'sec:converting-alignments' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:advanced' ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_quick_start.tex:35: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_quick_start.tex:49: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'chapter:swiss_prot' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_quick_start.tex:76: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_quick_start.tex:83: Warning: Undefined label: 'sec:connecting-with-biological-databases' ./Tutorial/chapter_quick_start.tex:149: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_quick_start.tex:149: Warning: Undefined label: 'chapter:Bio.AlignIO' ./Tutorial/chapter_quick_start.tex:154: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:162: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:163: Warning: Undefined label: 'chapter:swiss_prot' ./Tutorial/chapter_quick_start.tex:173: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:SeqRecord' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_objects.tex:137: Warning: Undefined label: 'sec:mutable-seq' ./Tutorial/chapter_seq_objects.tex:207: 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label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:296: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:528: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:632: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_seq_annot.tex:640: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:676: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:679: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_seq_annot.tex:833: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:841: Warning: Undefined label: 'sec:FASTQ-slicing-off-primer' ./Tutorial/chapter_seq_annot.tex:842: Warning: Undefined label: 'sec:FASTQ-slicing-off-adaptor' ./Tutorial/chapter_seq_annot.tex:855: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:quick-start' ./Tutorial/chapter_seqio.tex:4: 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occurring outside math mode ./Tutorial/chapter_seqio.tex:374: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:374: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:375: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_seqio.tex:451: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_seqio.tex:451: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:456: Warning: Undefined label: 'chapter:swiss_prot' ./Tutorial/chapter_seqio.tex:491: Warning: Undefined label: 'SeqIO:to_dict' ./Tutorial/chapter_seqio.tex:497: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:501: Warning: Undefined label: 'sec:SeqIO-index-db' ./Tutorial/chapter_seqio.tex:504: Warning: Undefined label: 'sec:SeqIO-indexing-discussion' ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:514: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:588: Warning: Undefined label: 'sec:fasta-parsing' ./Tutorial/chapter_seqio.tex:704: Warning: Undefined label: 'sec:fastq-indexing' ./Tutorial/chapter_seqio.tex:725: Warning: Undefined label: 'seq:seqio-todict-functionkey' ./Tutorial/chapter_seqio.tex:787: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_seqio.tex:869: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1097: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1139: Warning: Undefined label: 'sec:SeqIO-fastq-conversion' ./Tutorial/chapter_seqio.tex:1139: Warning: Undefined label: 'sec:SeqIO-fasta-qual-conversion' ./Tutorial/chapter_seqio.tex:1154: Warning: Undefined label: 'sec:seq-reverse-complement' 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Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1855: Warning: Undefined label: 'sec:pairwise-examples' ./Tutorial/chapter_align.tex:1982: Warning: Undefined citation: 'kent2002' ./Tutorial/chapter_blast.tex:18: Warning: Undefined label: 'chapter:searchio' ./Tutorial/chapter_blast.tex:58: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:119: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_blast.tex:124: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:146: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:155: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:164: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:192: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:236: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:268: Warning: Undefined label: 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label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:345: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_pdb.tex:18: Warning: Undefined label: 'problem structures' ./Tutorial/chapter_pdb.tex:207: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:216: Warning: Undefined label: 'problem structures' ./Tutorial/chapter_pdb.tex:353: Warning: Undefined label: 'hetero problems' ./Tutorial/chapter_pdb.tex:398: Warning: Undefined label: 'point mutations' ./Tutorial/chapter_pdb.tex:415: Warning: Undefined label: 'disordered atoms' ./Tutorial/chapter_pdb.tex:540: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:586: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:769: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:870: Warning: Undefined citation: 'golub1989' ./Tutorial/chapter_pdb.tex:898: Warning: Undefined citation: 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occurring outside math mode ./Tutorial/chapter_graphics.tex:467: Warning: Undefined label: 'sec:gd_top_down' ./Tutorial/chapter_graphics.tex:557: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:557: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:562: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:571: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_graphics.tex:574: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_graphics.tex:576: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_graphics.tex:671: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:671: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:678: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:919: Warning: Undefined citation: 'jupe2012' ./Tutorial/chapter_phenotype.tex:229: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_cookbook.tex:58: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:146: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_cookbook.tex:192: Warning: Undefined label: 'sec:translation' ./Tutorial/chapter_cookbook.tex:197: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_cookbook.tex:317: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_cookbook.tex:415: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:429: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:449: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_cookbook.tex:597: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:600: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_cookbook.tex:750: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_cookbook.tex:772: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_cookbook.tex:774: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_cookbook.tex:788: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:855: Warning: Undefined label: 'sec:translation' ./Tutorial/chapter_cookbook.tex:967: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_cookbook.tex:984: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_cookbook.tex:1343: Warning: Undefined label: 'chapter:Bio.AlignIO' ./Tutorial/chapter_cookbook.tex:1346: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1350: Warning: Undefined label: 'chapter:Bio.AlignIO' ./Tutorial/chapter_cookbook.tex:1360: Warning: Undefined label: 'sec:consensus' ./Tutorial/chapter_cookbook.tex:1361: Warning: Undefined label: 'sec:pssm' ./Tutorial/chapter_cookbook.tex:1362: Warning: Undefined label: 'sec:getting_info_content' ./Tutorial/chapter_cookbook.tex:1363: Warning: Undefined label: 'sec:sub_matrix' ./Tutorial/chapter_cookbook.tex:1369: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1470: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1470: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1497: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1516: Warning: Undefined label: 'sec:freq_table' ./Tutorial/chapter_cookbook.tex:1570: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1579: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1579: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1603: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_cookbook.tex:1603: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1701: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_testing.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_testing.tex:49: Warning: Undefined label: 'section:doctest' ./Tutorial/chapter_testing.tex:409: Warning: Undefined label: 'section:doctest' ./Tutorial/chapter_advanced.tex:163: Warning: Undefined label: 'sec:freq_table' ./Tutorial/chapter_advanced.tex:223: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:31: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_contributing.tex:37: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:84: Warning: Undefined label: 'sec:regr_test' ./Tutorial/chapter_contributing.tex:100: Warning: Undefined label: 'sec:regr_test' ./Tutorial/chapter_appendix.tex:88: Warning: Undefined label: 'sec:SeqIO_compressed' HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial/chapter_seq_annot.tex:282: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:280: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:362: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:374: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:374: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:884: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:268: Warning: Undefined label: 'sec:parsing-blast-deprecated' ./Tutorial/chapter_entrez.tex:1035: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1038: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1126: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1126: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:345: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:769: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:974: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:203: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:203: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:203: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:254: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:254: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:301: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:301: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:327: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:384: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:384: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:464: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:464: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:557: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:557: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:671: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:671: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:229: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:1346: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1470: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1470: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1570: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1579: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1579: Warning: '_' occurring outside math mode ./Tutorial/chapter_testing.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_advanced.tex:223: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:37: Warning: '_' occurring outside math mode HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial/chapter_seq_annot.tex:282: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:280: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:362: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:374: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:374: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:884: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:268: Warning: Undefined label: 'sec:parsing-blast-deprecated' ./Tutorial/chapter_entrez.tex:1035: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1038: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1126: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1126: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:345: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:769: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:974: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:203: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:203: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:203: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:254: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:254: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:301: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:301: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:327: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:384: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:384: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:464: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:464: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:557: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:557: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:671: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:671: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:229: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:1346: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1470: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1470: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1570: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1579: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1579: Warning: '_' occurring outside math mode ./Tutorial/chapter_testing.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_advanced.tex:223: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:37: Warning: '_' occurring outside math mode Fixpoint reached in 3 step(s) hevea -fix -text Tutorial.tex Exclude comment 'comment' ./Tutorial.tex:68: Warning: tt_mode is an empty style ./Tutorial.tex:95: Warning: Application of '\'' on 'n' failed ./Tutorial.htoc:359: Warning: Application of '\"' on 'i' failed ./Tutorial/chapter_quick_start.tex:78: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:78: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:88: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:123: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:394: Warning: Command not found: \downarrow ./Tutorial/chapter_seq_annot.tex:121: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:140: Warning: line too long 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mode ./Tutorial/chapter_searchio.tex:31: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:696: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:728: Warning: line too long ./Tutorial/chapter_searchio.tex:730: Warning: line too long ./Tutorial/chapter_searchio.tex:883: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:961: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:930: Warning: line too long ./Tutorial/chapter_entrez.tex:1035: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1038: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1126: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1126: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:1: Warning: line too long ./Tutorial/chapter_uniprot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:29: Warning: line too long ./Tutorial/chapter_uniprot.tex:38: Warning: line too long ./Tutorial/chapter_uniprot.tex:84: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:84: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:345: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:446: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:446: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:495: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1: Warning: line too long ./Tutorial/chapter_pdb.tex:220: Warning: Image in text ./Tutorial/chapter_pdb.tex:769: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:974: Warning: '_' occurring outside math mode ./Tutorial/chapter_phylo.tex:104: Warning: Image in text ./Tutorial/chapter_phylo.tex:199: Warning: Image in text ./Tutorial/chapter_phylo.tex:345: Warning: line too long ./Tutorial/chapter_phylo.tex:359: Warning: Image in text ./Tutorial/chapter_phylo.tex:387: Warning: Image in text ./Tutorial/chapter_phylo.tex:421: Warning: Image in text ./Tutorial/chapter_phylo.tex:454: Warning: Image in text ./Tutorial/chapter_phylo.tex:471: Warning: Image in text ./Tutorial/chapter_phylo.tex:473: Warning: Image in text ./Tutorial/chapter_motifs.tex:1: Warning: line too long ./Tutorial/chapter_motifs.tex:530: Warning: line too long ./Tutorial/chapter_motifs.tex:532: Warning: line too long ./Tutorial/chapter_motifs.tex:538: Warning: line too long ./Tutorial/chapter_motifs.tex:540: Warning: line too long ./Tutorial/chapter_motifs.tex:549: Warning: line too long ./Tutorial/chapter_motifs.tex:553: Warning: line too long ./Tutorial/chapter_motifs.tex:555: Warning: line too long 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'y' failed ./Tutorial/chapter_cluster.tex:601: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:605: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:610: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:706: Warning: line too long ./Tutorial/chapter_cluster.tex:714: Warning: line too long ./Tutorial/chapter_cluster.tex:750: Warning: overfull line in array : array too wide ./Tutorial/chapter_cluster.tex:750: Warning: line too long ./Tutorial/chapter_cluster.tex:750: Warning: line too long ./Tutorial/chapter_learning.tex:38: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:38: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:69: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:69: Warning: line too long ./Tutorial/chapter_learning.tex:69: Warning: line too long 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./Tutorial/chapter_graphics.tex:406: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:438: Warning: Image in text ./Tutorial/chapter_graphics.tex:438: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:438: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:438: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:464: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:464: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:530: Warning: Image in text ./Tutorial/chapter_graphics.tex:530: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:530: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:532: Warning: Image in text ./Tutorial/chapter_graphics.tex:532: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:532: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:557: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:557: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:647: Warning: Image in text ./Tutorial/chapter_graphics.tex:647: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:647: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:671: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:671: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:762: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:762: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:762: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:762: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:762: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:801: Warning: Image in text ./Tutorial/chapter_graphics.tex:801: Warning: '_' occurring 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math mode ./Tutorial/chapter_contributing.tex:10: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:37: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:79: Warning: '_' occurring outside math mode ./Tutorial.tex:122: Warning: line too long ./Tutorial.tex:133: Warning: Application of '\'' on 'e' failed ./Tutorial.tex:133: Warning: Application of '\'' on 'o' failed ./Tutorial.tex:137: Warning: Application of '\"' on 'u' failed ./Tutorial.tex:202: Warning: Application of '\"' on 'o' failed ./Tutorial.tex:202: Warning: Application of '\"' on 'u' failed HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial.tex:68: Warning: tt_mode is an empty style ./Tutorial.haux:527: Giving up command: \@hevea@cbrace ./Tutorial.tex:68: Giving up command: \input ./Tutorial.tex:68: Warning: Failure while reading .haux ./Tutorial.tex:95: Warning: Application of '\'' on 'n' failed ./Tutorial/chapter_introduction.tex:110: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:114: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:115: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:116: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_introduction.tex:117: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_introduction.tex:118: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_introduction.tex:119: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_introduction.tex:237: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_introduction.tex:250: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_introduction.tex:292: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_introduction.tex:292: Warning: Undefined label: 'sec:converting-alignments' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:advanced' ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_quick_start.tex:35: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_quick_start.tex:49: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'chapter:swiss_prot' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_quick_start.tex:76: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_quick_start.tex:78: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:78: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:83: Warning: Undefined label: 'sec:connecting-with-biological-databases' ./Tutorial/chapter_quick_start.tex:88: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:123: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:149: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_quick_start.tex:149: Warning: Undefined label: 'chapter:Bio.AlignIO' ./Tutorial/chapter_quick_start.tex:154: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:162: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:163: Warning: Undefined label: 'chapter:swiss_prot' ./Tutorial/chapter_quick_start.tex:173: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:SeqRecord' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_objects.tex:137: Warning: Undefined label: 'sec:mutable-seq' ./Tutorial/chapter_seq_objects.tex:207: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_objects.tex:209: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_objects.tex:376: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_seq_objects.tex:394: Warning: Command not found: \downarrow ./Tutorial/chapter_seq_objects.tex:449: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:564: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seq_objects.tex:570: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:719: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:810: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:871: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:34: Warning: Undefined label: 'sec:FASTQ-filtering-example' ./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined label: 'sec:seq_features' 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Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:296: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:528: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:534: Warning: line too long ./Tutorial/chapter_seq_annot.tex:543: Warning: line too long ./Tutorial/chapter_seq_annot.tex:632: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_seq_annot.tex:640: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:657: Warning: line too long ./Tutorial/chapter_seq_annot.tex:676: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:679: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_seq_annot.tex:699: Warning: line too long ./Tutorial/chapter_seq_annot.tex:758: Warning: line too long ./Tutorial/chapter_seq_annot.tex:833: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:841: Warning: Undefined label: 'sec:FASTQ-slicing-off-primer' ./Tutorial/chapter_seq_annot.tex:842: Warning: Undefined label: 'sec:FASTQ-slicing-off-adaptor' ./Tutorial/chapter_seq_annot.tex:855: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:926: Warning: line too long ./Tutorial/chapter_seq_annot.tex:956: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:quick-start' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:SeqRecord' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:SeqRecord' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_seqio.tex:15: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:SeqIO_Online' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:45: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_seqio.tex:45: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:45: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:69: Warning: Undefined label: 'seq:sequence-parsing-plus-pylab' ./Tutorial/chapter_seqio.tex:148: Warning: Undefined label: 'chapter:SeqRecord' ./Tutorial/chapter_seqio.tex:148: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:195: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:241: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:280: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:283: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:359: Warning: Undefined label: 'sec:SeqIO-index-bgzf' ./Tutorial/chapter_seqio.tex:362: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:374: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:374: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:375: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_seqio.tex:451: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_seqio.tex:451: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:456: Warning: Undefined label: 'chapter:swiss_prot' ./Tutorial/chapter_seqio.tex:491: Warning: Undefined label: 'SeqIO:to_dict' ./Tutorial/chapter_seqio.tex:497: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:501: Warning: Undefined label: 'sec:SeqIO-index-db' ./Tutorial/chapter_seqio.tex:504: Warning: Undefined label: 'sec:SeqIO-indexing-discussion' ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:514: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:588: Warning: Undefined label: 'sec:fasta-parsing' ./Tutorial/chapter_seqio.tex:704: Warning: Undefined label: 'sec:fastq-indexing' ./Tutorial/chapter_seqio.tex:725: Warning: Undefined label: 'seq:seqio-todict-functionkey' ./Tutorial/chapter_seqio.tex:771: Warning: line too long ./Tutorial/chapter_seqio.tex:787: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_seqio.tex:869: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1009: Warning: line too long ./Tutorial/chapter_seqio.tex:1016: Warning: line too long ./Tutorial/chapter_seqio.tex:1021: Warning: line too long ./Tutorial/chapter_seqio.tex:1097: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1106: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:1139: Warning: Undefined label: 'sec:SeqIO-fastq-conversion' ./Tutorial/chapter_seqio.tex:1139: Warning: Undefined label: 'sec:SeqIO-fasta-qual-conversion' ./Tutorial/chapter_seqio.tex:1154: Warning: Undefined label: 'sec:seq-reverse-complement' ./Tutorial/chapter_seqio.tex:1164: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_seqio.tex:1205: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seqio.tex:1224: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seqio.tex:1303: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: 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'sec:appendix-handles' ./Tutorial/chapter_align.tex:1458: Warning: line too long ./Tutorial/chapter_align.tex:1459: Warning: line too long ./Tutorial/chapter_align.tex:1460: Warning: line too long ./Tutorial/chapter_align.tex:1550: Warning: Undefined citation: 'durbin1998' ./Tutorial/chapter_align.tex:1562: Warning: Undefined label: 'sec:pairwise-aligner' ./Tutorial/chapter_align.tex:1644: Warning: Undefined label: 'sec:pairwise-matchscores' ./Tutorial/chapter_align.tex:1644: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1644: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1645: Warning: Undefined label: 'sec:pairwise-basic' ./Tutorial/chapter_align.tex:1648: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1649: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1812: Warning: overfull line in array : array too wide ./Tutorial/chapter_align.tex:1812: Warning: line too long ./Tutorial/chapter_align.tex:1812: Warning: line too long ./Tutorial/chapter_align.tex:1855: Warning: Undefined label: 'sec:pairwise-examples' ./Tutorial/chapter_align.tex:1982: Warning: Undefined citation: 'kent2002' ./Tutorial/chapter_align.tex:1986: Warning: line too long ./Tutorial/chapter_align.tex:2035: Warning: line too long ./Tutorial/chapter_align.tex:2036: Warning: line too long ./Tutorial/chapter_align.tex:2037: Warning: line too long ./Tutorial/chapter_align.tex:2070: Warning: line too long ./Tutorial/chapter_align.tex:2072: Warning: line too long ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:18: Warning: Undefined label: 'chapter:searchio' ./Tutorial/chapter_blast.tex:58: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:119: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_blast.tex:124: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:146: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:155: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:164: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:192: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:236: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:268: Warning: Undefined label: 'sec:parsing-blast-deprecated' ./Tutorial/chapter_blast.tex:282: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:284: Warning: Undefined label: 'sec:running-local-blast' ./Tutorial/chapter_blast.tex:335: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_blast.tex:335: Warning: Undefined label: 'chapter:Bio.AlignIO' ./Tutorial/chapter_blast.tex:433: Warning: line too long ./Tutorial/chapter_blast.tex:435: Warning: line too long ./Tutorial/chapter_blast.tex:445: Warning: Undefined label: 'fig:blastrecord' ./Tutorial/chapter_blast.tex:449: Warning: Image in text ./Tutorial/chapter_blast.tex:461: Warning: Undefined label: 'fig:psiblastrecord' ./Tutorial/chapter_blast.tex:465: Warning: Image in text ./Tutorial/chapter_searchio.tex:1: Warning: line too long ./Tutorial/chapter_searchio.tex:29: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:31: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:696: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:728: Warning: line too long ./Tutorial/chapter_searchio.tex:730: Warning: line too long ./Tutorial/chapter_searchio.tex:734: Warning: Undefined label: 'chapter:SeqRecord' ./Tutorial/chapter_searchio.tex:883: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:961: Warning: line too long ./Tutorial/chapter_searchio.tex:1082: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:22: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:57: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:60: Warning: Undefined label: 'sec:BioSQL' ./Tutorial/chapter_entrez.tex:209: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:213: Warning: Undefined label: 'sec:entrez-einfo' ./Tutorial/chapter_entrez.tex:227: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:289: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:314: 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./Tutorial/chapter_phylo.tex:96: Warning: Undefined label: 'fig:phylo-simple-draw' ./Tutorial/chapter_phylo.tex:104: Warning: Image in text ./Tutorial/chapter_phylo.tex:192: Warning: Undefined label: 'fig:phylo-color-draw' ./Tutorial/chapter_phylo.tex:199: Warning: Image in text ./Tutorial/chapter_phylo.tex:345: Warning: line too long ./Tutorial/chapter_phylo.tex:359: Warning: Image in text ./Tutorial/chapter_phylo.tex:376: Warning: Undefined label: 'fig:phylo-dot' ./Tutorial/chapter_phylo.tex:387: Warning: Image in text ./Tutorial/chapter_phylo.tex:412: Warning: Undefined label: 'fig:phylo-rooted' ./Tutorial/chapter_phylo.tex:421: Warning: Image in text ./Tutorial/chapter_phylo.tex:428: Warning: Undefined label: 'fig:phylo-color' ./Tutorial/chapter_phylo.tex:454: Warning: Image in text ./Tutorial/chapter_phylo.tex:471: Warning: Image in text ./Tutorial/chapter_phylo.tex:473: Warning: Image in text ./Tutorial/chapter_phylo.tex:832: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_phylo.tex:903: Warning: Undefined label: 'sec:PhyloXML' ./Tutorial/chapter_motifs.tex:1: Warning: line too long ./Tutorial/chapter_motifs.tex:7: Warning: Undefined label: 'sec:links' ./Tutorial/chapter_motifs.tex:152: Warning: Undefined citation: 'cornish1985' ./Tutorial/chapter_motifs.tex:153: Warning: Undefined citation: 'cavener1987' ./Tutorial/chapter_motifs.tex:522: Warning: Undefined citation: 'bailey1994' ./Tutorial/chapter_motifs.tex:530: Warning: line too long ./Tutorial/chapter_motifs.tex:532: Warning: line too long ./Tutorial/chapter_motifs.tex:538: Warning: line too long ./Tutorial/chapter_motifs.tex:540: Warning: line too long ./Tutorial/chapter_motifs.tex:549: Warning: line too long ./Tutorial/chapter_motifs.tex:553: Warning: line too long ./Tutorial/chapter_motifs.tex:555: Warning: line too long ./Tutorial/chapter_motifs.tex:564: Warning: line too long ./Tutorial/chapter_motifs.tex:566: Warning: line too long ./Tutorial/chapter_motifs.tex:567: Warning: 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on 'x' failed ./Tutorial/chapter_cluster.tex:85: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:116: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:116: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:153: Warning: Undefined citation: 'snedecor1989' ./Tutorial/chapter_cluster.tex:182: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:263: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:331: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:546: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:594: Warning: Undefined citation: 'kohonen1997' ./Tutorial/chapter_cluster.tex:594: Warning: Undefined citation: 'tamayo1999' ./Tutorial/chapter_cluster.tex:601: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:605: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:610: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:641: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:654: Warning: Undefined citation: 'yeung2001' ./Tutorial/chapter_cluster.tex:662: Warning: Undefined citation: 'golub1971' ./Tutorial/chapter_cluster.tex:706: Warning: line too long ./Tutorial/chapter_cluster.tex:714: Warning: line too long ./Tutorial/chapter_cluster.tex:750: Warning: overfull line in array : array too wide ./Tutorial/chapter_cluster.tex:750: Warning: line too long ./Tutorial/chapter_cluster.tex:750: Warning: line too long ./Tutorial/chapter_cluster.tex:803: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:806: Warning: Undefined label: 'subsec:distancematrix' ./Tutorial/chapter_cluster.tex:824: Warning: Undefined label: 'subsec:clustercentroids' ./Tutorial/chapter_cluster.tex:847: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:872: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:901: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:923: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:955: Warning: Undefined citation: 'hihara2001' ./Tutorial/chapter_learning.tex:38: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:38: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:39: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:39: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:69: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:69: Warning: line too long ./Tutorial/chapter_learning.tex:69: Warning: line too long ./Tutorial/chapter_learning.tex:69: Warning: line too long ./Tutorial/chapter_learning.tex:74: Warning: Undefined label: 'table:training' ./Tutorial/chapter_learning.tex:210: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:210: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:272: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:272: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:274: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:274: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:284: Warning: Undefined label: 'sec:LogisticRegression' ./Tutorial/chapter_learning.tex:288: Warning: Undefined label: 'table:training' ./Tutorial/chapter_learning.tex:296: Warning: Undefined label: 'subsec:LogisticRegressionTraining' ./Tutorial/chapter_learning.tex:406: Warning: Application of '\"' on 'i' failed ./Tutorial/chapter_graphics.tex:18: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_graphics.tex:28: Warning: Undefined citation: 'toth2006' ./Tutorial/chapter_graphics.tex:31: Warning: 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occurring outside math mode ./Tutorial/chapter_graphics.tex:206: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_graphics.tex:254: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:254: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:300: Warning: Image in text ./Tutorial/chapter_graphics.tex:300: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:300: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:301: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:301: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:320: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_graphics.tex:327: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:371: Warning: Image in text ./Tutorial/chapter_graphics.tex:371: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:384: Warning: '_' occurring 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mode ./Tutorial/chapter_graphics.tex:647: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:671: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:671: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:678: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:762: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:762: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:762: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:762: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:762: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:801: Warning: Image in text ./Tutorial/chapter_graphics.tex:801: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:801: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:828: Warning: '_' occurring outside math mode 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Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:103: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:146: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_cookbook.tex:192: Warning: Undefined label: 'sec:translation' ./Tutorial/chapter_cookbook.tex:197: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_cookbook.tex:317: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_cookbook.tex:415: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:424: Warning: line too long ./Tutorial/chapter_cookbook.tex:429: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:449: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_cookbook.tex:519: Warning: line too long ./Tutorial/chapter_cookbook.tex:597: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:600: Warning: 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mode ./Tutorial/chapter_cookbook.tex:1350: Warning: Undefined label: 'chapter:Bio.AlignIO' ./Tutorial/chapter_cookbook.tex:1360: Warning: Undefined label: 'sec:consensus' ./Tutorial/chapter_cookbook.tex:1361: Warning: Undefined label: 'sec:pssm' ./Tutorial/chapter_cookbook.tex:1362: Warning: Undefined label: 'sec:getting_info_content' ./Tutorial/chapter_cookbook.tex:1363: Warning: Undefined label: 'sec:sub_matrix' ./Tutorial/chapter_cookbook.tex:1369: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1470: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1470: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1497: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1516: Warning: Undefined label: 'sec:freq_table' ./Tutorial/chapter_cookbook.tex:1570: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1579: Warning: '_' occurring outside math mode 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./Tutorial/chapter_contributing.tex:79: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:84: Warning: Undefined label: 'sec:regr_test' ./Tutorial/chapter_contributing.tex:100: Warning: Undefined label: 'sec:regr_test' ./Tutorial/chapter_appendix.tex:88: Warning: Undefined label: 'sec:SeqIO_compressed' ./Tutorial.tex:122: Warning: line too long ./Tutorial.tex:133: Warning: Application of '\'' on 'e' failed ./Tutorial.tex:133: Warning: Application of '\'' on 'o' failed ./Tutorial.tex:137: Warning: Application of '\"' on 'u' failed ./Tutorial.tex:202: Warning: Application of '\"' on 'o' failed ./Tutorial.tex:202: Warning: Application of '\"' on 'u' failed HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial.tex:68: Warning: tt_mode is an empty style ./Tutorial.haux:527: Giving up command: \@hevea@cbrace ./Tutorial.tex:68: Giving up command: \input ./Tutorial.tex:68: Warning: Failure while reading .haux ./Tutorial.tex:95: Warning: Application of '\'' on 'n' failed ./Tutorial/chapter_introduction.tex:110: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:114: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:115: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:116: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_introduction.tex:117: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_introduction.tex:118: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_introduction.tex:119: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_introduction.tex:237: Warning: Undefined label: 'sec:seq-comparison' 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'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:564: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seq_objects.tex:570: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:719: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:810: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:871: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:34: Warning: Undefined label: 'sec:FASTQ-filtering-example' ./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined label: 'sec:seq_features' 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Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:296: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:528: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:534: Warning: line too long ./Tutorial/chapter_seq_annot.tex:543: Warning: line too long ./Tutorial/chapter_seq_annot.tex:632: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_seq_annot.tex:640: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:657: Warning: line too long ./Tutorial/chapter_seq_annot.tex:676: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:679: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_seq_annot.tex:699: Warning: line too long ./Tutorial/chapter_seq_annot.tex:758: Warning: line too long ./Tutorial/chapter_seq_annot.tex:833: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:841: Warning: Undefined label: 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./Tutorial/chapter_seqio.tex:362: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:374: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:374: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:375: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_seqio.tex:451: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_seqio.tex:451: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:456: Warning: Undefined label: 'chapter:swiss_prot' ./Tutorial/chapter_seqio.tex:491: Warning: Undefined label: 'SeqIO:to_dict' ./Tutorial/chapter_seqio.tex:497: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:501: Warning: Undefined label: 'sec:SeqIO-index-db' 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./Tutorial/chapter_seqio.tex:1106: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:1139: Warning: Undefined label: 'sec:SeqIO-fastq-conversion' ./Tutorial/chapter_seqio.tex:1139: Warning: Undefined label: 'sec:SeqIO-fasta-qual-conversion' ./Tutorial/chapter_seqio.tex:1154: Warning: Undefined label: 'sec:seq-reverse-complement' ./Tutorial/chapter_seqio.tex:1164: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_seqio.tex:1205: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seqio.tex:1224: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seqio.tex:1303: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: 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'sec:appendix-handles' ./Tutorial/chapter_align.tex:1458: Warning: line too long ./Tutorial/chapter_align.tex:1459: Warning: line too long ./Tutorial/chapter_align.tex:1460: Warning: line too long ./Tutorial/chapter_align.tex:1550: Warning: Undefined citation: 'durbin1998' ./Tutorial/chapter_align.tex:1562: Warning: Undefined label: 'sec:pairwise-aligner' ./Tutorial/chapter_align.tex:1644: Warning: Undefined label: 'sec:pairwise-matchscores' ./Tutorial/chapter_align.tex:1644: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1644: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1645: Warning: Undefined label: 'sec:pairwise-basic' ./Tutorial/chapter_align.tex:1648: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1649: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1812: Warning: overfull line in array : array too wide 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./Tutorial/chapter_blast.tex:124: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:146: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:155: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:164: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:192: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:236: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:268: Warning: Undefined label: 'sec:parsing-blast-deprecated' ./Tutorial/chapter_blast.tex:282: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:284: Warning: Undefined label: 'sec:running-local-blast' ./Tutorial/chapter_blast.tex:335: Warning: Undefined label: 'chapter:Bio.SeqIO' 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Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:961: Warning: line too long ./Tutorial/chapter_searchio.tex:1082: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:22: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:57: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:60: Warning: Undefined label: 'sec:BioSQL' ./Tutorial/chapter_entrez.tex:209: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:213: Warning: Undefined label: 'sec:entrez-einfo' ./Tutorial/chapter_entrez.tex:227: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:289: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:314: 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outside math mode ./Tutorial/chapter_entrez.tex:1042: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1083: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1126: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1126: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1128: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1180: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1215: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1222: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:1223: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1275: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_entrez.tex:1299: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_entrez.tex:1300: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1358: Warning: Undefined label: 'sec:entrez-search-fetch-genbank' ./Tutorial/chapter_entrez.tex:1389: Warning: Undefined label: 'subsec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:1487: Warning: Undefined label: 'subsec:entrez-and-medline' ./Tutorial/chapter_entrez.tex:1492: Warning: Undefined label: 'sec:elink' ./Tutorial/chapter_entrez.tex:1516: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_uniprot.tex:1: Warning: line too long ./Tutorial/chapter_uniprot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:10: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:29: Warning: line too long ./Tutorial/chapter_uniprot.tex:38: Warning: line too long ./Tutorial/chapter_uniprot.tex:41: Warning: Undefined label: 'subsec:expasy_swissprot' ./Tutorial/chapter_uniprot.tex:49: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:84: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:84: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:345: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_uniprot.tex:446: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:446: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:495: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1: Warning: line too long ./Tutorial/chapter_pdb.tex:18: Warning: Undefined label: 'problem structures' ./Tutorial/chapter_pdb.tex:207: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:216: Warning: Undefined label: 'problem structures' ./Tutorial/chapter_pdb.tex:220: Warning: Image in text ./Tutorial/chapter_pdb.tex:353: Warning: Undefined label: 'hetero problems' ./Tutorial/chapter_pdb.tex:398: Warning: Undefined label: 'point mutations' 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[5] Overfull \hbox (2.99303pt too wide) in paragraph at lines 246--248 \OT1/cmr/m/n/10 Check the built in doc-strings (\OT1/cmtt/m/n/10 from Bio impor t SeqIO\OT1/cmr/m/n/10 , then \OT1/cmtt/m/n/10 help(SeqIO)\OT1/cmr/m/n/10 ), or see [][]$\OT1/cmtt/m/n/10 http : / / biopython . LaTeX Warning: Reference `sec:appendix-handles' on page 6 undefined on input li ne 250. [6] LaTeX Warning: Reference `sec:SeqIO-conversion' on page 7 undefined on input li ne 292. LaTeX Warning: Reference `sec:converting-alignments' on page 7 undefined on inp ut line 292. ) [7] (./Tutorial/chapter_quick_start.tex Chapter 2. LaTeX Warning: Reference `chapter:cookbook' on page 8 undefined on input line 1 4. LaTeX Warning: Reference `chapter:advanced' on page 8 undefined on input line 1 4. LaTeX Warning: Reference `chapter:Bio.Seq' on page 8 undefined on input line 19 . [8] LaTeX Warning: Reference `chapter:Bio.Seq' on page 9 undefined on input line 35 . LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 9 undefined on input line 49. LaTeX Warning: Reference `sec:sequence-parsing' on page 9 undefined on input li ne 69. LaTeX Warning: Reference `chapter:entrez' on page 9 undefined on input line 69. LaTeX Warning: Reference `chapter:swiss_prot' on page 9 undefined on input line 69. LaTeX Warning: Reference `sec:align_clustal' on page 9 undefined on input line 69. [9] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 10 undefined on input line 76. LaTeX Warning: Reference `sec:connecting-with-biological-databases' on page 10 undefined on input line 83. Overfull \hbox (7.99081pt too wide) in paragraph at lines 117--117 []\OT1/cmtt/m/n/10 Seq('CGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGATGAGACCGTGG. ..CGC', SingleLetterAlphabet())[] Overfull \hbox (7.99081pt too wide) in paragraph at lines 117--117 []\OT1/cmtt/m/n/10 Seq('CATTGTTGAGATCACATAATAATTGATCGAGTTAATCTGGAGGATCTGTTTACT. ..GCC', SingleLetterAlphabet())[] [10] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 11 undefined on input line 149. LaTeX Warning: Reference `chapter:Bio.AlignIO' on page 11 undefined on input li ne 149. LaTeX Warning: Reference `chapter:cookbook' on page 11 undefined on input line 154. LaTeX Warning: Reference `chapter:entrez' on page 11 undefined on input line 16 2. LaTeX Warning: Reference `chapter:swiss_prot' on page 11 undefined on input lin e 163. [11] LaTeX Warning: Reference `chapter:cookbook' on page 12 undefined on input line 173. ) [12] (./Tutorial/chapter_seq_objects.tex Chapter 3. LaTeX Warning: Reference `chapter:SeqRecord' on page 13 undefined on input line 5. LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 13 undefined on input line 5. [13] [14] LaTeX Warning: Reference `sec:mutable-seq' on page 15 undefined on input line 1 37. [15] LaTeX Warning: Reference `sec:SeqRecord-format' on page 16 undefined on input l ine 207. LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 16 undefined on input line 209. [16] Overfull \hbox (39.49054pt too wide) in paragraph at lines 274--274 []\OT1/cmtt/m/n/10 >>> list_of_seqs = [Seq("ACGT", generic_dna), Seq("AACC", ge neric_dna), Seq("GGTT", generic_dna)][] Overfull \hbox (39.49054pt too wide) in paragraph at lines 285--285 []\OT1/cmtt/m/n/10 >>> list_of_seqs = [Seq("ACGT", generic_dna), Seq("AACC", ge neric_dna), Seq("GGTT", generic_dna)][] [17] [18] LaTeX Warning: Reference `sec:SeqIO-reverse-complement' on page 19 undefined on input line 376. [19] LaTeX Warning: Reference `sec:seq-module-functions' on page 20 undefined on inp ut line 449. [20] [21] LaTeX Warning: Reference `sec:SeqIO-translate' on page 22 undefined on input li ne 564. LaTeX Warning: Reference `sec:seq-module-functions' on page 22 undefined on inp ut line 570. [22] [23] LaTeX Warning: Reference `sec:seq-to-string' on page 24 undefined on input line 719. [24] LaTeX Warning: Reference `sec:seq-to-string' on page 25 undefined on input line 810. [25] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 26 undefined on input line 871. [26]) [27] (./Tutorial/chapter_seq_annot.tex Chapter 4. LaTeX Warning: Reference `chapter:Bio.Seq' on page 28 undefined on input line 4 . LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 28 undefined on input line 4. LaTeX Warning: Reference `chapter:Bio.Seq' on page 28 undefined on input line 2 1. LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 28 undefined on input line 21. LaTeX Warning: Reference `sec:FASTQ-filtering-example' on page 28 undefined on input line 34. [28] LaTeX Warning: Reference `sec:seq_features' on page 29 undefined on input line 38. LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 29 undefined on input line 48. [29] Overfull \hbox (2.74086pt too wide) in paragraph at lines 129--129 []\OT1/cmtt/m/n/10 >gi|45478711|ref|NC_005816.1| Yersinia pestis biovar Microtu s ... pPCP1, complete sequence[] LaTeX Warning: Reference `chapter:quick-start' on page 30 undefined on input li ne 131. LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 30 undefined on input line 133. Overfull \hbox (34.24059pt too wide) in paragraph at lines 144--144 []\OT1/cmtt/m/n/10 SingleLetterAlphabet()), id='gi|45478711|ref|NC_005816.1|', name='gi|45478711|ref|NC_005816.1|',[] Overfull \hbox (7.99081pt too wide) in paragraph at lines 153--153 []\OT1/cmtt/m/n/10 Seq('TGTAACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGG. ..CTG', SingleLetterAlphabet())[] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 30 undefined on input line 158. Overfull \hbox (7.99081pt too wide) in paragraph at lines 169--169 []\OT1/cmtt/m/n/10 'gi|45478711|ref|NC_005816.1| Yersinia pestis biovar Microtu s ... pPCP1, complete sequence'[] [30] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 31 undefined on input line 216. Overfull \hbox (7.99081pt too wide) in paragraph at lines 226--226 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 31 undefined on input line 229. [31] LaTeX Warning: Reference `sec:seq_features' on page 32 undefined on input line 279. LaTeX Warning: Reference `sec:locations' on page 32 undefined on input line 288 . LaTeX Warning: Reference `sec:locations' on page 32 undefined on input line 296 . [32] [33] [34] [35] LaTeX Warning: Reference `sec:locations' on page 36 undefined on input line 528 . Overfull \hbox (44.7405pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 >>> example_parent = Seq("ACCGAGACGGCAAAGGCTAGCATAGGTATGAGAC TTCCTTCCTGCCAGTGCTGAGGAACTGGGAGCCTAC")[] Overfull \hbox (128.73976pt too wide) in paragraph at lines 546--546 []\OT1/cmtt/m/n/10 >>> feature_seq = example_parent[example_feature.location.st art:example_feature.location.end].reverse_complement()[] [36] Overfull \hbox (165.48944pt too wide) in paragraph at lines 618--618 []\OT1/cmtt/m/n/10 NotImplementedError: SeqRecord comparison is deliberately no t implemented. Explicitly compare the attributes of interest.[] LaTeX Warning: Reference `sec:seq-comparison' on page 37 undefined on input lin e 632. LaTeX Warning: Reference `sec:locations' on page 37 undefined on input line 640 . [37] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 38 undefined on input line 676. LaTeX Warning: Reference `sec:Bio.SeqIO-and-StringIO' on page 38 undefined on i nput line 679. Overfull \hbox (2.74086pt too wide) in paragraph at lines 703--703 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence',[] [38] Overfull \hbox (7.99081pt too wide) in paragraph at lines 762--762 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [39] LaTeX Warning: Reference `sec:SeqRecord-format' on page 40 undefined on input l ine 833. Overfull \hbox (39.49054pt too wide) in paragraph at lines 839--839 []\OT1/cmtt/m/n/10 >>> sub_record.description = "Yersinia pestis biovar Microtu s str. 91001 plasmid pPCP1, partial."[] LaTeX Warning: Reference `sec:FASTQ-slicing-off-primer' on page 40 undefined on input line 841. LaTeX Warning: Reference `sec:FASTQ-slicing-off-adaptor' on page 40 undefined o n input line 842. LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 40 undefined on input line 855. [40] Overfull \hbox (7.99081pt too wide) in paragraph at lines 930--930 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [41] Overfull \hbox (7.99081pt too wide) in paragraph at lines 960--960 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [42] Overfull \hbox (170.7394pt too wide) in paragraph at lines 1032--1032 []\OT1/cmtt/m/n/10 >>> print("%s %i %i %i %i" % (record.id, len(record), len(re cord.features), len(record.dbxrefs), len(record.annotations)))[] Overfull \hbox (65.74031pt too wide) in paragraph at lines 1042--1042 []\OT1/cmtt/m/n/10 >>> print("%s %i %i %i %i" % (rc.id, len(rc), len(rc.feature s), len(rc.dbxrefs), len(rc.annotations)))[] ) [43] (./Tutorial/chapter_seqio.tex Chapter 5. LaTeX Warning: Reference `chapter:quick-start' on page 44 undefined on input li ne 4. LaTeX Warning: Reference `chapter:SeqRecord' on page 44 undefined on input line 4. LaTeX Warning: Reference `chapter:SeqRecord' on page 44 undefined on input line 13. LaTeX Warning: Reference `chapter:Bio.Seq' on page 44 undefined on input line 1 3. LaTeX Warning: Reference `sec:low-level-fasta-fastq' on page 44 undefined on in put line 15. LaTeX Warning: Reference `sec:SeqIO_Online' on page 44 undefined on input line 23. LaTeX Warning: Reference `sec:appendix-handles' on page 44 undefined on input l ine 23. [44] LaTeX Warning: Reference `sec:sequence-parsing' on page 45 undefined on input l ine 45. Overfull \hbox (7.99081pt too wide) in paragraph at lines 66--66 []\OT1/cmtt/m/n/10 >>> identifiers = [seq_record.id for seq_record in SeqIO.par se("ls_orchid.gbk", "genbank")][] LaTeX Warning: Reference `seq:sequence-parsing-plus-pylab' on page 45 undefined on input line 69. [45] [46] LaTeX Warning: Reference `chapter:SeqRecord' on page 47 undefined on input line 148. [47] [48] LaTeX Warning: Reference `sec:appendix-handles' on page 49 undefined on input l ine 283. [49] LaTeX Warning: Reference `sec:SeqIO-index-bgzf' on page 50 undefined on input l ine 359. LaTeX Warning: Reference `sec:efetch' on page 50 undefined on input line 375. Overfull \hbox (18.49072pt too wide) in paragraph at lines 391--391 []\OT1/cmtt/m/n/10 with Entrez.efetch(db="nucleotide", rettype="fasta", retmode ="text", id="6273291") as handle:[] [50] Overfull \hbox (23.74068pt too wide) in paragraph at lines 438--438 [] \OT1/cmtt/m/n/10 % (len(seq_record), len(seq_record.features), seq_record.annotations["source"]))[] LaTeX Warning: Reference `chapter:entrez' on page 51 undefined on input line 45 1. LaTeX Warning: Reference `sec:entrez-guidelines' on page 51 undefined on input line 451. LaTeX Warning: Reference `chapter:swiss_prot' on page 51 undefined on input lin e 456. Overfull \hbox (18.49072pt too wide) in paragraph at lines 482--482 []\OT1/cmtt/m/n/10 RecName: Full=Chalcone synthase 3; EC=2.3.1.74; AltName: Ful l=Naringenin-chalcone synthase 3;[] [51] LaTeX Warning: Reference `SeqIO:to_dict' on page 52 undefined on input line 491 . LaTeX Warning: Reference `sec:SeqIO-index' on page 52 undefined on input line 4 97. LaTeX Warning: Reference `sec:SeqIO-index-db' on page 52 undefined on input lin e 501. LaTeX Warning: Reference `sec:SeqIO-indexing-discussion' on page 52 undefined o n input line 504. LaTeX Warning: Reference `sec:SeqIO-index' on page 52 undefined on input line 5 14. [52] LaTeX Warning: Reference `sec:fasta-parsing' on page 53 undefined on input line 588. Overfull \hbox (34.24059pt too wide) in paragraph at lines 609--609 []\OT1/cmtt/m/n/10 orchid_dict = SeqIO.to_dict(SeqIO.parse("ls_orchid.fasta", " fasta"), key_function=get_accession)[] [53] [54] LaTeX Warning: Reference `sec:fastq-indexing' on page 55 undefined on input lin e 704. LaTeX Warning: Reference `seq:seqio-todict-functionkey' on page 55 undefined on input line 725. Overfull \hbox (9.93459pt too wide) in paragraph at lines 769--774 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / [55] LaTeX Warning: Reference `sec:SeqIO-sort' on page 56 undefined on input line 78 7. Overfull \hbox (4.48064pt too wide) in paragraph at lines 812--815 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , [56] LaTeX Warning: Reference `sec:seqio-index-getraw' on page 57 undefined on input line 869. [57] [58] [59] LaTeX Warning: Reference `sec:seqio-index-getraw' on page 60 undefined on input line 1097. [60] LaTeX Warning: Reference `sec:SeqIO-fastq-conversion' on page 61 undefined on i nput line 1139. LaTeX Warning: Reference `sec:SeqIO-fasta-qual-conversion' on page 61 undefined on input line 1139. LaTeX Warning: Reference `sec:seq-reverse-complement' on page 61 undefined on i nput line 1154. LaTeX Warning: Reference `sec:SeqRecord-reverse-complement' on page 61 undefine d on input line 1164. Overfull \hbox (13.24077pt too wide) in paragraph at lines 1174--1174 []\OT1/cmtt/m/n/10 >>> records = [rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1184--1184 []\OT1/cmtt/m/n/10 >>> records = [rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1192--1192 []\OT1/cmtt/m/n/10 >>> records = (rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] [61] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1203--1203 []\OT1/cmtt/m/n/10 >>> records = (rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] LaTeX Warning: Reference `sec:SeqIO-translate' on page 62 undefined on input li ne 1205. LaTeX Warning: Reference `sec:SeqRecord-format' on page 62 undefined on input l ine 1224. Overfull \hbox (19.46596pt too wide) in paragraph at lines 1240--1242 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) [62] Overfull \hbox (21.32593pt too wide) in paragraph at lines 1284--1288 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator LaTeX Warning: Reference `chapter:cookbook' on page 63 undefined on input line 1303. ) [63] (./Tutorial/chapter_align.tex Chapter 6. LaTeX Warning: Reference `sec:appendix-handles' on page 64 undefined on input l ine 31. LaTeX Warning: Reference `sec:AlignIO-count-argument' on page 64 undefined on i nput line 35. [64] [65] LaTeX Warning: Reference `sec:alignment-format-method' on page 66 undefined on input line 115. [66] [67] [68] [69] [70] [71] Overfull \hbox (5.54102pt too wide) in paragraph at lines 435--436 \OT1/cmr/m/n/10 ever you can't do that when your records come from a gen-er-a-t or/it-er-a-tor. There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() LaTeX Warning: Reference `sec:SeqIO-conversion' on page 72 undefined on input l ine 445. Overfull \hbox (39.68698pt too wide) in paragraph at lines 443--448 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() [72] [73] [74] LaTeX Warning: Reference `sec:SeqRecord-format' on page 75 undefined on input l ine 617. Overfull \hbox (16.49278pt too wide) in paragraph at lines 619--622 []\OT1/cmr/m/n/10 Internally the [][]\OT1/cmtt/m/n/10 format() []\OT1/cmr/m/n/1 0 method is us-ing the [][]\OT1/cmtt/m/n/10 StringIO []\OT1/cmr/m/n/10 string b ased han-dle and call-ing [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write()[]\OT1/cmr/m/ n/10 . [75] [76] LaTeX Warning: Reference `sec:SeqRecord-addition' on page 77 undefined on input line 792. [77] LaTeX Warning: Reference `sec:pairwise2' on page 78 undefined on input line 844 . LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 78 undefined on input line 849. LaTeX Warning: Reference `seq:emboss-needle-water' on page 78 undefined on inpu t line 876. [78] [79] LaTeX Warning: Reference `sec:Phylo' on page 80 undefined on input line 1023. [80] Overfull \hbox (8.40039pt too wide) in paragraph at lines 1057--1061 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO [81] [82] LaTeX Warning: Reference `sec:appendix-handles' on page 83 undefined on input l ine 1245. [83] Overfull \hbox (23.74068pt too wide) in paragraph at lines 1316--1316 []\OT1/cmtt/m/n/10 needle -outfile=needle.txt -asequence=alpha.faa -bsequence=b eta.faa -gapopen=10 -gapextend=0.5[] [84] Overfull \hbox (23.74068pt too wide) in paragraph at lines 1364--1364 []\OT1/cmtt/m/n/10 needle -outfile=needle.txt -asequence=alpha.faa -bsequence=b eta.faa -gapopen=10 -gapextend=0.5[] [85] [86] LaTeX Warning: Citation `durbin1998' on page 87 undefined on input line 1550. [87] LaTeX Warning: Reference `sec:pairwise-aligner' on page 88 undefined on input l ine 1562. [88] LaTeX Warning: Reference `sec:pairwise-matchscores' on page 89 undefined on inp ut line 1644. LaTeX Warning: Reference `sec:pairwise-affine-gapscores' on page 89 undefined o n input line 1644. LaTeX Warning: Reference `sec:pairwise-general-gapscores' on page 89 undefined on input line 1644. LaTeX Warning: Reference `sec:pairwise-basic' on page 89 undefined on input lin e 1645. LaTeX Warning: Reference `sec:pairwise-affine-gapscores' on page 89 undefined o n input line 1648. LaTeX Warning: Reference `sec:pairwise-general-gapscores' on page 89 undefined on input line 1649. [89] Overfull \hbox (175.46193pt too wide) in paragraph at lines 1776--1813 [][] [90] [91] [92] LaTeX Warning: Reference `sec:pairwise-examples' on page 93 undefined on input line 1855. [93] [94] LaTeX Warning: Citation `kent2002' on page 95 undefined on input line 1982. Overfull \hbox (19.80069pt too wide) in paragraph at lines 2013--2014 \OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing [][]\OT1/cmtt/m/n/10 len(alignments) [95] [96]) [97] (./Tutorial/chapter_blast.tex Chapter 7. LaTeX Warning: Reference `chapter:searchio' on page 98 undefined on input line 18. [98] LaTeX Warning: Reference `sec:parsing-blast' on page 99 undefined on input line 58. LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 99 undefined on input line 119. LaTeX Warning: Reference `sec:parsing-blast' on page 99 undefined on input line 124. [99] LaTeX Warning: Reference `sec:parsing-blast' on page 100 undefined on input lin e 146. LaTeX Warning: Reference `sec:parsing-blast' on page 100 undefined on input lin e 155. LaTeX Warning: Reference `sec:running-www-blast' on page 100 undefined on input line 164. LaTeX Warning: Reference `sec:alignment-tools' on page 100 undefined on input l ine 192. [100] LaTeX Warning: Reference `sec:parsing-blast' on page 101 undefined on input lin e 236. LaTeX Warning: Reference `sec:parsing-blast-deprecated' on page 101 undefined o n input line 268. LaTeX Warning: Reference `sec:running-www-blast' on page 101 undefined on input line 282. LaTeX Warning: Reference `sec:running-local-blast' on page 101 undefined on inp ut line 284. [101] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 102 undefined on input lin e 335. LaTeX Warning: Reference `chapter:Bio.AlignIO' on page 102 undefined on input l ine 335. [102] Overfull \hbox (55.2404pt too wide) in paragraph at lines 436--436 []\OT1/cmtt/m/n/10 sequence: >gb|AF283004.1|AF283004 Arabidopsis thaliana cold acclimation protein WCOR413-like protein[] [103] LaTeX Warning: Reference `fig:blastrecord' on page 104 undefined on input line 445. Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:psiblastrecord' on page 104 undefined on input li ne 461. Excluding 'htmlonly' comment.) [104] [105 <./images/BlastRecord.png>] [106 <./i mages/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. [107] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult [108] [109] [110] [111] [112] Overfull \hbox (44.7405pt too wide) in paragraph at lines 462--462 []\OT1/cmtt/m/n/10 ... hit.id = hit.id.split("|")[3] # renames "gi|301171 322|ref|NR_035857.1|" to "NR_035857.1"[] [113] [114] [115] [116] Overfull \hbox (469.98679pt too wide) in paragraph at lines 731--731 []\OT1/cmtt/m/n/10 SeqRecord(seq=Seq('CCCTCTACAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGA AAGTGCTTCCTTT...GGG', DNAAlphabet()), id='42291', name='aligned query sequence' , description='mystery_seq', dbxrefs=[])[] Overfull \hbox (769.23418pt too wide) in paragraph at lines 731--731 []\OT1/cmtt/m/n/10 SeqRecord(seq=Seq('CCCTCTACAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGA AAGTGCTTCCTTT...GGG', DNAAlphabet()), id='gi|262205317|ref|NR_030195.1|', name= 'aligned hit sequence', description='Homo sapiens microRNA 520b (MIR520B), micr oRNA', dbxrefs=[])[] LaTeX Warning: Reference `chapter:SeqRecord' on page 117 undefined on input lin e 734. Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment [117] [118] Overfull \hbox (65.74031pt too wide) in paragraph at lines 870--870 []\OT1/cmtt/m/n/10 >>> blat_hsp2.hit_inter_ranges # start and end coordinates of intervening regions in the hit sequence[] [119] Overfull \hbox (769.23418pt too wide) in paragraph at lines 962--962 []\OT1/cmtt/m/n/10 SeqRecord(seq=Seq('CCCTCTACAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGA AAGTGCTTCCTTT...GGG', DNAAlphabet()), id='gi|262205317|ref|NR_030195.1|', name= 'aligned hit sequence', description='Homo sapiens microRNA 520b (MIR520B), micr oRNA', dbxrefs=[])[] [120] Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , LaTeX Warning: Reference `sec:SeqIO-index' on page 121 undefined on input line 1082. Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . [121] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 >>> idx = SearchIO.index("tab_2226_tblastn_001.txt", "blast- tab", key_function=key_function)[] Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse [122]) [123] (./Tutorial/chapter_entrez.tex Chapter 9. LaTeX Warning: Reference `sec:entrez-specialized-parsers' on page 124 undefined on input line 22. [124] LaTeX Warning: Reference `sec:entrez-webenv' on page 125 undefined on input lin e 57. LaTeX Warning: Reference `sec:BioSQL' on page 125 undefined on input line 60. [125] [126] [127] LaTeX Warning: Reference `sec:efetch' on page 128 undefined on input line 209. LaTeX Warning: Reference `sec:entrez-einfo' on page 128 undefined on input line 213. Overfull \hbox (70.99026pt too wide) in paragraph at lines 224--224 []\OT1/cmtt/m/n/10 >>> handle = Entrez.esearch(db="nucleotide", term="Cypripedi oideae[Orgn] AND matK[Gene]", idtype="acc")[] LaTeX Warning: Reference `sec:efetch' on page 128 undefined on input line 227. [128] LaTeX Warning: Reference `sec:entrez-webenv' on page 129 undefined on input lin e 289. [129] LaTeX Warning: Reference `sec:SeqIO_GenBank_Online' on page 130 undefined on in put line 314. LaTeX Warning: Reference `sec:efetch' on page 130 undefined on input line 314. [130] [131] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 132 undefined on input lin e 408. Overfull \hbox (13.24077pt too wide) in paragraph at lines 450--450 [] \OT1/cmtt/m/n/10 net_handle = Entrez.efetch(db="nucleotide", id="EU490707 ", rettype="gb", retmode="text")[] [132] LaTeX Warning: Reference `sec:entrez-specialized-parsers' on page 133 undefined on input line 467. LaTeX Warning: Reference `sec:entrez-webenv' on page 133 undefined on input lin e 469. [133] LaTeX Warning: Reference `sec:elink-citations' on page 134 undefined on input l ine 550. LaTeX Warning: Reference `subsec:entrez_example_genbank' on page 134 undefined on input line 556. [134] [135] Overfull \hbox (312.48816pt too wide) in paragraph at lines 677--677 []\OT1/cmtt/m/n/10 Bio.Entrez.Parser.NotXMLError: Failed to parse the XML data (syntax error: line 1, column 0). Please make sure that the input data are in X ML format.[] [136] Overfull \hbox (249.48871pt too wide) in paragraph at lines 698--698 []\OT1/cmtt/m/n/10 [] Overfull \hbox (370.23766pt too wide) in paragraph at lines 705--705 []\OT1/cmtt/m/n/10 Bio.Entrez.Parser.CorruptedXMLError: Failed to parse the XML data (no element found: line 16, column 0). Please make sure that the input da ta are not corrupted.[] Overfull \hbox (249.48871pt too wide) in paragraph at lines 736--736 []\OT1/cmtt/m/n/10 [] [137] Overfull \hbox (585.48578pt too wide) in paragraph at lines 748--748 []\OT1/cmtt/m/n/10 Bio.Entrez.Parser.ValidationError: Failed to find tag 'Docsu mList' in the DTD. To skip all tags that are not represented in the DTD, please call Bio.Entrez.read or Bio.Entrez.parse with validate=False.[] LaTeX Warning: Reference `sec:SeqIO_GenBank_Online' on page 138 undefined on in put line 767. LaTeX Warning: Reference `sec:efetch' on page 138 undefined on input line 767. [138] [139] LaTeX Warning: Reference `sec:entrez-webenv' on page 140 undefined on input lin e 884. [140] Overfull \hbox (133.98972pt too wide) in paragraph at lines 970--970 []\OT1/cmtt/m/n/10 EXPRESS bone| connective tissue| intestine| liver| live r tumor| normal| soft tissue/muscle tissue tumor| adult[] Overfull \hbox (102.48999pt too wide) in paragraph at lines 970--970 []\OT1/cmtt/m/n/10 SEQUENCE ACC=BG569293.1; NID=g13576946; CLONE=IMAGE:47225 96; END=5'; LID=6989; SEQTYPE=EST; TRACE=44157214[] [141] Overfull \hbox (160.23949pt too wide) in paragraph at lines 992--992 []\OT1/cmtt/m/n/10 ['bone', 'connective tissue', 'intestine', 'liver', 'liver t umor', 'normal', 'soft tissue/muscle tissue tumor', 'adult'][] [142] LaTeX Warning: Reference `sec:orchids' on page 143 undefined on input line 1042 . LaTeX Warning: Reference `sec:entrez-webenv' on page 143 undefined on input lin e 1083. [143] LaTeX Warning: Reference `sec:orchids' on page 144 undefined on input line 1128 . Overfull \hbox (23.74068pt too wide) in paragraph at lines 1152--1152 []\OT1/cmtt/m/n/10 >>> handle = Entrez.esearch(db="nucleotide", term="Cypripedi oideae", retmax=814, idtype="acc")[] [144] LaTeX Warning: Reference `sec:entrez-webenv' on page 145 undefined on input lin e 1180. [145] LaTeX Warning: Reference `sec:entrez-webenv' on page 146 undefined on input lin e 1215. LaTeX Warning: Reference `sec:SeqIO_GenBank_Online' on page 146 undefined on in put line 1222. LaTeX Warning: Reference `sec:entrez-webenv' on page 146 undefined on input lin e 1223. [146] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 147 undefined on input lin e 1275. LaTeX Warning: Reference `sec:entrez-guidelines' on page 147 undefined on input line 1299. LaTeX Warning: Reference `sec:entrez-webenv' on page 147 undefined on input lin e 1300. [147] LaTeX Warning: Reference `sec:entrez-search-fetch-genbank' on page 148 undefine d on input line 1358. [148] LaTeX Warning: Reference `subsec:entrez_example_genbank' on page 149 undefined on input line 1389. [149] LaTeX Warning: Reference `subsec:entrez-and-medline' on page 150 undefined on i nput line 1487. LaTeX Warning: Reference `sec:elink' on page 150 undefined on input line 1492. [150] LaTeX Warning: Reference `sec:entrez-webenv' on page 151 undefined on input lin e 1516. ) [151] (./Tutorial/chapter_uniprot.tex Chapter 10. LaTeX Warning: Reference `sec:SeqIO_ExPASy_and_SwissProt' on page 152 undefined on input line 10. Overfull \hbox (216.73924pt too wide) in paragraph at lines 30--30 []\OT1/cmtt/m/n/10 >>> handle = TextIOWrapper(urlopen("https://raw.githubuserc ontent.com/biopython/biopython/master/Tests/SwissProt/F2CXE6.txt"))[] Overfull \hbox (137.98993pt too wide) in paragraph at lines 39--39 []\OT1/cmtt/m/n/10 >>> handle = urlopen("https://raw.githubusercontent.com/bio python/biopython/master/Tests/SwissProt/F2CXE6.txt")[] LaTeX Warning: Reference `subsec:expasy_swissprot' on page 152 undefined on inp ut line 41. [152] LaTeX Warning: Reference `sec:SeqIO_ExPASy_and_SwissProt' on page 153 undefined on input line 49. Overfull \hbox (270.48853pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 SubName: Full=Plasma membrane intrinsic protein {ECO:0000313 |EMBL:BAN04711.1}; SubName: Full=Predicted protein {ECO:0000313|EMBL:BAJ87517.1 };[] Overfull \hbox (359.73775pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 authors: Matsumoto T., Tanaka T., Sakai H., Amano N., Kanamo ri H., Kurita K., Kikuta A., Kamiya K., Yamamoto M., Ikawa H., Fujii N., Hori K ., Itoh T., Sato K.[] Overfull \hbox (86.74013pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 title: Comprehensive sequence analysis of 24,783 barley full -length cDNAs derived from 12 clone libraries.[] Overfull \hbox (553.98605pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta' , 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'Liliopsida', 'Poales', 'Po aceae', 'BEP clade', 'Pooideae', 'Triticeae', 'Hordeum'][] Overfull \hbox (7.99081pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 title: Functional characterization of a novel plasma membran e intrinsic protein2 in barley.[] Overfull \hbox (553.98605pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta' , 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'Liliopsida', 'Poales', 'Po aceae', 'BEP clade', 'Pooideae', 'Triticeae', 'Hordeum'][] Overfull \hbox (553.98605pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta' , 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'Liliopsida', 'Poales', 'Po aceae', 'BEP clade', 'Pooideae', 'Triticeae', 'Hordeum'][] [153] [154] [155] [156] [157] LaTeX Warning: Reference `sec:orchids' on page 158 undefined on input line 347. [158] Overfull \hbox (24.29903pt too wide) in paragraph at lines 366--367 []\OT1/cmr/m/n/10 If the ac-ces-sion num-ber you pro-vided to [][]\OT1/cmtt/m/n /10 ExPASy.get_sprot_raw []\OT1/cmr/m/n/10 does not ex-ist, then [][]\OT1/cmtt/ m/n/10 SwissProt.read(handle) Overfull \hbox (65.93893pt too wide) in paragraph at lines 409--410 []\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m en-ta-tion record and parse it into a [][]\OT1/cmtt/m/n/10 Bio.ExPASy.Prodoc.Re cord [159] Overfull \hbox (133.98972pt too wide) in paragraph at lines 493--493 []\OT1/cmtt/m/n/10 {'signature_ac': u'PS50948', 'level': u'0', 'stop': 98, 'seq uence_ac': u'USERSEQ1', 'start': 16, 'score': u'8.873'}[] [160]) [161] (./Tutorial/chapter_pdb.tex Chapter 11. LaTeX Warning: Reference `problem structures' on page 162 undefined on input li ne 18. [162] [163] Overfull \hbox (13.022pt too wide) in paragraph at lines 194--196 \OT1/cmr/m/n/10 The over-all lay-out of a \OT1/cmtt/m/n/10 Structure \OT1/cmr/m /n/10 ob-ject fol-lows the so-called SM-CRA (Struc-ture/-Mod-el/Chain/Residue/A tom) [164] LaTeX Warning: Reference `fig:smcra' on page 165 undefined on input line 207. LaTeX Warning: Reference `problem structures' on page 165 undefined on input li ne 216. Excluding 'htmlonly' comment. [165] [166 <./images/smcra.png (PNG copy)>] [167] LaTeX Warning: Reference `hetero problems' on page 168 undefined on input line 353. LaTeX Warning: Reference `point mutations' on page 168 undefined on input line 398. LaTeX Warning: Reference `disordered atoms' on page 168 undefined on input line 415. [168] [169] LaTeX Warning: Reference `fig:smcra' on page 170 undefined on input line 540. [170] LaTeX Warning: Reference `fig:smcra' on page 171 undefined on input line 586. [171] [172] [173] [174] LaTeX Warning: Citation `golub1989' on page 175 undefined on input line 870. [175] LaTeX Warning: Citation `hamelryck2005' on page 176 undefined on input line 898 . LaTeX Warning: Command \r invalid in math mode on input line 901. LaTeX Warning: Reference `cap:DSSP-codes' on page 176 undefined on input line 9 33. LaTeX Warning: Reference `subsec:residue_depth' on page 176 undefined on input line 972. [176] LaTeX Warning: Citation `hamelryck2003a' on page 177 undefined on input line 10 22. [177] [178] [179] LaTeX Warning: Citation `hamelryck2003b' on page 180 undefined on input line 12 34. LaTeX Warning: Citation `majumdar2005' on page 180 undefined on input line 1235 . [180]) [181] (./Tutorial/chapter_popgen.tex Chapter 12. [182]) [183] (./Tutorial/chapter_phylo.tex Chapter 13. LaTeX Warning: Citation `talevich2012' on page 184 undefined on input line 9. [184] LaTeX Warning: Reference `fig:phylo-simple-draw' on page 185 undefined on input line 96. Excluding 'htmlonly' comment. [185] Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor LaTeX Warning: Reference `fig:phylo-color-draw' on page 186 undefined on input line 192. [186 <./images/phylo-simple-draw.png>] Excluding 'htmlonly' comment. [187 <./im ages/phylo-color-draw.png>] [188] Overfull \hbox (406.98734pt too wide) in paragraph at lines 328--328 []\OT1/cmtt/m/n/10 Phylogeny(description='phyloXML allows to use either a "bran ch_length" attribute...', name='example from Prof. Joe Felsenstein's book "Infe rring Phyl...', rooted=True)[] Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:phylo-dot' on page 189 undefined on input line 37 6. Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:phylo-rooted' on page 189 undefined on input line 412. Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:phylo-color' on page 189 undefined on input line 428. [189] [190 <./images/phylo-draw-example.png> <./images/phylo-dot.png>] Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:phylo-apaf' on page 191 undefined on input line 4 62. LaTeX Warning: Reference `fig:phylo-apaf-zoom' on page 191 undefined on input l ine 462. Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:phylo-apaf' on page 191 undefined on input line 4 87. [191 <./images/phylo-rooted.png> <./images/phylo-color.png>] [192 <./images/phy lo-apaf.png> <./images/phylo-apaf-zoom.png>] Overfull \hbox (19.85507pt too wide) in paragraph at lines 559--566 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [193] Overfull \hbox (13.48741pt too wide) in paragraph at lines 614--617 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [194] [195] Overfull \hbox (4.04672pt too wide) in paragraph at lines 825--828 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- LaTeX Warning: Reference `sec:alignment-tools' on page 196 undefined on input l ine 832. [196] LaTeX Warning: Reference `sec:PhyloXML' on page 197 undefined on input line 903 . [197]) [198] (./Tutorial/chapter_motifs.tex Chapter 14. LaTeX Warning: Reference `sec:links' on page 199 undefined on input line 7. [199] [200] LaTeX Warning: Citation `cornish1985' on page 201 undefined on input line 152. LaTeX Warning: Citation `cavener1987' on page 201 undefined on input line 153. [201] [202] Overfull \hbox (128.73976pt too wide) in paragraph at lines 270--270 []\OT1/cmtt/m/n/10 [Seq('CACGTG', IUPACUnambiguousDNA()), Seq('CACGTG', IUPACUn ambiguousDNA()), Seq('CACGTG', IUPACUnambiguousDNA())][] [203] [204] [205] [206] [207] LaTeX Warning: Citation `bailey1994' on page 208 undefined on input line 522. [208] Overfull \hbox (13.10551pt too wide) in paragraph at lines 582--586 \OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 motifs.parse []\OT1/cmr/m/n/10 com-man d reads the com-plete file di-rectly, so you can close the file af-ter call-ing [][]\OT1/cmtt/m/n/10 motifs.parse[]\OT1/cmr/m/n/10 . [209] [210] LaTeX Warning: Citation `matys2003' on page 211 undefined on input line 658. [211] LaTeX Warning: Reference `table:transfaccodes' on page 212 undefined on input l ine 733. LaTeX Warning: `h' float specifier changed to `ht'. [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223]) [224] (./Tutorial/chapter_cluster.tex Chapter 15. LaTeX Warning: Citation `dehoon2004' on page 225 undefined on input line 5. LaTeX Warning: Citation `lecuyer1988' on page 225 undefined on input line 29. LaTeX Warning: Citation `kachitvichyanukul1988' on page 225 undefined on input line 29. [225] [226] [227] LaTeX Warning: Citation `snedecor1989' on page 228 undefined on input line 153. [228] LaTeX Warning: Reference `sec:distancefunctions' on page 229 undefined on input line 182. [229] Overfull \hbox (78.60634pt too wide) in paragraph at lines 230--231 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ [230] LaTeX Warning: Reference `sec:distancefunctions' on page 231 undefined on input line 263. [231] [232] LaTeX Warning: Reference `sec:distancefunctions' on page 233 undefined on input line 331. [233] [234] Overfull \hbox (16.73593pt too wide) in paragraph at lines 413--414 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. The items be-ing clus-tered are num-bered from 0 to $[]$, [235] [236] LaTeX Warning: Reference `sec:distancefunctions' on page 237 undefined on input line 546. [237] LaTeX Warning: Citation `kohonen1997' on page 238 undefined on input line 594. LaTeX Warning: Citation `tamayo1999' on page 238 undefined on input line 594. [238] [239] LaTeX Warning: Reference `sec:distancefunctions' on page 240 undefined on input line 641. Overfull \hbox (106.77225pt too wide) in paragraph at lines 648--650 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ LaTeX Warning: Citation `yeung2001' on page 240 undefined on input line 654. LaTeX Warning: Citation `golub1971' on page 240 undefined on input line 662. [240] Overfull \hbox (175.98935pt too wide) in paragraph at lines 707--707 []\OT1/cmtt/m/n/10 >>> handle = TextIOWrapper(urlopen("https://raw.githubuserco ntent.com/biopython/biopython/master/Tests/Cluster/cyano.txt"))[] Overfull \hbox (97.24004pt too wide) in paragraph at lines 715--715 []\OT1/cmtt/m/n/10 >>> handle = urlopen("https://raw.githubusercontent.com/biop ython/biopython/master/Tests/Cluster/cyano.txt")[] [241] Overfull \hbox (25.39864pt too wide) in paragraph at lines 740--751 [] [242] LaTeX Warning: Reference `sec:distancefunctions' on page 243 undefined on input line 803. LaTeX Warning: Reference `subsec:distancematrix' on page 243 undefined on input line 806. LaTeX Warning: Reference `subsec:clustercentroids' on page 243 undefined on inp ut line 824. [243] LaTeX Warning: Reference `sec:distancefunctions' on page 244 undefined on input line 847. LaTeX Warning: Reference `sec:distancefunctions' on page 244 undefined on input line 872. [244] LaTeX Warning: Reference `sec:distancefunctions' on page 245 undefined on input line 901. [245] LaTeX Warning: Reference `sec:distancefunctions' on page 246 undefined on input line 923. Overfull \hbox (106.77225pt too wide) in paragraph at lines 930--932 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ [246] LaTeX Warning: Citation `hihara2001' on page 247 undefined on input line 955. ) Overfull \hbox (26.21434pt too wide) in paragraph at lines 986--111 []\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result _K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT 1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 . [247] (./Tutorial/chapter_learning.tex Chapter 16. [248] LaTeX Warning: Reference `eq:OP' on page 249 undefined on input line 39. LaTeX Warning: Reference `eq:NOP' on page 249 undefined on input line 39. LaTeX Warning: Reference `table:training' on page 249 undefined on input line 7 4. [249] [250] [251] LaTeX Warning: Reference `eq:OP' on page 252 undefined on input line 210. LaTeX Warning: Reference `eq:NOP' on page 252 undefined on input line 210. [252] LaTeX Warning: Reference `eq:OP' on page 253 undefined on input line 272. LaTeX Warning: Reference `eq:NOP' on page 253 undefined on input line 272. LaTeX Warning: Reference `eq:OP' on page 253 undefined on input line 274. LaTeX Warning: Reference `eq:NOP' on page 253 undefined on input line 274. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 278. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 278. LaTeX Warning: Reference `sec:LogisticRegression' on page 253 undefined on inpu t line 284. [253] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 286. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 286. LaTeX Warning: Reference `table:training' on page 254 undefined on input line 2 88. LaTeX Warning: Reference `subsec:LogisticRegressionTraining' on page 254 undefi ned on input line 296. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 298. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 298. [254] [255]) [256] (./Tutorial/chapter_graphics.tex Chapter 17. LaTeX Warning: Citation `pritchard2006' on page 257 undefined on input line 18. LaTeX Warning: Citation `toth2006' on page 257 undefined on input line 28. 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LaTeX Warning: Reference `sec:gd_multiple_tracks' on page 271 undefined on inpu t line 658. LaTeX Warning: Citation `proux2002' on page 271 undefined on input line 678. [271 <./images/three_track_simple.png>] [272] Overfull \hbox (28.99063pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 color = colors.linearlyInterpolatedColor(colors.whit e, colors.firebrick, 0, 100, score)[] Overfull \hbox (2.65141pt too wide) in paragraph at lines 784--790 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:three_track_cl' on page 273 undefined on input li ne 805. LaTeX Warning: Reference `sec:gd_cross_links' on page 273 undefined on input li ne 812. LaTeX Warning: Reference `sec:gd_cross_links' on page 273 undefined on input li ne 812. Excluding 'htmlonly' comment. 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[284] Overfull \hbox (48.7407pt too wide) in paragraph at lines 102--102 []\OT1/cmtt/m/n/10 PlateRecord('WellRecord['A01'], WellRecord['A02'], WellReco rd['A03'], ..., WellRecord['A12']')[] Overfull \hbox (48.7407pt too wide) in paragraph at lines 102--102 []\OT1/cmtt/m/n/10 PlateRecord('WellRecord['A01'], WellRecord['B01'], WellReco rd['C01'], ..., WellRecord['H01']')[] Overfull \hbox (48.7407pt too wide) in paragraph at lines 102--102 []\OT1/cmtt/m/n/10 PlateRecord('WellRecord['A01'], WellRecord['A02'], WellReco rd['A03'], ..., WellRecord['C03']')[] [285] [286] [287]) [288] (./Tutorial/chapter_cookbook.tex Chapter 20. LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 289 undefined on input lin e 22. [289] LaTeX Warning: Reference `sec:low-level-fasta-fastq' on page 290 undefined on i nput line 58. [290] LaTeX Warning: Reference `sec:Bio.SeqIO-and-StringIO' on page 291 undefined on input line 146. LaTeX Warning: Reference `sec:translation' on page 291 undefined on input line 192. 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[309 <./images/SRR001666.png>] [310] Overfull \hbox (49.0755pt too wide) in paragraph at lines 1460--1461 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . [311] LaTeX Warning: Reference `sec:summary_info' on page 312 undefined on input line 1497. LaTeX Warning: Reference `sec:freq_table' on page 312 undefined on input line 1 516. [312] LaTeX Warning: Reference `sec:align_clustal' on page 313 undefined on input lin e 1603. LaTeX Warning: Reference `sec:summary_info' on page 313 undefined on input line 1603. [313] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 314 undefined on input lin e 1701. [314]) [315] (./Tutorial/chapter_testing.tex Chapter 21. LaTeX Warning: Reference `section:doctest' on page 316 undefined on input line 49. [316] [317] [318] [319] [320] [321] LaTeX Warning: Reference `section:doctest' on page 322 undefined on input line 409. 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Transcript written on Tutorial.log. pdflatex Tutorial.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./Tutorial.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 65. 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Excluding 'rawhtml' comment. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.m ap} <./images/biopython_logo.pdf>] (./Tutorial.tocpdfTeX warning (ext4): destin ation with the same identifier (name{page.1}) has been already used, duplicate ignored \relax l.39 ...tions and locations}{33}{subsection.4.3.2} % [1] [2] [3] [4] [5] [6] [7]) [8] (./Tutorial/chapter_introduction.tex Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) [9] [10] Excluding 'rawhtml' comment. Underfull \hbox (badness 10000) in paragraph at lines 141--147 Underfull \hbox (badness 10000) in paragraph at lines 153--155 [11 <./images/biopython_logo_old.jpg>] [12] Overfull \hbox (2.99303pt too wide) in paragraph at lines 246--248 \OT1/cmr/m/n/10 Check the built in doc-strings (\OT1/cmtt/m/n/10 from Bio impor t SeqIO\OT1/cmr/m/n/10 , then \OT1/cmtt/m/n/10 help(SeqIO)\OT1/cmr/m/n/10 ), or see [][]$\OT1/cmtt/m/n/10 http : / / biopython . [13]) [14] (./Tutorial/chapter_quick_start.tex Chapter 2. 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[35] [36] Overfull \hbox (2.74086pt too wide) in paragraph at lines 129--129 []\OT1/cmtt/m/n/10 >gi|45478711|ref|NC_005816.1| Yersinia pestis biovar Microtu s ... pPCP1, complete sequence[] Overfull \hbox (34.24059pt too wide) in paragraph at lines 144--144 []\OT1/cmtt/m/n/10 SingleLetterAlphabet()), id='gi|45478711|ref|NC_005816.1|', name='gi|45478711|ref|NC_005816.1|',[] Overfull \hbox (7.99081pt too wide) in paragraph at lines 153--153 []\OT1/cmtt/m/n/10 Seq('TGTAACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGG. ..CTG', SingleLetterAlphabet())[] Overfull \hbox (7.99081pt too wide) in paragraph at lines 169--169 []\OT1/cmtt/m/n/10 'gi|45478711|ref|NC_005816.1| Yersinia pestis biovar Microtu s ... pPCP1, complete sequence'[] [37] Overfull \hbox (7.99081pt too wide) in paragraph at lines 226--226 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [38] [39] [40] [41] [42] Overfull \hbox (44.7405pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 >>> example_parent = Seq("ACCGAGACGGCAAAGGCTAGCATAGGTATGAGAC TTCCTTCCTGCCAGTGCTGAGGAACTGGGAGCCTAC")[] Overfull \hbox (128.73976pt too wide) in paragraph at lines 546--546 []\OT1/cmtt/m/n/10 >>> feature_seq = example_parent[example_feature.location.st art:example_feature.location.end].reverse_complement()[] [43] Overfull \hbox (165.48944pt too wide) in paragraph at lines 618--618 []\OT1/cmtt/m/n/10 NotImplementedError: SeqRecord comparison is deliberately no t implemented. Explicitly compare the attributes of interest.[] [44] Overfull \hbox (2.74086pt too wide) in paragraph at lines 703--703 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence',[] [45] Overfull \hbox (7.99081pt too wide) in paragraph at lines 762--762 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [46] Overfull \hbox (39.49054pt too wide) in paragraph at lines 839--839 []\OT1/cmtt/m/n/10 >>> sub_record.description = "Yersinia pestis biovar Microtu s str. 91001 plasmid pPCP1, partial."[] [47] Overfull \hbox (7.99081pt too wide) in paragraph at lines 930--930 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [48] Overfull \hbox (7.99081pt too wide) in paragraph at lines 960--960 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [49] Overfull \hbox (170.7394pt too wide) in paragraph at lines 1032--1032 []\OT1/cmtt/m/n/10 >>> print("%s %i %i %i %i" % (record.id, len(record), len(re cord.features), len(record.dbxrefs), len(record.annotations)))[] Overfull \hbox (65.74031pt too wide) in paragraph at lines 1042--1042 []\OT1/cmtt/m/n/10 >>> print("%s %i %i %i %i" % (rc.id, len(rc), len(rc.feature s), len(rc.dbxrefs), len(rc.annotations)))[] ) [50] (./Tutorial/chapter_seqio.tex Chapter 5. [51] Overfull \hbox (7.99081pt too wide) in paragraph at lines 66--66 []\OT1/cmtt/m/n/10 >>> identifiers = [seq_record.id for seq_record in SeqIO.par se("ls_orchid.gbk", "genbank")][] [52] [53] [54] [55] [56] Overfull \hbox (18.49072pt too wide) in paragraph at lines 391--391 []\OT1/cmtt/m/n/10 with Entrez.efetch(db="nucleotide", rettype="fasta", retmode ="text", id="6273291") as handle:[] [57] Overfull \hbox (23.74068pt too wide) in paragraph at lines 438--438 [] \OT1/cmtt/m/n/10 % (len(seq_record), len(seq_record.features), seq_record.annotations["source"]))[] Overfull \hbox (18.49072pt too wide) in paragraph at lines 482--482 []\OT1/cmtt/m/n/10 RecName: Full=Chalcone synthase 3; EC=2.3.1.74; AltName: Ful l=Naringenin-chalcone synthase 3;[] [58] [59] Overfull \hbox (34.24059pt too wide) in paragraph at lines 609--609 []\OT1/cmtt/m/n/10 orchid_dict = SeqIO.to_dict(SeqIO.parse("ls_orchid.fasta", " fasta"), key_function=get_accession)[] [60] [61] Overfull \hbox (9.93459pt too wide) in paragraph at lines 769--774 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / [62] Overfull \hbox (4.48064pt too wide) in paragraph at lines 812--815 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , [63] [64] [65] [66] [67] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1174--1174 []\OT1/cmtt/m/n/10 >>> records = [rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1184--1184 []\OT1/cmtt/m/n/10 >>> records = [rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1192--1192 []\OT1/cmtt/m/n/10 >>> records = (rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] [68] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1203--1203 []\OT1/cmtt/m/n/10 >>> records = (rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] Overfull \hbox (19.46596pt too wide) in paragraph at lines 1240--1242 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) [69] Overfull \hbox (21.32593pt too wide) in paragraph at lines 1284--1288 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator ) [70] (./Tutorial/chapter_align.tex Chapter 6. [71] [72] [73] [74] [75] [76] [77] [78] Overfull \hbox (5.54102pt too wide) in paragraph at lines 435--436 \OT1/cmr/m/n/10 ever you can't do that when your records come from a gen-er-a-t or/it-er-a-tor. There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 443--448 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() [79] [80] [81] Overfull \hbox (16.49278pt too wide) in paragraph at lines 619--622 []\OT1/cmr/m/n/10 Internally the [][]\OT1/cmtt/m/n/10 format() []\OT1/cmr/m/n/1 0 method is us-ing the [][]\OT1/cmtt/m/n/10 StringIO []\OT1/cmr/m/n/10 string b ased han-dle and call-ing [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write()[]\OT1/cmr/m/ n/10 . [82] [83] [84] [85] [86] [87] Overfull \hbox (8.40039pt too wide) in paragraph at lines 1057--1061 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO [88] [89] [90] Overfull \hbox (23.74068pt too wide) in paragraph at lines 1316--1316 []\OT1/cmtt/m/n/10 needle -outfile=needle.txt -asequence=alpha.faa -bsequence=b eta.faa -gapopen=10 -gapextend=0.5[] [91] Overfull \hbox (23.74068pt too wide) in paragraph at lines 1364--1364 []\OT1/cmtt/m/n/10 needle -outfile=needle.txt -asequence=alpha.faa -bsequence=b eta.faa -gapopen=10 -gapextend=0.5[] [92] [93] [94] [95] [96] Overfull \hbox (175.46193pt too wide) in paragraph at lines 1776--1813 [][] [97] [98] [99] [100] [101] Overfull \hbox (19.80069pt too wide) in paragraph at lines 2013--2014 \OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing [][]\OT1/cmtt/m/n/10 len(alignments) [102] [103]) [104] (./Tutorial/chapter_blast.tex Chapter 7. [105] [106] [107] LaTeX Warning: Reference `sec:parsing-blast-deprecated' on page 108 undefined o n input line 268. [108] [109] Overfull \hbox (55.2404pt too wide) in paragraph at lines 436--436 []\OT1/cmtt/m/n/10 sequence: >gb|AF283004.1|AF283004 Arabidopsis thaliana cold acclimation protein WCOR413-like protein[] [110] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment.) [111] [112 <./images/BlastRecord.png>] [113 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. [114] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult [115] [116] [117] [118] [119] Overfull \hbox (44.7405pt too wide) in paragraph at lines 462--462 []\OT1/cmtt/m/n/10 ... hit.id = hit.id.split("|")[3] # renames "gi|301171 322|ref|NR_035857.1|" to "NR_035857.1"[] [120] [121] [122] [123] Overfull \hbox (469.98679pt too wide) in paragraph at lines 731--731 []\OT1/cmtt/m/n/10 SeqRecord(seq=Seq('CCCTCTACAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGA AAGTGCTTCCTTT...GGG', DNAAlphabet()), id='42291', name='aligned query sequence' , description='mystery_seq', dbxrefs=[])[] Overfull \hbox (769.23418pt too wide) in paragraph at lines 731--731 []\OT1/cmtt/m/n/10 SeqRecord(seq=Seq('CCCTCTACAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGA AAGTGCTTCCTTT...GGG', DNAAlphabet()), id='gi|262205317|ref|NR_030195.1|', name= 'aligned hit sequence', description='Homo sapiens microRNA 520b (MIR520B), micr oRNA', dbxrefs=[])[] Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment [124] [125] Overfull \hbox (65.74031pt too wide) in paragraph at lines 870--870 []\OT1/cmtt/m/n/10 >>> blat_hsp2.hit_inter_ranges # start and end coordinates of intervening regions in the hit sequence[] [126] Overfull \hbox (769.23418pt too wide) in paragraph at lines 962--962 []\OT1/cmtt/m/n/10 SeqRecord(seq=Seq('CCCTCTACAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGA AAGTGCTTCCTTT...GGG', DNAAlphabet()), id='gi|262205317|ref|NR_030195.1|', name= 'aligned hit sequence', description='Homo sapiens microRNA 520b (MIR520B), micr oRNA', dbxrefs=[])[] [127] Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . [128] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 >>> idx = SearchIO.index("tab_2226_tblastn_001.txt", "blast- tab", key_function=key_function)[] Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse [129]) [130] (./Tutorial/chapter_entrez.tex Chapter 9. [131] [132] [133] [134] Overfull \hbox (70.99026pt too wide) in paragraph at lines 224--224 []\OT1/cmtt/m/n/10 >>> handle = Entrez.esearch(db="nucleotide", term="Cypripedi oideae[Orgn] AND matK[Gene]", idtype="acc")[] [135] [136] [137] [138] Overfull \hbox (13.24077pt too wide) in paragraph at lines 450--450 [] \OT1/cmtt/m/n/10 net_handle = Entrez.efetch(db="nucleotide", id="EU490707 ", rettype="gb", retmode="text")[] [139] [140] [141] [142] Overfull \hbox (312.48816pt too wide) in paragraph at lines 677--677 []\OT1/cmtt/m/n/10 Bio.Entrez.Parser.NotXMLError: Failed to parse the XML data (syntax error: line 1, column 0). Please make sure that the input data are in X ML format.[] [143] Overfull \hbox (249.48871pt too wide) in paragraph at lines 698--698 []\OT1/cmtt/m/n/10 [] Overfull \hbox (370.23766pt too wide) in paragraph at lines 705--705 []\OT1/cmtt/m/n/10 Bio.Entrez.Parser.CorruptedXMLError: Failed to parse the XML data (no element found: line 16, column 0). Please make sure that the input da ta are not corrupted.[] Overfull \hbox (249.48871pt too wide) in paragraph at lines 736--736 []\OT1/cmtt/m/n/10 [] [144] Overfull \hbox (585.48578pt too wide) in paragraph at lines 748--748 []\OT1/cmtt/m/n/10 Bio.Entrez.Parser.ValidationError: Failed to find tag 'Docsu mList' in the DTD. To skip all tags that are not represented in the DTD, please call Bio.Entrez.read or Bio.Entrez.parse with validate=False.[] [145] [146] [147] Overfull \hbox (133.98972pt too wide) in paragraph at lines 970--970 []\OT1/cmtt/m/n/10 EXPRESS bone| connective tissue| intestine| liver| live r tumor| normal| soft tissue/muscle tissue tumor| adult[] Overfull \hbox (102.48999pt too wide) in paragraph at lines 970--970 []\OT1/cmtt/m/n/10 SEQUENCE ACC=BG569293.1; NID=g13576946; CLONE=IMAGE:47225 96; END=5'; LID=6989; SEQTYPE=EST; TRACE=44157214[] [148] Overfull \hbox (160.23949pt too wide) in paragraph at lines 992--992 []\OT1/cmtt/m/n/10 ['bone', 'connective tissue', 'intestine', 'liver', 'liver t umor', 'normal', 'soft tissue/muscle tissue tumor', 'adult'][] [149] [150] Overfull \hbox (23.74068pt too wide) in paragraph at lines 1152--1152 []\OT1/cmtt/m/n/10 >>> handle = Entrez.esearch(db="nucleotide", term="Cypripedi oideae", retmax=814, idtype="acc")[] [151] [152] [153] [154] [155] [156] [157]) [158] (./Tutorial/chapter_uniprot.tex Chapter 10. Overfull \hbox (216.73924pt too wide) in paragraph at lines 30--30 []\OT1/cmtt/m/n/10 >>> handle = TextIOWrapper(urlopen("https://raw.githubuserc ontent.com/biopython/biopython/master/Tests/SwissProt/F2CXE6.txt"))[] Overfull \hbox (137.98993pt too wide) in paragraph at lines 39--39 []\OT1/cmtt/m/n/10 >>> handle = urlopen("https://raw.githubusercontent.com/bio python/biopython/master/Tests/SwissProt/F2CXE6.txt")[] [159] Overfull \hbox (270.48853pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 SubName: Full=Plasma membrane intrinsic protein {ECO:0000313 |EMBL:BAN04711.1}; SubName: Full=Predicted protein {ECO:0000313|EMBL:BAJ87517.1 };[] Overfull \hbox (359.73775pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 authors: Matsumoto T., Tanaka T., Sakai H., Amano N., Kanamo ri H., Kurita K., Kikuta A., Kamiya K., Yamamoto M., Ikawa H., Fujii N., Hori K ., Itoh T., Sato K.[] Overfull \hbox (86.74013pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 title: Comprehensive sequence analysis of 24,783 barley full -length cDNAs derived from 12 clone libraries.[] Overfull \hbox (553.98605pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta' , 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'Liliopsida', 'Poales', 'Po aceae', 'BEP clade', 'Pooideae', 'Triticeae', 'Hordeum'][] Overfull \hbox (7.99081pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 title: Functional characterization of a novel plasma membran e intrinsic protein2 in barley.[] Overfull \hbox (553.98605pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta' , 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'Liliopsida', 'Poales', 'Po aceae', 'BEP clade', 'Pooideae', 'Triticeae', 'Hordeum'][] Overfull \hbox (553.98605pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta' , 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'Liliopsida', 'Poales', 'Po aceae', 'BEP clade', 'Pooideae', 'Triticeae', 'Hordeum'][] [160] [161] [162] [163] [164] [165] Overfull \hbox (24.29903pt too wide) in paragraph at lines 366--367 []\OT1/cmr/m/n/10 If the ac-ces-sion num-ber you pro-vided to [][]\OT1/cmtt/m/n /10 ExPASy.get_sprot_raw []\OT1/cmr/m/n/10 does not ex-ist, then [][]\OT1/cmtt/ m/n/10 SwissProt.read(handle) Overfull \hbox (65.93893pt too wide) in paragraph at lines 409--410 []\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m en-ta-tion record and parse it into a [][]\OT1/cmtt/m/n/10 Bio.ExPASy.Prodoc.Re cord [166] Overfull \hbox (133.98972pt too wide) in paragraph at lines 493--493 []\OT1/cmtt/m/n/10 {'signature_ac': u'PS50948', 'level': u'0', 'stop': 98, 'seq uence_ac': u'USERSEQ1', 'start': 16, 'score': u'8.873'}[] [167]) [168] (./Tutorial/chapter_pdb.tex Chapter 11. [169] [170] Overfull \hbox (13.022pt too wide) in paragraph at lines 194--196 \OT1/cmr/m/n/10 The over-all lay-out of a \OT1/cmtt/m/n/10 Structure \OT1/cmr/m /n/10 ob-ject fol-lows the so-called SM-CRA (Struc-ture/-Mod-el/Chain/Residue/A tom) [171] Excluding 'htmlonly' comment. [172] [173 <./images/smcra.png (PNG copy)>] [174] [175] [176] [177] [178] [179] [180] [181] [182] LaTeX Warning: Command \r invalid in math mode on input line 901. [183] [184] [185] [186] [187]) [188] (./Tutorial/chapter_popgen.tex Chapter 12. [189]) [190] (./Tutorial/chapter_phylo.tex Chapter 13. [191] Excluding 'htmlonly' comment. [192] Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor [193 <./images/phylo-simple-draw.png>] Excluding 'htmlonly' comment. [194 <./im ages/phylo-color-draw.png>] [195] Overfull \hbox (406.98734pt too wide) in paragraph at lines 328--328 []\OT1/cmtt/m/n/10 Phylogeny(description='phyloXML allows to use either a "bran ch_length" attribute...', name='example from Prof. Joe Felsenstein's book "Infe rring Phyl...', rooted=True)[] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [196] [197 <./images/phylo-draw-example.png> <./i mages/phylo-dot.png>] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [198 <./images/phylo-rooted.png> <./images/phylo- color.png>] [199 <./images/phylo-apaf.png> <./images/phylo-apaf-zoom.png>] Overfull \hbox (19.85507pt too wide) in paragraph at lines 559--566 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [200] Overfull \hbox (13.48741pt too wide) in paragraph at lines 614--617 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [201] [202] Overfull \hbox (4.04672pt too wide) in paragraph at lines 825--828 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- [203] [204]) [205] (./Tutorial/chapter_motifs.tex Chapter 14. [206] [207] [208] [209] Overfull \hbox (128.73976pt too wide) in paragraph at lines 270--270 []\OT1/cmtt/m/n/10 [Seq('CACGTG', IUPACUnambiguousDNA()), Seq('CACGTG', IUPACUn ambiguousDNA()), Seq('CACGTG', IUPACUnambiguousDNA())][] [210] [211] [212] [213] [214] [215] Overfull \hbox (13.10551pt too wide) in paragraph at lines 582--586 \OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 motifs.parse []\OT1/cmr/m/n/10 com-man d reads the com-plete file di-rectly, so you can close the file af-ter call-ing [][]\OT1/cmtt/m/n/10 motifs.parse[]\OT1/cmr/m/n/10 . [216] [217] [218] LaTeX Warning: `h' float specifier changed to `ht'. [219] [220] [221] [222] [223] [224] [225] [226] [227] [228] [229] [230]) [231] (./Tutorial/chapter_cluster.tex Chapter 15. [232] [233] [234] [235] [236] Overfull \hbox (78.60634pt too wide) in paragraph at lines 230--231 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ [237] [238] [239] [240] [241] Overfull \hbox (16.73593pt too wide) in paragraph at lines 413--414 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. The items be-ing clus-tered are num-bered from 0 to $[]$, [242] [243] [244] [245] [246] Overfull \hbox (106.77225pt too wide) in paragraph at lines 648--650 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ [247] Overfull \hbox (175.98935pt too wide) in paragraph at lines 707--707 []\OT1/cmtt/m/n/10 >>> handle = TextIOWrapper(urlopen("https://raw.githubuserco ntent.com/biopython/biopython/master/Tests/Cluster/cyano.txt"))[] Overfull \hbox (97.24004pt too wide) in paragraph at lines 715--715 []\OT1/cmtt/m/n/10 >>> handle = urlopen("https://raw.githubusercontent.com/biop ython/biopython/master/Tests/Cluster/cyano.txt")[] [248] Overfull \hbox (25.39864pt too wide) in paragraph at lines 740--751 [] [249] [250] [251] [252] Overfull \hbox (106.77225pt too wide) in paragraph at lines 930--932 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ [253]) Overfull \hbox (26.21434pt too wide) in paragraph at lines 986--111 []\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result _K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT 1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 . [254] (./Tutorial/chapter_learning.tex Chapter 16. [255] [256] [257] [258] [259] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 278. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 278. [260] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 286. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 286. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 298. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 298. [261] [262]) [263] (./Tutorial/chapter_graphics.tex Chapter 17. [264] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [265] [266 <./images/plasmid_linear.png (PNG copy)> <./images/plasmid_circular.png (P NG copy)>] [267] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [268] [269 <./images/GD_sigil_labels.png (PNG copy)>] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [270] [271 <./images/GD_sigils.png>] [272 <./imag es/GD_sigil_arrow_shafts.png>] Excluding 'htmlonly' comment. [273 <./images/GD_ sigil_arrow_heads.png>] [274] Excluding 'htmlonly' comment. [275 <./images/plas mid_linear_nice.png (PNG copy)>] [276 <./images/plasmid_circular_nice.png>] Overfull \hbox (2.74086pt too wide) in paragraph at lines 605--605 []\OT1/cmtt/m/n/10 A_colors = [red]*5 + [grey]*7 + [orange]*2 + [grey]*2 + [ora nge] + [grey]*11 + [green]*4 \[] [277] Excluding 'htmlonly' comment. [278 <./images/three_track_simple.png>] [279] Overfull \hbox (28.99063pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 color = colors.linearlyInterpolatedColor(colors.whit e, colors.firebrick, 0, 100, score)[] Overfull \hbox (2.65141pt too wide) in paragraph at lines 784--790 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [280] [281 <./image s/three_track_cl.png>] [282 <./images/three_track_cl2a.png>] [283] [284 <./imag es/simple_chrom.pdf> <./images/tRNA_chrom.pdf>] [285] Excluding 'htmlonly' comment. [286] Excluding 'htmlonly' comment.) [287] (./Tutorial/chapter_kegg.tex Chapter 18. [288] [289]) [290] (./Tutorial/chapter_phenotype.tex Chapter 19. [291] Overfull \hbox (48.7407pt too wide) in paragraph at lines 102--102 []\OT1/cmtt/m/n/10 PlateRecord('WellRecord['A01'], WellRecord['A02'], WellReco rd['A03'], ..., WellRecord['A12']')[] Overfull \hbox (48.7407pt too wide) in paragraph at lines 102--102 []\OT1/cmtt/m/n/10 PlateRecord('WellRecord['A01'], WellRecord['B01'], WellReco rd['C01'], ..., WellRecord['H01']')[] Overfull \hbox (48.7407pt too wide) in paragraph at lines 102--102 []\OT1/cmtt/m/n/10 PlateRecord('WellRecord['A01'], WellRecord['A02'], WellReco rd['A03'], ..., WellRecord['C03']')[] [292] [293] [294]) [295] (./Tutorial/chapter_cookbook.tex Chapter 20. [296] [297] [298] [299] [300] [301] Overfull \hbox (5.83499pt too wide) in paragraph at lines 426--430 \OT1/cmr/m/n/10 mat (e.g. FASTA files). How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator Overfull \hbox (4.57849pt too wide) in paragraph at lines 444--446 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . [302] [303] [304] [305] Overfull \hbox (7.99081pt too wide) in paragraph at lines 765--765 []\OT1/cmtt/m/n/10 Seq('GTCCCAGTATTCGGATTTGTCTGCCAAAACAATGAAATTGACACAGTTTACAAC. ..CCG', SingleLetterAlphabet())[] [306] [307] [308] [309] Excluding 'htmlonly' comment. Overfull \hbox (4.00363pt too wide) in paragraph at lines 1057--1060 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) [310] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [311 <./image s/hist_plot.png>] [312 <./images/gc_plot.png>] Excluding 'htmlonly' comment. [313 <./images/dot_plot.png>] Excluding 'htmlonly' comment. [314] Excluding 'htmlonly' comment. [315 <./images/dot_plot_scatter.png>] [316 <./ima ges/SRR001666.png>] [317] Overfull \hbox (49.0755pt too wide) in paragraph at lines 1460--1461 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . [318] [319] [320] [321]) [322] (./Tutorial/chapter_testing.tex Chapter 21. [323] [324] [325] [326] [327] [328] [329] (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmr.fd)) [330] (./Tutorial/chapter_advanced.tex Chapter 22. [331] [332] Overfull \hbox (30.74179pt too wide) in paragraph at lines 198--199 [][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the log-odds val-ues. Each en-try is gen-er-ated by log(LOM[key])*factor [333] [334]) [335] (./Tutorial/chapter_contributing.tex Chapter 23. [336] [337]) [338] (./Tutorial/chapter_appendix.tex Chapter 24. [339]) [340] [341] [342] [343] (./Tutorial.aux (./Tutorial/chapter_introduction.aux) (./Tutorial/chapter_quick_start.aux) (./Tutorial/chapter_seq_objects.aux) (./Tutorial/chapter_seq_annot.aux) (./Tutorial/chapter_seqio.aux) (./Tutorial/chapter_align.aux) (./Tutorial/chapter_blast.aux) (./Tutorial/chapter_searchio.aux) (./Tutorial/chapter_entrez.aux) (./Tutorial/chapter_uniprot.aux) (./Tutorial/chapter_pdb.aux) (./Tutorial/chapter_popgen.aux) (./Tutorial/chapter_phylo.aux) (./Tutorial/chapter_motifs.aux) (./Tutorial/chapter_cluster.aux) (./Tutorial/chapter_learning.aux) (./Tutorial/chapter_graphics.aux) (./Tutorial/chapter_kegg.aux) (./Tutorial/chapter_phenotype.aux) (./Tutorial/chapter_cookbook.aux) (./Tutorial/chapter_testing.aux) (./Tutorial/chapter_advanced.aux) (./Tutorial/chapter_contributing.aux) (./Tutorial/chapter_appendix.aux)) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb> Output written on Tutorial.pdf (344 pages, 2486423 bytes). Transcript written on Tutorial.log. pdflatex Tutorial.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./Tutorial.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 65. 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Excluding 'rawhtml' comment. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.m ap} <./images/biopython_logo.pdf>] (./Tutorial.tocpdfTeX warning (ext4): destin ation with the same identifier (name{page.1}) has been already used, duplicate ignored \relax l.39 ...tions and locations}{40}{subsection.4.3.2} % [1] [2] [3] [4] [5] [6] [7]) [8] (./Tutorial/chapter_introduction.tex Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) [9] [10] Excluding 'rawhtml' comment. Underfull \hbox (badness 10000) in paragraph at lines 141--147 Underfull \hbox (badness 10000) in paragraph at lines 153--155 [11 <./images/biopython_logo_old.jpg>] [12] Overfull \hbox (2.99303pt too wide) in paragraph at lines 246--248 \OT1/cmr/m/n/10 Check the built in doc-strings (\OT1/cmtt/m/n/10 from Bio impor t SeqIO\OT1/cmr/m/n/10 , then \OT1/cmtt/m/n/10 help(SeqIO)\OT1/cmr/m/n/10 ), or see [][]$\OT1/cmtt/m/n/10 http : / / biopython . [13]) [14] (./Tutorial/chapter_quick_start.tex Chapter 2. [15] [16] Overfull \hbox (7.99081pt too wide) in paragraph at lines 117--117 []\OT1/cmtt/m/n/10 Seq('CGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGATGAGACCGTGG. ..CGC', SingleLetterAlphabet())[] Overfull \hbox (7.99081pt too wide) in paragraph at lines 117--117 []\OT1/cmtt/m/n/10 Seq('CATTGTTGAGATCACATAATAATTGATCGAGTTAATCTGGAGGATCTGTTTACT. ..GCC', SingleLetterAlphabet())[] [17] [18]) [19] (./Tutorial/chapter_seq_objects.tex Chapter 3. [20] [21] [22] [23] Overfull \hbox (39.49054pt too wide) in paragraph at lines 274--274 []\OT1/cmtt/m/n/10 >>> list_of_seqs = [Seq("ACGT", generic_dna), Seq("AACC", ge neric_dna), Seq("GGTT", generic_dna)][] Overfull \hbox (39.49054pt too wide) in paragraph at lines 285--285 []\OT1/cmtt/m/n/10 >>> list_of_seqs = [Seq("ACGT", generic_dna), Seq("AACC", ge neric_dna), Seq("GGTT", generic_dna)][] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33]) [34] (./Tutorial/chapter_seq_annot.tex Chapter 4. [35] [36] Overfull \hbox (2.74086pt too wide) in paragraph at lines 129--129 []\OT1/cmtt/m/n/10 >gi|45478711|ref|NC_005816.1| Yersinia pestis biovar Microtu s ... pPCP1, complete sequence[] Overfull \hbox (34.24059pt too wide) in paragraph at lines 144--144 []\OT1/cmtt/m/n/10 SingleLetterAlphabet()), id='gi|45478711|ref|NC_005816.1|', name='gi|45478711|ref|NC_005816.1|',[] Overfull \hbox (7.99081pt too wide) in paragraph at lines 153--153 []\OT1/cmtt/m/n/10 Seq('TGTAACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGG. ..CTG', SingleLetterAlphabet())[] Overfull \hbox (7.99081pt too wide) in paragraph at lines 169--169 []\OT1/cmtt/m/n/10 'gi|45478711|ref|NC_005816.1| Yersinia pestis biovar Microtu s ... pPCP1, complete sequence'[] [37] Overfull \hbox (7.99081pt too wide) in paragraph at lines 226--226 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [38] [39] [40] [41] [42] Overfull \hbox (44.7405pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 >>> example_parent = Seq("ACCGAGACGGCAAAGGCTAGCATAGGTATGAGAC TTCCTTCCTGCCAGTGCTGAGGAACTGGGAGCCTAC")[] Overfull \hbox (128.73976pt too wide) in paragraph at lines 546--546 []\OT1/cmtt/m/n/10 >>> feature_seq = example_parent[example_feature.location.st art:example_feature.location.end].reverse_complement()[] [43] Overfull \hbox (165.48944pt too wide) in paragraph at lines 618--618 []\OT1/cmtt/m/n/10 NotImplementedError: SeqRecord comparison is deliberately no t implemented. Explicitly compare the attributes of interest.[] [44] Overfull \hbox (2.74086pt too wide) in paragraph at lines 703--703 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence',[] [45] Overfull \hbox (7.99081pt too wide) in paragraph at lines 762--762 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [46] Overfull \hbox (39.49054pt too wide) in paragraph at lines 839--839 []\OT1/cmtt/m/n/10 >>> sub_record.description = "Yersinia pestis biovar Microtu s str. 91001 plasmid pPCP1, partial."[] [47] Overfull \hbox (7.99081pt too wide) in paragraph at lines 930--930 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [48] Overfull \hbox (7.99081pt too wide) in paragraph at lines 960--960 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [49] Overfull \hbox (170.7394pt too wide) in paragraph at lines 1032--1032 []\OT1/cmtt/m/n/10 >>> print("%s %i %i %i %i" % (record.id, len(record), len(re cord.features), len(record.dbxrefs), len(record.annotations)))[] Overfull \hbox (65.74031pt too wide) in paragraph at lines 1042--1042 []\OT1/cmtt/m/n/10 >>> print("%s %i %i %i %i" % (rc.id, len(rc), len(rc.feature s), len(rc.dbxrefs), len(rc.annotations)))[] ) [50] (./Tutorial/chapter_seqio.tex Chapter 5. [51] Overfull \hbox (7.99081pt too wide) in paragraph at lines 66--66 []\OT1/cmtt/m/n/10 >>> identifiers = [seq_record.id for seq_record in SeqIO.par se("ls_orchid.gbk", "genbank")][] [52] [53] [54] [55] [56] Overfull \hbox (18.49072pt too wide) in paragraph at lines 391--391 []\OT1/cmtt/m/n/10 with Entrez.efetch(db="nucleotide", rettype="fasta", retmode ="text", id="6273291") as handle:[] [57] Overfull \hbox (23.74068pt too wide) in paragraph at lines 438--438 [] \OT1/cmtt/m/n/10 % (len(seq_record), len(seq_record.features), seq_record.annotations["source"]))[] Overfull \hbox (18.49072pt too wide) in paragraph at lines 482--482 []\OT1/cmtt/m/n/10 RecName: Full=Chalcone synthase 3; EC=2.3.1.74; AltName: Ful l=Naringenin-chalcone synthase 3;[] [58] [59] Overfull \hbox (34.24059pt too wide) in paragraph at lines 609--609 []\OT1/cmtt/m/n/10 orchid_dict = SeqIO.to_dict(SeqIO.parse("ls_orchid.fasta", " fasta"), key_function=get_accession)[] [60] [61] Overfull \hbox (9.93459pt too wide) in paragraph at lines 769--774 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / [62] Overfull \hbox (4.48064pt too wide) in paragraph at lines 812--815 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , [63] [64] [65] [66] [67] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1174--1174 []\OT1/cmtt/m/n/10 >>> records = [rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1184--1184 []\OT1/cmtt/m/n/10 >>> records = [rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1192--1192 []\OT1/cmtt/m/n/10 >>> records = (rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] [68] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1203--1203 []\OT1/cmtt/m/n/10 >>> records = (rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] Overfull \hbox (19.46596pt too wide) in paragraph at lines 1240--1242 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) [69] Overfull \hbox (21.32593pt too wide) in paragraph at lines 1284--1288 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator ) [70] (./Tutorial/chapter_align.tex Chapter 6. [71] [72] [73] [74] [75] [76] [77] [78] Overfull \hbox (5.54102pt too wide) in paragraph at lines 435--436 \OT1/cmr/m/n/10 ever you can't do that when your records come from a gen-er-a-t or/it-er-a-tor. There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 443--448 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() [79] [80] [81] Overfull \hbox (16.49278pt too wide) in paragraph at lines 619--622 []\OT1/cmr/m/n/10 Internally the [][]\OT1/cmtt/m/n/10 format() []\OT1/cmr/m/n/1 0 method is us-ing the [][]\OT1/cmtt/m/n/10 StringIO []\OT1/cmr/m/n/10 string b ased han-dle and call-ing [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write()[]\OT1/cmr/m/ n/10 . [82] [83] [84] [85] [86] [87] Overfull \hbox (8.40039pt too wide) in paragraph at lines 1057--1061 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO [88] [89] [90] Overfull \hbox (23.74068pt too wide) in paragraph at lines 1316--1316 []\OT1/cmtt/m/n/10 needle -outfile=needle.txt -asequence=alpha.faa -bsequence=b eta.faa -gapopen=10 -gapextend=0.5[] [91] Overfull \hbox (23.74068pt too wide) in paragraph at lines 1364--1364 []\OT1/cmtt/m/n/10 needle -outfile=needle.txt -asequence=alpha.faa -bsequence=b eta.faa -gapopen=10 -gapextend=0.5[] [92] [93] [94] [95] [96] Overfull \hbox (175.46193pt too wide) in paragraph at lines 1776--1813 [][] [97] [98] [99] [100] [101] Overfull \hbox (19.80069pt too wide) in paragraph at lines 2013--2014 \OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing [][]\OT1/cmtt/m/n/10 len(alignments) [102] [103]) [104] (./Tutorial/chapter_blast.tex Chapter 7. [105] [106] [107] LaTeX Warning: Reference `sec:parsing-blast-deprecated' on page 108 undefined o n input line 268. [108] [109] Overfull \hbox (55.2404pt too wide) in paragraph at lines 436--436 []\OT1/cmtt/m/n/10 sequence: >gb|AF283004.1|AF283004 Arabidopsis thaliana cold acclimation protein WCOR413-like protein[] [110] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment.) [111] [112 <./images/BlastRecord.png>] [113 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. [114] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult [115] [116] [117] [118] [119] Overfull \hbox (44.7405pt too wide) in paragraph at lines 462--462 []\OT1/cmtt/m/n/10 ... hit.id = hit.id.split("|")[3] # renames "gi|301171 322|ref|NR_035857.1|" to "NR_035857.1"[] [120] [121] [122] [123] Overfull \hbox (469.98679pt too wide) in paragraph at lines 731--731 []\OT1/cmtt/m/n/10 SeqRecord(seq=Seq('CCCTCTACAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGA AAGTGCTTCCTTT...GGG', DNAAlphabet()), id='42291', name='aligned query sequence' , description='mystery_seq', dbxrefs=[])[] Overfull \hbox (769.23418pt too wide) in paragraph at lines 731--731 []\OT1/cmtt/m/n/10 SeqRecord(seq=Seq('CCCTCTACAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGA AAGTGCTTCCTTT...GGG', DNAAlphabet()), id='gi|262205317|ref|NR_030195.1|', name= 'aligned hit sequence', description='Homo sapiens microRNA 520b (MIR520B), micr oRNA', dbxrefs=[])[] Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment [124] [125] Overfull \hbox (65.74031pt too wide) in paragraph at lines 870--870 []\OT1/cmtt/m/n/10 >>> blat_hsp2.hit_inter_ranges # start and end coordinates of intervening regions in the hit sequence[] [126] Overfull \hbox (769.23418pt too wide) in paragraph at lines 962--962 []\OT1/cmtt/m/n/10 SeqRecord(seq=Seq('CCCTCTACAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGA AAGTGCTTCCTTT...GGG', DNAAlphabet()), id='gi|262205317|ref|NR_030195.1|', name= 'aligned hit sequence', description='Homo sapiens microRNA 520b (MIR520B), micr oRNA', dbxrefs=[])[] [127] Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . [128] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 >>> idx = SearchIO.index("tab_2226_tblastn_001.txt", "blast- tab", key_function=key_function)[] Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse [129]) [130] (./Tutorial/chapter_entrez.tex Chapter 9. [131] [132] [133] [134] Overfull \hbox (70.99026pt too wide) in paragraph at lines 224--224 []\OT1/cmtt/m/n/10 >>> handle = Entrez.esearch(db="nucleotide", term="Cypripedi oideae[Orgn] AND matK[Gene]", idtype="acc")[] [135] [136] [137] [138] Overfull \hbox (13.24077pt too wide) in paragraph at lines 450--450 [] \OT1/cmtt/m/n/10 net_handle = Entrez.efetch(db="nucleotide", id="EU490707 ", rettype="gb", retmode="text")[] [139] [140] [141] [142] Overfull \hbox (312.48816pt too wide) in paragraph at lines 677--677 []\OT1/cmtt/m/n/10 Bio.Entrez.Parser.NotXMLError: Failed to parse the XML data (syntax error: line 1, column 0). Please make sure that the input data are in X ML format.[] [143] Overfull \hbox (249.48871pt too wide) in paragraph at lines 698--698 []\OT1/cmtt/m/n/10 [] Overfull \hbox (370.23766pt too wide) in paragraph at lines 705--705 []\OT1/cmtt/m/n/10 Bio.Entrez.Parser.CorruptedXMLError: Failed to parse the XML data (no element found: line 16, column 0). Please make sure that the input da ta are not corrupted.[] Overfull \hbox (249.48871pt too wide) in paragraph at lines 736--736 []\OT1/cmtt/m/n/10 [] [144] Overfull \hbox (585.48578pt too wide) in paragraph at lines 748--748 []\OT1/cmtt/m/n/10 Bio.Entrez.Parser.ValidationError: Failed to find tag 'Docsu mList' in the DTD. To skip all tags that are not represented in the DTD, please call Bio.Entrez.read or Bio.Entrez.parse with validate=False.[] [145] [146] [147] Overfull \hbox (133.98972pt too wide) in paragraph at lines 970--970 []\OT1/cmtt/m/n/10 EXPRESS bone| connective tissue| intestine| liver| live r tumor| normal| soft tissue/muscle tissue tumor| adult[] Overfull \hbox (102.48999pt too wide) in paragraph at lines 970--970 []\OT1/cmtt/m/n/10 SEQUENCE ACC=BG569293.1; NID=g13576946; CLONE=IMAGE:47225 96; END=5'; LID=6989; SEQTYPE=EST; TRACE=44157214[] [148] Overfull \hbox (160.23949pt too wide) in paragraph at lines 992--992 []\OT1/cmtt/m/n/10 ['bone', 'connective tissue', 'intestine', 'liver', 'liver t umor', 'normal', 'soft tissue/muscle tissue tumor', 'adult'][] [149] [150] Overfull \hbox (23.74068pt too wide) in paragraph at lines 1152--1152 []\OT1/cmtt/m/n/10 >>> handle = Entrez.esearch(db="nucleotide", term="Cypripedi oideae", retmax=814, idtype="acc")[] [151] [152] [153] [154] [155] [156] [157]) [158] (./Tutorial/chapter_uniprot.tex Chapter 10. Overfull \hbox (216.73924pt too wide) in paragraph at lines 30--30 []\OT1/cmtt/m/n/10 >>> handle = TextIOWrapper(urlopen("https://raw.githubuserc ontent.com/biopython/biopython/master/Tests/SwissProt/F2CXE6.txt"))[] Overfull \hbox (137.98993pt too wide) in paragraph at lines 39--39 []\OT1/cmtt/m/n/10 >>> handle = urlopen("https://raw.githubusercontent.com/bio python/biopython/master/Tests/SwissProt/F2CXE6.txt")[] [159] Overfull \hbox (270.48853pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 SubName: Full=Plasma membrane intrinsic protein {ECO:0000313 |EMBL:BAN04711.1}; SubName: Full=Predicted protein {ECO:0000313|EMBL:BAJ87517.1 };[] Overfull \hbox (359.73775pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 authors: Matsumoto T., Tanaka T., Sakai H., Amano N., Kanamo ri H., Kurita K., Kikuta A., Kamiya K., Yamamoto M., Ikawa H., Fujii N., Hori K ., Itoh T., Sato K.[] Overfull \hbox (86.74013pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 title: Comprehensive sequence analysis of 24,783 barley full -length cDNAs derived from 12 clone libraries.[] Overfull \hbox (553.98605pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta' , 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'Liliopsida', 'Poales', 'Po aceae', 'BEP clade', 'Pooideae', 'Triticeae', 'Hordeum'][] Overfull \hbox (7.99081pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 title: Functional characterization of a novel plasma membran e intrinsic protein2 in barley.[] Overfull \hbox (553.98605pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta' , 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'Liliopsida', 'Poales', 'Po aceae', 'BEP clade', 'Pooideae', 'Triticeae', 'Hordeum'][] Overfull \hbox (553.98605pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta' , 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'Liliopsida', 'Poales', 'Po aceae', 'BEP clade', 'Pooideae', 'Triticeae', 'Hordeum'][] [160] [161] [162] [163] [164] [165] Overfull \hbox (24.29903pt too wide) in paragraph at lines 366--367 []\OT1/cmr/m/n/10 If the ac-ces-sion num-ber you pro-vided to [][]\OT1/cmtt/m/n /10 ExPASy.get_sprot_raw []\OT1/cmr/m/n/10 does not ex-ist, then [][]\OT1/cmtt/ m/n/10 SwissProt.read(handle) Overfull \hbox (65.93893pt too wide) in paragraph at lines 409--410 []\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m en-ta-tion record and parse it into a [][]\OT1/cmtt/m/n/10 Bio.ExPASy.Prodoc.Re cord [166] Overfull \hbox (133.98972pt too wide) in paragraph at lines 493--493 []\OT1/cmtt/m/n/10 {'signature_ac': u'PS50948', 'level': u'0', 'stop': 98, 'seq uence_ac': u'USERSEQ1', 'start': 16, 'score': u'8.873'}[] [167]) [168] (./Tutorial/chapter_pdb.tex Chapter 11. [169] [170] Overfull \hbox (13.022pt too wide) in paragraph at lines 194--196 \OT1/cmr/m/n/10 The over-all lay-out of a \OT1/cmtt/m/n/10 Structure \OT1/cmr/m /n/10 ob-ject fol-lows the so-called SM-CRA (Struc-ture/-Mod-el/Chain/Residue/A tom) [171] Excluding 'htmlonly' comment. [172] [173 <./images/smcra.png (PNG copy)>] [174] [175] [176] [177] [178] [179] [180] [181] [182] LaTeX Warning: Command \r invalid in math mode on input line 901. [183] [184] [185] [186] [187]) [188] (./Tutorial/chapter_popgen.tex Chapter 12. [189]) [190] (./Tutorial/chapter_phylo.tex Chapter 13. [191] Excluding 'htmlonly' comment. [192] Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor [193 <./images/phylo-simple-draw.png>] Excluding 'htmlonly' comment. [194 <./im ages/phylo-color-draw.png>] [195] Overfull \hbox (406.98734pt too wide) in paragraph at lines 328--328 []\OT1/cmtt/m/n/10 Phylogeny(description='phyloXML allows to use either a "bran ch_length" attribute...', name='example from Prof. Joe Felsenstein's book "Infe rring Phyl...', rooted=True)[] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [196] [197 <./images/phylo-draw-example.png> <./i mages/phylo-dot.png>] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [198 <./images/phylo-rooted.png> <./images/phylo- color.png>] [199 <./images/phylo-apaf.png> <./images/phylo-apaf-zoom.png>] Overfull \hbox (19.85507pt too wide) in paragraph at lines 559--566 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [200] Overfull \hbox (13.48741pt too wide) in paragraph at lines 614--617 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [201] [202] Overfull \hbox (4.04672pt too wide) in paragraph at lines 825--828 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- [203] [204]) [205] (./Tutorial/chapter_motifs.tex Chapter 14. [206] [207] [208] [209] Overfull \hbox (128.73976pt too wide) in paragraph at lines 270--270 []\OT1/cmtt/m/n/10 [Seq('CACGTG', IUPACUnambiguousDNA()), Seq('CACGTG', IUPACUn ambiguousDNA()), Seq('CACGTG', IUPACUnambiguousDNA())][] [210] [211] [212] [213] [214] [215] Overfull \hbox (13.10551pt too wide) in paragraph at lines 582--586 \OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 motifs.parse []\OT1/cmr/m/n/10 com-man d reads the com-plete file di-rectly, so you can close the file af-ter call-ing [][]\OT1/cmtt/m/n/10 motifs.parse[]\OT1/cmr/m/n/10 . [216] [217] [218] LaTeX Warning: `h' float specifier changed to `ht'. [219] [220] [221] [222] [223] [224] [225] [226] [227] [228] [229] [230]) [231] (./Tutorial/chapter_cluster.tex Chapter 15. [232] [233] [234] [235] [236] Overfull \hbox (78.60634pt too wide) in paragraph at lines 230--231 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ [237] [238] [239] [240] [241] Overfull \hbox (16.73593pt too wide) in paragraph at lines 413--414 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. The items be-ing clus-tered are num-bered from 0 to $[]$, [242] [243] [244] [245] [246] Overfull \hbox (106.77225pt too wide) in paragraph at lines 648--650 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ [247] Overfull \hbox (175.98935pt too wide) in paragraph at lines 707--707 []\OT1/cmtt/m/n/10 >>> handle = TextIOWrapper(urlopen("https://raw.githubuserco ntent.com/biopython/biopython/master/Tests/Cluster/cyano.txt"))[] Overfull \hbox (97.24004pt too wide) in paragraph at lines 715--715 []\OT1/cmtt/m/n/10 >>> handle = urlopen("https://raw.githubusercontent.com/biop ython/biopython/master/Tests/Cluster/cyano.txt")[] [248] Overfull \hbox (25.39864pt too wide) in paragraph at lines 740--751 [] [249] [250] [251] [252] Overfull \hbox (106.77225pt too wide) in paragraph at lines 930--932 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ [253]) Overfull \hbox (26.21434pt too wide) in paragraph at lines 986--111 []\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result _K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT 1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 . [254] (./Tutorial/chapter_learning.tex Chapter 16. [255] [256] [257] [258] [259] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 278. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 278. [260] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 286. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 286. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 298. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 298. [261] [262]) [263] (./Tutorial/chapter_graphics.tex Chapter 17. [264] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [265] [266 <./images/plasmid_linear.png (PNG copy)> <./images/plasmid_circular.png (P NG copy)>] [267] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [268] [269 <./images/GD_sigil_labels.png (PNG copy)>] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [270] [271 <./images/GD_sigils.png>] [272 <./imag es/GD_sigil_arrow_shafts.png>] Excluding 'htmlonly' comment. [273 <./images/GD_ sigil_arrow_heads.png>] [274] Excluding 'htmlonly' comment. [275 <./images/plas mid_linear_nice.png (PNG copy)>] [276 <./images/plasmid_circular_nice.png>] Overfull \hbox (2.74086pt too wide) in paragraph at lines 605--605 []\OT1/cmtt/m/n/10 A_colors = [red]*5 + [grey]*7 + [orange]*2 + [grey]*2 + [ora nge] + [grey]*11 + [green]*4 \[] [277] Excluding 'htmlonly' comment. [278 <./images/three_track_simple.png>] [279] Overfull \hbox (28.99063pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 color = colors.linearlyInterpolatedColor(colors.whit e, colors.firebrick, 0, 100, score)[] Overfull \hbox (2.65141pt too wide) in paragraph at lines 784--790 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [280] [281 <./image s/three_track_cl.png>] [282 <./images/three_track_cl2a.png>] [283] [284 <./imag es/simple_chrom.pdf> <./images/tRNA_chrom.pdf>] [285] Excluding 'htmlonly' comment. [286] Excluding 'htmlonly' comment.) [287] (./Tutorial/chapter_kegg.tex Chapter 18. [288] [289]) [290] (./Tutorial/chapter_phenotype.tex Chapter 19. [291] Overfull \hbox (48.7407pt too wide) in paragraph at lines 102--102 []\OT1/cmtt/m/n/10 PlateRecord('WellRecord['A01'], WellRecord['A02'], WellReco rd['A03'], ..., WellRecord['A12']')[] Overfull \hbox (48.7407pt too wide) in paragraph at lines 102--102 []\OT1/cmtt/m/n/10 PlateRecord('WellRecord['A01'], WellRecord['B01'], WellReco rd['C01'], ..., WellRecord['H01']')[] Overfull \hbox (48.7407pt too wide) in paragraph at lines 102--102 []\OT1/cmtt/m/n/10 PlateRecord('WellRecord['A01'], WellRecord['A02'], WellReco rd['A03'], ..., WellRecord['C03']')[] [292] [293] [294]) [295] (./Tutorial/chapter_cookbook.tex Chapter 20. [296] [297] [298] [299] [300] [301] Overfull \hbox (5.83499pt too wide) in paragraph at lines 426--430 \OT1/cmr/m/n/10 mat (e.g. FASTA files). How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator Overfull \hbox (4.57849pt too wide) in paragraph at lines 444--446 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . [302] [303] [304] [305] Overfull \hbox (7.99081pt too wide) in paragraph at lines 765--765 []\OT1/cmtt/m/n/10 Seq('GTCCCAGTATTCGGATTTGTCTGCCAAAACAATGAAATTGACACAGTTTACAAC. ..CCG', SingleLetterAlphabet())[] [306] [307] [308] [309] Excluding 'htmlonly' comment. Overfull \hbox (4.00363pt too wide) in paragraph at lines 1057--1060 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) [310] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [311 <./image s/hist_plot.png>] [312 <./images/gc_plot.png>] Excluding 'htmlonly' comment. [313 <./images/dot_plot.png>] Excluding 'htmlonly' comment. [314] Excluding 'htmlonly' comment. [315 <./images/dot_plot_scatter.png>] [316 <./ima ges/SRR001666.png>] [317] Overfull \hbox (49.0755pt too wide) in paragraph at lines 1460--1461 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . [318] [319] [320] [321]) [322] (./Tutorial/chapter_testing.tex Chapter 21. [323] [324] [325] [326] [327] [328] [329] (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmr.fd)) [330] (./Tutorial/chapter_advanced.tex Chapter 22. [331] [332] Overfull \hbox (30.74179pt too wide) in paragraph at lines 198--199 [][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the log-odds val-ues. Each en-try is gen-er-ated by log(LOM[key])*factor [333] [334]) [335] (./Tutorial/chapter_contributing.tex Chapter 23. [336] [337]) [338] (./Tutorial/chapter_appendix.tex Chapter 24. [339]) [340] [341] [342] [343] (./Tutorial.aux (./Tutorial/chapter_introduction.aux) (./Tutorial/chapter_quick_start.aux) (./Tutorial/chapter_seq_objects.aux) (./Tutorial/chapter_seq_annot.aux) (./Tutorial/chapter_seqio.aux) (./Tutorial/chapter_align.aux) (./Tutorial/chapter_blast.aux) (./Tutorial/chapter_searchio.aux) (./Tutorial/chapter_entrez.aux) (./Tutorial/chapter_uniprot.aux) (./Tutorial/chapter_pdb.aux) (./Tutorial/chapter_popgen.aux) (./Tutorial/chapter_phylo.aux) (./Tutorial/chapter_motifs.aux) (./Tutorial/chapter_cluster.aux) (./Tutorial/chapter_learning.aux) (./Tutorial/chapter_graphics.aux) (./Tutorial/chapter_kegg.aux) (./Tutorial/chapter_phenotype.aux) (./Tutorial/chapter_cookbook.aux) (./Tutorial/chapter_testing.aux) (./Tutorial/chapter_advanced.aux) (./Tutorial/chapter_contributing.aux) (./Tutorial/chapter_appendix.aux)) LaTeX Warning: There were undefined references. ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb> Output written on Tutorial.pdf (344 pages, 2486417 bytes). Transcript written on Tutorial.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. 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[11] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1097--1098 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) [12] Overfull \hbox (20.6135pt too wide) in paragraph at lines 1118--1123 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1280--1288 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) Package rerunfilecheck Warning: File `biopdb_faq.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. 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If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 298--303 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 298--303 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- [4] [5] [6] [7 <./images/smcra.png (PNG copy)>] [8] [9] [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 960--964 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 968--973 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1097--1098 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) [12] Overfull \hbox (20.6135pt too wide) in paragraph at lines 1118--1123 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1280--1288 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 163990 bytes). Transcript written on biopdb_faq.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (./biopdb_faq.aux) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 257--262 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 298--303 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 298--303 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- [4] [5] [6] [7 <./images/smcra.png (PNG copy)>] [8] [9] [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 960--964 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 968--973 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1097--1098 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) [12] Overfull \hbox (20.6135pt too wide) in paragraph at lines 1118--1123 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1280--1288 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 163990 bytes). Transcript written on biopdb_faq.log. make -C install make[3]: Entering directory '/build/python-biopython-1.73+dfsg/Doc/install' pdflatex Installation.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./Installation.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 52. No file Installation.aux. (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) LaTeX Warning: Reference `sec:windows_install' on page 1 undefined on input lin e 108. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [3] [4] [5] [6] LaTeX Warning: Reference `sec:is_working' on page 7 undefined on input line 460 . [7] LaTeX Warning: Reference `sec:unix_install' on page 8 undefined on input line 5 37. Overfull \hbox (9.0224pt too wide) in paragraph at lines 540--541 []\OT1/cmr/m/n/10 For Python 2.6 we cur-rently use Mi-crosoft's free VC++ 2008 Ex-press Edi-tion from [][]$\OT1/cmtt/m/n/10 http : / / www . microsoft . LaTeX Warning: Reference `sec:is_working' on page 8 undefined on input line 558 . Overfull \hbox (27.57379pt too wide) in paragraph at lines 563--565 [][]\OT1/cmtt/m/n/10 PYTHONPATH []\OT1/cmr/m/n/10 with some-thing like [][]\OT1 /cmtt/m/n/10 export PYTHONPATH = $PYTHONPATH':/directory/where/you/put/Biopytho n' [8] (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) Overfull \hbox (9.6602pt too wide) in paragraph at lines 600--601 []\OT1/cmr/m/n/10 NCBI Stan-dalone BLAST, which can used with the [][]\OT1/cmtt /m/n/10 Bio.Blast []\OT1/cmr/m/n/10 mod-ule and parsed with the [][]\OT1/cmtt/m /n/10 Bio.SearchIO [9] [10] (./Installation.aux) Package rerunfilecheck Warning: File `Installation.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) Output written on Installation.pdf (10 pages, 143811 bytes). Transcript written on Installation.log. pdflatex Installation.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./Installation.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 52. (./Installation.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./Installation.out) (./Installation.out) (./Installation.toc) [1{/var/lib/texm f/fonts/map/pdftex/updmap/pdftex.map}] [2] [3] [4] [5] [6] [7] Overfull \hbox (9.0224pt too wide) in paragraph at lines 540--541 []\OT1/cmr/m/n/10 For Python 2.6 we cur-rently use Mi-crosoft's free VC++ 2008 Ex-press Edi-tion from [][]$\OT1/cmtt/m/n/10 http : / / www . microsoft . [8] Overfull \hbox (27.57379pt too wide) in paragraph at lines 563--565 [][]\OT1/cmtt/m/n/10 PYTHONPATH []\OT1/cmr/m/n/10 with some-thing like [][]\OT1 /cmtt/m/n/10 export PYTHONPATH = $PYTHONPATH':/directory/where/you/put/Biopytho n' (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) Overfull \hbox (9.6602pt too wide) in paragraph at lines 600--601 []\OT1/cmr/m/n/10 NCBI Stan-dalone BLAST, which can used with the [][]\OT1/cmtt /m/n/10 Bio.Blast []\OT1/cmr/m/n/10 mod-ule and parsed with the [][]\OT1/cmtt/m /n/10 Bio.SearchIO [9] [10] (./Installation.aux) LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) Output written on Installation.pdf (10 pages, 149556 bytes). Transcript written on Installation.log. pdflatex Installation.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./Installation.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 52. (./Installation.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./Installation.out) (./Installation.out) (./Installation.toc) [1{/var/lib/texm f/fonts/map/pdftex/updmap/pdftex.map}] [2] [3] [4] [5] [6] [7] Overfull \hbox (9.0224pt too wide) in paragraph at lines 540--541 []\OT1/cmr/m/n/10 For Python 2.6 we cur-rently use Mi-crosoft's free VC++ 2008 Ex-press Edi-tion from [][]$\OT1/cmtt/m/n/10 http : / / www . microsoft . [8] Overfull \hbox (27.57379pt too wide) in paragraph at lines 563--565 [][]\OT1/cmtt/m/n/10 PYTHONPATH []\OT1/cmr/m/n/10 with some-thing like [][]\OT1 /cmtt/m/n/10 export PYTHONPATH = $PYTHONPATH':/directory/where/you/put/Biopytho n' (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) Overfull \hbox (9.6602pt too wide) in paragraph at lines 600--601 []\OT1/cmr/m/n/10 NCBI Stan-dalone BLAST, which can used with the [][]\OT1/cmtt /m/n/10 Bio.Blast []\OT1/cmr/m/n/10 mod-ule and parsed with the [][]\OT1/cmtt/m /n/10 Bio.SearchIO [9] [10] (./Installation.aux) ) (see the transcript file for additional information) Output written on Installation.pdf (10 pages, 149702 bytes). Transcript written on Installation.log. hevea -fix Installation.tex Exclude comment 'comment' ./Installation.tex:67: Warning: Suppressing nested a element ./Installation.tex:67: Warning: Suppressing nested a element ./Installation.tex:108: Warning: Undefined label: 'sec:windows_install' ./Installation.tex:114: Warning: Suppressing nested a element ./Installation.tex:114: Warning: Suppressing nested a element ./Installation.tex:140: Warning: Suppressing nested a element ./Installation.tex:140: Warning: Suppressing nested a element ./Installation.tex:218: Warning: Suppressing nested a element ./Installation.tex:218: Warning: Suppressing nested a element ./Installation.tex:230: Warning: Suppressing nested a element ./Installation.tex:230: Warning: Suppressing nested a element ./Installation.tex:255: Warning: Suppressing nested a element ./Installation.tex:255: Warning: Suppressing nested a element ./Installation.tex:314: Warning: Suppressing nested a element ./Installation.tex:314: Warning: Suppressing nested a element ./Installation.tex:317: Warning: Suppressing nested a element ./Installation.tex:317: Warning: Suppressing nested a element ./Installation.tex:387: Warning: Suppressing nested a element ./Installation.tex:387: Warning: Suppressing nested a element ./Installation.tex:400: Warning: Suppressing nested a element ./Installation.tex:400: Warning: Suppressing nested a element ./Installation.tex:406: Warning: Suppressing nested a element ./Installation.tex:406: Warning: Suppressing nested a element ./Installation.tex:413: Warning: Suppressing nested a element ./Installation.tex:413: Warning: Suppressing nested a element ./Installation.tex:419: Warning: Suppressing nested a element ./Installation.tex:419: Warning: Suppressing nested a element ./Installation.tex:421: Warning: Suppressing nested a element ./Installation.tex:421: Warning: Suppressing nested a element ./Installation.tex:430: Warning: '_' occurring outside math mode ./Installation.tex:456: Warning: Suppressing nested a element ./Installation.tex:456: Warning: Suppressing nested a element ./Installation.tex:460: Warning: Undefined label: 'sec:is_working' ./Installation.tex:467: Warning: Suppressing nested a element ./Installation.tex:467: Warning: Suppressing nested a element ./Installation.tex:497: Warning: Suppressing nested a element ./Installation.tex:497: Warning: Suppressing nested a element ./Installation.tex:516: Warning: Suppressing nested a element ./Installation.tex:516: Warning: Suppressing nested a element ./Installation.tex:535: Warning: '_' occurring outside math mode ./Installation.tex:537: Warning: Undefined label: 'sec:unix_install' ./Installation.tex:540: Warning: Suppressing nested a element ./Installation.tex:540: Warning: Suppressing nested a element ./Installation.tex:548: Warning: Suppressing nested a element ./Installation.tex:548: Warning: Suppressing nested a element ./Installation.tex:556: Warning: Suppressing nested a element ./Installation.tex:556: Warning: Suppressing nested a element ./Installation.tex:558: Warning: Undefined label: 'sec:is_working' ./Installation.tex:561: Warning: '_' occurring outside math mode ./Installation.tex:609: Warning: Suppressing nested a element ./Installation.tex:609: Warning: Suppressing nested a element HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Installation.tex:67: Warning: Suppressing nested a element ./Installation.tex:67: Warning: Suppressing nested a element ./Installation.tex:114: Warning: Suppressing nested a element ./Installation.tex:114: Warning: Suppressing nested a element ./Installation.tex:140: Warning: Suppressing nested a element ./Installation.tex:140: Warning: Suppressing nested a element ./Installation.tex:218: Warning: Suppressing nested a element ./Installation.tex:218: Warning: Suppressing nested a element ./Installation.tex:230: Warning: Suppressing nested a element ./Installation.tex:230: Warning: Suppressing nested a element ./Installation.tex:255: Warning: Suppressing nested a element ./Installation.tex:255: Warning: Suppressing nested a element ./Installation.tex:314: Warning: Suppressing nested a element ./Installation.tex:314: Warning: Suppressing nested a element ./Installation.tex:317: Warning: Suppressing nested a element ./Installation.tex:317: Warning: Suppressing nested a element ./Installation.tex:387: Warning: Suppressing nested a element ./Installation.tex:387: Warning: Suppressing nested a element ./Installation.tex:400: Warning: Suppressing nested a element ./Installation.tex:400: Warning: Suppressing nested a element ./Installation.tex:406: Warning: Suppressing nested a element ./Installation.tex:406: Warning: Suppressing nested a element ./Installation.tex:413: Warning: Suppressing nested a element ./Installation.tex:413: Warning: Suppressing nested a element ./Installation.tex:419: Warning: Suppressing nested a element ./Installation.tex:419: Warning: Suppressing nested a element ./Installation.tex:421: Warning: Suppressing nested a element ./Installation.tex:421: Warning: Suppressing nested a element ./Installation.tex:430: Warning: '_' occurring outside math mode ./Installation.tex:456: Warning: Suppressing nested a element ./Installation.tex:456: Warning: Suppressing nested a element ./Installation.tex:467: Warning: Suppressing nested a element ./Installation.tex:467: Warning: Suppressing nested a element ./Installation.tex:497: Warning: Suppressing nested a element ./Installation.tex:497: Warning: Suppressing nested a element ./Installation.tex:516: Warning: Suppressing nested a element ./Installation.tex:516: Warning: Suppressing nested a element ./Installation.tex:535: Warning: '_' occurring outside math mode ./Installation.tex:540: Warning: Suppressing nested a element ./Installation.tex:540: Warning: Suppressing nested a element ./Installation.tex:548: Warning: Suppressing nested a element ./Installation.tex:548: Warning: Suppressing nested a element ./Installation.tex:556: Warning: Suppressing nested a element ./Installation.tex:556: Warning: Suppressing nested a element ./Installation.tex:561: Warning: '_' occurring outside math mode ./Installation.tex:609: Warning: Suppressing nested a element ./Installation.tex:609: Warning: Suppressing nested a element Fixpoint reached in 2 step(s) hevea -fix -text Installation.tex Exclude comment 'comment' ./Installation.tex:55: Warning: tt_mode is an empty style ./Installation.tex:61: Warning: No date given ./Installation.tex:430: Warning: '_' occurring outside math mode ./Installation.tex:535: Warning: '_' occurring outside math mode ./Installation.tex:561: Warning: '_' occurring outside math mode HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Installation.tex:55: Warning: tt_mode is an empty style ./Installation.tex:61: Warning: No date given ./Installation.tex:430: Warning: '_' occurring outside math mode ./Installation.tex:535: Warning: '_' occurring outside math mode ./Installation.tex:561: Warning: '_' occurring outside math mode Fixpoint reached in 2 step(s) make[3]: Leaving directory '/build/python-biopython-1.73+dfsg/Doc/install' make[2]: Leaving directory '/build/python-biopython-1.73+dfsg/Doc' make[1]: Leaving directory '/build/python-biopython-1.73+dfsg' rm -f debian/python-biopython-doc.debhelper.log debian/python-biopython-sql.debhelper.log debian/python-biopython.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-biopython-1.73+dfsg' mkdir -p Tests_avoid for avoid in PAML_tools EmbossPhylipNew MSAProbs_tool NACCESS_tool PopGen_DFDist PopGen_FDist PopGen_GenePop PopGen_GenePop_EasyController PopGen_SimCoal XXmotif_tool BWA_tool raxml_tool BioSQL_MySQLdb BioSQL_psycopg2 phyml_tool \ ; do \ mv Tests/test_${avoid}.py Tests_avoid ; \ done mv: cannot stat 'Tests/test_PopGen_DFDist.py': No such file or directory mv: cannot stat 'Tests/test_PopGen_FDist.py': No such file or directory mv: cannot stat 'Tests/test_PopGen_SimCoal.py': No such file or directory # For the doc package we need a clean testsuite without all the remaining files. So keep a clean copy here mkdir -p debian/tmp_tests cp -a Tests debian/tmp_tests # remove duplicated file rm -f debian/tmp_tests/Tests/Quality/example.fastq.gz # We also keep the tests we need to avoid for later inspection cp -a Tests_avoid debian/tmp_tests # in the Debian package dialign it is not needed to set DIALIGN2_DIR but the test is verifying this dir # to run the EMBOSS test test_Emboss also requires to have the environment variable EMBOSS_ROOT set LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \ --test-args='set -e; \ mkdir -p {build_dir}/home; \ mkdir -p {build_dir}/Doc/examples; \ cp -a Doc/Tutorial.tex {build_dir}/Doc; \ cp -a Doc/Tutorial {build_dir}/Doc; \ cp -a Doc/examples {build_dir}/Doc; \ cp -a Tests {build_dir}; \ cd {build_dir}/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline' pybuild --test -i python{version} -p 2.7 --test --system=custom "--test-args=set -e; \\\ mkdir -p {build_dir}/home; \\\ mkdir -p {build_dir}/Doc/examples; \\\ cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\ cp -a Doc/Tutorial {build_dir}/Doc; \\\ cp -a Doc/examples {build_dir}/Doc; \\\ cp -a Tests {build_dir}; \\\ cd {build_dir}/Tests; \\\ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" I: pybuild base:217: set -e; \ mkdir -p /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/home; \ mkdir -p /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples; \ cp -a Doc/Tutorial.tex /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc; \ cp -a Doc/Tutorial /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc; \ cp -a Doc/examples /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc; \ cp -a Tests /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build; \ cd /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/home python2.7 run_tests.py --offline test_Ace ... ok test_Affy ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_MauveIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_AlignInfo ... ok test_Application ... ok test_BioSQL_MySQLdb_online ... skipping. internet not available test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) test_BioSQL_mysql_connector_online ... skipping. internet not available test_BioSQL_psycopg2_online ... skipping. internet not available test_BioSQL_sqlite3 ... ok test_BioSQL_sqlite3_online ... skipping. internet not available test_CAPS ... ok test_CelFile ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... ok test_Cluster ... ok test_CodonTable ... ok test_CodonUsage ... ok test_ColorSpiral ... ok test_Compass ... ok test_Consensus ... ok test_Crystal ... ok test_DSSP_tool ... ok test_Dialign_tool ... ok test_EMBL_unittest ... ok test_Emboss ... ok test_EmbossPrimer ... ok test_Entrez ... ok test_Entrez_online ... skipping. internet not available test_Entrez_parser ... ok test_Enzyme ... ok test_ExPASy ... skipping. internet not available test_FSSP ... ok test_Fasttree_tool ... ok test_File ... ok test_GenBank ... ok test_GenBank_unittest ... ok test_GenomeDiagram ... colinear! colinear! x_order_2: colinear! x_order_2: colinear! x_order_2: colinear! x_order_2: colinear! x_order_2: colinear! ok test_GraphicsBitmaps ... ok test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KDTree ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_graphics_online ... skipping. internet not available test_KGML_nographics ... ok test_KeyWList ... ok test_Location ... ok test_LogisticRegression ... ok test_MafIO_index ... ok test_Mafft_tool ... ok test_MarkovModel ... ok test_Medline ... ok test_Muscle_tool ... ok test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ blastn and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ blastp and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ blastx and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ deltablast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ makeblastdb and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -blastdb_version) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ psiblast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ rpsblast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -subject_besthit) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ tblastn and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ tblastx and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) ok test_NCBI_qblast ... skipping. internet not available test_NaiveBayes ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDB ... ok test_PDBList ... skipping. internet not available test_PDB_FragmentMapper ... ok test_PDB_KDTree ... ok test_PDB_MMCIF2Dict ... ok test_PDB_MMCIFParser ... ok test_PDB_Polypetide ... ok test_PDB_ResidueDepth ... skipping. Install MSMS if you want to use it in Biopython. test_PDB_StructureAlignment ... /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/StructureBuilder.py:91: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 13298. PDBConstructionWarning) /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/StructureBuilder.py:91: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 13344. PDBConstructionWarning) ok test_PDB_Superimposer ... ok test_PDB_vectors ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_matplotlib ... ok test_Phylo_networkx ... skipping. Install networkx if you wish to use it with Bio.Phylo test_PopGen_GenePop_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_QCPSuperimposer ... ok test_RCSBFormats ... ok test_Restriction ... skipping. Under Python 2 this test needs the unittest2 library test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_text ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_interproscan_xml ... ok test_SearchIO_legacy ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqFeature ... ok test_SeqIO ... ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Insdc ... ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... ok test_SeqIO_SeqXML ... ok test_SeqIO_convert ... ok test_SeqIO_features ... ok test_SeqIO_index ... ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SubsMat ... ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_Tutorial ... ok test_UniGene ... ok test_Uniprot ... ok test_Wise ... ok test_align ... ok test_bgzf ... ok test_cellosaurus ... ok test_codonalign ... /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Seq.py:2589: BiopythonWarning: This table contains 6 codon(s) which code(s) for both STOP and an amino acid (e.g. 'TAA' -> 'stop' or STOP). Such codons will be translated as amino acid. BiopythonWarning) ok test_geo ... ok test_kNN ... ok test_lowess ... ok test_mmtf ... skipping. Install mmtf to use Bio.PDB.mmtf (e.g. pip install mmtf-python) test_mmtf_online ... skipping. Install mmtf to use Bio.PDB.mmtf (e.g. pip install mmtf-python) test_motifs ... ok test_motifs_online ... skipping. internet not available test_pairwise2 ... ok test_pairwise_aligner ... ok test_phenotype ... ok test_phenotype_fit ... ok test_prodoc ... ok test_prosite1 ... ok test_prosite2 ... ok test_psw ... ok test_samtools_tool ... skipping. Install samtools and correctly set the file path to the program if you want to use it from Biopython test_seq ... skipping. Under Python 2 this test needs the unittest2 library test_translate ... ok test_trie ... ok Bio.Align docstring test ... ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._Dialign docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Alphabet docstring test ... ok Bio.Alphabet.Reduced docstring test ... ok Bio.Application docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... ok Bio.codonalign.codonalignment docstring test ... ok Bio.codonalign.codonalphabet docstring test ... ok Bio.codonalign.codonseq docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.GenBank docstring test ... ok Bio.Graphics.GenomeDiagram._Colors docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.KEGG.Gene docstring test ... ok Bio.KEGG.KGML.KGML_parser docstring test ... ok Bio.Nexus.Nexus docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.Phylo.Consensus docstring test ... ok Bio.Phylo.BaseTree docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.IgIO docstring test ... ok Bio.SeqIO.InsdcIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.PirIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqIO.TabIO docstring test ... ok Bio.SeqFeature docstring test ... /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Seq.py:2609: BiopythonWarning: Partial codon, len(sequence) not a multiple of three. Explicitly trim the sequence or add trailing N before translation. This may become an error in future. BiopythonWarning) ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... ok Bio.SeqUtils.CheckSum docstring test ... ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.SeqUtils.ProtParam docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.SwissProt docstring test ... ok Bio.UniProt.GOA docstring test ... ok Bio.Wise docstring test ... ok Bio.Wise.psw docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.MaxEntropy docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.Selection docstring test ... ok Bio.SeqIO.PdbIO docstring test ... ok Bio.Statistics.lowess docstring test ... ok Bio.SVDSuperimposer docstring test ... ok ---------------------------------------------------------------------- Ran 259 tests in 659.794 seconds Skipping any tests requiring internet access Python version: 2.7.16 (default, Oct 10 2019, 22:02:15) [GCC 8.3.0] Operating system: posix linux2 pybuild --test -i python{version} -p 3.7 --test --system=custom "--test-args=set -e; \\\ mkdir -p {build_dir}/home; \\\ mkdir -p {build_dir}/Doc/examples; \\\ cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\ cp -a Doc/Tutorial {build_dir}/Doc; \\\ cp -a Doc/examples {build_dir}/Doc; \\\ cp -a Tests {build_dir}; \\\ cd {build_dir}/Tests; \\\ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" I: pybuild base:217: set -e; \ mkdir -p /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/home; \ mkdir -p /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples; \ cp -a Doc/Tutorial.tex /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc; \ cp -a Doc/Tutorial /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc; \ cp -a Doc/examples /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc; \ cp -a Tests /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build; \ cd /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/home python3.7 run_tests.py --offline x_order_2: colinear! x_order_2: colinear! x_order_2: colinear! x_order_2: colinear! test_Ace ... ok test_Affy ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_MauveIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_AlignInfo ... ok test_Application ... ok test_BioSQL_MySQLdb_online ... skipping. internet not available test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) test_BioSQL_mysql_connector_online ... skipping. internet not available test_BioSQL_psycopg2_online ... skipping. internet not available test_BioSQL_sqlite3 ... ok test_BioSQL_sqlite3_online ... skipping. internet not available test_CAPS ... ok test_CelFile ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... ok test_Cluster ... ok test_CodonTable ... ok test_CodonUsage ... ok test_ColorSpiral ... ok test_Compass ... ok test_Consensus ... ok test_Crystal ... ok test_DSSP_tool ... ok test_Dialign_tool ... ok test_EMBL_unittest ... ok test_Emboss ... ok test_EmbossPrimer ... ok test_Entrez ... ok test_Entrez_online ... skipping. internet not available test_Entrez_parser ... ok test_Enzyme ... ok test_ExPASy ... skipping. internet not available test_FSSP ... ok test_Fasttree_tool ... ok test_File ... ok test_GenBank ... ok test_GenBank_unittest ... ok test_GenomeDiagram ... ok test_GraphicsBitmaps ... ok test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KDTree ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_graphics_online ... skipping. internet not available test_KGML_nographics ... ok test_KeyWList ... ok test_Location ... ok test_LogisticRegression ... ok test_MafIO_index ... ok test_Mafft_tool ... ok test_MarkovModel ... ok test_Medline ... ok test_Muscle_tool ... ok test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ blastn and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ blastp and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ blastx and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ deltablast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ makeblastdb and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -blastdb_version) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ psiblast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ rpsblast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -subject_besthit) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ tblastn and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ tblastx and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) ok test_NCBI_qblast ... skipping. internet not available test_NaiveBayes ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDB ... ok test_PDBList ... skipping. internet not available test_PDB_FragmentMapper ... ok test_PDB_KDTree ... ok test_PDB_MMCIF2Dict ... ok test_PDB_MMCIFParser ... ok test_PDB_Polypetide ... ok test_PDB_ResidueDepth ... skipping. Install MSMS if you want to use it in Biopython. test_PDB_StructureAlignment ... /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/StructureBuilder.py:91: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 13298. PDBConstructionWarning) /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/StructureBuilder.py:91: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 13344. PDBConstructionWarning) ok test_PDB_Superimposer ... ok test_PDB_vectors ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_matplotlib ... ok test_Phylo_networkx ... skipping. Install networkx if you wish to use it with Bio.Phylo test_PopGen_GenePop_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_QCPSuperimposer ... ok test_RCSBFormats ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_text ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_interproscan_xml ... ok test_SearchIO_legacy ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqFeature ... ok test_SeqIO ... ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Insdc ... /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank/Scanner.py:287: BiopythonParserWarning: Non-standard feature line wrapping (didn't break on comma)? BiopythonParserWarning) ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... ok test_SeqIO_SeqXML ... ok test_SeqIO_convert ... ok test_SeqIO_features ... ok test_SeqIO_index ... ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SubsMat ... ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_Tutorial ... ok test_UniGene ... ok test_Uniprot ... ok test_Wise ... ok test_align ... ok test_bgzf ... ok test_cellosaurus ... ok test_codonalign ... /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Seq.py:2589: BiopythonWarning: This table contains 6 codon(s) which code(s) for both STOP and an amino acid (e.g. 'TAA' -> 'stop' or STOP). Such codons will be translated as amino acid. BiopythonWarning) ok test_geo ... ok test_kNN ... ok test_lowess ... ok test_mmtf ... skipping. Error: Install mmtf to use Bio.PDB.mmtf (e.g. pip install mmtf-python) test_mmtf_online ... skipping. Error: Install mmtf to use Bio.PDB.mmtf (e.g. pip install mmtf-python) test_motifs ... ok test_motifs_online ... skipping. internet not available test_pairwise2 ... ok test_pairwise_aligner ... ok test_phenotype ... ok test_phenotype_fit ... ok test_prodoc ... ok test_prosite1 ... ok test_prosite2 ... ok test_psw ... ok test_samtools_tool ... skipping. Install samtools and correctly set the file path to the program if you want to use it from Biopython test_seq ... ok test_translate ... ok test_trie ... ok Bio.Align docstring test ... ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._Dialign docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Alphabet docstring test ... ok Bio.Alphabet.Reduced docstring test ... ok Bio.Application docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Seq.py:2589: BiopythonWarning: This table contains 6 codon(s) which code(s) for both STOP and an amino acid (e.g. 'TAA' -> 'stop' or STOP). Such codons will be translated as amino acid. BiopythonWarning) ok Bio.codonalign.codonalignment docstring test ... ok Bio.codonalign.codonalphabet docstring test ... ok Bio.codonalign.codonseq docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.GenBank docstring test ... ok Bio.Graphics.GenomeDiagram._Colors docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.KEGG.Gene docstring test ... ok Bio.KEGG.KGML.KGML_parser docstring test ... ok Bio.Nexus.Nexus docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.Phylo.Consensus docstring test ... ok Bio.Phylo.BaseTree docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.Seq docstring test ... /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Seq.py:2589: BiopythonWarning: This table contains 2 codon(s) which code(s) for both STOP and an amino acid (e.g. 'TGA' -> 'W' or STOP). Such codons will be translated as amino acid. BiopythonWarning) ok Bio.SeqIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.IgIO docstring test ... ok Bio.SeqIO.InsdcIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.PirIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqIO.TabIO docstring test ... ok Bio.SeqFeature docstring test ... /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Seq.py:2609: BiopythonWarning: Partial codon, len(sequence) not a multiple of three. Explicitly trim the sequence or add trailing N before translation. This may become an error in future. BiopythonWarning) ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... ok Bio.SeqUtils.CheckSum docstring test ... ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.SeqUtils.ProtParam docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.SwissProt docstring test ... ok Bio.UniProt.GOA docstring test ... ok Bio.Wise docstring test ... ok Bio.Wise.psw docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.MaxEntropy docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.Selection docstring test ... ok Bio.SeqIO.PdbIO docstring test ... ok Bio.Statistics.lowess docstring test ... ok Bio.SVDSuperimposer docstring test ... ok ---------------------------------------------------------------------- Ran 260 tests in 691.098 seconds Skipping any tests requiring internet access Python version: 3.7.3 (default, Jul 25 2020, 13:03:44) [GCC 8.3.0] Operating system: posix linux mv Tests_avoid/* Tests rmdir Tests_avoid make[1]: Leaving directory '/build/python-biopython-1.73+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python2,python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python-biopython.substvars debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python-biopython-sql.substvars debian/python3-biopython-sql.substvars rm -fr -- debian/.debhelper/generated/python-biopython/ debian/python-biopython/ debian/tmp/ debian/.debhelper/generated/python3-biopython/ debian/python3-biopython/ debian/.debhelper/generated/python-biopython-doc/ debian/python-biopython-doc/ debian/.debhelper/generated/python-biopython-sql/ debian/python-biopython-sql/ debian/.debhelper/generated/python3-biopython-sql/ debian/python3-biopython-sql/ rm -f debian/python-biopython-doc.debhelper.log debian/python-biopython-sql.debhelper.log debian/python-biopython.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/python-biopython-1.73+dfsg' dh_auto_install install -d /build/python-biopython-1.73\+dfsg/debian/tmp pybuild --install -i python{version} -p 2.7 --dest-dir /build/python-biopython-1.73\+dfsg/debian/tmp I: pybuild base:217: /usr/bin/python setup.py install --root /build/python-biopython-1.73+dfsg/debian/tmp running install running build running build_py running egg_info writing requirements to biopython.egg-info/requires.txt writing biopython.egg-info/PKG-INFO writing top-level names to biopython.egg-info/top_level.txt writing dependency_links to biopython.egg-info/dependency_links.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution writing manifest file 'biopython.egg-info/SOURCES.txt' running build_ext running install_lib creating /build/python-biopython-1.73+dfsg/debian/tmp/usr creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_trie.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_translate.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_seq.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_samtools_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_psw.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_prosite2.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_prosite1.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_prodoc.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_phenotype_fit.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_phenotype.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_pairwise_aligner.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_pairwise2.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_motifs_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_motifs.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_mmtf_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_mmtf.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_lowess.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_kNN.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_geo.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_codonalign.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_cellosaurus.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_align.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/requires_wise.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Wise.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Uniprot.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_UniGene.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Tutorial.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_TreeConstruction.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_TogoWS.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_TCoffee_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SwissProt.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SubsMat.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SffIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Seq_objs.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqUtils.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqRecord.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_write.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_bgzf.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_features.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_convert.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_SeqXML.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_QualityIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_PdbIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_Insdc.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_FastaIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_AbiIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqFeature.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_write.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_model.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_legacy.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_interproscan_xml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_text_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_text.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_tab_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_tab.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_domtab_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_domtab.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer2_text_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer2_text.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_fasta_m10_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_fasta_m10.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_exonerate_vulgar_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_exonerate_text_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_exonerate.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blat_psl_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blat_psl.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blast_xml_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blast_xml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blast_text.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/search_tests_common.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blast_tab_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blast_tab.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SVDSuperimposer.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Scop.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Residues.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Raf.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Hie.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Dom.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Des.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Cla.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Astral.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Restriction.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_RCSBFormats.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_QCPSuperimposer.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_ProtParam.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Probcons_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/tmpdirprankmsaApKQY9 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/tmpdirprankmsaKEnNv7 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output.best.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output.best.fas -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Prank_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PopGen_GenePop_nodepend.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phylo_networkx.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phylo_matplotlib.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phylo_NeXML.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phylo_CDAO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PhyloXML.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phylo.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phd.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Pathway.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_vectors.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_Superimposer.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_StructureAlignment.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_ResidueDepth.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_Polypetide.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_MMCIFParser.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_MMCIF2Dict.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_KDTree.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_FragmentMapper.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDBList.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PAML_yn00.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PAML_codeml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PAML_baseml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Nexus.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NaiveBayes.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_qblast.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBIXML.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBITextParser.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Muscle_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Medline.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_MarkovModel.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Mafft_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_MafIO_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_LogisticRegression.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Location.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KeyWList.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KGML_nographics.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KGML_graphics_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KGML_graphics.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KEGG_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KEGG.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KDTree.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_HMMGeneral.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_HMMCasino.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GraphicsGeneral.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GraphicsDistribution.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GraphicsChromosome.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GraphicsBitmaps.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GenomeDiagram.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GenBank_unittest.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GenBank.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_File.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Fasttree_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_FSSP.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_ExPASy.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Enzyme.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Entrez_parser.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Entrez_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Entrez.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_EmbossPrimer.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Emboss.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_EMBL_unittest.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Dialign_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_DSSP_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Crystal.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Consensus.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Compass.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_ColorSpiral.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_CodonUsage.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_CodonTable.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Cluster.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Clustalw_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_ClustalOmega_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Chi2.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_CelFile.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_CAPS.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_sqlite3_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_sqlite3.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_psycopg2_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_mysql_connector_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_mysql_connector.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/common_BioSQL_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/seq_tests_common.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/common_BioSQL.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_MySQLdb_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Application.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignInfo.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_convert.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_PhylipIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_MauveIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_FastaIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_EmbossIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_ClustalIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Affy.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Ace.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/requires_internet.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GenomeDiagram.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/tmp_MAF/ucsc_mm9_chr10_rel_rel.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/tmp_MAF/ucsc_mm9_chr10_rel_abs.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/tmp_MAF/ucsc_mm9_chr10_bad.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/tmp_MAF/ucsc_mm9_chr10_abs_rel.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/tmp_MAF/ucsc_mm9_chr10_abs_abs.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/tmp_MAF/ucsc_mm9_chr10.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_trie.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_translate.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_seq.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_samtools_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_psw.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_prosite2.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_prosite1.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_prodoc.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_phenotype_fit.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_phenotype.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_pairwise_aligner.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_pairwise2.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_motifs_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_motifs.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_mmtf_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_mmtf.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_lowess.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_kNN.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_geo.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_codonalign.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_cellosaurus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_bgzf.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_align.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Wise.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Uniprot.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_UniGene.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Tutorial.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_TreeConstruction.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_TogoWS.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_TCoffee_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SwissProt.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SubsMat.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SffIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Seq_objs.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqUtils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqRecord.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_write.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_features.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_convert.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_SeqXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_QualityIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_PdbIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_Insdc.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_FastaIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_AbiIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqFeature.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_write.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_model.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_legacy.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_interproscan_xml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_text_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_tab_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_tab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_domtab_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_domtab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer2_text_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer2_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_fasta_m10_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_fasta_m10.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_exonerate_vulgar_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_exonerate_text_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_exonerate.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blat_psl_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blat_psl.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blast_xml_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blast_xml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blast_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blast_tab_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blast_tab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SVDSuperimposer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Scop.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Residues.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Raf.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Hie.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Dom.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Des.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Cla.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Astral.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Restriction.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_RCSBFormats.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_QCPSuperimposer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_ProtParam.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Probcons_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Prank_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PopGen_GenePop_nodepend.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phylo_networkx.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phylo_matplotlib.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phylo_NeXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phylo_CDAO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PhyloXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phylo.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phd.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Pathway.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_vectors.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_Superimposer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_StructureAlignment.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_ResidueDepth.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_Polypetide.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_MMCIFParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_MMCIF2Dict.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_KDTree.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_FragmentMapper.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDBList.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PAML_yn00.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PAML_codeml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PAML_baseml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Nexus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NaiveBayes.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_qblast.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBIXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBITextParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Muscle_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Medline.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_MarkovModel.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Mafft_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_MafIO_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_LogisticRegression.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Location.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KeyWList.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KGML_nographics.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KGML_graphics_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KGML_graphics.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KEGG_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KEGG.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KDTree.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_HMMGeneral.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_HMMCasino.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GraphicsGeneral.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GraphicsDistribution.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GraphicsChromosome.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GraphicsBitmaps.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GenBank_unittest.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GenBank.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_File.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Fasttree_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_FSSP.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_ExPASy.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Enzyme.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Entrez_parser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Entrez_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Entrez.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_EmbossPrimer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Emboss.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_EMBL_unittest.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Dialign_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_DSSP_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Crystal.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Consensus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Compass.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_ColorSpiral.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_CodonUsage.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_CodonTable.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Cluster.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Clustalw_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_ClustalOmega_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Chi2.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_CelFile.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_CAPS.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_sqlite3_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_sqlite3.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_psycopg2_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_mysql_connector_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_mysql_connector.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_MySQLdb_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Application.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignInfo.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_convert.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_PhylipIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_MauveIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_FastaIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_EmbossIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_ClustalIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Affy.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Ace.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/seq_tests_common.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/search_tests_common.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/run_tests.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/requires_wise.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/requires_internet.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/phenotype/SmallPlates.csv -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/phenotype/SmallPlate_2.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/phenotype/SmallPlate.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/phenotype/Plates.csv -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/phenotype/Plate_2.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/phenotype/Plate.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/phenotype/BadPlate.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/phenotype creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_translate -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_property_manager -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_geo -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_align -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_SubsMat -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_SeqIO -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_SearchIO_legacy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_PDB -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_NCBI_qblast -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_Location -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_KEGG -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_HMMCasino -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_GenBank -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_GFF2 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_GFF -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_File -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_Fasttree_tool -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_FSSP -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_CodonUsage -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_Clustalw_tool -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_Clustalw -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_ClustalOmega_tool -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_AlignIO_MauveIO -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_AlignIO -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/transfac.dat -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/minimal_test.meme -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/meme_v_4_11_4.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/meme.rna.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/meme.protein.tcm.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/meme.protein.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/meme.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/meme.dna.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/mast.protein.tcm.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/mast.protein.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/mast.dna.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/alignace.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/SRF.pfm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/REB1.pfm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/Arnt.sites -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/common_BioSQL_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/common_BioSQL.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/pro5.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/pro4.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/pro3.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/pro2.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/pro1.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/nucl5.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/nucl4.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/nucl3.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/nucl2.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/nucl1.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/egfr_pro.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/egfr_nucl.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/egfr_id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/drosophilla.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/adh.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/biosql.ini.sample -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/biosql.ini.appveyor -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Wise/human_114_g02_exons.fna_01 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Wise/human_114_g01_exons.fna_01 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Wise creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/UniProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/UniProt/goa_yeast.gaf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/UniProt creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/UniGene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/UniGene/Mdm_partial.data -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/UniGene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/UniGene/Hs.2.data -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/UniGene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/UniGene/Eca.1.2425.data -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/UniGene creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/upgma.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/trees.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/test.log -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/strict_refs.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/pars3.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/nj.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/neighbor_trees.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/msa.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/majority_ref.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/consensus_refs.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/adam_refs.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/uni003 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/uni002 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/uni001 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp016 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp015 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp014 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp013 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp012 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp011 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp010 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp009 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp008 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp007 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp006 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp005 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp004 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp003 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp002 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp001 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/multi_ex.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/multi_ex.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/multi_ex.rdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/multi_ex.list -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/multi_ex.gff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/multi_ex.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/keywlist2.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/keywlist.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/README -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/R5HY77.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/Q13639.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/Q13639.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/P97881.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/P84001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/H2CNN8.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/H2CNN8.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/F2CXE6.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/F2CXE6.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SubsMat/redAltAADistrib.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SubsMat/redAADistrib.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SubsMat/protein_freq.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SubsMat/protein_count.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SubsMat/acc_rep_mat.pik -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SubsMat/aaDistrib.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SubsMat creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Stockholm copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Stockholm/simple.sth -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Stockholm copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Stockholm/funny.sth -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Stockholm creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SeqXML/rna_example.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SeqXML/protein_example.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SeqXML/global_species_example.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SeqXML/dna_example.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SeqXML/corrupt_example2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SeqXML/corrupt_example1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SeqXML creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/sam2.sam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/sam1.sam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/readme.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/ex1_refresh.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/ex1_header.sam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/ex1_header.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/ex1.sam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/ex1.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/ex1.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/bam2_sorted.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/bam2.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/bam1_sorted.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/bam1.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Saf copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Saf/saf1.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Saf creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/testDom.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-50-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-5-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-4-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-3-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-25-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-20-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2,3-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-15-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-10-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1,3-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-0,3-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+1-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0,7-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-95-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-90-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-70-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-50-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-40-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-35-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-30-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-25-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-20-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-100-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-10-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/raftest.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/dir.hie.scop.txt_test -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/dir.des.scop.txt_test -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/dir.cla.scop.txt_test -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/triple_sff_rel_paths.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/triple_sff.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/paired.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/invalid_paired_E3MFGYR02.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/invalid_greek_E3MFGYR02.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/greek.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_random_10_reads.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_random_10_reads.qual -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_random_10_reads.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_no_manifest.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_index_in_middle.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_index_at_start.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_alt_index_at_start.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_alt_index_at_end.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Registry copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Registry/seqs.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Registry copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Registry/bt001 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Registry copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Registry/EDD_RAT.dat -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Registry creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/taqi.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/taqi.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/pvuii.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/pvuii.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/foki.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/foki.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/crei.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/crei.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/cac81.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/cac81.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/bamii.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/bamii.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/zero_length.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/wrapping_original_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/wrapping_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/wrapping_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/wrapping_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/tricky.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/solexa_full_range_original_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/solexa_full_range_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/solexa_full_range_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/solexa_full_range_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/solexa_faked.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/solexa_example.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/sanger_full_range_original_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/sanger_full_range_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/sanger_full_range_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/sanger_full_range_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/sanger_faked.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/sanger_93.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/misc_rna_original_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/misc_rna_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/misc_rna_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/misc_rna_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/misc_dna_original_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/misc_dna_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/misc_dna_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/misc_dna_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/longreads_original_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/longreads_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/longreads_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/longreads_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/illumina_full_range_original_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/illumina_full_range_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/illumina_full_range_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/illumina_full_range_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/illumina_faked.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/example_dos.fastq.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/example_dos.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/example.qual -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/example.fastq.gz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/example.fastq.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/example.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/example.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_trunc_in_title.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_trunc_in_seq.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_trunc_in_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_trunc_in_plus.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_trunc_at_seq.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_trunc_at_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_trunc_at_plus.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_tabs.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_spaces.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_short_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_qual_vtab.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_qual_unit_sep.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_qual_tab.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_qual_space.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_qual_null.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_qual_escape.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_qual_del.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_no_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_long_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_double_seq.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_double_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_diff_ids.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/ps00546.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/ps00488.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/ps00432.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/ps00165.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/ps00159.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/ps00107.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/prosite.excerpt.doc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/pdoc00933.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/pdoc00787.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/pdoc00640.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/pdoc00472.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/pdoc00424.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/pdoc00340.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/pdoc00149.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/pdoc00144.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/pdoc00113.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/pdoc00100.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PopGen/haplo3.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PopGen/haplo2.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PopGen/haplo.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PopGen/c3space.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PopGen/c3line.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PopGen/c2space.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PopGen/c2line.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PopGen/big.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PopGen/README -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PopGen creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PhyloXML/phyloxml_examples.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PhyloXML/o_tol_332_d_dollo.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PhyloXML/made_up.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PhyloXML/example.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PhyloXML/distribution.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PhyloXML/bcl_2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PhyloXML/apaf.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PhyloXML creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phylip/sequential2.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phylip/sequential.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phylip/reference_dna2.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phylip/reference_dna.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phylip/random.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phylip/interlaced2.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phylip/interlaced.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phylip/horses.tree -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phylip/horses.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phylip/hennigian.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phd copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phd/phd_solexa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phd copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phd/phd_454 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phd copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phd/phd2 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phd copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phd/phd1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phd creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/occupancy.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/lib_10_z_5.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/ions.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/dssp_xtra_Sander.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/alignment_file.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/a_structure.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/a_structure.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/Wilke_RASA.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/Sander_RASA.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/Miller_RASA.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/4ZHL.mmtf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/4ZHL.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/4Q9R_min.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/4CUP.mmtf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/4CUP.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/3JQH.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/2XHE.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/2XHE.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/2OFG.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/2BEG_noheader.dssp -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/2BEG.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/2BEG.dssp -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/2BEG.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1SSU_mod.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1SSU_mod.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1MOM_min.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1LCD.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1LCD.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1AS5.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1A8O.xyzr -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1A8O.rsa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1A8O.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1A8O.mmtf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1A8O.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1A8O.asa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/gen_results.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Trees/species.tree -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Trees/lysin.trees.4.6 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Trees/lysin.trees -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Trees/bad.tree -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Trees creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/yn00/yn00_long-4_8.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/yn00/yn00-4_8.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/yn00/yn00-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/yn00/yn00-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/yn00/yn00-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/yn00/yn00-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/yn00/yn00-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/yn00/yn00-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/yn00/yn00-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/tree_regexp_versatility.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/pairwise creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/freeratio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/clademodelC creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/SE/SE-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/SE/SE-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/SE/SE-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/SE/SE-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/SE/SE-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/SE/SE-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/SE/SE-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/versions/baseml44c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/versions/baseml44.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/versions/baseml43.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/versions/baseml41.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/versions creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK4-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK4-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK4-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK3-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK3-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK3-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK2-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK2-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK2-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK1-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK1-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK1-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model8-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model8-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model8-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model8-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model8-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model8-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model8-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model7-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model7-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model7-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model7-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model7-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model7-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model7-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model6-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model6-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model6-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model6-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model6-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model6-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model6-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model5-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model5-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model5-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model5-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model5-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model5-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model5-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model4-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model4-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model4-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model4-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model4-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model4-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model4-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model3-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model3-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model3-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model3-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model3-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model3-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model3-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model2-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model2-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model2-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model2-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model2-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model2-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model2-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model1-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model1-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model1-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model1-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model1-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model1-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model1-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model0-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model0-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model0-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model0-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model0-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model0-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model0-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/baseml_alpha1rho1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/baseml_SE.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/SE/SE-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/SE/SE-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/SE/SE-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/SE/SE-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/SE/SE-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/SE/SE-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/SE/SE-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/bad_results.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/yn00/yn00_long.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/yn00/yn00.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/yn00.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/species.tree -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/pairwise.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/ngene2_mgene34.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/ngene2_mgene1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/ngene2_mgene02.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/m2a_rel.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/freeratio.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/codeml.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/clademodelC.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/branchsiteA.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/all_NSsites.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/aa_pairwise.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/aa_model0.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/SE.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/NSsite3.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/nparK4.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/nparK3.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/nparK2.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/nparK1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/nhomo4.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/nhomo3.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/nhomo1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/model8.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/model7.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/model6.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/model5.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/model4.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/model3.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/model2.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/model1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/model0.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/baseml.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/alpha1rho1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/SE.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/bad3.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/bad2.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/bad1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Alignments/lysinYangSwanson2002.nuc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Alignments/longnames.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Alignments/alignment.phylip -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Alignments/aa_alignment.phylip -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Alignments creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Nexus/vSysLab_Oreiscelio_discrete+continuous.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Nexus/vSysLab_Heptascelio_no-states_10+chars.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Nexus/vSysLab_Ganaspidium_multistate.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Nexus/test_Nexus_input.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Nexus/test.new -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Nexus/int_node_labels.nwk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Nexus/codonposset.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Nexus/bats.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Nexus/ByteOrderMarkFile.nwk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Nexus creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeuralNetwork copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeuralNetwork/repeat.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeuralNetwork copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeuralNetwork/enolase.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeuralNetwork creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/trees.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/trees-uris.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/treebase-record.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/tolweb.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/timetree.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/taxa.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/sets.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/phenoscape.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/nexml.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/meta_types.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/meta_taxa.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/edgelabels.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/characters.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NBRF/clustalw.pir -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NBRF/DMB_prot.pir -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NBRF/DMA_nuc.pir -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NBRF/Cw_prot.pir -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NBRF/B_nuc.pir -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NBRF creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/transfac.dat -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/meme.protein.tcm.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/meme.protein.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/meme.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/meme.dna.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/mast.protein.tcm.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/mast.protein.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/mast.dna.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/alignace.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/SRF.pfm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/REB1.pfm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/Arnt.sites -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MetaTool/meta9.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MetaTool/meta2.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MetaTool/meta.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MetaTool/Meta8.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MetaTool/Meta7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MetaTool/Meta6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MetaTool/Meta4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MetaTool/Meta3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MetaTool creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Medline copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Medline/pubmed_result3.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Medline copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Medline/pubmed_result2.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Medline copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Medline/pubmed_result1.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Medline creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Mauve copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Mauve/simple.xmfa.bbcols -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Mauve copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Mauve/simple.xmfa.backbone -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Mauve copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Mauve/simple.xmfa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Mauve copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Mauve/simple.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Mauve creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/wrong_version.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/unfinished.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/ucsc_test.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/ucsc_mm9_chr10_big.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/ucsc_mm9_chr10_big.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/ucsc_mm9_chr10_bad.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/ucsc_mm9_chr10_bad.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/ucsc_mm9_chr10.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/ucsc_mm9_chr10.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/length_coords_mismatch.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/invalid.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/humor.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/corrupt.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/cnksr3.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/bundle_without_target.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/bug2453.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/map03070.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/map01100.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/map00950.rea -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/ko03070.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/ko01100.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/ko00253.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/ko00010.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/gene.sample -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/enzyme.sample -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/enzyme.new -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/enzyme.irregular -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/enzyme.4letter -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/compound.sample -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/compound.irregular -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/InterProScan copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/InterProScan/test_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/InterProScan creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/IntelliGenetics/vpu_nucaligned.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/IntelliGenetics/VIF_mase-pro.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/IntelliGenetics/TAT_mase_nuc.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/IntelliGenetics creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_31b2_phmmer_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_31b2_hmmsearch_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_31b2_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_31b2_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_31b1_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_31b1_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmsearch_005.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmsearch_004.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmsearch_003.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmsearch_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmscan_010.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmscan_009.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmscan_008.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmscan_007.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmscan_006.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmscan_005.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmscan_004.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmscan_003.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmscan_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_24_hmmpfam_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_23_hmmpfam_004.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_23_hmmpfam_003.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_23_hmmpfam_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_23_hmmpfam_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_22_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_22_hmmpfam_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_21_hmmpfam_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_20_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/tab_31b1_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/tab_31b1_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/tab_30_hmmscan_004.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/tab_30_hmmscan_003.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/tab_30_hmmscan_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/tab_30_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/domtab_31b1_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/domtab_31b1_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/domtab_30_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/domtab_30_hmmscan_004.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/domtab_30_hmmscan_003.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/domtab_30_hmmscan_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/domtab_30_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/map03070_transparency.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/map01100_transparency.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/map03070_colors.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/map01100_widths.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/map03070_original.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/map01100_original.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/scatter_test_7.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/scatter_test_1.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/simple_bar.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/multi_bar.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/tRNA_chrom.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/tRNA_chrom_sf.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/organism.svg -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/organism.eps -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/organism.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/random_organism.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/scatter_test.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_OCTO_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_OCTO.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_OCTO.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_JAGGY_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_JAGGY.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_JAGGY.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_BIGARROW_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_BIGARROW.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_BIGARROW.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_ARROW_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_ARROW.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_ARROW.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_OCTO_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_OCTO.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_OCTO.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_JAGGY_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_JAGGY.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_JAGGY.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_BIGARROW_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_BIGARROW.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_BIGARROW.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_ARROW_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_ARROW.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_ARROW.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_labels_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_labels.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_labels.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_bigarrow_shafts_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_bigarrow_shafts.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_bigarrow_shafts.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_arrow_shafts_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_arrow_shafts.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_arrow_shafts.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_arrows_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_arrows.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_arrows.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigils_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigils.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigils.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/labels_default_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/labels_default.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/labels_default.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/line_graph_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/line_graph.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_region_circular.svg -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_region_circular.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_region_linear.svg -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_region_linear.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_by_obj_frag_linear.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_by_obj_linear.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_by_obj_frag_circular.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_by_obj_circular.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_by_meth_circular.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_by_meth_linear.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/square_test.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/spiral_test.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/README -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/soft_ex_series.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/soft_ex_platform.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/soft_ex_family.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/soft_ex_dual.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/soft_ex_affy_chp.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/soft_ex_affy.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/GSM804.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/GSM700.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/GSM691.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/GSM645.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/GSE16.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/wrong_sequence_indent.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/qualifier_escaping_write.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/qualifier_escaping_read.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/protein_refseq2.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/protein_refseq.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/pri1.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/pBAD30.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/origin_line.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/one_of.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/noref.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/no_origin_no_end.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/no_end_marker.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/negative_location.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/iro.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/invalid_product.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/invalid_misc_feature.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/invalid_locus_line_spacing.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/gbvrl1_start.seq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/extra_keywords.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/empty_version.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/empty_feature_qualifier.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/empty_accession.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/dbsource_wrap.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/cor6_6.gb.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/cor6_6.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/blank_seq.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/bad_origin_wrap_linear.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/bad_origin_wrap_CDS.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/bad_origin_wrap.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/bad_loc_wrap.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/arab1.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/NT_019265.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/NP_416719.gbwithparts -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/NC_005816.tsv -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/NC_005816.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/NC_005816.fna -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/NC_005816.ffn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/NC_005816.faa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/NC_000932.gb.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/NC_000932.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/NC_000932.faa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/KF527485_output.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/KF527485.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/HM138502_output.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/HM138502.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/EU851978_output.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/EU851978.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/DS830848.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/1MRR_A.gp -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GFF/multi.fna -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GFF/NC_001802x.fna -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GFF/NC_001802lc.fna -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GFF/NC_001802.fna -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GFF/NC_001422.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GFF creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/wisteria.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/sweetpea.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/rosemary.pro -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/rose.pro -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/phlox.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output016.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output015.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output014.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output013.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output012.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output011.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output010.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output009.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output008.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output007.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output006.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output005.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output004.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output003.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output002.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output001.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/lupine.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/loveliesbleeding.pro -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/lavender.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/fa01 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/f003 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/f002 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/f001 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/elderberry.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/dups.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/centaurea.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/aster_no_wrap.pro -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/aster.pro -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/README -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/FSSP/1cnv.fssp -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/FSSP creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/ExtendedPhylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/ExtendedPhylip/primates.phyx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/ExtendedPhylip creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_q_none.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_q_multiple_vulgar.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_q_multiple.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_o_vulgar_fshifts2.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_o_vulgar_fshifts.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_o_vulgar_cigar.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_o_vulgar.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_ungapped_trans.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_ungapped.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_protein2genome.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_protein2dna_fshifts.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_protein2dna.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_ner.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_genome2genome.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_est2genome.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_dna2protein.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_coding2genome.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_coding2coding_fshifts.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_coding2coding.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_cdna2genome.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_affine_local.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Enzymes copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Enzymes/valine.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Enzymes copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Enzymes/proline.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Enzymes copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Enzymes/lipoprotein.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Enzymes copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Enzymes/lactate.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Enzymes creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/taxonomy.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/pubmed6.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/pubmed5.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/pubmed4.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/pubmed3.html -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/pubmed2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/pubmed1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/protein.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/nucleotide2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/nucleotide1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/ncbi_mim.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/journals.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esummary8.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esummary7.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esummary6.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esummary5.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esummary4.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esummary3.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esummary2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esummary1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/espell.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esearch8.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esearch7.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esearch6.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esearch5.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esearch4.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esearch3.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esearch2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esearch1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/epost3.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/epost2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/epost1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/elink8.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/elink7.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/elink6.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/elink5.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/elink4.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/elink3.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/elink2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/elink1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/einfo4.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/einfo3.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/einfo2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/einfo1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/egquery2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/egquery1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/efetch_schemas.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/water2.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/water.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/short.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/no_oligo.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/needle_asis.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/needle.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/matcher_simple.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/matcher_pair.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/internal_oligo.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/emboss_pair_aln_full_blank_line.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/cds_reverse.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/cds_forward.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/bac_find.psearch -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/bac_find.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/alignret.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/NirK_full.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/NirK.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/xx_after_co.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/patents.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/location_wrap.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/kipo_prt_sample.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/hla_3260_sample.imgt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/epo_prt_selection.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/embl_with_0_line.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/U87107.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/TRBG361.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/SC10H5.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/RepBase23.02.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/Human_contigs.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/DS830848.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/DD231055_edited2.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/DD231055_edited.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/AE017046.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/AAA03323.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/A04195.imgt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/101ma_no_coords.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Compass copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Compass/comtest2 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Compass copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Compass/comtest1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Compass creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/CodonUsage copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/CodonUsage/HighlyExpressedGenes.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/CodonUsage creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Cluster/cyano.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Cluster/README -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Cluster creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Clustalw/temp horses.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Clustalw/protein.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Clustalw/promals3d.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Clustalw/opuntia.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Clustalw/odd_consensus.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Clustalw/hedgehog.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Clustalw/cw02.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Clustalw creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Cellosaurus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Cellosaurus/cell_lines_3.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Cellosaurus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Cellosaurus/cell_lines_2.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Cellosaurus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Cellosaurus/cell_lines_1.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Cellosaurus creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/CDAO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/CDAO/test.cdao -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/CDAO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/pslx_35_002.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/pslx_34_005.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/pslx_34_004.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/pslx_34_003.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/pslx_34_002.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/pslx_34_001.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/psl_35_002.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/psl_35_001.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/psl_34_005.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/psl_34_004.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/psl_34_003.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/psl_34_002.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/psl_34_001.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/mirna.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/html_msgid_29_blastx_001.html -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_tblastx_004.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_tblastx_003.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_tblastx_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_tblastx_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_tblastn_005.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_tblastn_004.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_tblastn_003.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_tblastn_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_tblastn_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastx_004.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastx_003.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastx_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastx_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastp_005.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastp_004.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastp_003.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastp_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastp_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastn_006.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastn_005.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastn_004.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastn_003.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastn_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastn_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2222_blastx_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2222_blastp_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2218_blastp_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2218_blastp_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2218L_rpsblast_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2218L_blastp_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2212L_tblastx_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2212L_tblastn_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2212L_blastx_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2212L_blastp_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2212L_blastn_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/wnts.xml.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/wnts.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2230_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_tblastx_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_tblastx_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_tblastx_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_tblastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_tblastn_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_tblastn_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_tblastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastx_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastx_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastx_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastp_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastp_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastp_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastn_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastn_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2222_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2222L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2221L_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2220L_blastx_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2220L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2216L_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2215L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2208L_psiblast_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2202L_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2202L_blastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2202L_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2201L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2102L_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2014L_psiblast_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2014L_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2012L_psiblast_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_tblastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_tblastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_phiblast_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_phiblast_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_phiblast_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastx_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastp_007.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastp_006.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastp_005.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastp_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastp_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastp_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastn_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastn_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_tblastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_tblastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_phiblast_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_phiblast_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_phiblast_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastx_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastp_007.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastp_006.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastp_005.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastp_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastp_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastp_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastn_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastn_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2228_tblastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2228_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_013.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_012.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_011.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_010.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_009.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_008.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_007.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_006.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_005.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/mirna.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/mirna.tab -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/BioSQL/cor6_6.db -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/BioSQL/biosqldb-sqlite.sql -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/BioSQL/biosqldb-pg.sql -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/BioSQL/biosqldb-mysql.sql -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/BioSQL creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/BWA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/BWA/human_g1k_v37_truncated.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/BWA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/BWA/HNSCC1_2_truncated.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/BWA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/BWA/HNSCC1_1_truncated.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/BWA creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Affy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Affy/affy_v4_example.CEL -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Affy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Affy/affy_v3_example.CEL -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Affy creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Ace copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Ace/seq.cap.ace -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Ace copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Ace/contig1.ace -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Ace copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Ace/consed_sample.ace -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Ace creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Abi/test_data -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Abi/test.fsa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Abi/no_smpl1.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Abi/fake.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Abi/empty.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Abi/A6_1-DB3.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Abi/3730.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Abi/3100.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Abi/310.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/.flake8 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/.coveragerc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_appendix.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_contributing.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_advanced.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_testing.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_cookbook.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_phenotype.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_kegg.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_graphics.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_learning.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_cluster.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_motifs.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_phylo.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_popgen.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_pdb.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_uniprot.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_entrez.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_searchio.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_blast.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_align.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_seqio.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_seq_annot.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_seq_objects.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_quick_start.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_introduction.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_uniprot.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_testing.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_seqio.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_seq_objects.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_seq_annot.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_searchio.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_quick_start.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_popgen.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_phylo.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_phenotype.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_pdb.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_motifs.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_learning.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_kegg.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_introduction.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_graphics.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_entrez.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_cookbook.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_contributing.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_cluster.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_blast.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_appendix.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_align.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_advanced.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/www_blast.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/swissprot.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/simple.dnd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/protein.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/opuntia.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/opuntia.dnd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/opuntia.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/nmr copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/nmr/simplepredict.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/nmr copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/nmr/noed.xpk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/nmr copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/my_blat.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/my_blast.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/make_subsmat.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/m_cold.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/ls_orchid.gbk.gz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/ls_orchid.gbk.bz2 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/ls_orchid.gbk.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/ls_orchid.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/ls_orchid.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/getgene.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/fasta_iterator.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/fasta_dictionary.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/ec_5.4.2.2.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/clustal_run.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/beta.faa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/alpha.faa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/Proux_et_al_2002_Figure_6.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/Plates.csv -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/PF05371_seed.sth -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/ACT_example.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/.flake8 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.t_coffee creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.t_coffee/plugins creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.t_coffee/plugins/linux creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.t_coffee/methods creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.t_coffee/mcoffee creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.t_coffee/cache creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.cache creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.cache/matplotlib creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.cache/matplotlib/tex.cache copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/home/.cache/matplotlib/fontList.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.cache/matplotlib creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.config creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.config/matplotlib creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.config/biopython creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.config/biopython/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.config/biopython/Bio/Entrez creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.config/biopython/Bio/Entrez/XSDs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.config/biopython/Bio/Entrez/DTDs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL/DBUtils.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL/Loader.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL/BioSeq.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL/BioSeqDatabase.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL/BioSeq.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL/BioSeqDatabase.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL/DBUtils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL/Loader.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/MaxEntropy.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/triefind.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/kNN.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/pairwise2.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NaiveBayes.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/MarkovModel.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/LogisticRegression.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/bgzf.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/_utils.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqFeature.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Seq.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqRecord.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/File.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/trie.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/cpairwise2.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/triemodule.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/trie.h -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/trie.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/cpairwise2module.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/phenotype/pm_fitting.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/phenotype/phen_micro.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/phenotype/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/phenotype/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/phenotype/phen_micro.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/phenotype/pm_fitting.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/phenotype creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree/KDTree.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree/_CKDTree.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree/Neighbor.h -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree/KDTreemodule.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree/KDTree.h -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree/KDTree.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree/KDTree.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster/_cluster.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster/clustermodule.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster/cluster.h -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster/cluster.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Cluster creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Affy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Affy/CelFile.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Affy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Affy/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Affy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Affy/CelFile.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Affy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Affy/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Affy creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/_py3k copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/_py3k/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/_py3k copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/_py3k/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/_py3k creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Wise/psw.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Wise/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Wise/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Wise/dnal.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Wise/psw.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Wise creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniProt/GOA.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniProt/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniProt/GOA.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniProt/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniProt creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniGene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniGene/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniGene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniGene/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniGene creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Consensus.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/TreeConstruction.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/_utils.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/CDAO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/CDAOIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/_cdao_owl.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/NeXML.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/NeXMLIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PhyloXML.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PhyloXMLIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/NexusIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Newick.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/NewickIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/BaseTree.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/_io.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/_parse_yn00.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/yn00.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/_parse_codeml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/codeml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/_parse_baseml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/_paml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/baseml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/chi2.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/_paml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/_parse_baseml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/_parse_codeml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/_parse_yn00.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/baseml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/chi2.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/codeml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/yn00.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications/_Fasttree.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications/_Raxml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications/_Phyml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications/_Fasttree.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications/_Phyml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications/_Raxml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/BaseTree.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/CDAO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/CDAOIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Consensus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/NeXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/NeXMLIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Newick.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/NewickIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/NexusIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PhyloXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PhyloXMLIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/TreeConstruction.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/_cdao_owl.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/_io.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/_utils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/TogoWS copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/TogoWS/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/TogoWS creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SwissProt/KeyWList.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SwissProt/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SwissProt/KeyWList.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SwissProt/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SwissProt creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SVDSuperimposer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SVDSuperimposer/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SVDSuperimposer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SVDSuperimposer/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SVDSuperimposer creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SubsMat/MatrixInfo.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SubsMat/FreqTable.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SubsMat/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SubsMat/FreqTable.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SubsMat/MatrixInfo.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SubsMat/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SubsMat creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Statistics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Statistics/lowess.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Statistics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Statistics/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Statistics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Statistics/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Statistics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Statistics/lowess.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Statistics creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Phd.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Ace.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications/_samtools.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications/_bwa.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications/_Novoalign.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications/_Novoalign.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications/_bwa.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications/_samtools.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Ace.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Phd.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/MeltingTemp.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/lcc.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/IsoelectricPoint.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/ProtParamData.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/ProtParam.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/CodonUsageIndices.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/CodonUsage.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/CheckSum.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/CheckSum.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/CodonUsage.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/CodonUsageIndices.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/IsoelectricPoint.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/MeltingTemp.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/ProtParam.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/ProtParamData.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/lcc.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/_convert.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/UniprotIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/TabIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/SwissIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/SffIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/SeqXmlIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/PirIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/QualityIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/PhdIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/PdbIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/InsdcIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/IgIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/Interfaces.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/FastaIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/AceIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/AbiIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/AbiIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/AceIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/IgIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/InsdcIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/Interfaces.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/PdbIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/PhdIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/PirIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/QualityIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/SeqXmlIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/SffIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/SwissIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/TabIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/UniprotIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/_convert.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/FastaIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlatIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_utils.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/InterproscanIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/InterproscanIO/interproscan_xml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/InterproscanIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/InterproscanIO/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/InterproscanIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/InterproscanIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/InterproscanIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/InterproscanIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO/exonerate_cigar.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO/exonerate_vulgar.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO/_base.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO/exonerate_text.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO/_base.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/hmmer3_text.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/hmmer3_tab.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/_base.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/hmmer2_text.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/_base.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO/blast_text.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO/blast_xml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO/blast_tab.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO/blast_tab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO/blast_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO/blast_xml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model/hsp.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model/hit.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model/_base.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model/query.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model/_base.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model/hit.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model/hsp.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model/query.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_legacy/ParserSupport.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_legacy/NCBIStandalone.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_legacy/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_legacy/NCBIStandalone.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_legacy/ParserSupport.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_legacy/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlatIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_utils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Raf.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Dom.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Hie.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Residues.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Cla.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Des.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Cla.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Des.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Dom.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Hie.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Raf.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Residues.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction/RanaConfig.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction/PrintFormat.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction/Restriction_Dictionary.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction/Restriction.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction/PrintFormat.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction/RanaConfig.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction/Restriction.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction/Restriction_Dictionary.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop/FileParser.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop/Controller.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop/EasyController.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop/FileParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop/LargeFileParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop/Utils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/Rep/Graph.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/Rep/MultiGraph.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/Rep/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/Rep/Graph.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/Rep/MultiGraph.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/Rep/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/NMR copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NMR/xpktools.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/NMR copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NMR/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/NMR copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NMR/NOEtools.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/NMR copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NMR/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/NMR copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NMR/xpktools.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/NMR creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/Nodes.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/Trees.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/StandardData.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/Nexus.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/cnexus.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/cnexus.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/Nexus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/Nodes.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/StandardData.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/Trees.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/minimal.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/mast.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/alignace.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/thresholds.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/transfac.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/meme.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/matrix.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/_pwm.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/_pwm.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/jaspar copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/jaspar/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/jaspar copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/jaspar/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/jaspar copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/jaspar/db.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/jaspar creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/applications/_xxmotif.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/applications/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/applications/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/applications/_xxmotif.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/alignace.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/mast.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/matrix.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/meme.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/minimal.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/thresholds.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/transfac.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Medline copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Medline/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Medline copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Medline/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Medline creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Vector.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/NACCESS.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/NeighborSearch.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Dice.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/FragmentMapper.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/HSExposure.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/ResidueDepth.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/AbstractPropertyMap.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/DSSP.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/StructureAlignment.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Superimposer.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Selection.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/mmcifio.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/PDBIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Polypeptide.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/PDBList.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/MMCIF2Dict.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/MMCIFParser.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/parse_pdb_header.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/vectors.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Atom.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Residue.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Chain.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Model.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Entity.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Structure.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/StructureBuilder.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/PDBExceptions.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/PDBParser.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/kdtrees.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/kdtrees.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/QCPSuperimposer/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/QCPSuperimposer/qcprotmodule.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/QCPSuperimposer/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/AbstractPropertyMap.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Atom.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Chain.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/DSSP.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Dice.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Entity.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/FragmentMapper.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/HSExposure.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/MMCIF2Dict.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/MMCIFParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Model.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/NACCESS.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/NeighborSearch.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/PDBExceptions.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/PDBIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/PDBList.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/PDBParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/PSEA.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Polypeptide.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Residue.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/ResidueDepth.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Selection.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Structure.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/StructureAlignment.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/StructureBuilder.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Superimposer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Vector.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/mmcifio.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/parse_pdb_header.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/vectors.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/mmtf/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/mmtf/DefaultParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/mmtf/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/mmtf creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/REST.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/KGML/KGML_pathway.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/KGML/KGML_parser.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/KGML/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/KGML/KGML_parser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/KGML/KGML_pathway.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/KGML/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/KGML creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Map copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Map/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Map copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Map/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Map creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Gene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Gene/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Gene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Gene/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Gene creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Enzyme copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Enzyme/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Enzyme copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Enzyme/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Enzyme creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Compound copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Compound/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Compound copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Compound/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Compound copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/REST.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM/Utilities.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM/DynamicProgramming.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM/Trainer.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM/MarkovModel.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM/DynamicProgramming.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM/MarkovModel.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM/Trainer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM/Utilities.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/KGML_vis.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/Distribution.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/DisplayRepresentation.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/BasicChromosome.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/Comparative.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/ColorSpiral.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_CrossLink.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_Track.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_CircularDrawer.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_Graph.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_GraphSet.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_Colors.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_Feature.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_FeatureSet.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_LinearDrawer.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_Diagram.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_Colors.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_Feature.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_Graph.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_Track.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/BasicChromosome.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/ColorSpiral.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/Comparative.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/DisplayRepresentation.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/Distribution.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/KGML_vis.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Geo/Record.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Geo/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Geo/Record.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Geo/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Geo creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank/Record.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank/Scanner.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank/utils.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank/Record.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank/Scanner.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank/utils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/FSSP/FSSPTools.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/FSSP/fssp_rec.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/FSSP/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/FSSP/FSSPTools.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/FSSP/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/FSSP/fssp_rec.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/FSSP creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/Prosite.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/Prodoc.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/cellosaurus.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/Enzyme.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/Enzyme.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/Prodoc.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/Prosite.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/ScanProsite.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/cellosaurus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/Parser.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/XSDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/XSDs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/xmlspecchars.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/taxon.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/section.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/references.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pmc-1.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/phrase.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/para.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/notat.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/modules.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/mmlextra.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/mmlalias.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/mathmlsetup.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/mathml3.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/mathml2.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/math.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/list.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/link.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/journalmeta.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isotech.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isopub.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isonum.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isomscr.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isomopf.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isomfrk.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isolat2.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isolat1.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isogrk4.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isogrk3.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isogrk2.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isogrk1.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isodia.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isocyr2.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isocyr1.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isobox.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isoamsr.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isoamso.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isoamsn.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isoamsc.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isoamsb.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isoamsa.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/htmltable.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/format.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/esummary-v1.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/esearch.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/elink_020122.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/einfo.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/egquery.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/eSpell.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/ePost_020511.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/eLink_101123.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/eLink_090910.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/display.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/default-mixes.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/default-classes.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/common.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/chars.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/backmatter.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/articlemeta.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/archivecustom-models.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/archivearticle.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/SP_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/PRF_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/PIR_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/PDB_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/OMSSA.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NSE.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NSE.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_all.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Project.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/MMDB_Features.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/MMDB.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/MMDB.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/HomoloGene.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/GenBank_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/EMBL_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/Parser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss/Primer3.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss/PrimerSearch.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss/Applications.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss/Applications.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss/Primer3.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss/PrimerSearch.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data/SCOPData.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data/CodonTable.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data/IUPACData.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data/CodonTable.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data/IUPACData.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data/SCOPData.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Crystal copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Crystal/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Crystal copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Crystal/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Crystal creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Compass copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Compass/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Compass copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Compass/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Compass creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign/chisq.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign/codonalignment.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign/codonalphabet.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign/codonseq.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign/chisq.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign/codonalignment.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign/codonalphabet.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign/codonseq.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/CAPS copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/CAPS/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/CAPS copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/CAPS/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/CAPS creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/NCBIWWW.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/Applications.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/NCBIXML.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/Record.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/Applications.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/NCBIWWW.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/NCBIXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/ParseBlastTable.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/Record.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Application copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Application/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Application copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Application/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Application creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Alphabet copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Alphabet/Reduced.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Alphabet copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Alphabet/IUPAC.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Alphabet copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Alphabet/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Alphabet copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Alphabet/IUPAC.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Alphabet copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Alphabet/Reduced.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Alphabet copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Alphabet/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Alphabet creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/MauveIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/MafIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/FastaIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/EmbossIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/PhylipIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/NexusIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/ClustalIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/Interfaces.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/StockholmIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/ClustalIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/EmbossIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/Interfaces.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/MafIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/MauveIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/NexusIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/PhylipIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/StockholmIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/AlignInfo.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/_aligners.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/_aligners.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_MSAProbs.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_TCoffee.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Probcons.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Dialign.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Mafft.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Prank.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_ClustalOmega.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Clustalw.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Muscle.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_ClustalOmega.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Clustalw.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Dialign.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_MSAProbs.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Mafft.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Muscle.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Prank.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Probcons.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_TCoffee.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/AlignInfo.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/File.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/LogisticRegression.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/MarkovModel.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/MaxEntropy.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NaiveBayes.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Seq.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqFeature.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqRecord.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/_utils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/bgzf.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/kNN.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/pairwise2.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/triefind.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_GenomeDiagram.py to test_GenomeDiagram.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_trie.py to test_trie.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_translate.py to test_translate.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_seq.py to test_seq.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_samtools_tool.py to test_samtools_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_psw.py to test_psw.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_prosite2.py to test_prosite2.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_prosite1.py to test_prosite1.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_prodoc.py to test_prodoc.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_phenotype_fit.py to test_phenotype_fit.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_phenotype.py to test_phenotype.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_pairwise_aligner.py to test_pairwise_aligner.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_pairwise2.py to test_pairwise2.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_motifs_online.py to test_motifs_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_motifs.py to test_motifs.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_mmtf_online.py to test_mmtf_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_mmtf.py to test_mmtf.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_lowess.py to test_lowess.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_kNN.py to test_kNN.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_geo.py to test_geo.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_codonalign.py to test_codonalign.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_cellosaurus.py to test_cellosaurus.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_bgzf.py to test_bgzf.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_align.py to test_align.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Wise.py to test_Wise.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Uniprot.py to test_Uniprot.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_UniGene.py to test_UniGene.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Tutorial.py to test_Tutorial.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_TreeConstruction.py to test_TreeConstruction.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_TogoWS.py to test_TogoWS.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_TCoffee_tool.py to test_TCoffee_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SwissProt.py to test_SwissProt.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SubsMat.py to test_SubsMat.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SffIO.py to test_SffIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Seq_objs.py to test_Seq_objs.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqUtils.py to test_SeqUtils.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqRecord.py to test_SeqRecord.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_write.py to test_SeqIO_write.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_online.py to test_SeqIO_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_index.py to test_SeqIO_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_features.py to test_SeqIO_features.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_convert.py to test_SeqIO_convert.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_SeqXML.py to test_SeqIO_SeqXML.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_QualityIO.py to test_SeqIO_QualityIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_PdbIO.py to test_SeqIO_PdbIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_Insdc.py to test_SeqIO_Insdc.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_FastaIO.py to test_SeqIO_FastaIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_AbiIO.py to test_SeqIO_AbiIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO.py to test_SeqIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqFeature.py to test_SeqFeature.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_write.py to test_SearchIO_write.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_model.py to test_SearchIO_model.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_legacy.py to test_SearchIO_legacy.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_interproscan_xml.py to test_SearchIO_interproscan_xml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_hmmer3_text_index.py to test_SearchIO_hmmer3_text_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_hmmer3_text.py to test_SearchIO_hmmer3_text.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_hmmer3_tab_index.py to test_SearchIO_hmmer3_tab_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_hmmer3_tab.py to test_SearchIO_hmmer3_tab.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_hmmer3_domtab_index.py to test_SearchIO_hmmer3_domtab_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_hmmer3_domtab.py to test_SearchIO_hmmer3_domtab.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_hmmer2_text_index.py to test_SearchIO_hmmer2_text_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_hmmer2_text.py to test_SearchIO_hmmer2_text.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_fasta_m10_index.py to test_SearchIO_fasta_m10_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_fasta_m10.py to test_SearchIO_fasta_m10.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_exonerate_vulgar_index.py to test_SearchIO_exonerate_vulgar_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_exonerate_text_index.py to test_SearchIO_exonerate_text_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_exonerate.py to test_SearchIO_exonerate.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_blat_psl_index.py to test_SearchIO_blat_psl_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_blat_psl.py to test_SearchIO_blat_psl.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_blast_xml_index.py to test_SearchIO_blast_xml_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_blast_xml.py to test_SearchIO_blast_xml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_blast_text.py to test_SearchIO_blast_text.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_blast_tab_index.py to test_SearchIO_blast_tab_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_blast_tab.py to test_SearchIO_blast_tab.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SVDSuperimposer.py to test_SVDSuperimposer.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SCOP_online.py to test_SCOP_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SCOP_Scop.py to test_SCOP_Scop.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SCOP_Residues.py to test_SCOP_Residues.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SCOP_Raf.py to test_SCOP_Raf.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SCOP_Hie.py to test_SCOP_Hie.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SCOP_Dom.py to test_SCOP_Dom.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SCOP_Des.py to test_SCOP_Des.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SCOP_Cla.py to test_SCOP_Cla.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SCOP_Astral.py to test_SCOP_Astral.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Restriction.py to test_Restriction.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_RCSBFormats.py to test_RCSBFormats.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_QCPSuperimposer.py to test_QCPSuperimposer.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_ProtParam.py to test_ProtParam.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Probcons_tool.py to test_Probcons_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Prank_tool.py to test_Prank_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PopGen_GenePop_nodepend.py to test_PopGen_GenePop_nodepend.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Phylo_networkx.py to test_Phylo_networkx.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Phylo_matplotlib.py to test_Phylo_matplotlib.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Phylo_NeXML.py to test_Phylo_NeXML.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Phylo_CDAO.py to test_Phylo_CDAO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PhyloXML.py to test_PhyloXML.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Phylo.py to test_Phylo.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Phd.py to test_Phd.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Pathway.py to test_Pathway.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDB_vectors.py to test_PDB_vectors.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDB_Superimposer.py to test_PDB_Superimposer.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDB_StructureAlignment.py to test_PDB_StructureAlignment.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDB_ResidueDepth.py to test_PDB_ResidueDepth.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDB_Polypetide.py to test_PDB_Polypetide.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDB_MMCIFParser.py to test_PDB_MMCIFParser.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDB_MMCIF2Dict.py to test_PDB_MMCIF2Dict.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDB_KDTree.py to test_PDB_KDTree.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDB_FragmentMapper.py to test_PDB_FragmentMapper.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDBList.py to test_PDBList.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDB.py to test_PDB.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PAML_yn00.py to test_PAML_yn00.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PAML_codeml.py to test_PAML_codeml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PAML_baseml.py to test_PAML_baseml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Nexus.py to test_Nexus.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_NaiveBayes.py to test_NaiveBayes.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_NCBI_qblast.py to test_NCBI_qblast.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_NCBI_BLAST_tools.py to test_NCBI_BLAST_tools.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_NCBIXML.py to test_NCBIXML.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_NCBITextParser.py to test_NCBITextParser.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Muscle_tool.py to test_Muscle_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Medline.py to test_Medline.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_MarkovModel.py to test_MarkovModel.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Mafft_tool.py to test_Mafft_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_MafIO_index.py to test_MafIO_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_LogisticRegression.py to test_LogisticRegression.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Location.py to test_Location.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_KeyWList.py to test_KeyWList.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_KGML_nographics.py to test_KGML_nographics.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_KGML_graphics_online.py to test_KGML_graphics_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_KGML_graphics.py to test_KGML_graphics.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_KEGG_online.py to test_KEGG_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_KEGG.py to test_KEGG.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_KDTree.py to test_KDTree.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_HMMGeneral.py to test_HMMGeneral.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_HMMCasino.py to test_HMMCasino.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_GraphicsGeneral.py to test_GraphicsGeneral.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_GraphicsDistribution.py to test_GraphicsDistribution.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_GraphicsChromosome.py to test_GraphicsChromosome.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_GraphicsBitmaps.py to test_GraphicsBitmaps.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_GenBank_unittest.py to test_GenBank_unittest.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_GenBank.py to test_GenBank.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_File.py to test_File.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Fasttree_tool.py to test_Fasttree_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_FSSP.py to test_FSSP.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_ExPASy.py to test_ExPASy.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Enzyme.py to test_Enzyme.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Entrez_parser.py to test_Entrez_parser.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Entrez_online.py to test_Entrez_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Entrez.py to test_Entrez.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_EmbossPrimer.py to test_EmbossPrimer.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Emboss.py to test_Emboss.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_EMBL_unittest.py to test_EMBL_unittest.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Dialign_tool.py to test_Dialign_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_DSSP_tool.py to test_DSSP_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Crystal.py to test_Crystal.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Consensus.py to test_Consensus.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Compass.py to test_Compass.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_ColorSpiral.py to test_ColorSpiral.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_CodonUsage.py to test_CodonUsage.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_CodonTable.py to test_CodonTable.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Cluster.py to test_Cluster.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Clustalw_tool.py to test_Clustalw_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_ClustalOmega_tool.py to test_ClustalOmega_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Chi2.py to test_Chi2.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_CelFile.py to test_CelFile.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_CAPS.py to test_CAPS.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_BioSQL_sqlite3_online.py to test_BioSQL_sqlite3_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_BioSQL_sqlite3.py to test_BioSQL_sqlite3.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_BioSQL_psycopg2_online.py to test_BioSQL_psycopg2_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_BioSQL_mysql_connector_online.py to test_BioSQL_mysql_connector_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_BioSQL_mysql_connector.py to test_BioSQL_mysql_connector.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_BioSQL_MySQLdb_online.py to test_BioSQL_MySQLdb_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Application.py to test_Application.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_AlignInfo.py to test_AlignInfo.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_AlignIO_convert.py to test_AlignIO_convert.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_AlignIO_PhylipIO.py to test_AlignIO_PhylipIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_AlignIO_MauveIO.py to test_AlignIO_MauveIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_AlignIO_FastaIO.py to test_AlignIO_FastaIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_AlignIO_EmbossIO.py to test_AlignIO_EmbossIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_AlignIO_ClustalIO.py to test_AlignIO_ClustalIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_AlignIO.py to test_AlignIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Affy.py to test_Affy.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Ace.py to test_Ace.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/seq_tests_common.py to seq_tests_common.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/search_tests_common.py to search_tests_common.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/run_tests.py to run_tests.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/requires_wise.py to requires_wise.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/requires_internet.py to requires_internet.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/common_BioSQL_online.py to common_BioSQL_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/common_BioSQL.py to common_BioSQL.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/gen_results.py to gen_results.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/www_blast.py to www_blast.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/swissprot.py to swissprot.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/nmr/simplepredict.py to simplepredict.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/make_subsmat.py to make_subsmat.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/getgene.py to getgene.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/fasta_iterator.py to fasta_iterator.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/fasta_dictionary.py to fasta_dictionary.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/clustal_run.py to clustal_run.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/Proux_et_al_2002_Figure_6.py to Proux_et_al_2002_Figure_6.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/ACT_example.py to ACT_example.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL/BioSeq.py to BioSeq.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL/DBUtils.py to DBUtils.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL/Loader.py to Loader.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/phenotype/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/phenotype/phen_micro.py to phen_micro.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/phenotype/pm_fitting.py to pm_fitting.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree/KDTree.py to KDTree.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Cluster/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Affy/CelFile.py to CelFile.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Affy/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/_py3k/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Wise/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Wise/dnal.py to dnal.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Wise/psw.py to psw.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniProt/GOA.py to GOA.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniProt/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniGene/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/_paml.py to _paml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/baseml.py to baseml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/chi2.py to chi2.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/codeml.py to codeml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/yn00.py to yn00.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/BaseTree.py to BaseTree.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/CDAO.py to CDAO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/CDAOIO.py to CDAOIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Consensus.py to Consensus.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/NeXML.py to NeXML.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Newick.py to Newick.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/NewickIO.py to NewickIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/NexusIO.py to NexusIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PhyloXML.py to PhyloXML.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/_io.py to _io.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/_utils.py to _utils.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/TogoWS/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SwissProt/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SubsMat/FreqTable.py to FreqTable.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SubsMat/MatrixInfo.py to MatrixInfo.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SubsMat/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Statistics/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Statistics/lowess.py to lowess.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications/_bwa.py to _bwa.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications/_samtools.py to _samtools.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Ace.py to Ace.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Phd.py to Phd.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils/lcc.py to lcc.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/AbiIO.py to AbiIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/AceIO.py to AceIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/IgIO.py to IgIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/PdbIO.py to PdbIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/PirIO.py to PirIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/SffIO.py to SffIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/TabIO.py to TabIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/_convert.py to _convert.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/_index.py to _index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/InterproscanIO/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py to interproscan_xml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO/_base.py to _base.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py to exonerate_text.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py to exonerate_vulgar.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO/_base.py to _base.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py to hmmer3_domtab.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py to hmmer3_tab.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py to hmmer3_text.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO/blast_text.py to blast_text.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model/_base.py to _base.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model/hit.py to hit.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model/hsp.py to hsp.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model/query.py to query.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_legacy/NCBIStandalone.py to NCBIStandalone.pyc byte-compiling 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/build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP/Cla.py to Cla.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP/Des.py to Des.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP/Dom.py to Dom.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP/Hie.py to Hie.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP/Raf.py to Raf.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP/Residues.py to Residues.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.pyc byte-compiling 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FileParser.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop/Utils.py to Utils.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.pyc byte-compiling 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/build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/Comparative.py to Comparative.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/Distribution.py to Distribution.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/KGML_vis.py to KGML_vis.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Geo/Record.py to Record.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Geo/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank/Record.py to Record.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank/Scanner.py to Scanner.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank/utils.py to utils.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/FSSP/FSSPTools.py to FSSPTools.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/FSSP/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/FSSP/fssp_rec.py to fssp_rec.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy/Prosite.py to Prosite.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/Parser.py to Parser.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss/Applications.py to Applications.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss/Primer3.py to Primer3.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data/CodonTable.py to CodonTable.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data/IUPACData.py to IUPACData.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data/SCOPData.py to SCOPData.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Crystal/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Compass/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign/chisq.py to chisq.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign/codonalignment.py to codonalignment.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign/codonalphabet.py to codonalphabet.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign/codonseq.py to codonseq.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/CAPS/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast/Applications.py to Applications.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast/Record.py to Record.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Application/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Alphabet/IUPAC.py to IUPAC.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Alphabet/Reduced.py to Reduced.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Alphabet/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO/MafIO.py to MafIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO/MauveIO.py to MauveIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/File.py to File.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Index.py to Index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/LogisticRegression.py to LogisticRegression.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/MarkovModel.py to MarkovModel.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/MaxEntropy.py to MaxEntropy.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/NaiveBayes.py to NaiveBayes.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Seq.py to Seq.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqFeature.py to SeqFeature.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqRecord.py to SeqRecord.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/_utils.py to _utils.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/bgzf.py to bgzf.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/kNN.py to kNN.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/pairwise2.py to pairwise2.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/triefind.py to triefind.pyc running install_egg_info Copying biopython.egg-info to /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/biopython-1.73.egg-info Skipping SOURCES.txt running install_scripts pybuild --install -i python{version} -p 3.7 --dest-dir /build/python-biopython-1.73\+dfsg/debian/tmp I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/python-biopython-1.73+dfsg/debian/tmp running install running build running build_py running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution writing manifest file 'biopython.egg-info/SOURCES.txt' running build_ext running install_lib creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/tmpdirprankmsaK103pc creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/tmpdirprankmsaywBfhd copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output.best.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output.best.fas -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_trie.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_translate.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_seq.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_samtools_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_psw.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_prosite2.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_prosite1.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_prodoc.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_phenotype_fit.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_phenotype.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_pairwise_aligner.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_pairwise2.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_motifs_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_motifs.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_mmtf_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_mmtf.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_lowess.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_kNN.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_geo.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_codonalign.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_cellosaurus.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_align.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/requires_wise.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Wise.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Uniprot.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_UniGene.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Tutorial.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_TreeConstruction.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_TogoWS.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_TCoffee_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SwissProt.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SubsMat.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SffIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Seq_objs.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqUtils.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqRecord.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_write.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_bgzf.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_features.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_convert.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_SeqXML.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_QualityIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_PdbIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_Insdc.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_FastaIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_AbiIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqFeature.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_write.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_model.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_legacy.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_interproscan_xml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_hmmer3_text_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_hmmer3_text.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_hmmer3_tab_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_hmmer3_tab.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_hmmer2_text_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_hmmer2_text.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_fasta_m10_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_fasta_m10.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_exonerate_vulgar_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_exonerate_text_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_exonerate.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_blat_psl_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_blat_psl.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_blast_xml_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_blast_xml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_blast_text.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/search_tests_common.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_blast_tab_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_blast_tab.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SVDSuperimposer.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SCOP_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SCOP_Scop.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SCOP_Residues.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SCOP_Raf.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SCOP_Hie.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SCOP_Dom.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SCOP_Des.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SCOP_Cla.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SCOP_Astral.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Restriction.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_RCSBFormats.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_QCPSuperimposer.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_ProtParam.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Probcons_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Prank_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PopGen_GenePop_nodepend.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Phylo_networkx.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Phylo_matplotlib.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Phylo_NeXML.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Phylo_CDAO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PhyloXML.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Phylo.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Phd.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Pathway.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDB_vectors.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDB_Superimposer.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDB_StructureAlignment.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDB_ResidueDepth.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDB_Polypetide.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDB_MMCIFParser.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDB_MMCIF2Dict.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDB_KDTree.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDB_FragmentMapper.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDBList.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDB.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PAML_yn00.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PAML_codeml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PAML_baseml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Nexus.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_NaiveBayes.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_NCBI_qblast.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_NCBI_BLAST_tools.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_NCBIXML.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_NCBITextParser.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Muscle_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Medline.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_MarkovModel.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Mafft_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_MafIO_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_LogisticRegression.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Location.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_KeyWList.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_KGML_nographics.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_KGML_graphics_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_KGML_graphics.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_KEGG_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_KEGG.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_KDTree.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_HMMGeneral.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_HMMCasino.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_GraphicsGeneral.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_GraphicsDistribution.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_GraphicsChromosome.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_GraphicsBitmaps.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_GenomeDiagram.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_GenBank_unittest.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_GenBank.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_File.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Fasttree_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_FSSP.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_ExPASy.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Enzyme.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Entrez_parser.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Entrez_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Entrez.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_EmbossPrimer.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Emboss.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_EMBL_unittest.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Dialign_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_DSSP_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Crystal.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Consensus.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Compass.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_ColorSpiral.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_CodonUsage.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_CodonTable.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Cluster.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Clustalw_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_ClustalOmega_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Chi2.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_CelFile.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_CAPS.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_BioSQL_sqlite3_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_BioSQL_sqlite3.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_BioSQL_psycopg2_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_BioSQL_mysql_connector_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_BioSQL_mysql_connector.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/common_BioSQL_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/seq_tests_common.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/common_BioSQL.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_BioSQL_MySQLdb_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Application.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_AlignInfo.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_AlignIO_convert.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_AlignIO_PhylipIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_AlignIO_MauveIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_AlignIO_FastaIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_AlignIO_EmbossIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_AlignIO_ClustalIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_AlignIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Affy.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Ace.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/requires_internet.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_GenomeDiagram.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/tmp_MAF/ucsc_mm9_chr10_rel_rel.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/tmp_MAF/ucsc_mm9_chr10_rel_abs.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/tmp_MAF/ucsc_mm9_chr10_bad.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/tmp_MAF/ucsc_mm9_chr10_abs_rel.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/tmp_MAF/ucsc_mm9_chr10_abs_abs.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/tmp_MAF/ucsc_mm9_chr10.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_trie.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_translate.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_seq.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_samtools_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_psw.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_prosite2.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_prosite1.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_prodoc.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_phenotype_fit.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_phenotype.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_pairwise_aligner.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_pairwise2.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_motifs_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_motifs.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_mmtf_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_mmtf.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_lowess.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_kNN.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_geo.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_codonalign.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_cellosaurus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_bgzf.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_align.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Wise.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Uniprot.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_UniGene.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Tutorial.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_TreeConstruction.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_TogoWS.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_TCoffee_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SwissProt.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SubsMat.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SffIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Seq_objs.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqUtils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqRecord.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_write.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_features.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_convert.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_SeqXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_QualityIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_PdbIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_Insdc.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_FastaIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_AbiIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqFeature.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_write.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_model.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_legacy.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_interproscan_xml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_hmmer3_text_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_hmmer3_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_hmmer3_tab_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_hmmer3_tab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_hmmer3_domtab_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_hmmer3_domtab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_hmmer2_text_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_hmmer2_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_fasta_m10_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_fasta_m10.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_exonerate_vulgar_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_exonerate_text_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_exonerate.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_blat_psl_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_blat_psl.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_blast_xml_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_blast_xml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_blast_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_blast_tab_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_blast_tab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SVDSuperimposer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SCOP_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SCOP_Scop.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SCOP_Residues.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SCOP_Raf.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SCOP_Hie.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SCOP_Dom.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SCOP_Des.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SCOP_Cla.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SCOP_Astral.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Restriction.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_RCSBFormats.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_QCPSuperimposer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_ProtParam.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Probcons_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Prank_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PopGen_GenePop_nodepend.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Phylo_networkx.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Phylo_matplotlib.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Phylo_NeXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Phylo_CDAO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PhyloXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Phylo.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Phd.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Pathway.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDB_vectors.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDB_Superimposer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDB_StructureAlignment.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDB_ResidueDepth.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDB_Polypetide.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDB_MMCIFParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDB_MMCIF2Dict.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDB_KDTree.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDB_FragmentMapper.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDBList.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDB.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PAML_yn00.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PAML_codeml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PAML_baseml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Nexus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NaiveBayes.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_qblast.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_BLAST_tools.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBIXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBITextParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Muscle_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Medline.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_MarkovModel.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Mafft_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_MafIO_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_LogisticRegression.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Location.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_KeyWList.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_KGML_nographics.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_KGML_graphics_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_KGML_graphics.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_KEGG_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_KEGG.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_KDTree.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_HMMGeneral.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_HMMCasino.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_GraphicsGeneral.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_GraphicsDistribution.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_GraphicsChromosome.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_GraphicsBitmaps.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_GenBank_unittest.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_GenBank.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_File.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Fasttree_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_FSSP.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_ExPASy.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Enzyme.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Entrez_parser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Entrez_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Entrez.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_EmbossPrimer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Emboss.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_EMBL_unittest.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Dialign_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_DSSP_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Crystal.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Consensus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Compass.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_ColorSpiral.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_CodonUsage.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_CodonTable.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Cluster.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Clustalw_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_ClustalOmega_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Chi2.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_CelFile.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_CAPS.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_BioSQL_sqlite3_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_BioSQL_sqlite3.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_BioSQL_psycopg2_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_BioSQL_mysql_connector_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_BioSQL_mysql_connector.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_BioSQL_MySQLdb_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Application.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_AlignInfo.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_AlignIO_convert.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_AlignIO_PhylipIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_AlignIO_MauveIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_AlignIO_FastaIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_AlignIO_EmbossIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_AlignIO_ClustalIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_AlignIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Affy.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Ace.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/seq_tests_common.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/search_tests_common.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/run_tests.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/requires_wise.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/requires_internet.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/phenotype/SmallPlates.csv -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/phenotype/SmallPlate_2.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/phenotype/SmallPlate.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/phenotype/Plates.csv -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/phenotype/Plate_2.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/phenotype/Plate.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/phenotype/BadPlate.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/phenotype creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_translate -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_property_manager -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_geo -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_align -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_SubsMat -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_SeqIO -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_SearchIO_legacy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_PDB -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_NCBI_qblast -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_Location -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_KEGG -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_HMMCasino -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_GenBank -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_GFF2 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_GFF -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_File -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_Fasttree_tool -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_FSSP -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_CodonUsage -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_Clustalw_tool -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_Clustalw -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_ClustalOmega_tool -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_AlignIO_MauveIO -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_AlignIO -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/transfac.dat -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/minimal_test.meme -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/meme_v_4_11_4.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/meme.rna.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/meme.protein.tcm.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/meme.protein.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/meme.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/meme.dna.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/mast.protein.tcm.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/mast.protein.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/mast.dna.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/alignace.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/SRF.pfm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/REB1.pfm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/Arnt.sites -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/common_BioSQL_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/common_BioSQL.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/pro5.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/pro4.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/pro3.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/pro2.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/pro1.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/nucl5.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/nucl4.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/nucl3.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/nucl2.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/nucl1.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/egfr_pro.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/egfr_nucl.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/egfr_id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/drosophilla.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/adh.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/biosql.ini.sample -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/biosql.ini.appveyor -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Wise/human_114_g02_exons.fna_01 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Wise/human_114_g01_exons.fna_01 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Wise creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/UniProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/UniProt/goa_yeast.gaf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/UniProt creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/UniGene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/UniGene/Mdm_partial.data -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/UniGene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/UniGene/Hs.2.data -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/UniGene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/UniGene/Eca.1.2425.data -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/UniGene creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/upgma.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/trees.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/test.log -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/strict_refs.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/pars3.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/nj.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/neighbor_trees.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/msa.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/majority_ref.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/consensus_refs.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/adam_refs.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/uni003 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/uni002 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/uni001 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp016 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp015 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp014 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp013 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp012 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp011 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp010 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp009 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp008 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp007 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp006 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp005 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp004 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp003 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp002 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp001 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/multi_ex.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/multi_ex.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/multi_ex.rdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/multi_ex.list -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/multi_ex.gff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/multi_ex.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/keywlist2.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/keywlist.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/README -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/R5HY77.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/Q13639.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/Q13639.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/P97881.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/P84001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/H2CNN8.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/H2CNN8.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/F2CXE6.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/F2CXE6.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SubsMat/redAltAADistrib.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SubsMat/redAADistrib.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SubsMat/protein_freq.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SubsMat/protein_count.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SubsMat/acc_rep_mat.pik -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SubsMat/aaDistrib.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SubsMat creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Stockholm copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Stockholm/simple.sth -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Stockholm copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Stockholm/funny.sth -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Stockholm creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SeqXML/rna_example.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SeqXML/protein_example.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SeqXML/global_species_example.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SeqXML/dna_example.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SeqXML/corrupt_example2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SeqXML/corrupt_example1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SeqXML creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/sam2.sam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/sam1.sam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/readme.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/ex1_refresh.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/ex1_header.sam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/ex1_header.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/ex1.sam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/ex1.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/ex1.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/bam2_sorted.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/bam2.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/bam1_sorted.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/bam1.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Saf copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Saf/saf1.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Saf creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/testDom.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-50-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-5-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-4-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-3-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-25-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-20-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2,3-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-15-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-10-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1,3-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-0,3-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+1-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0,7-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-95-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-90-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-70-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-50-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-40-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-35-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-30-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-25-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-20-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-100-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-10-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/raftest.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/dir.hie.scop.txt_test -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/dir.des.scop.txt_test -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/dir.cla.scop.txt_test -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/triple_sff_rel_paths.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/triple_sff.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/paired.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/invalid_paired_E3MFGYR02.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/invalid_greek_E3MFGYR02.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/greek.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_random_10_reads.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_random_10_reads.qual -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_random_10_reads.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_no_manifest.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_index_in_middle.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_index_at_start.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_alt_index_at_start.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_alt_index_at_end.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Registry copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Registry/seqs.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Registry copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Registry/bt001 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Registry copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Registry/EDD_RAT.dat -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Registry creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/taqi.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/taqi.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/pvuii.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/pvuii.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/foki.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/foki.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/crei.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/crei.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/cac81.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/cac81.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/bamii.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/bamii.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/zero_length.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/wrapping_original_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/wrapping_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/wrapping_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/wrapping_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/tricky.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/solexa_full_range_original_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/solexa_full_range_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/solexa_full_range_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/solexa_full_range_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/solexa_faked.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/solexa_example.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/sanger_full_range_original_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/sanger_full_range_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/sanger_full_range_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/sanger_full_range_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/sanger_faked.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/sanger_93.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/misc_rna_original_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/misc_rna_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/misc_rna_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/misc_rna_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/misc_dna_original_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/misc_dna_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/misc_dna_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/misc_dna_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/longreads_original_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/longreads_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/longreads_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/longreads_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/illumina_full_range_original_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/illumina_full_range_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/illumina_full_range_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/illumina_full_range_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/illumina_faked.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/example_dos.fastq.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/example_dos.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/example.qual -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/example.fastq.gz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/example.fastq.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/example.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/example.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_trunc_in_title.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_trunc_in_seq.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_trunc_in_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_trunc_in_plus.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_trunc_at_seq.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_trunc_at_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_trunc_at_plus.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_tabs.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_spaces.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_short_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_qual_vtab.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_qual_unit_sep.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_qual_tab.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_qual_space.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_qual_null.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_qual_escape.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_qual_del.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_no_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_long_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_double_seq.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_double_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_diff_ids.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/ps00546.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/ps00488.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/ps00432.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/ps00165.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/ps00159.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/ps00107.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/prosite.excerpt.doc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/pdoc00933.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/pdoc00787.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/pdoc00640.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/pdoc00472.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/pdoc00424.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/pdoc00340.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/pdoc00149.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/pdoc00144.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/pdoc00113.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/pdoc00100.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PopGen/haplo3.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PopGen/haplo2.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PopGen/haplo.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PopGen/c3space.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PopGen/c3line.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PopGen/c2space.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PopGen/c2line.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PopGen/big.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PopGen/README -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PopGen creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PhyloXML/phyloxml_examples.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PhyloXML/o_tol_332_d_dollo.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PhyloXML/made_up.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PhyloXML/example.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PhyloXML/distribution.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PhyloXML/bcl_2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PhyloXML/apaf.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PhyloXML creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phylip/sequential2.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phylip/sequential.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phylip/reference_dna2.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phylip/reference_dna.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phylip/random.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phylip/interlaced2.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phylip/interlaced.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phylip/horses.tree -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phylip/horses.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phylip/hennigian.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phd copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phd/phd_solexa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phd copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phd/phd_454 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phd copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phd/phd2 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phd copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phd/phd1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phd creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/occupancy.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/lib_10_z_5.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/ions.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/dssp_xtra_Sander.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/alignment_file.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/a_structure.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/a_structure.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/Wilke_RASA.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/Sander_RASA.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/Miller_RASA.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/4ZHL.mmtf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/4ZHL.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/4Q9R_min.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/4CUP.mmtf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/4CUP.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/3JQH.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/2XHE.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/2XHE.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/2OFG.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/2BEG_noheader.dssp -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/2BEG.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/2BEG.dssp -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/2BEG.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1SSU_mod.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1SSU_mod.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1MOM_min.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1LCD.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1LCD.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1AS5.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1A8O.xyzr -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1A8O.rsa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1A8O.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1A8O.mmtf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1A8O.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1A8O.asa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/gen_results.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Trees/species.tree -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Trees/lysin.trees.4.6 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Trees/lysin.trees -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Trees/bad.tree -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Trees creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/yn00/yn00_long-4_8.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/yn00/yn00-4_8.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/yn00/yn00-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/yn00/yn00-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/yn00/yn00-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/yn00/yn00-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/yn00/yn00-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/yn00/yn00-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/yn00/yn00-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/yn00 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/tree_regexp_versatility.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/pairwise creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/freeratio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/clademodelC creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/SE/SE-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/SE/SE-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/SE/SE-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/SE/SE-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/SE/SE-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/SE/SE-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/SE/SE-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/SE creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/versions/baseml44c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/versions/baseml44.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/versions/baseml43.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/versions/baseml41.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/versions creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK4-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK4-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK4-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK3-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK3-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK3-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK2-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK2-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK2-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK1-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK1-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK1-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model8-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model8-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model8-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model8-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model8-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model8-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model8-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model7-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model7-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model7-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model7-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model7-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model7-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model7-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model6-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model6-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model6-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model6-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model6-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model6-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model6-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model5-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model5-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model5-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model5-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model5-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model5-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model5-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model4-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model4-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model4-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model4-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model4-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model4-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model4-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model3-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model3-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model3-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model3-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model3-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model3-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model3-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model2-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model2-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model2-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model2-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model2-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model2-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model2-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model1-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model1-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model1-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model1-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model1-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model1-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model1-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model0-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model0-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model0-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model0-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model0-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model0-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model0-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/baseml_alpha1rho1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/baseml_SE.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/SE/SE-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/SE/SE-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/SE/SE-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/SE/SE-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/SE/SE-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/SE/SE-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/SE/SE-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/bad_results.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/yn00/yn00_long.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/yn00/yn00.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/yn00.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/species.tree -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/pairwise.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/ngene2_mgene34.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/ngene2_mgene1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/ngene2_mgene02.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/m2a_rel.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/freeratio.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/codeml.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/clademodelC.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/branchsiteA.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/all_NSsites.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/aa_pairwise.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/aa_model0.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/SE.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/NSsite3.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/nparK4.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/nparK3.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/nparK2.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/nparK1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/nhomo4.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/nhomo3.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/nhomo1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/model8.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/model7.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/model6.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/model5.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/model4.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/model3.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/model2.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/model1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/model0.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/baseml.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/alpha1rho1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/SE.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/bad3.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/bad2.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/bad1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Alignments/lysinYangSwanson2002.nuc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Alignments/longnames.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Alignments/alignment.phylip -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Alignments/aa_alignment.phylip -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Alignments creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Nexus/vSysLab_Oreiscelio_discrete+continuous.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Nexus/vSysLab_Heptascelio_no-states_10+chars.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Nexus/vSysLab_Ganaspidium_multistate.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Nexus/test_Nexus_input.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Nexus/test.new -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Nexus/int_node_labels.nwk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Nexus/codonposset.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Nexus/bats.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Nexus/ByteOrderMarkFile.nwk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Nexus creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeuralNetwork copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeuralNetwork/repeat.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeuralNetwork copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeuralNetwork/enolase.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeuralNetwork creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/trees.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/trees-uris.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/treebase-record.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/tolweb.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/timetree.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/taxa.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/sets.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/phenoscape.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/nexml.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/meta_types.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/meta_taxa.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/edgelabels.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/characters.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NBRF/clustalw.pir -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NBRF/DMB_prot.pir -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NBRF/DMA_nuc.pir -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NBRF/Cw_prot.pir -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NBRF/B_nuc.pir -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NBRF creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/transfac.dat -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/meme.protein.tcm.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/meme.protein.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/meme.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/meme.dna.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/mast.protein.tcm.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/mast.protein.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/mast.dna.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/alignace.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/SRF.pfm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/REB1.pfm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/Arnt.sites -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MetaTool/meta9.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MetaTool/meta2.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MetaTool/meta.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MetaTool/Meta8.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MetaTool/Meta7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MetaTool/Meta6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MetaTool/Meta4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MetaTool/Meta3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MetaTool creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Medline copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Medline/pubmed_result3.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Medline copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Medline/pubmed_result2.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Medline copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Medline/pubmed_result1.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Medline creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Mauve copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Mauve/simple.xmfa.bbcols -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Mauve copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Mauve/simple.xmfa.backbone -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Mauve copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Mauve/simple.xmfa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Mauve copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Mauve/simple.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Mauve creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/wrong_version.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/unfinished.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/ucsc_test.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/ucsc_mm9_chr10_big.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/ucsc_mm9_chr10_big.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/ucsc_mm9_chr10_bad.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/ucsc_mm9_chr10_bad.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/ucsc_mm9_chr10.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/ucsc_mm9_chr10.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/length_coords_mismatch.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/invalid.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/humor.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/corrupt.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/cnksr3.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/bundle_without_target.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/bug2453.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/map03070.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/map01100.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/map00950.rea -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/ko03070.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/ko01100.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/ko00253.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/ko00010.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/gene.sample -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/enzyme.sample -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/enzyme.new -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/enzyme.irregular -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/enzyme.4letter -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/compound.sample -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/compound.irregular -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/InterProScan copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/InterProScan/test_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/InterProScan creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/IntelliGenetics/vpu_nucaligned.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/IntelliGenetics/VIF_mase-pro.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/IntelliGenetics/TAT_mase_nuc.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/IntelliGenetics creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_31b2_phmmer_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_31b2_hmmsearch_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_31b2_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_31b2_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_31b1_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_31b1_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmsearch_005.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmsearch_004.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmsearch_003.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmsearch_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmscan_010.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmscan_009.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmscan_008.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmscan_007.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmscan_006.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmscan_005.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmscan_004.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmscan_003.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmscan_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_24_hmmpfam_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_23_hmmpfam_004.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_23_hmmpfam_003.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_23_hmmpfam_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_23_hmmpfam_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_22_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_22_hmmpfam_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_21_hmmpfam_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_20_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/tab_31b1_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/tab_31b1_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/tab_30_hmmscan_004.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/tab_30_hmmscan_003.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/tab_30_hmmscan_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/tab_30_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/domtab_31b1_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/domtab_31b1_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/domtab_30_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/domtab_30_hmmscan_004.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/domtab_30_hmmscan_003.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/domtab_30_hmmscan_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/domtab_30_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/map03070_transparency.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/map01100_transparency.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/map03070_colors.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/map01100_widths.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/map03070_original.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/map01100_original.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/scatter_test_7.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/scatter_test_1.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/simple_bar.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/multi_bar.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/tRNA_chrom.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/tRNA_chrom_sf.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/organism.svg -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/organism.eps -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/organism.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/random_organism.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/scatter_test.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_OCTO_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_OCTO.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_OCTO.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_JAGGY_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_JAGGY.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_JAGGY.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_BIGARROW_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_BIGARROW.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_BIGARROW.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_ARROW_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_ARROW.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_ARROW.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_OCTO_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_OCTO.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_OCTO.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_JAGGY_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_JAGGY.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_JAGGY.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_BIGARROW_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_BIGARROW.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_BIGARROW.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_ARROW_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_ARROW.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_ARROW.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_labels_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_labels.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_labels.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_bigarrow_shafts_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_bigarrow_shafts.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_bigarrow_shafts.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_arrow_shafts_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_arrow_shafts.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_arrow_shafts.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_arrows_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_arrows.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_arrows.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigils_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigils.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigils.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/labels_default_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/labels_default.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/labels_default.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/line_graph_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/line_graph.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_region_circular.svg -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_region_circular.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_region_linear.svg -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_region_linear.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_by_obj_frag_linear.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_by_obj_linear.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_by_obj_frag_circular.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_by_obj_circular.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_by_meth_circular.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_by_meth_linear.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/square_test.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/spiral_test.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/README -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/soft_ex_series.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/soft_ex_platform.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/soft_ex_family.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/soft_ex_dual.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/soft_ex_affy_chp.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/soft_ex_affy.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/GSM804.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/GSM700.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/GSM691.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/GSM645.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/GSE16.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/wrong_sequence_indent.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/qualifier_escaping_write.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/qualifier_escaping_read.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/protein_refseq2.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/protein_refseq.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/pri1.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/pBAD30.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/origin_line.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/one_of.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/noref.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/no_origin_no_end.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/no_end_marker.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/negative_location.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/iro.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/invalid_product.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/invalid_misc_feature.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/invalid_locus_line_spacing.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/gbvrl1_start.seq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/extra_keywords.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/empty_version.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/empty_feature_qualifier.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/empty_accession.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/dbsource_wrap.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/cor6_6.gb.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/cor6_6.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/blank_seq.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/bad_origin_wrap_linear.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/bad_origin_wrap_CDS.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/bad_origin_wrap.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/bad_loc_wrap.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/arab1.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/NT_019265.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/NP_416719.gbwithparts -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/NC_005816.tsv -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/NC_005816.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/NC_005816.fna -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/NC_005816.ffn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/NC_005816.faa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/NC_000932.gb.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/NC_000932.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/NC_000932.faa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/KF527485_output.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/KF527485.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/HM138502_output.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/HM138502.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/EU851978_output.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/EU851978.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/DS830848.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/1MRR_A.gp -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GFF/multi.fna -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GFF/NC_001802x.fna -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GFF/NC_001802lc.fna -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GFF/NC_001802.fna -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GFF/NC_001422.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GFF creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/wisteria.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/sweetpea.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/rosemary.pro -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/rose.pro -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/phlox.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output016.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output015.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output014.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output013.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output012.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output011.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output010.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output009.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output008.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output007.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output006.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output005.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output004.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output003.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output002.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output001.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/lupine.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/loveliesbleeding.pro -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/lavender.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/fa01 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/f003 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/f002 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/f001 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/elderberry.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/dups.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/centaurea.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/aster_no_wrap.pro -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/aster.pro -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/README -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/FSSP/1cnv.fssp -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/FSSP creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/ExtendedPhylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/ExtendedPhylip/primates.phyx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/ExtendedPhylip creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_q_none.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_q_multiple_vulgar.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_q_multiple.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_o_vulgar_fshifts2.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_o_vulgar_fshifts.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_o_vulgar_cigar.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_o_vulgar.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_ungapped_trans.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_ungapped.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_protein2genome.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_protein2dna_fshifts.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_protein2dna.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_ner.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_genome2genome.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_est2genome.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_dna2protein.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_coding2genome.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_coding2coding_fshifts.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_coding2coding.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_cdna2genome.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_affine_local.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Enzymes copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Enzymes/valine.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Enzymes copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Enzymes/proline.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Enzymes copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Enzymes/lipoprotein.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Enzymes copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Enzymes/lactate.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Enzymes creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/taxonomy.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/pubmed6.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/pubmed5.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/pubmed4.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/pubmed3.html -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/pubmed2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/pubmed1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/protein.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/nucleotide2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/nucleotide1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/ncbi_mim.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/journals.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esummary8.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esummary7.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esummary6.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esummary5.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esummary4.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esummary3.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esummary2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esummary1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/espell.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esearch8.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esearch7.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esearch6.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esearch5.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esearch4.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esearch3.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esearch2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esearch1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/epost3.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/epost2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/epost1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/elink8.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/elink7.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/elink6.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/elink5.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/elink4.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/elink3.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/elink2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/elink1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/einfo4.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/einfo3.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/einfo2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/einfo1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/egquery2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/egquery1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/efetch_schemas.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/water2.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/water.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/short.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/no_oligo.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/needle_asis.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/needle.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/matcher_simple.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/matcher_pair.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/internal_oligo.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/emboss_pair_aln_full_blank_line.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/cds_reverse.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/cds_forward.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/bac_find.psearch -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/bac_find.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/alignret.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/NirK_full.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/NirK.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/xx_after_co.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/patents.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/location_wrap.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/kipo_prt_sample.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/hla_3260_sample.imgt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/epo_prt_selection.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/embl_with_0_line.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/U87107.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/TRBG361.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/SC10H5.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/RepBase23.02.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/Human_contigs.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/DS830848.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/DD231055_edited2.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/DD231055_edited.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/AE017046.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/AAA03323.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/A04195.imgt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/101ma_no_coords.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Compass copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Compass/comtest2 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Compass copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Compass/comtest1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Compass creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/CodonUsage copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/CodonUsage/HighlyExpressedGenes.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/CodonUsage creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Cluster/cyano.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Cluster/README -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Cluster creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Clustalw/temp horses.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Clustalw/protein.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Clustalw/promals3d.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Clustalw/opuntia.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Clustalw/odd_consensus.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Clustalw/hedgehog.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Clustalw/cw02.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Clustalw creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Cellosaurus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Cellosaurus/cell_lines_3.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Cellosaurus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Cellosaurus/cell_lines_2.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Cellosaurus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Cellosaurus/cell_lines_1.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Cellosaurus creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/CDAO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/CDAO/test.cdao -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/CDAO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/pslx_35_002.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/pslx_34_005.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/pslx_34_004.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/pslx_34_003.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/pslx_34_002.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/pslx_34_001.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/psl_35_002.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/psl_35_001.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/psl_34_005.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/psl_34_004.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/psl_34_003.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/psl_34_002.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/psl_34_001.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/mirna.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/html_msgid_29_blastx_001.html -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_tblastx_004.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_tblastx_003.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_tblastx_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_tblastx_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_tblastn_005.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_tblastn_004.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_tblastn_003.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_tblastn_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_tblastn_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastx_004.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastx_003.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastx_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastx_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastp_005.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastp_004.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastp_003.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastp_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastp_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastn_006.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastn_005.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastn_004.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastn_003.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastn_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastn_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2222_blastx_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2222_blastp_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2218_blastp_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2218_blastp_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2218L_rpsblast_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2218L_blastp_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2212L_tblastx_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2212L_tblastn_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2212L_blastx_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2212L_blastp_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2212L_blastn_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/wnts.xml.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/wnts.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2230_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_tblastx_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_tblastx_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_tblastx_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_tblastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_tblastn_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_tblastn_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_tblastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastx_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastx_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastx_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastp_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastp_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastp_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastn_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastn_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2222_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2222L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2221L_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2220L_blastx_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2220L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2216L_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2215L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2208L_psiblast_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2202L_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2202L_blastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2202L_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2201L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2102L_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2014L_psiblast_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2014L_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2012L_psiblast_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_tblastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_tblastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_phiblast_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_phiblast_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_phiblast_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastx_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastp_007.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastp_006.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastp_005.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastp_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastp_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastp_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastn_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastn_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_tblastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_tblastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_phiblast_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_phiblast_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_phiblast_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastx_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastp_007.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastp_006.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastp_005.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastp_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastp_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastp_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastn_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastn_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2228_tblastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2228_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_013.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_012.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_011.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_010.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_009.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_008.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_007.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_006.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_005.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/mirna.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/mirna.tab -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/BioSQL/cor6_6.db -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/BioSQL/biosqldb-sqlite.sql -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/BioSQL/biosqldb-pg.sql -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/BioSQL/biosqldb-mysql.sql -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/BioSQL creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/BWA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/BWA/human_g1k_v37_truncated.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/BWA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/BWA/HNSCC1_2_truncated.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/BWA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/BWA/HNSCC1_1_truncated.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/BWA creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Affy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Affy/affy_v4_example.CEL -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Affy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Affy/affy_v3_example.CEL -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Affy creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Ace copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Ace/seq.cap.ace -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Ace copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Ace/contig1.ace -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Ace copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Ace/consed_sample.ace -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Ace creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Abi/test_data -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Abi/test.fsa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Abi/no_smpl1.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Abi/fake.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Abi/empty.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Abi/A6_1-DB3.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Abi/3730.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Abi/3100.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Abi/310.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/.flake8 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/.coveragerc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_appendix.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_contributing.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_advanced.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_testing.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_cookbook.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_phenotype.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_kegg.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_graphics.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_learning.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_cluster.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_motifs.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_phylo.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_popgen.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_pdb.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_uniprot.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_entrez.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_searchio.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_blast.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_align.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_seqio.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_seq_annot.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_seq_objects.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_quick_start.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_introduction.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_uniprot.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_testing.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_seqio.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_seq_objects.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_seq_annot.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_searchio.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_quick_start.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_popgen.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_phylo.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_phenotype.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_pdb.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_motifs.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_learning.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_kegg.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_introduction.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_graphics.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_entrez.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_cookbook.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_contributing.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_cluster.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_blast.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_appendix.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_align.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_advanced.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/www_blast.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/swissprot.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/simple.dnd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/protein.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/opuntia.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/opuntia.dnd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/opuntia.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/nmr copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/nmr/simplepredict.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/nmr copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/nmr/noed.xpk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/nmr copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/my_blat.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/my_blast.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/make_subsmat.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/m_cold.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/ls_orchid.gbk.gz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/ls_orchid.gbk.bz2 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/ls_orchid.gbk.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/ls_orchid.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/ls_orchid.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/getgene.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/fasta_iterator.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/fasta_dictionary.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/ec_5.4.2.2.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/clustal_run.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/beta.faa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/alpha.faa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/Proux_et_al_2002_Figure_6.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/Plates.csv -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/PF05371_seed.sth -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/ACT_example.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/.flake8 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.t_coffee creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.t_coffee/plugins creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.t_coffee/plugins/linux creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.t_coffee/methods creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.t_coffee/mcoffee creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.t_coffee/cache creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.cache creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.cache/matplotlib creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.cache/matplotlib/tex.cache copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/home/.cache/matplotlib/fontlist-v300.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.cache/matplotlib creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.config creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.config/matplotlib creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.config/biopython creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.config/biopython/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.config/biopython/Bio/Entrez creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.config/biopython/Bio/Entrez/XSDs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.config/biopython/Bio/Entrez/DTDs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL/__pycache__/DBUtils.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL/__pycache__/Loader.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL/__pycache__/BioSeq.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL/__pycache__/BioSeqDatabase.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL/BioSeq.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL/BioSeqDatabase.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL/DBUtils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL/Loader.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/MaxEntropy.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/triefind.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/kNN.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/pairwise2.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/NaiveBayes.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/MarkovModel.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/LogisticRegression.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/bgzf.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/_utils.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/SeqFeature.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/Seq.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/SeqRecord.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/File.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/trie.cpython-37m-aarch64-linux-gnu.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/cpairwise2.cpython-37m-aarch64-linux-gnu.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/triemodule.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/trie.h -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/trie.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/cpairwise2module.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/phenotype/__pycache__/pm_fitting.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/phenotype/__pycache__/phen_micro.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/phenotype/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/phenotype/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/phenotype/phen_micro.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/phenotype/pm_fitting.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree/__pycache__/KDTree.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree/_CKDTree.cpython-37m-aarch64-linux-gnu.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree/Neighbor.h -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree/KDTreemodule.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree/KDTree.h -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree/KDTree.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree/KDTree.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Cluster creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Cluster/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Cluster/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster/_cluster.cpython-37m-aarch64-linux-gnu.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster/clustermodule.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster/cluster.h -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster/cluster.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Cluster creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Affy creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Affy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Affy/__pycache__/CelFile.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Affy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Affy/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Affy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Affy/CelFile.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Affy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Affy/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Affy creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/_py3k creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/_py3k/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/_py3k/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/_py3k/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/_py3k/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/_py3k creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Wise creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Wise/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Wise/__pycache__/psw.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Wise/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Wise/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Wise/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Wise/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Wise/dnal.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Wise/psw.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Wise creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniProt creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniProt/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniProt/__pycache__/GOA.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniProt/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniProt/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniProt/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniProt/GOA.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniProt/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniProt creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniGene creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniGene/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniGene/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniGene/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniGene/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniGene creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/Consensus.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/TreeConstruction.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/_utils.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/CDAO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/CDAOIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/_cdao_owl.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/NeXML.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/NeXMLIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/PhyloXML.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/PhyloXMLIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/NexusIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/Newick.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/NewickIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/BaseTree.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/_io.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/__pycache__/_parse_yn00.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/__pycache__/yn00.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/__pycache__/_parse_codeml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/__pycache__/codeml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/__pycache__/_parse_baseml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/__pycache__/_paml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/__pycache__/baseml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/__pycache__/chi2.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/_paml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/_parse_baseml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/_parse_codeml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/_parse_yn00.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/baseml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/chi2.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/codeml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/yn00.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications/__pycache__/_Fasttree.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications/__pycache__/_Raxml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications/__pycache__/_Phyml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications/_Fasttree.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications/_Phyml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications/_Raxml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/BaseTree.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/CDAO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/CDAOIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Consensus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/NeXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/NeXMLIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Newick.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/NewickIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/NexusIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PhyloXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PhyloXMLIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/TreeConstruction.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/_cdao_owl.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/_io.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/_utils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/TogoWS copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/TogoWS/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/TogoWS creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SwissProt creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SwissProt/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SwissProt/__pycache__/KeyWList.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SwissProt/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SwissProt/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SwissProt/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SwissProt/KeyWList.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SwissProt/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SwissProt creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SVDSuperimposer creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SVDSuperimposer/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SVDSuperimposer/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SVDSuperimposer creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SubsMat/__pycache__/MatrixInfo.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SubsMat/__pycache__/FreqTable.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SubsMat/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SubsMat/FreqTable.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SubsMat/MatrixInfo.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SubsMat/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Statistics creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Statistics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Statistics/__pycache__/lowess.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Statistics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Statistics/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Statistics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Statistics/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Statistics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Statistics/lowess.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Statistics creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/__pycache__/Phd.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/__pycache__/Ace.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/__pycache__ creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications/__pycache__/_samtools.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications/__pycache__/_bwa.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications/__pycache__/_Novoalign.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications/_Novoalign.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications/_bwa.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications/_samtools.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Ace.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Phd.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/__pycache__/MeltingTemp.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/__pycache__/lcc.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/__pycache__/IsoelectricPoint.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/__pycache__/ProtParamData.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/__pycache__/ProtParam.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/__pycache__/CodonUsageIndices.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/__pycache__/CodonUsage.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/__pycache__/CheckSum.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/CheckSum.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/CodonUsage.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/CodonUsageIndices.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/IsoelectricPoint.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/MeltingTemp.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/ProtParam.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/ProtParamData.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/lcc.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/_convert.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/UniprotIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/TabIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/SwissIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/SffIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/SeqXmlIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/PirIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/QualityIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/PhdIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/PdbIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/InsdcIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/IgIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/Interfaces.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/FastaIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/AceIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/AbiIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/AbiIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/AceIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/IgIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/InsdcIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/Interfaces.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/PdbIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/PhdIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/PirIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/QualityIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/SeqXmlIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/SffIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/SwissIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/TabIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/UniprotIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/_convert.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/__pycache__/FastaIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/__pycache__/BlatIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/__pycache__/_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/__pycache__/_utils.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/__pycache__ creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/InterproscanIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/InterproscanIO/__pycache__/interproscan_xml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/InterproscanIO/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/InterproscanIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/InterproscanIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/InterproscanIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_cigar.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_vulgar.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO/__pycache__/_base.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_text.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO/_base.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_text.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_tab.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_domtab.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/__pycache__/_base.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer2_text.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/_base.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO/__pycache__/blast_text.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO/__pycache__/blast_xml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO/__pycache__/blast_tab.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO/blast_tab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO/blast_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO/blast_xml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model/__pycache__/hsp.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model/__pycache__/hit.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model/__pycache__/_base.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model/__pycache__/query.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model/_base.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model/hit.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model/hsp.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model/query.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_legacy/__pycache__/ParserSupport.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_legacy/__pycache__/NCBIStandalone.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_legacy/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_legacy/NCBIStandalone.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_legacy/ParserSupport.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_legacy/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlatIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_utils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/__pycache__/Raf.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/__pycache__/Dom.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/__pycache__/Hie.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/__pycache__/Residues.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/__pycache__/Cla.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/__pycache__/Des.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/Cla.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/Des.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/Dom.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/Hie.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/Raf.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/Residues.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction/__pycache__/RanaConfig.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction/__pycache__/PrintFormat.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction/__pycache__/Restriction_Dictionary.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction/__pycache__/Restriction.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction/PrintFormat.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction/RanaConfig.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction/Restriction.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction/Restriction_Dictionary.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/__pycache__ creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop/__pycache__/FileParser.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop/Controller.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop/EasyController.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop/FileParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop/LargeFileParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop/Utils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/__pycache__ creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/Rep/__pycache__/Graph.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/Rep/__pycache__/MultiGraph.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/Rep/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/Rep/Graph.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/Rep/MultiGraph.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/Rep/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NMR creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NMR/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/NMR/__pycache__/xpktools.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NMR/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/NMR/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NMR/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/NMR/NOEtools.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NMR copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/NMR/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NMR copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/NMR/xpktools.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NMR creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/__pycache__/Nodes.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/__pycache__/Trees.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/__pycache__/StandardData.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/__pycache__/Nexus.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/cnexus.cpython-37m-aarch64-linux-gnu.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/cnexus.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/Nexus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/Nodes.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/StandardData.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/Trees.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/__pycache__/minimal.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/__pycache__/mast.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/__pycache__/alignace.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/__pycache__/thresholds.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/__pycache__/transfac.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/__pycache__/meme.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/__pycache__/matrix.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/_pwm.cpython-37m-aarch64-linux-gnu.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/_pwm.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/jaspar creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/jaspar/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/jaspar/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/jaspar/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/jaspar/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/jaspar copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/jaspar/db.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/jaspar creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/applications creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/applications/__pycache__/_xxmotif.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/applications/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/applications/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/applications/_xxmotif.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/alignace.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/mast.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/matrix.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/meme.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/minimal.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/thresholds.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/transfac.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Medline creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Medline/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Medline/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Medline/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Medline/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Medline creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Vector.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/NACCESS.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/NeighborSearch.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Dice.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/FragmentMapper.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/HSExposure.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/ResidueDepth.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/AbstractPropertyMap.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/DSSP.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/StructureAlignment.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Superimposer.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Selection.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/mmcifio.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/PDBIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Polypeptide.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/PDBList.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/MMCIF2Dict.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/MMCIFParser.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/parse_pdb_header.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/vectors.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Atom.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Residue.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Chain.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Model.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Entity.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Structure.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/StructureBuilder.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/PDBExceptions.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/PDBParser.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/kdtrees.cpython-37m-aarch64-linux-gnu.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/kdtrees.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/QCPSuperimposer creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/QCPSuperimposer/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-37m-aarch64-linux-gnu.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/QCPSuperimposer/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/AbstractPropertyMap.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Atom.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Chain.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/DSSP.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Dice.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Entity.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/FragmentMapper.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/HSExposure.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/MMCIF2Dict.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/MMCIFParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Model.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/NACCESS.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/NeighborSearch.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/PDBExceptions.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/PDBIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/PDBList.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/PDBParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/PSEA.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Polypeptide.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Residue.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/ResidueDepth.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Selection.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Structure.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/StructureAlignment.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/StructureBuilder.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Superimposer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Vector.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/mmcifio.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/parse_pdb_header.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/vectors.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/mmtf creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/mmtf/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/mmtf/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/mmtf/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/mmtf/DefaultParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/mmtf/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/mmtf creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/__pycache__/REST.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/__pycache__ creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/KGML/__pycache__/KGML_pathway.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/KGML/__pycache__/KGML_parser.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/KGML/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/KGML/KGML_parser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/KGML/KGML_pathway.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/KGML/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Map creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Map/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Map/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Map/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Map/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Map creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Gene creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Gene/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Gene/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Gene/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Gene/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Gene creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Enzyme creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Enzyme/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Enzyme/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Enzyme creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Compound creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Compound/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Compound/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Compound/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Compound/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Compound copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/REST.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM/__pycache__/Utilities.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM/__pycache__/DynamicProgramming.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM/__pycache__/Trainer.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM/__pycache__/MarkovModel.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM/DynamicProgramming.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM/MarkovModel.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM/Trainer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM/Utilities.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/__pycache__/KGML_vis.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/__pycache__/Distribution.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/__pycache__/DisplayRepresentation.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/__pycache__/BasicChromosome.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/__pycache__/Comparative.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/__pycache__/ColorSpiral.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/__pycache__ creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_CrossLink.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_Track.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_CircularDrawer.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_Graph.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_GraphSet.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_Colors.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_Feature.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_FeatureSet.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_AbstractDrawer.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_LinearDrawer.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_Diagram.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_Colors.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_Feature.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_Graph.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_Track.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/BasicChromosome.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/ColorSpiral.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/Comparative.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/DisplayRepresentation.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/Distribution.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/KGML_vis.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Geo creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Geo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Geo/__pycache__/Record.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Geo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Geo/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Geo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Geo/Record.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Geo/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Geo creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank/__pycache__/Record.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank/__pycache__/Scanner.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank/__pycache__/utils.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank/Record.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank/Scanner.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank/utils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/FSSP/__pycache__/FSSPTools.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/FSSP/__pycache__/fssp_rec.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/FSSP/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/FSSP/FSSPTools.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/FSSP/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/FSSP/fssp_rec.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/__pycache__/Prosite.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/__pycache__/Prodoc.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/__pycache__/cellosaurus.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/__pycache__/Enzyme.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/Enzyme.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/Prodoc.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/Prosite.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/ScanProsite.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/cellosaurus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/__pycache__/Parser.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/__pycache__ creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/XSDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/XSDs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/xmlspecchars.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/taxon.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/section.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/references.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pmc-1.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/phrase.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/para.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/notat.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/modules.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/mmlextra.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/mmlalias.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/mathmlsetup.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/mathml3.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/mathml2.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/math.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/list.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/link.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/journalmeta.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isotech.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isopub.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isonum.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isomscr.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isomopf.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isomfrk.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isolat2.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isolat1.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isogrk4.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isogrk3.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isogrk2.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isogrk1.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isodia.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isocyr2.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isocyr1.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isobox.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isoamsr.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isoamso.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isoamsn.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isoamsc.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isoamsb.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isoamsa.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/htmltable.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/format.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/esummary-v1.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/esearch.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/elink_020122.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/einfo.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/egquery.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/eSpell.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/ePost_020511.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/eLink_101123.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/eLink_090910.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/display.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/default-mixes.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/default-classes.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/common.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/chars.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/backmatter.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/articlemeta.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/archivecustom-models.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/archivearticle.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/SP_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/PRF_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/PIR_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/PDB_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/OMSSA.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NSE.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NSE.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_all.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Project.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/MMDB_Features.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/MMDB.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/MMDB.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/HomoloGene.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/GenBank_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/EMBL_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/Parser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss/__pycache__/Primer3.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss/__pycache__/PrimerSearch.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss/__pycache__/Applications.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss/Applications.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss/Primer3.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss/PrimerSearch.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data/__pycache__/SCOPData.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data/__pycache__/CodonTable.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data/__pycache__/IUPACData.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data/CodonTable.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data/IUPACData.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data/SCOPData.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Crystal creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Crystal/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Crystal/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Crystal/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Crystal/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Crystal creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Compass creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Compass/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Compass/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Compass/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Compass/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Compass creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign/__pycache__/chisq.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign/__pycache__/codonalignment.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign/__pycache__/codonalphabet.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign/__pycache__/codonseq.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign/chisq.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign/codonalignment.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign/codonalphabet.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign/codonseq.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/CAPS creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/CAPS/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/CAPS/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/CAPS/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/CAPS/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/CAPS creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/__pycache__/NCBIWWW.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/__pycache__/Applications.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/__pycache__/NCBIXML.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/__pycache__/Record.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/Applications.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/NCBIWWW.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/NCBIXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/ParseBlastTable.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/Record.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Application creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Application/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Application/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Application/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Application/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Application creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Alphabet/__pycache__/Reduced.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Alphabet/__pycache__/IUPAC.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Alphabet/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Alphabet/IUPAC.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Alphabet/Reduced.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Alphabet/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__pycache__/MauveIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__pycache__/MafIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__pycache__/FastaIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__pycache__/EmbossIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__pycache__/PhylipIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__pycache__/NexusIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__pycache__/ClustalIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__pycache__/Interfaces.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__pycache__/StockholmIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/ClustalIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/EmbossIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/Interfaces.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/MafIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/MauveIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/NexusIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/PhylipIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/StockholmIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/__pycache__/AlignInfo.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/_aligners.cpython-37m-aarch64-linux-gnu.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/_aligners.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__pycache__/_MSAProbs.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__pycache__/_TCoffee.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__pycache__/_Probcons.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__pycache__/_Dialign.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__pycache__/_Mafft.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__pycache__/_Prank.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__pycache__/_ClustalOmega.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__pycache__/_Clustalw.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__pycache__/_Muscle.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/_ClustalOmega.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/_Clustalw.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/_Dialign.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/_MSAProbs.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/_Mafft.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/_Muscle.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/_Prank.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/_Probcons.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/_TCoffee.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/AlignInfo.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/File.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/LogisticRegression.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/MarkovModel.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/MaxEntropy.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/NaiveBayes.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Seq.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqFeature.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqRecord.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/_utils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/bgzf.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/kNN.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/pairwise2.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/triefind.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_GenomeDiagram.py to test_GenomeDiagram.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_trie.py to test_trie.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_translate.py to test_translate.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_seq.py to test_seq.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_samtools_tool.py to test_samtools_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_psw.py to test_psw.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_prosite2.py to test_prosite2.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_prosite1.py to test_prosite1.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_prodoc.py to test_prodoc.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_phenotype_fit.py to test_phenotype_fit.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_phenotype.py to test_phenotype.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_pairwise_aligner.py to test_pairwise_aligner.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_pairwise2.py to test_pairwise2.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_motifs_online.py to test_motifs_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_motifs.py to test_motifs.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_mmtf_online.py to test_mmtf_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_mmtf.py to test_mmtf.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_lowess.py to test_lowess.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_kNN.py to test_kNN.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_geo.py to test_geo.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_codonalign.py to test_codonalign.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_cellosaurus.py to test_cellosaurus.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_bgzf.py to test_bgzf.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_align.py to test_align.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Wise.py to test_Wise.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Uniprot.py to test_Uniprot.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_UniGene.py to test_UniGene.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Tutorial.py to test_Tutorial.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_TreeConstruction.py to test_TreeConstruction.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_TogoWS.py to test_TogoWS.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_TCoffee_tool.py to test_TCoffee_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SwissProt.py to test_SwissProt.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SubsMat.py to test_SubsMat.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SffIO.py to test_SffIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Seq_objs.py to test_Seq_objs.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqUtils.py to test_SeqUtils.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqRecord.py to test_SeqRecord.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_write.py to test_SeqIO_write.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_online.py to test_SeqIO_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_index.py to test_SeqIO_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_features.py to test_SeqIO_features.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_convert.py to test_SeqIO_convert.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_SeqXML.py to test_SeqIO_SeqXML.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_QualityIO.py to test_SeqIO_QualityIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_PdbIO.py to test_SeqIO_PdbIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_Insdc.py to test_SeqIO_Insdc.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_FastaIO.py to test_SeqIO_FastaIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_AbiIO.py to test_SeqIO_AbiIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO.py to test_SeqIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqFeature.py to test_SeqFeature.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_write.py to test_SearchIO_write.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_model.py to test_SearchIO_model.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_legacy.py to test_SearchIO_legacy.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_interproscan_xml.py to test_SearchIO_interproscan_xml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_hmmer3_text_index.py to test_SearchIO_hmmer3_text_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_hmmer3_text.py to test_SearchIO_hmmer3_text.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_hmmer3_tab_index.py to test_SearchIO_hmmer3_tab_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_hmmer3_tab.py to test_SearchIO_hmmer3_tab.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_hmmer3_domtab_index.py to test_SearchIO_hmmer3_domtab_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_hmmer3_domtab.py to test_SearchIO_hmmer3_domtab.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_hmmer2_text_index.py to test_SearchIO_hmmer2_text_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_hmmer2_text.py to test_SearchIO_hmmer2_text.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_fasta_m10_index.py to test_SearchIO_fasta_m10_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_fasta_m10.py to test_SearchIO_fasta_m10.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_exonerate_vulgar_index.py to test_SearchIO_exonerate_vulgar_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_exonerate_text_index.py to test_SearchIO_exonerate_text_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_exonerate.py to test_SearchIO_exonerate.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_blat_psl_index.py to test_SearchIO_blat_psl_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_blat_psl.py to test_SearchIO_blat_psl.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_blast_xml_index.py to test_SearchIO_blast_xml_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_blast_xml.py to test_SearchIO_blast_xml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_blast_text.py to test_SearchIO_blast_text.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_blast_tab_index.py to test_SearchIO_blast_tab_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_blast_tab.py to test_SearchIO_blast_tab.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SVDSuperimposer.py to test_SVDSuperimposer.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SCOP_online.py to test_SCOP_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SCOP_Scop.py to test_SCOP_Scop.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SCOP_Residues.py to test_SCOP_Residues.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SCOP_Raf.py to test_SCOP_Raf.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SCOP_Hie.py to test_SCOP_Hie.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SCOP_Dom.py to test_SCOP_Dom.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SCOP_Des.py to test_SCOP_Des.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SCOP_Cla.py to test_SCOP_Cla.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SCOP_Astral.py to test_SCOP_Astral.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Restriction.py to test_Restriction.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_RCSBFormats.py to test_RCSBFormats.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_QCPSuperimposer.py to test_QCPSuperimposer.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_ProtParam.py to test_ProtParam.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Probcons_tool.py to test_Probcons_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Prank_tool.py to test_Prank_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PopGen_GenePop_nodepend.py to test_PopGen_GenePop_nodepend.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Phylo_networkx.py to test_Phylo_networkx.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Phylo_matplotlib.py to test_Phylo_matplotlib.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Phylo_NeXML.py to test_Phylo_NeXML.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Phylo_CDAO.py to test_Phylo_CDAO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PhyloXML.py to test_PhyloXML.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Phylo.py to test_Phylo.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Phd.py to test_Phd.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Pathway.py to test_Pathway.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDB_vectors.py to test_PDB_vectors.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDB_Superimposer.py to test_PDB_Superimposer.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDB_StructureAlignment.py to test_PDB_StructureAlignment.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDB_ResidueDepth.py to test_PDB_ResidueDepth.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDB_Polypetide.py to test_PDB_Polypetide.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDB_MMCIFParser.py to test_PDB_MMCIFParser.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDB_MMCIF2Dict.py to test_PDB_MMCIF2Dict.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDB_KDTree.py to test_PDB_KDTree.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDB_FragmentMapper.py to test_PDB_FragmentMapper.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDBList.py to test_PDBList.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDB.py to test_PDB.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PAML_yn00.py to test_PAML_yn00.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PAML_codeml.py to test_PAML_codeml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PAML_baseml.py to test_PAML_baseml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Nexus.py to test_Nexus.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_NaiveBayes.py to test_NaiveBayes.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_NCBI_qblast.py to test_NCBI_qblast.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_NCBI_BLAST_tools.py to test_NCBI_BLAST_tools.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_NCBIXML.py to test_NCBIXML.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_NCBITextParser.py to test_NCBITextParser.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Muscle_tool.py to test_Muscle_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Medline.py to test_Medline.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_MarkovModel.py to test_MarkovModel.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Mafft_tool.py to test_Mafft_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_MafIO_index.py to test_MafIO_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_LogisticRegression.py to test_LogisticRegression.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Location.py to test_Location.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_KeyWList.py to test_KeyWList.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_KGML_nographics.py to test_KGML_nographics.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_KGML_graphics_online.py to test_KGML_graphics_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_KGML_graphics.py to test_KGML_graphics.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_KEGG_online.py to test_KEGG_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_KEGG.py to test_KEGG.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_KDTree.py to test_KDTree.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_HMMGeneral.py to test_HMMGeneral.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_HMMCasino.py to test_HMMCasino.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_GraphicsGeneral.py to test_GraphicsGeneral.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_GraphicsDistribution.py to test_GraphicsDistribution.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_GraphicsChromosome.py to test_GraphicsChromosome.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_GraphicsBitmaps.py to test_GraphicsBitmaps.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_GenBank_unittest.py to test_GenBank_unittest.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_GenBank.py to test_GenBank.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_File.py to test_File.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Fasttree_tool.py to test_Fasttree_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_FSSP.py to test_FSSP.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_ExPASy.py to test_ExPASy.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Enzyme.py to test_Enzyme.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Entrez_parser.py to test_Entrez_parser.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Entrez_online.py to test_Entrez_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Entrez.py to test_Entrez.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_EmbossPrimer.py to test_EmbossPrimer.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Emboss.py to test_Emboss.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_EMBL_unittest.py to test_EMBL_unittest.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Dialign_tool.py to test_Dialign_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_DSSP_tool.py to test_DSSP_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Crystal.py to test_Crystal.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Consensus.py to test_Consensus.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Compass.py to test_Compass.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_ColorSpiral.py to test_ColorSpiral.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_CodonUsage.py to test_CodonUsage.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_CodonTable.py to test_CodonTable.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Cluster.py to test_Cluster.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Clustalw_tool.py to test_Clustalw_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_ClustalOmega_tool.py to test_ClustalOmega_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Chi2.py to test_Chi2.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_CelFile.py to test_CelFile.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_CAPS.py to test_CAPS.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_BioSQL_sqlite3_online.py to test_BioSQL_sqlite3_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_BioSQL_sqlite3.py to test_BioSQL_sqlite3.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_BioSQL_psycopg2_online.py to test_BioSQL_psycopg2_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_BioSQL_mysql_connector_online.py to test_BioSQL_mysql_connector_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_BioSQL_mysql_connector.py to test_BioSQL_mysql_connector.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_BioSQL_MySQLdb_online.py to test_BioSQL_MySQLdb_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Application.py to test_Application.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_AlignInfo.py to test_AlignInfo.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_AlignIO_convert.py to test_AlignIO_convert.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_AlignIO_PhylipIO.py to test_AlignIO_PhylipIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_AlignIO_MauveIO.py to test_AlignIO_MauveIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_AlignIO_FastaIO.py to test_AlignIO_FastaIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_AlignIO_EmbossIO.py to test_AlignIO_EmbossIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_AlignIO_ClustalIO.py to test_AlignIO_ClustalIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_AlignIO.py to test_AlignIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Affy.py to test_Affy.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Ace.py to test_Ace.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/seq_tests_common.py to seq_tests_common.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/search_tests_common.py to search_tests_common.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/run_tests.py to run_tests.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/requires_wise.py to requires_wise.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/requires_internet.py to requires_internet.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/common_BioSQL_online.py to common_BioSQL_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/common_BioSQL.py to common_BioSQL.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/gen_results.py to gen_results.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/www_blast.py to www_blast.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/swissprot.py to swissprot.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/nmr/simplepredict.py to simplepredict.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/make_subsmat.py to make_subsmat.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/getgene.py to getgene.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/fasta_iterator.py to fasta_iterator.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/fasta_dictionary.py to fasta_dictionary.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/clustal_run.py to clustal_run.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/Proux_et_al_2002_Figure_6.py to Proux_et_al_2002_Figure_6.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/ACT_example.py to ACT_example.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/BioSeq.py to BioSeq.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/DBUtils.py to DBUtils.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/Loader.py to Loader.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype/phen_micro.py to phen_micro.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype/pm_fitting.py to pm_fitting.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree/KDTree.py to KDTree.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Cluster/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Affy/CelFile.py to CelFile.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Affy/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/_py3k/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Wise/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Wise/dnal.py to dnal.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Wise/psw.py to psw.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniProt/GOA.py to GOA.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniProt/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniGene/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/_paml.py to _paml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/baseml.py to baseml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/chi2.py to chi2.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/codeml.py to codeml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/yn00.py to yn00.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/BaseTree.py to BaseTree.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/CDAO.py to CDAO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/CDAOIO.py to CDAOIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Consensus.py to Consensus.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/NeXML.py to NeXML.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Newick.py to Newick.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/NewickIO.py to NewickIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/NexusIO.py to NexusIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PhyloXML.py to PhyloXML.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/_io.py to _io.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/_utils.py to _utils.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/TogoWS/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SwissProt/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat/FreqTable.py to FreqTable.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat/MatrixInfo.py to MatrixInfo.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Statistics/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Statistics/lowess.py to lowess.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications/_bwa.py to _bwa.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications/_samtools.py to _samtools.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Ace.py to Ace.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Phd.py to Phd.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/lcc.py to lcc.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/AbiIO.py to AbiIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/AceIO.py to AceIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/IgIO.py to IgIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/PdbIO.py to PdbIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/PirIO.py to PirIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/SffIO.py to SffIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/TabIO.py to TabIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/_convert.py to _convert.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/_index.py to _index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/InterproscanIO/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py to interproscan_xml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/_base.py to _base.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py to exonerate_text.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py to exonerate_vulgar.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/_base.py to _base.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py to hmmer3_domtab.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py to hmmer3_tab.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py to hmmer3_text.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO/blast_text.py to blast_text.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/_base.py to _base.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/hit.py to hit.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/hsp.py to hsp.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/query.py to query.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy/NCBIStandalone.py to NCBIStandalone.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy/ParserSupport.py to ParserSupport.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlatIO.py to BlatIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/FastaIO.py to FastaIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_index.py to _index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_utils.py to _utils.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/Cla.py to Cla.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/Des.py to Des.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/Dom.py to Dom.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/Hie.py to Hie.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/Raf.py to Raf.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/Residues.py to Residues.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/RanaConfig.py to RanaConfig.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/Restriction.py to Restriction.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop/Utils.py to Utils.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NMR/NOEtools.py to NOEtools.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NMR/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NMR/xpktools.py to xpktools.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/Nexus.py to Nexus.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/Nodes.py to Nodes.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/StandardData.py to StandardData.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/Trees.py to Trees.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/jaspar/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/jaspar/db.py to db.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/applications/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/alignace.py to alignace.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/mast.py to mast.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/matrix.py to matrix.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/meme.py to meme.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/minimal.py to minimal.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/thresholds.py to thresholds.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/transfac.py to transfac.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Medline/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/QCPSuperimposer/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Atom.py to Atom.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Chain.py to Chain.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/DSSP.py to DSSP.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Dice.py to Dice.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Entity.py to Entity.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/HSExposure.py to HSExposure.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Model.py to Model.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/NACCESS.py to NACCESS.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/PDBIO.py to PDBIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/PDBList.py to PDBList.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/PDBParser.py to PDBParser.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/PSEA.py to PSEA.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Residue.py to Residue.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Selection.py to Selection.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Structure.py to Structure.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Superimposer.py to Superimposer.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Vector.py to Vector.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/mmcifio.py to mmcifio.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/vectors.py to vectors.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/mmtf/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Map/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Gene/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Enzyme/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Compound/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/REST.py to REST.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/Trainer.py to Trainer.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/Utilities.py to Utilities.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/Comparative.py to Comparative.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/Distribution.py to Distribution.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/KGML_vis.py to KGML_vis.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Geo/Record.py to Record.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Geo/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank/Record.py to Record.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank/Scanner.py to Scanner.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank/utils.py to utils.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP/FSSPTools.py to FSSPTools.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP/fssp_rec.py to fssp_rec.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/Prosite.py to Prosite.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/Parser.py to Parser.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss/Applications.py to Applications.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss/Primer3.py to Primer3.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data/CodonTable.py to CodonTable.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data/IUPACData.py to IUPACData.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data/SCOPData.py to SCOPData.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Crystal/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Compass/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/chisq.py to chisq.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/codonalignment.py to codonalignment.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/codonalphabet.py to codonalphabet.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/codonseq.py to codonseq.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/CAPS/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/Applications.py to Applications.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/Record.py to Record.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Application/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet/IUPAC.py to IUPAC.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet/Reduced.py to Reduced.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/MafIO.py to MafIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/MauveIO.py to MauveIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/File.py to File.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Index.py to Index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/LogisticRegression.py to LogisticRegression.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/MarkovModel.py to MarkovModel.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NaiveBayes.py to NaiveBayes.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Seq.py to Seq.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqFeature.py to SeqFeature.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqRecord.py to SeqRecord.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/_utils.py to _utils.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/bgzf.py to bgzf.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/kNN.py to kNN.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/pairwise2.py to pairwise2.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/triefind.py to triefind.cpython-37.pyc running install_egg_info Copying biopython.egg-info to /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/biopython-1.73.egg-info Skipping SOURCES.txt running install_scripts dh_numpy -ppython-biopython (grep -a -s -v python:Depends debian/python-biopython.substvars; echo "python:Depends=python-numpy (>= 1:1.16.0~rc1), python-numpy-abi9") > debian/python-biopython.substvars.new mv debian/python-biopython.substvars.new debian/python-biopython.substvars dh_numpy3 -ppython3-biopython (grep -a -s -v python3:Depends debian/python3-biopython.substvars; echo "python3:Depends=python3-numpy (>= 1:1.16.0~rc1), python3-numpy-abi9") > debian/python3-biopython.substvars.new mv debian/python3-biopython.substvars.new debian/python3-biopython.substvars make[1]: Leaving directory '/build/python-biopython-1.73+dfsg' dh_install -O--buildsystem=pybuild install -d debian/python-biopython//usr/lib/python2.7/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python2.7/dist-packages/Bio debian/tmp/usr/lib/python2.7/dist-packages/biopython-1.73.egg-info debian/python-biopython//usr/lib/python2.7/dist-packages/ install -d debian/.debhelper/generated/python-biopython install -d debian/python3-biopython//usr/lib/python3.7/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.7/dist-packages/Bio debian/tmp/usr/lib/python3.7/dist-packages/biopython-1.73.egg-info debian/python3-biopython//usr/lib/python3.7/dist-packages/ install -d debian/.debhelper/generated/python3-biopython install -d debian/.debhelper/generated/python-biopython-doc install -d debian/python-biopython-sql//usr/lib/python2.7/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python2.7/dist-packages/BioSQL debian/python-biopython-sql//usr/lib/python2.7/dist-packages/ install -d debian/.debhelper/generated/python-biopython-sql install -d debian/python3-biopython-sql//usr/lib/python3.7/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.7/dist-packages/BioSQL debian/python3-biopython-sql//usr/lib/python3.7/dist-packages/ install -d debian/.debhelper/generated/python3-biopython-sql rm -f debian/python-biopython-doc.debhelper.log debian/python-biopython-sql.debhelper.log debian/python-biopython.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/python-biopython-1.73+dfsg' dh_installdocs -i install -d debian/python-biopython-doc/usr/share/doc/python-biopython-doc install -d debian/python-biopython-doc/usr/share/doc/python-biopython cd './Doc/..' && find 'Doc' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/python-biopython-1.73+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython cp --reflink=auto -a ./debian/README.test debian/python-biopython-doc/usr/share/doc/python-biopython cp --reflink=auto -a ./debian/tests/run-unit-test debian/python-biopython-doc/usr/share/doc/python-biopython cd './debian/Tests_fixme/..' && find 'Tests_fixme' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/python-biopython-1.73+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython chown -R 0:0 debian/python-biopython-doc/usr/share/doc chmod -R u\+rw,go=rX debian/python-biopython-doc/usr/share/doc install -p -m0644 debian/copyright debian/python-biopython-doc/usr/share/doc/python-biopython-doc/copyright install -d debian/python-biopython-doc/usr/share/doc-base/ install -p -m0644 debian/python-biopython-doc.doc-base debian/python-biopython-doc/usr/share/doc-base/biopython-tutorial install -d debian/python-biopython-sql/usr/share/doc/python-biopython-sql install -p -m0644 debian/copyright debian/python-biopython-sql/usr/share/doc/python-biopython-sql/copyright install -d debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql install -p -m0644 debian/copyright debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql/copyright find debian -name __pycache__ -type d | xargs rm -rf find debian -name example.fastq.gz debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality/example.fastq.gz debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality/example.fastq.gz # dh_installdocs seems to refuse copying zero length files (for instance Tests/Blast/tab_2226_tblastn_002.txt) but these are needed for the tests as well cp -a debian/tmp_tests/* /build/python-biopython-1.73+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/ find debian -name .cvsignore -delete # no idea why Doc dir ends up in /usr/share/doc/python-biopython since biopython 1.71 - just move it into right place if [ -d debian/python-biopython-doc/usr/share/doc/python-biopython/Doc ] ; then \ mv debian/python-biopython-doc/usr/share/doc/python-biopython/Doc debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc ; \ fi cd debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc && make clean make[2]: Entering directory '/build/python-biopython-1.73+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc' make -C install make[3]: Entering directory '/build/python-biopython-1.73+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/install' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/python-biopython-1.73+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/install' ( for f in install ; do make clean -C $f ; done ) make[3]: Entering directory '/build/python-biopython-1.73+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/install' rm -f Installation.aux rm -f Installation.log rm -f Installation.out rm -f Installation.toc rm -f Installation.haux rm -f Installation.htoc make[3]: Leaving directory '/build/python-biopython-1.73+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/install' rm -f Tutorial.aux rm -f Tutorial.toc rm -f Tutorial.log rm -f Tutorial.out rm -f Tutorial.haux rm -f Tutorial.htoc rm -f biopdb_faq.aux rm -f biopdb_faq.log rm -f biopdb_faq.out rm -f Tutorial/*.aux make[2]: Leaving directory '/build/python-biopython-1.73+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc' find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name Makefile -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.aux" -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.lyx" -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -type d -empty -delete make[1]: Leaving directory '/build/python-biopython-1.73+dfsg' dh_installdocs -O--buildsystem=pybuild -Npython-biopython-doc -Npython-biopython-sql -Npython3-biopython-sql install -d debian/python-biopython/usr/share/doc/python-biopython cp --reflink=auto -a ./CONTRIB.rst debian/python-biopython/usr/share/doc/python-biopython cp --reflink=auto -a ./CONTRIBUTING.rst debian/python-biopython/usr/share/doc/python-biopython cp --reflink=auto -a ./DEPRECATED.rst debian/python-biopython/usr/share/doc/python-biopython cp --reflink=auto -a ./NEWS.rst debian/python-biopython/usr/share/doc/python-biopython chown -R 0:0 debian/python-biopython/usr/share/doc chmod -R u\+rw,go=rX debian/python-biopython/usr/share/doc install -p -m0644 debian/README.Debian debian/python-biopython/usr/share/doc/python-biopython/README.Debian install -p -m0644 debian/copyright debian/python-biopython/usr/share/doc/python-biopython/copyright install -d debian/python3-biopython/usr/share/doc/python3-biopython install -p -m0644 debian/copyright debian/python3-biopython/usr/share/doc/python3-biopython/copyright dh_installchangelogs -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/python3-biopython/usr/share/doc/python3-biopython/changelog.Debian install -p -m0644 debian/changelog debian/python-biopython/usr/share/doc/python-biopython/changelog.Debian install -p -m0644 debian/changelog debian/python-biopython-doc/usr/share/doc/python-biopython-doc/changelog.Debian install -p -m0644 debian/changelog debian/python-biopython-sql/usr/share/doc/python-biopython-sql/changelog.Debian install -p -m0644 debian/changelog debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql/changelog.Debian dh_python2 -O--buildsystem=pybuild D: dh_python2 dh_python2:393: version: 3.20190308 D: dh_python2 dh_python2:394: argv: ['/usr/share/dh-python/dh_python2', '-O--buildsystem=pybuild'] D: dh_python2 dh_python2:395: options: {'guess_versions': True, 'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'namespaces': None, 'clean_pycentral': False, 'shebang': None, 'ignore_shebangs': False, 'ignore_namespace': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python2 dh_python2:396: args: [] D: dh_python2 dh_python2:398: supported Python versions: 2.7 (default=2.7) D: dh_python2 debhelper:107: skipping package: python3-biopython D: dh_python2 debhelper:107: skipping package: python3-biopython-sql D: dh_python2 debhelper:153: source=python-biopython, binary packages=['python-biopython', 'python-biopython-doc', 'python-biopython-sql'] D: dh_python2 dh_python2:415: processing package python-biopython... D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/File.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Index.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/LogisticRegression.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/MarkovModel.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/MaxEntropy.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/NaiveBayes.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Seq.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqFeature.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqRecord.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/_utils.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/bgzf.pyc D: dh_python2 tools:232: invoking: /usr/bin/python2.7 -c 'import sysconfig as s;print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' I: dh_python2 fs:343: renaming cpairwise2.so to cpairwise2.aarch64-linux-gnu.so D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/kNN.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/pairwise2.pyc I: dh_python2 fs:343: renaming trie.so to trie.aarch64-linux-gnu.so D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/triefind.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/AlignInfo.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/__init__.pyc I: dh_python2 fs:343: renaming _aligners.so to _aligners.aarch64-linux-gnu.so D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_ClustalOmega.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Clustalw.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Dialign.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_MSAProbs.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Mafft.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Muscle.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Prank.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Probcons.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_TCoffee.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/Applications/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/AlignIO/ClustalIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/AlignIO/EmbossIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/AlignIO/FastaIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/AlignIO/Interfaces.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/AlignIO/MafIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/AlignIO/MauveIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/AlignIO/NexusIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/AlignIO/PhylipIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/AlignIO/StockholmIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/AlignIO/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Alphabet/IUPAC.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Alphabet/Reduced.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Alphabet/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Application/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Blast/Applications.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Blast/NCBIWWW.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Blast/NCBIXML.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Blast/ParseBlastTable.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Blast/Record.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Blast/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/CAPS/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/codonalign/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/codonalign/chisq.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/codonalign/codonalignment.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/codonalign/codonalphabet.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/codonalign/codonseq.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Compass/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Crystal/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Data/CodonTable.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Data/IUPACData.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Data/SCOPData.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Data/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Emboss/Applications.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Emboss/Primer3.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Emboss/PrimerSearch.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Emboss/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Entrez/Parser.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Entrez/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/ExPASy/Enzyme.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/ExPASy/Prodoc.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/ExPASy/Prosite.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/ExPASy/ScanProsite.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/ExPASy/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/ExPASy/cellosaurus.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/FSSP/FSSPTools.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/FSSP/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/FSSP/fssp_rec.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/GenBank/Record.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/GenBank/Scanner.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/GenBank/__init__.pyc D: dh_python2 fs:209: removing unwanted: 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debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/_convert.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/_index.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqUtils/CheckSum.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqUtils/CodonUsage.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqUtils/CodonUsageIndices.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqUtils/IsoelectricPoint.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqUtils/MeltingTemp.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqUtils/ProtParam.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqUtils/ProtParamData.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqUtils/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqUtils/lcc.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Sequencing/Ace.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Sequencing/Phd.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Sequencing/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications/_Novoalign.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications/_bwa.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications/_samtools.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Statistics/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Statistics/lowess.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SubsMat/FreqTable.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SubsMat/MatrixInfo.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SubsMat/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SVDSuperimposer/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SwissProt/KeyWList.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SwissProt/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/TogoWS/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/BaseTree.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/CDAO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/CDAOIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/Consensus.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/NeXML.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/NeXMLIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/Newick.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/NewickIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/NexusIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/PhyloXML.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/PhyloXMLIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/TreeConstruction.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/_cdao_owl.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/_io.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/_utils.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications/_Fasttree.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications/_Phyml.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications/_Raxml.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/_paml.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/_parse_baseml.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/_parse_codeml.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/_parse_yn00.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/baseml.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/chi2.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/codeml.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/yn00.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/UniGene/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/UniProt/GOA.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/UniProt/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Wise/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Wise/dnal.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Wise/psw.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/_py3k/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Affy/CelFile.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Affy/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Cluster/__init__.pyc I: dh_python2 fs:343: renaming _cluster.so to _cluster.aarch64-linux-gnu.so D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/KDTree/KDTree.pyc I: dh_python2 fs:343: renaming _CKDTree.so to _CKDTree.aarch64-linux-gnu.so D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/KDTree/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/phenotype/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/phenotype/phen_micro.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/phenotype/pm_fitting.pyc D: dh_python2 fs:260: package python-biopython details = {'requires.txt': {'debian/python-biopython/usr/lib/python2.7/dist-packages/biopython-1.73.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('2.7')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('2.7')}, 'ext_no_version': set()} D: dh_python2 depends:114: generating dependencies for package python-biopython D: dh_python2 pydist:138: trying to find dependency for numpy (python=2.7) D: dh_python2 depends:272: D={'python (<< 2.8)', 'python:any (>= 2.7~)', 'python (>= 2.7~)', 'python-numpy', 'python:any', 'python:any (<< 2.8)'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python2 dh_python2:415: processing package python-biopython-doc... D: dh_python2 fs:260: package python-biopython-doc details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python2 depends:114: generating dependencies for package python-biopython-doc D: dh_python2 depends:272: D=set(); R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python2 dh_python2:415: processing package python-biopython-sql... D: dh_python2 fs:209: removing unwanted: debian/python-biopython-sql/usr/lib/python2.7/dist-packages/BioSQL/BioSeq.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython-sql/usr/lib/python2.7/dist-packages/BioSQL/BioSeqDatabase.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython-sql/usr/lib/python2.7/dist-packages/BioSQL/DBUtils.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython-sql/usr/lib/python2.7/dist-packages/BioSQL/Loader.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython-sql/usr/lib/python2.7/dist-packages/BioSQL/__init__.pyc D: dh_python2 fs:260: package python-biopython-sql details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('2.7')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python2 depends:114: generating dependencies for package python-biopython-sql D: dh_python2 depends:272: D={'python:any', 'python:any (>= 2.7~)', 'python:any (<< 2.8)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 3.20190308 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:166: supported Python versions: 3.7 (default=3.7) D: dh_python3 debhelper:107: skipping package: python-biopython D: dh_python3 debhelper:107: skipping package: python-biopython-doc D: dh_python3 debhelper:107: skipping package: python-biopython-sql D: dh_python3 debhelper:153: source=python-biopython, binary packages=['python3-biopython', 'python3-biopython-sql'] D: dh_python3 dh_python3:183: processing package python3-biopython... D: dh_python3 fs:49: moving files from debian/python3-biopython/usr/lib/python3.7/dist-packages to debian/python3-biopython/usr/lib/python3/dist-packages/ D: dh_python3 tools:232: invoking: /usr/bin/python3.7 -c 'import sysconfig as s;print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' D: dh_python3 fs:260: package python3-biopython details = {'requires.txt': {'debian/python3-biopython/usr/lib/python3/dist-packages/biopython-1.73.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.7')}, 'ext_no_version': set()} D: dh_python3 depends:114: generating dependencies for package python3-biopython D: dh_python3 pydist:138: trying to find dependency for numpy (python=None) D: dh_python3 depends:272: D={'python3 (>= 3.7~)', 'python3-numpy', 'python3:any', 'python3 (<< 3.8)'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python3 dh_python3:183: processing package python3-biopython-sql... D: dh_python3 fs:49: moving files from debian/python3-biopython-sql/usr/lib/python3.7/dist-packages to debian/python3-biopython-sql/usr/lib/python3/dist-packages/ D: dh_python3 fs:260: package python3-biopython-sql details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:114: generating dependencies for package python3-biopython-sql D: dh_python3 depends:272: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild install -d debian/python-biopython-doc/usr/share/lintian/overrides install -p -m0644 debian/python-biopython-doc.lintian-overrides debian/python-biopython-doc/usr/share/lintian/overrides/python-biopython-doc dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild rm -f debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs/mathml2.dtd ln -s ../../../../../../share/xml/schema/w3c/mathml/dtd/mathml2.dtd debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs/mathml2.dtd rm -f debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd ln -s ../../../../../../share/xml/schema/w3c/mathml/dtd/mathml2.dtd debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd dh_strip_nondeterminism -O--buildsystem=pybuild Using 1547245432 as canonical time Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/simple_chrom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_linear_nice.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_linear.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_circular_nice.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_circular.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/KEGG/map03070.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/KEGG/map01100.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_simple.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_cl2a.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_cl.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/tRNA_chrom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/smcra.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-simple-draw.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-rooted.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-draw-example.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-dot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-color.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/dot_plot_scatter.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/dot_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_xs.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_s.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_m.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-color-draw.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-apaf.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-apaf-zoom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/hist_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/gc_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_l.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/SRR001666.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/PSIBlastRecord.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigils.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_labels.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_arrow_shafts.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_arrow_heads.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/BlastRecord.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz using File::StripNondeterminism::handlers::gzip dh_compress -O--buildsystem=pybuild cd debian/python-biopython cd debian/python3-biopython cd debian/python-biopython-doc cd debian/python-biopython-sql cd debian/python3-biopython-sql chmod a-x usr/share/doc/python-biopython-sql/changelog.Debian chmod a-x usr/share/doc/python3-biopython/changelog.Debian chmod a-x usr/share/doc/python3-biopython-sql/changelog.Debian gzip -9nf usr/share/doc/python3-biopython-sql/changelog.Debian gzip -9nf usr/share/doc/python3-biopython/changelog.Debian gzip -9nf usr/share/doc/python-biopython-sql/changelog.Debian chmod a-x usr/share/doc/python-biopython/CONTRIB.rst usr/share/doc/python-biopython/CONTRIBUTING.rst usr/share/doc/python-biopython/DEPRECATED.rst usr/share/doc/python-biopython/NEWS.rst usr/share/doc/python-biopython/changelog.Debian gzip -9nf usr/share/doc/python-biopython/CONTRIB.rst usr/share/doc/python-biopython/CONTRIBUTING.rst usr/share/doc/python-biopython/DEPRECATED.rst usr/share/doc/python-biopython/NEWS.rst usr/share/doc/python-biopython/changelog.Debian cd '/build/python-biopython-1.73+dfsg' cd '/build/python-biopython-1.73+dfsg' cd '/build/python-biopython-1.73+dfsg' cd '/build/python-biopython-1.73+dfsg' chmod a-x usr/share/doc/python-biopython-doc/Doc/Tutorial.pdf usr/share/doc/python-biopython-doc/Doc/Tutorial.tex usr/share/doc/python-biopython-doc/Doc/Tutorial.txt usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_advanced.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_align.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_blast.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_cluster.tex 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usr/share/doc/python-biopython-doc/Tests/output/test_Clustalw usr/share/doc/python-biopython-doc/Tests/output/test_GenBank usr/share/doc/python-biopython-doc/Tests/output/test_PDB usr/share/doc/python-biopython-doc/Tests/output/test_SeqIO usr/share/doc/python-biopython-doc/Tests/output/test_SubsMat usr/share/doc/python-biopython-doc/Tests/output/test_align usr/share/doc/python-biopython-doc/Tests/output/test_geo usr/share/doc/python-biopython-doc/Tests/phenotype/BadPlate.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plate.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plate_2.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plates.csv usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlate.json usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlate_2.json usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlates.csv usr/share/doc/python-biopython-doc/Tests/run_tests.py usr/share/doc/python-biopython-doc/Tests/search_tests_common.py usr/share/doc/python-biopython-doc/Tests/seq_tests_common.py usr/share/doc/python-biopython-doc/Tests/test_Ace.py usr/share/doc/python-biopython-doc/Tests/test_Affy.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_ClustalIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_EmbossIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_FastaIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_MauveIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_PhylipIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignInfo.py usr/share/doc/python-biopython-doc/Tests/test_Application.py usr/share/doc/python-biopython-doc/Tests/test_CelFile.py usr/share/doc/python-biopython-doc/Tests/test_ClustalOmega_tool.py usr/share/doc/python-biopython-doc/Tests/test_Clustalw_tool.py usr/share/doc/python-biopython-doc/Tests/test_Cluster.py usr/share/doc/python-biopython-doc/Tests/test_CodonTable.py usr/share/doc/python-biopython-doc/Tests/test_ColorSpiral.py usr/share/doc/python-biopython-doc/Tests/test_Consensus.py usr/share/doc/python-biopython-doc/Tests/test_Crystal.py usr/share/doc/python-biopython-doc/Tests/test_Dialign_tool.py usr/share/doc/python-biopython-doc/Tests/test_Emboss.py usr/share/doc/python-biopython-doc/Tests/test_EmbossPrimer.py usr/share/doc/python-biopython-doc/Tests/test_Entrez.py usr/share/doc/python-biopython-doc/Tests/test_Entrez_online.py usr/share/doc/python-biopython-doc/Tests/test_Entrez_parser.py usr/share/doc/python-biopython-doc/Tests/test_Enzyme.py usr/share/doc/python-biopython-doc/Tests/test_Fasttree_tool.py usr/share/doc/python-biopython-doc/Tests/test_File.py usr/share/doc/python-biopython-doc/Tests/test_GenBank.py usr/share/doc/python-biopython-doc/Tests/test_GenBank_unittest.py usr/share/doc/python-biopython-doc/Tests/test_GenomeDiagram.py usr/share/doc/python-biopython-doc/Tests/test_GraphicsChromosome.py usr/share/doc/python-biopython-doc/Tests/test_HMMCasino.py usr/share/doc/python-biopython-doc/Tests/test_HMMGeneral.py usr/share/doc/python-biopython-doc/Tests/test_KDTree.py usr/share/doc/python-biopython-doc/Tests/test_KEGG.py usr/share/doc/python-biopython-doc/Tests/test_KEGG_online.py usr/share/doc/python-biopython-doc/Tests/test_KGML_graphics.py usr/share/doc/python-biopython-doc/Tests/test_KGML_nographics.py usr/share/doc/python-biopython-doc/Tests/test_KeyWList.py usr/share/doc/python-biopython-doc/Tests/test_LogisticRegression.py gzip -9nf usr/share/doc/python-biopython-doc/Tests/test_MafIO_index.py usr/share/doc/python-biopython-doc/Tests/test_Mafft_tool.py usr/share/doc/python-biopython-doc/Tests/test_MarkovModel.py usr/share/doc/python-biopython-doc/Tests/test_Medline.py usr/share/doc/python-biopython-doc/Tests/test_Muscle_tool.py usr/share/doc/python-biopython-doc/Tests/test_NCBITextParser.py usr/share/doc/python-biopython-doc/Tests/test_NCBIXML.py usr/share/doc/python-biopython-doc/Tests/test_NCBI_BLAST_tools.py usr/share/doc/python-biopython-doc/Tests/test_NCBI_qblast.py usr/share/doc/python-biopython-doc/Tests/test_NaiveBayes.py usr/share/doc/python-biopython-doc/Tests/test_Nexus.py usr/share/doc/python-biopython-doc/Tests/test_PAML_baseml.py usr/share/doc/python-biopython-doc/Tests/test_PAML_codeml.py usr/share/doc/python-biopython-doc/Tests/test_PAML_yn00.py usr/share/doc/python-biopython-doc/Tests/test_PDB.py usr/share/doc/python-biopython-doc/Tests/test_PDBList.py usr/share/doc/python-biopython-doc/Tests/test_PDB_KDTree.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIF2Dict.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIFParser.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Superimposer.py usr/share/doc/python-biopython-doc/Tests/test_Pathway.py usr/share/doc/python-biopython-doc/Tests/test_Phd.py usr/share/doc/python-biopython-doc/Tests/test_Phylo.py usr/share/doc/python-biopython-doc/Tests/test_PhyloXML.py usr/share/doc/python-biopython-doc/Tests/test_PopGen_GenePop_nodepend.py usr/share/doc/python-biopython-doc/Tests/test_Prank_tool.py usr/share/doc/python-biopython-doc/Tests/test_ProtParam.py usr/share/doc/python-biopython-doc/Tests/test_QCPSuperimposer.py usr/share/doc/python-biopython-doc/Tests/test_Restriction.py usr/share/doc/python-biopython-doc/Tests/test_SCOP_Raf.py usr/share/doc/python-biopython-doc/Tests/test_SCOP_Scop.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blat_psl.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_exonerate.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_fasta_m10.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_legacy.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_model.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqFeature.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_AbiIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_FastaIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_PdbIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_QualityIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_SeqXML.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_convert.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_features.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_index.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqRecord.py usr/share/doc/python-biopython-doc/Tests/test_SeqUtils.py usr/share/doc/python-biopython-doc/Tests/test_Seq_objs.py usr/share/doc/python-biopython-doc/Tests/test_SffIO.py usr/share/doc/python-biopython-doc/Tests/test_SwissProt.py usr/share/doc/python-biopython-doc/Tests/test_TCoffee_tool.py usr/share/doc/python-biopython-doc/Tests/test_TogoWS.py usr/share/doc/python-biopython-doc/Tests/test_TreeConstruction.py usr/share/doc/python-biopython-doc/Tests/test_Tutorial.py usr/share/doc/python-biopython-doc/Tests/test_UniGene.py usr/share/doc/python-biopython-doc/Tests/test_Uniprot.py usr/share/doc/python-biopython-doc/Tests/test_align.py usr/share/doc/python-biopython-doc/Tests/test_bgzf.py usr/share/doc/python-biopython-doc/Tests/test_cellosaurus.py usr/share/doc/python-biopython-doc/Tests/test_codonalign.py usr/share/doc/python-biopython-doc/Tests/test_mmtf.py usr/share/doc/python-biopython-doc/Tests/test_motifs.py usr/share/doc/python-biopython-doc/Tests/test_pairwise2.py usr/share/doc/python-biopython-doc/Tests/test_pairwise_aligner.py usr/share/doc/python-biopython-doc/Tests/test_phenotype.py usr/share/doc/python-biopython-doc/Tests/test_prodoc.py usr/share/doc/python-biopython-doc/Tests/test_prosite1.py usr/share/doc/python-biopython-doc/Tests/test_prosite2.py usr/share/doc/python-biopython-doc/Tests/test_psw.py usr/share/doc/python-biopython-doc/Tests/test_samtools_tool.py usr/share/doc/python-biopython-doc/Tests/test_seq.py usr/share/doc/python-biopython-doc/Tests/test_trie.py usr/share/doc/python-biopython-doc/Tests/tmp_MAF/ucsc_mm9_chr10.maf usr/share/doc/python-biopython-doc/Tests/tmp_MAF/ucsc_mm9_chr10_abs_abs.mafindex usr/share/doc/python-biopython-doc/Tests/tmp_MAF/ucsc_mm9_chr10_abs_rel.mafindex usr/share/doc/python-biopython-doc/Tests/tmp_MAF/ucsc_mm9_chr10_bad.maf usr/share/doc/python-biopython-doc/Tests/tmp_MAF/ucsc_mm9_chr10_rel_abs.mafindex usr/share/doc/python-biopython-doc/Tests/tmp_MAF/ucsc_mm9_chr10_rel_rel.mafindex usr/share/doc/python-biopython-doc/Tests_avoid/test_BWA_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_EmbossPhylipNew.py usr/share/doc/python-biopython-doc/Tests_avoid/test_MSAProbs_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PAML_tools.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PopGen_GenePop_EasyController.py usr/share/doc/python-biopython-doc/Tests_avoid/test_XXmotif_tool.py usr/share/doc/python-biopython-doc/changelog.Debian cd '/build/python-biopython-1.73+dfsg' rm -f debian/python-biopython-doc.debhelper.log debian/python-biopython-sql.debhelper.log debian/python3-biopython-sql.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/build/python-biopython-1.73+dfsg' dh_fixperms find debian/python-biopython -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python3-biopython -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python-biopython-doc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python3-biopython-sql -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python-biopython-sql -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python-biopython-sql ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython-sql ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biopython-sql/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biopython-sql/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython-sql/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython-sql/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython-sql/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-biopython-sql/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython-sql -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython-sql -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython-sql/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python-biopython-sql/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python-biopython ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biopython-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biopython/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biopython/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python-biopython/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python-biopython-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biopython-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-biopython-doc/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian -name "*.dtd" -exec chmod -x \{\} \; chmod: cannot operate on dangling symlink 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd' chmod: cannot operate on dangling symlink 'debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs/mathml2.dtd' make[1]: Leaving directory '/build/python-biopython-1.73+dfsg' dh_missing -O--buildsystem=pybuild dh_missing: usr/lib/python3.7/dist-packages/home/.cache/matplotlib/fontlist-v300.json exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/Tutorial.tex exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/examples/.flake8 exists in 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usr/lib/python2.7/dist-packages/Tests/SamBam/ex1.bam exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SamBam/ex1.fa exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SamBam/ex1.sam exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SamBam/ex1_header.bam exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SamBam/ex1_header.sam exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SamBam/ex1_refresh.bam exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SamBam/readme.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SamBam/sam1.sam exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SamBam/sam2.sam exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SeqXML/corrupt_example1.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SeqXML/corrupt_example2.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SeqXML/dna_example.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SeqXML/global_species_example.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SeqXML/protein_example.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SeqXML/rna_example.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/Stockholm/funny.sth exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/Stockholm/simple.sth exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SubsMat/aaDistrib.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SubsMat/acc_rep_mat.pik exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SubsMat/protein_count.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SubsMat/protein_freq.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SubsMat/redAADistrib.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SubsMat/redAltAADistrib.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/F2CXE6.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/F2CXE6.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/H2CNN8.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/H2CNN8.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/P84001.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/P97881.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/Q13639.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/Q13639.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/R5HY77.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/README exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/keywlist.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/keywlist2.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/multi_ex.fasta exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/multi_ex.gff exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/multi_ex.list exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/multi_ex.rdf exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/multi_ex.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/multi_ex.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/sp001 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/sp002 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/sp003 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/sp004 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/sp005 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/sp006 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/sp007 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/sp008 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/sp009 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/sp010 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/sp011 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/sp012 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/sp013 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/sp014 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/sp015 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/sp016 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/uni001 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/uni002 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/SwissProt/uni003 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/TreeConstruction/adam_refs.tre exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/TreeConstruction/consensus_refs.tre exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/TreeConstruction/majority_ref.tre exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/TreeConstruction/msa.phy exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/TreeConstruction/neighbor_trees.tre exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/TreeConstruction/nj.tre exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/TreeConstruction/pars3.tre exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/TreeConstruction/strict_refs.tre exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/TreeConstruction/test.log exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/TreeConstruction/trees.tre exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/TreeConstruction/upgma.tre exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/UniGene/Eca.1.2425.data exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/UniGene/Hs.2.data exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/UniGene/Mdm_partial.data exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/UniProt/goa_yeast.gaf exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/Wise/human_114_g01_exons.fna_01 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/Wise/human_114_g02_exons.fna_01 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/codonalign/adh.aln exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/codonalign/drosophilla.fasta exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/codonalign/egfr_id exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/codonalign/egfr_nucl.fa exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/codonalign/egfr_pro.aln exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/codonalign/nucl1.fa exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/codonalign/nucl2.fa exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/codonalign/nucl3.fa exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/codonalign/nucl4.fa exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/codonalign/nucl5.fa exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/codonalign/pro1.aln exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/codonalign/pro2.aln exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/codonalign/pro3.aln exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/codonalign/pro4.aln exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/codonalign/pro5.aln exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/motifs/Arnt.sites exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/motifs/REB1.pfm exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/motifs/SRF.pfm exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/motifs/alignace.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/motifs/mast.dna.oops.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/motifs/mast.protein.oops.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/motifs/mast.protein.tcm.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/motifs/meme.dna.oops.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/motifs/meme.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/motifs/meme.protein.oops.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/motifs/meme.protein.tcm.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/motifs/meme.rna.oops.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/motifs/meme_v_4_11_4.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/motifs/minimal_test.meme exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/motifs/transfac.dat exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_AlignIO exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_AlignIO_MauveIO exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_ClustalOmega_tool exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_Clustalw exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_Clustalw_tool exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_CodonUsage exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_FSSP exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_Fasttree_tool exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_File exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_GFF exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_GFF2 exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_GenBank exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_HMMCasino exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_KEGG exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_Location exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_NCBI_qblast exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_PDB exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_SearchIO_legacy exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_SeqIO exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_SubsMat exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_align exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_geo exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_property_manager exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/output/test_translate exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/phenotype/BadPlate.json exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/phenotype/Plate.json exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/phenotype/Plate_2.json exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/phenotype/Plates.csv exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/phenotype/SmallPlate.json exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/phenotype/SmallPlate_2.json exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/phenotype/SmallPlates.csv exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/tmp_MAF/ucsc_mm9_chr10.maf exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/tmp_MAF/ucsc_mm9_chr10_abs_abs.mafindex exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/tmp_MAF/ucsc_mm9_chr10_abs_rel.mafindex exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/tmp_MAF/ucsc_mm9_chr10_bad.maf exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/tmp_MAF/ucsc_mm9_chr10_rel_abs.mafindex exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/tmp_MAF/ucsc_mm9_chr10_rel_rel.mafindex exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: python-biopython (2), python-biopython-doc (0), python-biopython-sql (1), python3-biopython (2), python3-biopython-sql (1) * dh_installdocs: python-biopython (4), python-biopython-doc (4), python-biopython-sql (0), python3-biopython (0), python3-biopython-sql (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built For a short-term work-around: Add the files to debian/not-installed dh_dwz -O--buildsystem=pybuild install -d debian/python-biopython/usr/lib/debug/.dwz/aarch64-linux-gnu dwz -q -mdebian/python-biopython/usr/lib/debug/.dwz/aarch64-linux-gnu/python-biopython.debug -M/usr/lib/debug/.dwz/aarch64-linux-gnu/python-biopython.debug -- debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/_aligners.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Cluster/_cluster.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/KDTree/_CKDTree.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Nexus/cnexus.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer/qcprot.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/kdtrees.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/cpairwise2.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/motifs/_pwm.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/trie.aarch64-linux-gnu.so objcopy --compress-debug-sections debian/python-biopython/usr/lib/debug/.dwz/aarch64-linux-gnu/python-biopython.debug install -d debian/python3-biopython/usr/lib/debug/.dwz/aarch64-linux-gnu dwz -q -mdebian/python3-biopython/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biopython.debug -M/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biopython.debug -- debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/KDTree/_CKDTree.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/trie.cpython-37m-aarch64-linux-gnu.so objcopy --compress-debug-sections debian/python3-biopython/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biopython.debug dh_strip -O--buildsystem=pybuild install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/85 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/trie.cpython-37m-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/85/d425c171d1280617fff0f4cb10c739001c5fba.debug install -d debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/42 objcopy --only-keep-debug --compress-debug-sections debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/trie.aarch64-linux-gnu.so debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/42/15a252d8146ea61759d4675403f5f4422e8957.debug chmod 0644 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/42/15a252d8146ea61759d4675403f5f4422e8957.debug chown 0:0 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/42/15a252d8146ea61759d4675403f5f4422e8957.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/trie.aarch64-linux-gnu.so chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/85/d425c171d1280617fff0f4cb10c739001c5fba.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/85/d425c171d1280617fff0f4cb10c739001c5fba.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/trie.cpython-37m-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/42/15a252d8146ea61759d4675403f5f4422e8957.debug debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/trie.aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/85/d425c171d1280617fff0f4cb10c739001c5fba.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/trie.cpython-37m-aarch64-linux-gnu.so install -d debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/6e objcopy --only-keep-debug --compress-debug-sections debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/cpairwise2.aarch64-linux-gnu.so debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/6e/6634428cce4b3c7c3f2b6714f5531d9d919a2d.debug install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/80 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-37m-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/80/02c079307182fdd3c724d63804b3a699a1c4f7.debug chmod 0644 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/6e/6634428cce4b3c7c3f2b6714f5531d9d919a2d.debug chown 0:0 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/6e/6634428cce4b3c7c3f2b6714f5531d9d919a2d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/cpairwise2.aarch64-linux-gnu.so chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/80/02c079307182fdd3c724d63804b3a699a1c4f7.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/80/02c079307182fdd3c724d63804b3a699a1c4f7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-37m-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/6e/6634428cce4b3c7c3f2b6714f5531d9d919a2d.debug debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/cpairwise2.aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/80/02c079307182fdd3c724d63804b3a699a1c4f7.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-37m-aarch64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/8a objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/KDTree/_CKDTree.cpython-37m-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/8a/33ff1560b766c63483f324100e8d091e786a75.debug install -d debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/ab objcopy --only-keep-debug --compress-debug-sections debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/_aligners.aarch64-linux-gnu.so debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/ab/2cc562bcd1ae190c1deaef8dc590cb3dc60ab0.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/8a/33ff1560b766c63483f324100e8d091e786a75.debug chown 0:0 -- 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debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/ab/2cc562bcd1ae190c1deaef8dc590cb3dc60ab0.debug chown 0:0 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/ab/2cc562bcd1ae190c1deaef8dc590cb3dc60ab0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/_aligners.aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/ab/2cc562bcd1ae190c1deaef8dc590cb3dc60ab0.debug debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/_aligners.aarch64-linux-gnu.so install -d debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/4e objcopy --only-keep-debug --compress-debug-sections debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/kdtrees.aarch64-linux-gnu.so 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objcopy --add-gnu-debuglink debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/4e/868a59a911fb65df7b933a268dcbd1b9b4c965.debug debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/kdtrees.aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9c/836875300e1548ebe310174f1d1ec479a36e96.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-37m-aarch64-linux-gnu.so install -d debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/f4 objcopy --only-keep-debug --compress-debug-sections debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer/qcprot.aarch64-linux-gnu.so debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/f4/3c4c7b49331cfc5f04977493d1706794e1db97.debug install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/6b objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-37m-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/6b/9cf0ec3d5d327976957c4a454b654dc9209e8a.debug chmod 0644 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/f4/3c4c7b49331cfc5f04977493d1706794e1db97.debug chown 0:0 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/f4/3c4c7b49331cfc5f04977493d1706794e1db97.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer/qcprot.aarch64-linux-gnu.so chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/6b/9cf0ec3d5d327976957c4a454b654dc9209e8a.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/6b/9cf0ec3d5d327976957c4a454b654dc9209e8a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-37m-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/f4/3c4c7b49331cfc5f04977493d1706794e1db97.debug debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer/qcprot.aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/6b/9cf0ec3d5d327976957c4a454b654dc9209e8a.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-37m-aarch64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/23 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-37m-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/23/d17ba0c84416b4dd35d918bd8b55a9299bfccc.debug install -d debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/db objcopy --only-keep-debug --compress-debug-sections debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/motifs/_pwm.aarch64-linux-gnu.so debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/db/8ce8ed465821404f851746a52d7b687891c698.debug chmod 0644 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/db/8ce8ed465821404f851746a52d7b687891c698.debug chown 0:0 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/db/8ce8ed465821404f851746a52d7b687891c698.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/motifs/_pwm.aarch64-linux-gnu.so chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/23/d17ba0c84416b4dd35d918bd8b55a9299bfccc.debug chown 0:0 -- 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debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/ad/ec870140f5542bb349c751a2c523fb8e59858d.debug chmod 0644 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/ad/ec870140f5542bb349c751a2c523fb8e59858d.debug chown 0:0 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/ad/ec870140f5542bb349c751a2c523fb8e59858d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/KDTree/_CKDTree.aarch64-linux-gnu.so chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bd/f587880e87b88abb9880313ba0149d7c3f3004.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bd/f587880e87b88abb9880313ba0149d7c3f3004.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-37m-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/ad/ec870140f5542bb349c751a2c523fb8e59858d.debug debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/KDTree/_CKDTree.aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bd/f587880e87b88abb9880313ba0149d7c3f3004.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-37m-aarch64-linux-gnu.so install -d debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python-biopython/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.dwz install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-biopython/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python-biopython/usr/lib/debug/.dwz rm -fr debian/python3-biopython/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python-biopython/usr/lib/debug rmdir -p --ignore-fail-on-non-empty debian/python3-biopython/usr/lib/debug install -d debian/.debhelper/python-biopython/dbgsym-root/usr/share/doc ln -s python-biopython debian/.debhelper/python-biopython/dbgsym-root/usr/share/doc/python-biopython-dbgsym install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc ln -s python3-biopython debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc/python3-biopython-dbgsym dh_makeshlibs -O--buildsystem=pybuild rm -f debian/python-biopython/DEBIAN/shlibs rm -f debian/python3-biopython/DEBIAN/shlibs rm -f debian/python-biopython-doc/DEBIAN/shlibs rm -f debian/python-biopython-sql/DEBIAN/shlibs rm -f debian/python3-biopython-sql/DEBIAN/shlibs dh_shlibdeps -O--buildsystem=pybuild install -d debian/python-biopython/DEBIAN dpkg-shlibdeps -Tdebian/python-biopython.substvars debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/cpairwise2.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/trie.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/_aligners.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/kdtrees.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer/qcprot.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/motifs/_pwm.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Nexus/cnexus.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Cluster/_cluster.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/KDTree/_CKDTree.aarch64-linux-gnu.so install -d debian/python3-biopython/DEBIAN dpkg-shlibdeps -Tdebian/python3-biopython.substvars debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/trie.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/KDTree/_CKDTree.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-37m-aarch64-linux-gnu.so dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/trie.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer/qcprot.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/kdtrees.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/KDTree/_CKDTree.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Nexus/cnexus.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/cpairwise2.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/_aligners.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Cluster/_cluster.aarch64-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/motifs/_pwm.aarch64-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/KDTree/_CKDTree.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/trie.cpython-37m-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-37m-aarch64-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols) dh_installdeb -O--buildsystem=pybuild printf '#!/bin/sh\nset -e\n' > debian/python-biopython/DEBIAN/postinst cat debian/python-biopython.postinst.debhelper >> debian/python-biopython/DEBIAN/postinst chmod 0755 -- debian/python-biopython/DEBIAN/postinst chown 0:0 -- debian/python-biopython/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python-biopython/DEBIAN/prerm cat debian/python-biopython.prerm.debhelper >> debian/python-biopython/DEBIAN/prerm chmod 0755 -- debian/python-biopython/DEBIAN/prerm chown 0:0 -- debian/python-biopython/DEBIAN/prerm printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/postinst cat debian/python3-biopython.postinst.debhelper >> debian/python3-biopython/DEBIAN/postinst chmod 0755 -- debian/python3-biopython/DEBIAN/postinst chown 0:0 -- debian/python3-biopython/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/prerm cat debian/python3-biopython.prerm.debhelper >> debian/python3-biopython/DEBIAN/prerm chmod 0755 -- debian/python3-biopython/DEBIAN/prerm chown 0:0 -- debian/python3-biopython/DEBIAN/prerm install -d debian/python-biopython-doc/DEBIAN install -d debian/python-biopython-sql/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python-biopython-sql/DEBIAN/postinst cat debian/python-biopython-sql.postinst.debhelper >> debian/python-biopython-sql/DEBIAN/postinst chmod 0755 -- debian/python-biopython-sql/DEBIAN/postinst chown 0:0 -- debian/python-biopython-sql/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python-biopython-sql/DEBIAN/prerm cat debian/python-biopython-sql.prerm.debhelper >> debian/python-biopython-sql/DEBIAN/prerm chmod 0755 -- debian/python-biopython-sql/DEBIAN/prerm chown 0:0 -- debian/python-biopython-sql/DEBIAN/prerm install -d debian/python3-biopython-sql/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-biopython-sql/DEBIAN/postinst cat debian/python3-biopython-sql.postinst.debhelper >> debian/python3-biopython-sql/DEBIAN/postinst chmod 0755 -- debian/python3-biopython-sql/DEBIAN/postinst chown 0:0 -- debian/python3-biopython-sql/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biopython-sql/DEBIAN/prerm cat debian/python3-biopython-sql.prerm.debhelper >> debian/python3-biopython-sql/DEBIAN/prerm chmod 0755 -- debian/python3-biopython-sql/DEBIAN/prerm chown 0:0 -- debian/python3-biopython-sql/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild echo misc:Depends= >> debian/python-biopython-doc.substvars echo misc:Pre-Depends= >> debian/python-biopython-doc.substvars dpkg-gencontrol -ppython-biopython-doc -ldebian/changelog -Tdebian/python-biopython-doc.substvars -Pdebian/python-biopython-doc -UMulti-Arch echo misc:Depends= >> debian/python-biopython-sql.substvars echo misc:Pre-Depends= >> debian/python-biopython-sql.substvars dpkg-gencontrol -ppython-biopython-sql -ldebian/changelog -Tdebian/python-biopython-sql.substvars -Pdebian/python-biopython-sql -UMulti-Arch echo misc:Depends= >> debian/python3-biopython-sql.substvars echo misc:Pre-Depends= >> debian/python3-biopython-sql.substvars dpkg-gencontrol -ppython3-biopython-sql -ldebian/changelog -Tdebian/python3-biopython-sql.substvars -Pdebian/python3-biopython-sql -UMulti-Arch echo misc:Depends= >> debian/python-biopython.substvars echo misc:Pre-Depends= >> debian/python-biopython.substvars install -d debian/.debhelper/python-biopython/dbgsym-root/DEBIAN dpkg-gencontrol -ppython-biopython -ldebian/changelog -Tdebian/python-biopython.substvars -Pdebian/.debhelper/python-biopython/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=python-biopython-dbgsym "-DDepends=python-biopython (= \${binary:Version})" "-DDescription=debug symbols for python-biopython" "-DBuild-Ids=4215a252d8146ea61759d4675403f5f4422e8957 46a73e6de741088d23f28ae269694aed837877c8 4e868a59a911fb65df7b933a268dcbd1b9b4c965 6e6634428cce4b3c7c3f2b6714f5531d9d919a2d ab2cc562bcd1ae190c1deaef8dc590cb3dc60ab0 adec870140f5542bb349c751a2c523fb8e59858d db8ce8ed465821404f851746a52d7b687891c698 f43c4c7b49331cfc5f04977493d1706794e1db97 fbbfa361306da11dafec4302f54087c602e990c6" -DSection=debug -UMulti-Arch -UReplaces -UBreaks echo misc:Depends= >> debian/python3-biopython.substvars echo misc:Pre-Depends= >> debian/python3-biopython.substvars install -d debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/.debhelper/python3-biopython/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=python3-biopython-dbgsym "-DDepends=python3-biopython (= \${binary:Version})" "-DDescription=debug symbols for python3-biopython" "-DBuild-Ids=23d17ba0c84416b4dd35d918bd8b55a9299bfccc 6b9cf0ec3d5d327976957c4a454b654dc9209e8a 8002c079307182fdd3c724d63804b3a699a1c4f7 85d425c171d1280617fff0f4cb10c739001c5fba 8a33ff1560b766c63483f324100e8d091e786a75 900ac21fd61867e63bd452b4d0e0cf1b38aa4597 9c836875300e1548ebe310174f1d1ec479a36e96 bbf5f7553e5665b1de06789c6e43fb68906aa729 bdf587880e87b88abb9880313ba0149d7c3f3004" -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package python-biopython-sql: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: Provides field of package python3-biopython-sql: substitution variable ${python:Provides} used, but is not defined chmod 0644 -- debian/python-biopython-sql/DEBIAN/control chown 0:0 -- debian/python-biopython-sql/DEBIAN/control chmod 0644 -- debian/python3-biopython-sql/DEBIAN/control chown 0:0 -- debian/python3-biopython-sql/DEBIAN/control dpkg-gencontrol: warning: package python-biopython: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-biopython: substitution variable ${python:Versions} unused, but is defined chmod 0644 -- debian/.debhelper/python-biopython/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/python-biopython/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython-biopython -ldebian/changelog -Tdebian/python-biopython.substvars -Pdebian/python-biopython -UMulti-Arch chmod 0644 -- debian/python-biopython-doc/DEBIAN/control chown 0:0 -- debian/python-biopython-doc/DEBIAN/control dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/python3-biopython -UMulti-Arch dpkg-gencontrol: warning: package python-biopython: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-biopython: substitution variable ${python:Versions} unused, but is defined chmod 0644 -- debian/python-biopython/DEBIAN/control chown 0:0 -- debian/python-biopython/DEBIAN/control dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/python3-biopython/DEBIAN/control chown 0:0 -- debian/python3-biopython/DEBIAN/control dh_md5sums -O--buildsystem=pybuild cd debian/python3-biopython-sql >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python-biopython-sql >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python-biopython >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-biopython >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-biopython-sql/DEBIAN/md5sums chown 0:0 -- debian/python3-biopython-sql/DEBIAN/md5sums cd debian/python-biopython-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python-biopython-sql/DEBIAN/md5sums chown 0:0 -- debian/python-biopython-sql/DEBIAN/md5sums chmod 0644 -- debian/python-biopython/DEBIAN/md5sums chown 0:0 -- debian/python-biopython/DEBIAN/md5sums chmod 0644 -- debian/python3-biopython/DEBIAN/md5sums chown 0:0 -- debian/python3-biopython/DEBIAN/md5sums cd debian/.debhelper/python-biopython/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/python3-biopython/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python-biopython/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/python-biopython/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/python-biopython-doc/DEBIAN/md5sums chown 0:0 -- debian/python-biopython-doc/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --build debian/python-biopython .. dpkg-deb --build debian/.debhelper/python-biopython/dbgsym-root .. dpkg-deb --build debian/python3-biopython .. dpkg-deb --build debian/.debhelper/python3-biopython/dbgsym-root .. dpkg-deb --build debian/python-biopython-doc .. dpkg-deb --build debian/python-biopython-sql .. dpkg-deb --build debian/python3-biopython-sql .. dpkg-deb: building package 'python-biopython-dbgsym' in '../python-biopython-dbgsym_1.73+dfsg-1_arm64.deb'. dpkg-deb: building package 'python-biopython' in '../python-biopython_1.73+dfsg-1_arm64.deb'. dpkg-deb: building package 'python-biopython-doc' in '../python-biopython-doc_1.73+dfsg-1_all.deb'. dpkg-deb: building package 'python-biopython-sql' in '../python-biopython-sql_1.73+dfsg-1_all.deb'. dpkg-deb: building package 'python3-biopython-dbgsym' in '../python3-biopython-dbgsym_1.73+dfsg-1_arm64.deb'. dpkg-deb: building package 'python3-biopython-sql' in '../python3-biopython-sql_1.73+dfsg-1_all.deb'. dpkg-deb: building package 'python3-biopython' in '../python3-biopython_1.73+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-biopython_1.73+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2219 and its subdirectories I: Current time: Thu Sep 16 00:52:15 -12 2021 I: pbuilder-time-stamp: 1631796735