I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 1 23:15:35 -12 2021 I: pbuilder-time-stamp: 1630581335 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pybel_0.12.1-1.dsc] I: copying [./pybel_0.12.1.orig.tar.gz] I: copying [./pybel_0.12.1-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Oct 23 00:16:04 2018 -12 gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pybel_0.12.1-1.dsc dpkg-source: info: extracting pybel in pybel-0.12.1 dpkg-source: info: unpacking pybel_0.12.1.orig.tar.gz dpkg-source: info: unpacking pybel_0.12.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying not_testing_what_fails.patch dpkg-source: info: applying python3_compat.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/29449/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='29449' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ETVfaMJoZY/pbuilderrc_GZur --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ETVfaMJoZY/b1 --logfile b1/build.log pybel_0.12.1-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink-sled13-arm64 4.4.0-186-generic #216-Ubuntu SMP Wed Jul 1 05:35:21 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 1 02:48 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/29449/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11), dh-python, python3-all, python3-setuptools, python3-click-plugins, python3-networkx, python3-pyparsing, python3-requests-file, python3-six, python3-sqlalchemy, python3-tqdm dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-click-plugins; however: Package python3-click-plugins is not installed. pbuilder-satisfydepends-dummy depends on python3-networkx; however: Package python3-networkx is not installed. pbuilder-satisfydepends-dummy depends on python3-pyparsing; however: Package python3-pyparsing is not installed. pbuilder-satisfydepends-dummy depends on python3-requests-file; however: Package python3-requests-file is not installed. pbuilder-satisfydepends-dummy depends on python3-six; however: Package python3-six is not installed. pbuilder-satisfydepends-dummy depends on python3-sqlalchemy; however: Package python3-sqlalchemy is not installed. pbuilder-satisfydepends-dummy depends on python3-tqdm; however: Package python3-tqdm is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libpipeline1{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-certifi{a} python3-chardet{a} python3-click{a} python3-click-plugins{a} python3-colorama{a} python3-decorator{a} python3-distutils{a} python3-idna{a} python3-lib2to3{a} python3-minimal{a} python3-networkx{a} python3-pkg-resources{a} python3-pyparsing{a} python3-requests{a} python3-requests-file{a} python3-setuptools{a} python3-six{a} python3-sqlalchemy{a} python3-tqdm{a} python3-urllib3{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx python3-gdal python3-numpy python3-scipy python3-sqlalchemy-ext python3-yaml shared-mime-info wget xdg-user-dirs 0 packages upgraded, 69 newly installed, 0 to remove and 0 not upgraded. Need to get 28.5 MB of archives. After unpacking 114 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 libpython3.7-minimal arm64 3.7.3-2+deb10u1 [588 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 python3.7-minimal arm64 3.7.3-2+deb10u1 [1404 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 python3-minimal arm64 3.7.3-1 [36.6 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libmpdec2 arm64 2.4.2-2 [77.7 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 libreadline7 arm64 7.0-5 [134 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libpython3.7-stdlib arm64 3.7.3-2+deb10u1 [1640 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 python3.7 arm64 3.7.3-2+deb10u1 [330 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libpython3-stdlib arm64 3.7.3-1 [20.0 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 python3 arm64 3.7.3-1 [61.5 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 openssl arm64 1.1.1d-0+deb10u3 [823 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 ca-certificates all 20190110 [157 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 python3-distutils all 3.7.3-1 [142 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 dh-python all 3.20190308 [99.3 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 python3-all arm64 3.7.3-1 [1068 B] Get: 53 http://deb.debian.org/debian buster/main arm64 python3-certifi all 2018.8.24-1 [140 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 python3-chardet all 3.0.4-3 [80.5 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 python3-colorama all 0.3.7-1 [18.1 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 python3-click all 7.0-1 [73.6 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 python3-click-plugins all 1.0.4-1 [7540 B] Get: 59 http://deb.debian.org/debian buster/main arm64 python3-decorator all 4.3.0-1.1 [14.5 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 python3-idna all 2.6-1 [34.3 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 python3-networkx all 2.2-1 [818 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 python3-six all 1.12.0-1 [15.7 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 python3-urllib3 all 1.24.1-1 [97.1 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 python3-requests all 2.21.0-1 [66.9 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 python3-requests-file all 1.4.3-1 [5340 B] Get: 67 http://deb.debian.org/debian buster/main arm64 python3-setuptools all 40.8.0-1 [306 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 python3-sqlalchemy all 1.2.18+ds1-2 [727 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 python3-tqdm all 4.28.1-1 [66.5 kB] Fetched 28.5 MB in 2s (13.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../1-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../2-libuchardet0_0.0.6-3_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../3-groff-base_1.22.4-3_arm64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../4-libpipeline1_1.5.1-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../5-man-db_2.8.5-2_arm64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libssl1.1:arm64. Preparing to unpack .../6-libssl1.1_1.1.1d-0+deb10u3_arm64.deb ... Unpacking libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Selecting previously unselected package libpython3.7-minimal:arm64. Preparing to unpack .../7-libpython3.7-minimal_3.7.3-2+deb10u1_arm64.deb ... Unpacking libpython3.7-minimal:arm64 (3.7.3-2+deb10u1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../8-libexpat1_2.2.6-2+deb10u1_arm64.deb ... 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Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libpython3.7-stdlib:arm64 (3.7.3-2+deb10u1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:arm64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libpython3-stdlib:arm64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u1) ... Setting up gettext (0.19.8.1-9) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-sqlalchemy (1.2.18+ds1-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-six (1.12.0-1) ... Setting up python3-decorator (4.3.0-1.1) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up python3-certifi (2018.8.24-1) ... Setting up python3-idna (2.6-1) ... Setting up python3-urllib3 (1.24.1-1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up python3-setuptools (40.8.0-1) ... Setting up python3-colorama (0.3.7-1) ... Setting up po-debconf (1.0.21) ... Setting up python3-tqdm (4.28.1-1) ... Setting up python3-all (3.7.3-1) ... Setting up python3-click (7.0-1) ... Setting up python3-networkx (2.2-1) ... Setting up python3-chardet (3.0.4-3) ... Setting up python3-requests (2.21.0-1) ... Setting up python3-click-plugins (1.0.4-1) ... Setting up python3-requests-file (1.4.3-1) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/pybel-0.12.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package pybel dpkg-buildpackage: info: source version 0.12.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from pybel-0.12.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/pybel-0.12.1' dh_auto_clean I: pybuild base:217: python3.7 setup.py clean running clean removing '/build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it rm -rf src/PyBEL.egg-info/ make[1]: Leaving directory '/build/pybel-0.12.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel copying src/pybel/utils.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel copying src/pybel/tokens.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel copying src/pybel/language.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel copying src/pybel/exceptions.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel copying src/pybel/constants.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel copying src/pybel/cli.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel copying src/pybel/canonicalize.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel copying src/pybel/__main__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel copying src/pybel/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing copying src/pybel/testing/utils.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing copying src/pybel/testing/mocks.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing copying src/pybel/testing/mock_manager.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing copying src/pybel/testing/generate.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing copying src/pybel/testing/constants.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing copying src/pybel/testing/cases.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing copying src/pybel/testing/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct copying src/pybel/struct/utils.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct copying src/pybel/struct/operations.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct copying src/pybel/struct/graph.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct copying src/pybel/struct/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources copying src/pybel/resources/utils.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources copying src/pybel/resources/exc.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources copying src/pybel/resources/document.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources copying src/pybel/resources/constants.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources copying src/pybel/resources/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser copying src/pybel/parser/utils.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser copying src/pybel/parser/parse_metadata.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser copying src/pybel/parser/parse_identifier.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser copying src/pybel/parser/parse_control.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser copying src/pybel/parser/parse_bel.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser copying src/pybel/parser/exc.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser copying src/pybel/parser/baseparser.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser copying src/pybel/parser/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager copying src/pybel/manager/utils.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager copying src/pybel/manager/query_manager.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager copying src/pybel/manager/models.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager copying src/pybel/manager/make_json_serializable.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager copying src/pybel/manager/lookup_manager.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager copying src/pybel/manager/exc.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager copying src/pybel/manager/defaults.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager copying src/pybel/manager/database_io.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager copying src/pybel/manager/citation_utils.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager copying src/pybel/manager/cache_manager.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager copying src/pybel/manager/base_manager.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager copying src/pybel/manager/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io copying src/pybel/io/web.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io copying src/pybel/io/utils.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io copying src/pybel/io/nodelink.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io copying src/pybel/io/neo4j.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io copying src/pybel/io/lines.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io copying src/pybel/io/line_utils.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io copying src/pybel/io/jgif.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io copying src/pybel/io/indra.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io copying src/pybel/io/gpickle.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io copying src/pybel/io/extras.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io copying src/pybel/io/exc.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io copying src/pybel/io/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples copying src/pybel/examples/various_example.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples copying src/pybel/examples/tloc_example.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples copying src/pybel/examples/statin_example.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples copying src/pybel/examples/sialic_acid_example.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples copying src/pybel/examples/homology_example.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples copying src/pybel/examples/egf_example.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples copying src/pybel/examples/braf_example.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples copying src/pybel/examples/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl copying src/pybel/dsl/utils.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl copying src/pybel/dsl/nodes.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl copying src/pybel/dsl/node_classes.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl copying src/pybel/dsl/namespaces.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl copying src/pybel/dsl/exc.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl copying src/pybel/dsl/edges.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl copying src/pybel/dsl/constants.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl copying src/pybel/dsl/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/summary copying src/pybel/struct/summary/graph_summary.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/summary copying src/pybel/struct/summary/provenance.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/summary copying src/pybel/struct/summary/node_summary.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/summary copying src/pybel/struct/summary/errors.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/summary copying src/pybel/struct/summary/edge_summary.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/summary copying src/pybel/struct/summary/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/summary creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/query copying src/pybel/struct/query/selection.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/query copying src/pybel/struct/query/seeding.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/query copying src/pybel/struct/query/query.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/query copying src/pybel/struct/query/exc.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/query copying src/pybel/struct/query/constants.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/query copying src/pybel/struct/query/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/query creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/pipeline copying src/pybel/struct/pipeline/pipeline.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/pipeline copying src/pybel/struct/pipeline/exc.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/pipeline copying src/pybel/struct/pipeline/decorators.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/pipeline copying src/pybel/struct/pipeline/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/pipeline creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation copying src/pybel/struct/mutation/utils.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation copying src/pybel/struct/mutation/transfer.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation copying src/pybel/struct/mutation/metadata.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation copying src/pybel/struct/mutation/induction_expansion.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation copying src/pybel/struct/mutation/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/grouping copying src/pybel/struct/grouping/utils.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/grouping copying src/pybel/struct/grouping/provenance.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/grouping copying src/pybel/struct/grouping/annotations.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/grouping copying src/pybel/struct/grouping/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/grouping creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters copying src/pybel/struct/filters/utils.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters copying src/pybel/struct/filters/node_selection.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters copying src/pybel/struct/filters/node_predicates.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters copying src/pybel/struct/filters/node_predicate_builders.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters copying src/pybel/struct/filters/node_filters.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters copying src/pybel/struct/filters/edge_predicates.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters copying src/pybel/struct/filters/edge_predicate_builders.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters copying src/pybel/struct/filters/edge_filters.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters copying src/pybel/struct/filters/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/inference copying src/pybel/struct/mutation/inference/protein_rna_origins.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/inference copying src/pybel/struct/mutation/inference/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/inference creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction copying src/pybel/struct/mutation/induction/utils.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction copying src/pybel/struct/mutation/induction/upstream.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction copying src/pybel/struct/mutation/induction/random_subgraph.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction copying src/pybel/struct/mutation/induction/paths.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction copying src/pybel/struct/mutation/induction/neighborhood.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction copying src/pybel/struct/mutation/induction/citation.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction copying src/pybel/struct/mutation/induction/annotations.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction copying src/pybel/struct/mutation/induction/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/expansion copying src/pybel/struct/mutation/expansion/upstream.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/expansion copying src/pybel/struct/mutation/expansion/neighborhood.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/expansion copying src/pybel/struct/mutation/expansion/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/expansion creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/deletion copying src/pybel/struct/mutation/deletion/protein_rna_origins.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/deletion copying src/pybel/struct/mutation/deletion/deletion.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/deletion copying src/pybel/struct/mutation/deletion/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/deletion creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/collapse copying src/pybel/struct/mutation/collapse/protein_rna_origins.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/collapse copying src/pybel/struct/mutation/collapse/collapse.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/collapse copying src/pybel/struct/mutation/collapse/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/collapse creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/definitions copying src/pybel/resources/definitions/write_utils.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/definitions copying src/pybel/resources/definitions/namespace.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/definitions copying src/pybel/resources/definitions/definitions.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/definitions copying src/pybel/resources/definitions/annotation.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/definitions copying src/pybel/resources/definitions/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/definitions creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers copying src/pybel/parser/modifiers/variant.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers copying src/pybel/parser/modifiers/truncation.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers copying src/pybel/parser/modifiers/protein_substitution.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers copying src/pybel/parser/modifiers/protein_modification.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers copying src/pybel/parser/modifiers/location.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers copying src/pybel/parser/modifiers/gene_substitution.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers copying src/pybel/parser/modifiers/gene_modification.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers copying src/pybel/parser/modifiers/fusion.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers copying src/pybel/parser/modifiers/fragment.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers copying src/pybel/parser/modifiers/constants.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers copying src/pybel/parser/modifiers/__init__.py -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers running egg_info creating src/PyBEL.egg-info writing src/PyBEL.egg-info/PKG-INFO writing dependency_links to src/PyBEL.egg-info/dependency_links.txt writing entry points to src/PyBEL.egg-info/entry_points.txt writing requirements to src/PyBEL.egg-info/requires.txt writing top-level names to src/PyBEL.egg-info/top_level.txt writing manifest file 'src/PyBEL.egg-info/SOURCES.txt' reading manifest file 'src/PyBEL.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'scripts' warning: no files found matching '*.bel' under directory 'src/pybel/testing/bel' warning: no files found matching '*.belanno' under directory 'src/pybel/testing/belanno' warning: no files found matching '*.belns' under directory 'src/pybel/testing/belns' warning: no previously-included files matching '*.py[cod]' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.dylib' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.gpickle' found anywhere in distribution warning: no previously-included files found matching '.bumpversion.cfg' writing manifest file 'src/PyBEL.egg-info/SOURCES.txt' creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/bel copying src/pybel/testing/resources/bel/Cytotoxic T-cell Signaling-2.0-Hs.json -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/bel copying src/pybel/testing/resources/bel/isolated.bel -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/bel copying src/pybel/testing/resources/bel/misordered.bel -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/bel copying src/pybel/testing/resources/bel/slushy.bel -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/bel copying src/pybel/testing/resources/bel/test_bel.bel -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/bel copying src/pybel/testing/resources/bel/thorough.bel -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/bel creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belanno copying src/pybel/testing/resources/belanno/cell-line.belanno -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belanno copying src/pybel/testing/resources/belanno/confidence-1.0.0.belanno -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belanno copying src/pybel/testing/resources/belanno/mesh-diseases.belanno -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belanno copying src/pybel/testing/resources/belanno/species-taxonomy-id.belanno -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belanno copying src/pybel/testing/resources/belanno/test_an_1.belanno -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belanno creating /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns copying src/pybel/testing/resources/belns/chebi.belns -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns copying src/pybel/testing/resources/belns/disease-ontology.belns -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns copying src/pybel/testing/resources/belns/go-biological-process.belns -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns copying src/pybel/testing/resources/belns/go-cellular-component.belns -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns copying src/pybel/testing/resources/belns/hgnc-human-genes.belns -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns copying src/pybel/testing/resources/belns/mesh-diseases.belns -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns copying src/pybel/testing/resources/belns/test_nocache.belns -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns copying src/pybel/testing/resources/belns/test_ns_1.belns -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns copying src/pybel/testing/resources/belns/test_ns_1_updated.belns -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns copying src/pybel/testing/resources/belns/test_ns_2.belns -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns copying src/pybel/testing/resources/belns/test_ns_empty.belns -> /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns dh_auto_test -O--buildsystem=pybuild I: pybuild base:217: cd /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build; python3.7 -m unittest discover -v test_abundance (tests.test_canonicalization.TestCanonicalize) Test canonicalization of abundances. ... ok test_bioprocess (tests.test_canonicalization.TestCanonicalize) ... ok test_canonicalize_fusion_range_dsl (tests.test_canonicalization.TestCanonicalize) Test canonicalization of enumerated fusion ranges. ... ok test_canonicalize_variant_dsl (tests.test_canonicalization.TestCanonicalize) Use the __str__ functions in the DSL to create BEL instead of external pybel.canonicalize. ... ok test_complex_abundance (tests.test_canonicalization.TestCanonicalize) ... ok test_composite_abundance (tests.test_canonicalization.TestCanonicalize) ... ok test_gene_fusion_specified (tests.test_canonicalization.TestCanonicalize) ... ok test_gene_reference (tests.test_canonicalization.TestCanonicalize) ... ok test_mirna_reference (tests.test_canonicalization.TestCanonicalize) ... ok test_named_complex_abundance (tests.test_canonicalization.TestCanonicalize) ... ok test_pathology (tests.test_canonicalization.TestCanonicalize) ... ok test_postpend_location_failure (tests.test_canonicalization.TestCanonicalize) ... ok test_protein_fragment (tests.test_canonicalization.TestCanonicalize) ... ok test_protein_pmod (tests.test_canonicalization.TestCanonicalize) ... ok test_protein_reference (tests.test_canonicalization.TestCanonicalize) ... ok test_reaction (tests.test_canonicalization.TestCanonicalize) ... ok test_rna_fusion_specified (tests.test_canonicalization.TestCanonicalize) ... ok test_rna_fusion_unspecified (tests.test_canonicalization.TestCanonicalize) ... ok test_canonicalize_edge_info (tests.test_canonicalization.TestCanonicalizeEdge) ... ok test_failure (tests.test_canonicalization.TestCanonicalizeEdge) ... ok test_subject_degradation_location (tests.test_canonicalization.TestCanonicalizeEdge) ... ok test_translocation (tests.test_canonicalization.TestCanonicalizeEdge) ... ok test_multiple_annotations (tests.test_canonicalization.TestSerializeBEL) ... ok test_simple (tests.test_canonicalization.TestSerializeBEL) Tests a scenario with a qualified edge, but no annotaitons ... ok test_single_annotation (tests.test_canonicalization.TestSerializeBEL) Tests a scenario with a qualified edge, but no annotaitons ... ok test_get_parent (tests.test_dsl.TestCentralDogma) Test the get_parent function in :class:`CentralDogmaAbundance`s. ... ok test_with_variants (tests.test_dsl.TestCentralDogma) Test the `with_variant` function in :class:`CentralDogmaAbundance`s. ... ok test_with_variants_list (tests.test_dsl.TestCentralDogma) Test the `with_variant` function in :class:`CentralDogmaAbundance`s. ... ok test_abundance_as_bel (tests.test_dsl.TestDSL) Test converting an abundance to BEL with a name that does not need quotation. ... ok test_abundance_as_bel_quoted (tests.test_dsl.TestDSL) Test converting an abundance to BEL with a name that needs quotation. ... ok test_add_identified_node (tests.test_dsl.TestDSL) Test what happens when a node with only an identifier is added to a graph. ... ok test_add_named_node (tests.test_dsl.TestDSL) Test adding a named node to a BEL graph. ... ok test_add_robust_node (tests.test_dsl.TestDSL) Test adding a node with both a name and identifier. ... ok test_as_tuple (tests.test_dsl.TestDSL) ... ok test_complex_with_name (tests.test_dsl.TestDSL) Test what happens with a named complex. ... ok test_gene_fusion (tests.test_dsl.TestDSL) Test serialization of a gene fusion to BEL with a explicit fusion ranges. ... ok test_gene_fusion_missing_explicit (tests.test_dsl.TestDSL) Test serialization of a gene fusion to BEL with an explicit missing fusion ranges. ... ok test_gene_fusion_missing_implicit (tests.test_dsl.TestDSL) Test serialization of a gene fusion to BEL with a implicit missing fusion ranges. ... ok test_missing_information (tests.test_dsl.TestDSL) Test that entity and abundance functions raise on missing name/identifier. ... ok test_str_has_both (tests.test_dsl.TestDSL) ... ok test_str_has_identifier (tests.test_dsl.TestDSL) ... ok test_example_bytes (tests.test_io.test_import.TestExampleInterchange) Test the round-trip through bytes. ... ok test_example_pickle (tests.test_io.test_import.TestExampleInterchange) Test the round-trip through a pickle. ... ok test_thorough_json (tests.test_io.test_import.TestExampleInterchange) Test the round-trip through node-link JSON. ... ok test_thorough_json_file (tests.test_io.test_import.TestExampleInterchange) Test the round-trip through a node-link JSON file. ... ok test_thorough_jsons (tests.test_io.test_import.TestExampleInterchange) Test the round-trip through a node-link JSON string. ... ok test_annotations (tests.test_io.test_import.TestFull) ... ok test_annotations_with_list (tests.test_io.test_import.TestFull) ... ok test_annotations_with_multilist (tests.test_io.test_import.TestFull) ... ok test_missing_citation (tests.test_io.test_import.TestFull) ... ok test_regex_match (tests.test_io.test_import.TestFull) ... ok test_regex_mismatch (tests.test_io.test_import.TestFull) ... ok test_semantic_failure (tests.test_io.test_import.TestFull) ... ok trunc() is deprecated. Re-encode with reference terminal amino acid in HGVS: p(HGNC:AKT1, trunc(40)) -> p(HGNC:CHCHD4, fusion(HGNC:AIFM1)) trunc() is deprecated. Re-encode with reference terminal amino acid in HGVS: p(HGNC:AKT1, trunc(40)) -> p(HGNC:CHCHD4, fusion(HGNC:AIFM1)) trunc() is deprecated. Re-encode with reference terminal amino acid in HGVS: p(HGNC:AKT1, trunc(40)) -> p(HGNC:CHCHD4, fusion(HGNC:AIFM1)) trunc() is deprecated. Re-encode with reference terminal amino acid in HGVS: p(HGNC:AKT1, trunc(40)) -> p(HGNC:CHCHD4, fusion(HGNC:AIFM1)) Line 0000003 - VersionFormatWarning: Version string "0.0" neither is a date like YYYYMMDD nor adheres to semantic versioning. See http://semver.org/ Missing required document metadata: ContactInfo Line 0000026 - MissingAnnotationKeyWarning: "STATEMENT_GROUP" is not set, so it can't be unset Line 0000029 - MissingAnnotationKeyWarning: "Citation" is not set, so it can't be unset Line 0000034 - CitationTooShortException: [pos:4] Citation is missing required fields: SET Citation = {"PubMed"} Line 0000037 - InvalidCitationType: [pos:4] "Pubmed" is not a valid citation type Line 0000040 - InvalidPubMedIdentifierWarning: [pos:4] "Fake Reference" is not a valid PubMed identifier Line 0000043 - MissingCitationException: Missing citation; can't add: p(HGNC:AKT1) -- p(HGNC:AKT2) Line 0000048 - MissingAnnotationKeyWarning: "Evidence" is not set, so it can't be unset Line 0000051 - MissingAnnotationKeyWarning: "PowerLevel" is not set, so it can't be unset Line 0000054 - MissingSupportWarning: Missing evidence; can't add: p(HGNC:AKT1) -- p(HGNC:AKT2) Line 0000059 - NakedNameWarning: [pos:18] "response to oxidative stress" should be qualified with a valid namespace Line 0000062 - UndefinedNamespaceWarning: "UNDEFINED" is not a defined namespace Line 0000065 - MissingNamespaceNameWarning: "maybe response to oxidative stress" is not in the GO namespace Line 0000068 - UndefinedAnnotationWarning: "UNDEFINED_ANNOTATION" is not defined Line 0000071 - MissingAnnotationKeyWarning: "TextLocation" is not set, so it can't be unset Line 0000074 - IllegalAnnotationValueWarning: "Nope" is not defined in the TextLocation annotation Line 0000077 - MissingAnnotationRegexWarning: "Nine Thousand" doesn't match the regex for PowerLevel annotation Line 0000080 - MissingNamespaceRegexWarning: "rs123123-A" doesn't match the regex for dbSNP namespace Line 0000083 - MalformedTranslocationWarning: [pos:4] Unqualified translocation: tloc(p(HGNC:AKT1)) -- p(HGNC:AKT2) [['Protein', 'HGNC', 'AKT1']] Line 0000086 - PlaceholderAminoAcidWarning: [pos:23] Placeholder amino acid found: X Line 0000089 - NestedRelationWarning: Nesting is not supported. Split this statement: p(HGNC:AKT1) -> (p(HGNC:AKT2) -> biologicalProcess(GO:"response to oxidative stress")) Line 0000092 - InvalidFunctionSemantic: BiologicalProcess HGNC:AKT1 should be encoded as one of: miRNA, RNA, Gene, Protein Line 0000098 - General Parser Failure: p(HGNC:TP53,sub(Q,R,248)) directlyDecreases transcriptionalActivity(proteinAbundance(HGNC:TP53)) test_isolated_compile (tests.test_io.test_import.TestInterchange) ... ok test_isolated_upgrade (tests.test_io.test_import.TestInterchange) ... ok test_misordered_compile (tests.test_io.test_import.TestInterchange) Test that non-citation clearing mode works. ... ok test_simple_compile (tests.test_io.test_import.TestInterchange) ... ok test_slushy (tests.test_io.test_import.TestInterchange) ... ok test_slushy_bytes (tests.test_io.test_import.TestInterchange) ... ok test_slushy_graphml (tests.test_io.test_import.TestInterchange) ... ok test_slushy_json (tests.test_io.test_import.TestInterchange) ... ok test_slushy_syntax_errors (tests.test_io.test_import.TestInterchange) ... ok test_thorough_bytes (tests.test_io.test_import.TestInterchange) ... ok test_thorough_csv (tests.test_io.test_import.TestInterchange) ... ok test_thorough_graphml (tests.test_io.test_import.TestInterchange) ... ok test_thorough_gsea (tests.test_io.test_import.TestInterchange) ... ok test_thorough_json (tests.test_io.test_import.TestInterchange) ... ok test_thorough_json_file (tests.test_io.test_import.TestInterchange) ... ok test_thorough_jsons (tests.test_io.test_import.TestInterchange) ... ok test_thorough_path (tests.test_io.test_import.TestInterchange) ... ok test_thorough_pickle (tests.test_io.test_import.TestInterchange) ... ok test_thorough_sif (tests.test_io.test_import.TestInterchange) ... ok test_thorough_upgrade (tests.test_io.test_import.TestInterchange) ... ok test_import_warning (tests.test_io.test_import.TestRandom) Tests an error is thrown when the version is set wrong ... ok test_jgif_interchange (tests.test_io.test_jgif.TestJgif) Tests data from CBN ... ok test_sanitize_1 (tests.test_manager.test_citation_utils.TestSanitizeDate) Test YYYY Mon DD. ... ok test_sanitize_2 (tests.test_manager.test_citation_utils.TestSanitizeDate) Test YYYY Mon. ... ok test_sanitize_3 (tests.test_manager.test_citation_utils.TestSanitizeDate) Test YYYY. ... ok test_sanitize_4 (tests.test_manager.test_citation_utils.TestSanitizeDate) Test YYYY Mon-Mon. ... ok test_sanitize_5 (tests.test_manager.test_citation_utils.TestSanitizeDate) Test YYYY Season. ... ok test_sanitize_6 (tests.test_manager.test_citation_utils.TestSanitizeDate) Test YYYY Mon DD-DD. ... ok test_sanitize_7 (tests.test_manager.test_citation_utils.TestSanitizeDate) Test YYYY Mon DD-Mon DD. ... ok test_sanitize_nope (tests.test_manager.test_citation_utils.TestSanitizeDate) Test failure. ... ok test_fail_connection_none (tests.test_manager.test_connection.TestInstantiation) Test that a None causes a huge error. ... ok test_instantiate_init (tests.test_manager.test_connection.TestInstantiation) Test what happens when no connection is specified for the normal constructor. ... ok test_instantiate_manager_connection_fail_too_many_keyword (tests.test_manager.test_connection.TestInstantiation) ... ok test_instantiate_manager_engine_fail_too_many_keywords (tests.test_manager.test_connection.TestInstantiation) ... ok test_instantiate_manager_engine_missing (tests.test_manager.test_connection.TestInstantiation) ... ok test_instantiate_manager_fail_positional (tests.test_manager.test_connection.TestInstantiation) ... ok test_instantiate_manager_keyword (tests.test_manager.test_connection.TestInstantiation) ... ok test_instantiate_manager_positional (tests.test_manager.test_connection.TestInstantiation) ... ok test_instantiate_manager_positional_with_keyword (tests.test_manager.test_connection.TestInstantiation) ... ok test_instantiate_manager_session_missing (tests.test_manager.test_connection.TestInstantiation) ... ok test_get_annotation_entries_no_data (tests.test_manager.test_manager_definitions.TestDefinitionManagers) Test that if there's no ANNOTATIONS entry in the data, it just returns none. ... ok test_insert_annotation (tests.test_manager.test_manager_definitions.TestDefinitionManagers) ... ok test_insert_namespace_nocache (tests.test_manager.test_manager_definitions.TestDefinitionManagers) Test that this namespace isn't cached ... /usr/lib/python3/dist-packages/sqlalchemy/sql/schema.py:1292: ResourceWarning: unclosed file <_io.FileIO name='/build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns/test_nocache.belns' mode='rb' closefd=True> self.constraints = set() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_insert_namespace_persistent (tests.test_manager.test_manager_definitions.TestDefinitionManagers) ... ok test_drop_all_networks (tests.test_manager.test_manager_drop.TestCascades) When all networks are dropped, make sure all the edges and network_edge mappings are gone too ... ok test_drop_edge (tests.test_manager.test_manager_drop.TestCascades) When an edge gets dropped, make sure the network doesn't have as many edges, but nodes get to stay ... ok test_drop_modification (tests.test_manager.test_manager_drop.TestCascades) Don't let this happen ... ok test_drop_namespace (tests.test_manager.test_manager_drop.TestCascades) ... ok test_drop_network_1 (tests.test_manager.test_manager_drop.TestCascades) When a network gets dropped, drop all of the edges if they don't appear in other networks ... ok test_drop_network_2 (tests.test_manager.test_manager_drop.TestCascades) When a network gets dropped, drop all of the edges if they don't appear in other networks ... ok test_drop_node (tests.test_manager.test_manager_drop.TestCascades) Makes sure that when a node gets dropped, its in-edges AND out-edges also do ... ok test_drop_property (tests.test_manager.test_manager_drop.TestCascades) Don't let this happen ... ok test_get_orphan_edges (tests.test_manager.test_manager_drop.TestCascades) ... ok test_simple (tests.test_manager.test_manager_drop.TestReconstituteNodeTuples) This test checks that the network can be added and dropped ... ok test_complex (tests.test_manager.test_manager_graph.TestAddNodeFromData) ... ok test_composite (tests.test_manager.test_manager_graph.TestAddNodeFromData) ... ok test_dimer_complex (tests.test_manager.test_manager_graph.TestAddNodeFromData) Tests what happens if a BEL statement complex(p(X), p(X)) is added ... ok test_fusion (tests.test_manager.test_manager_graph.TestAddNodeFromData) ... ok test_multiple_variants (tests.test_manager.test_manager_graph.TestAddNodeFromData) ... ok test_nested_complex (tests.test_manager.test_manager_graph.TestAddNodeFromData) Checks what happens if a theoretical BEL statement `complex(p(X), complex(p(Y), p(Z)))` is added ... ok test_reaction (tests.test_manager.test_manager_graph.TestAddNodeFromData) ... ok test_simple (tests.test_manager.test_manager_graph.TestAddNodeFromData) ... ok test_single_variant (tests.test_manager.test_manager_graph.TestAddNodeFromData) ... ok test_authors (tests.test_manager.test_manager_graph.TestEdgeStore) ... ok test_citations (tests.test_manager.test_manager_graph.TestEdgeStore) ... ok test_edges (tests.test_manager.test_manager_graph.TestEdgeStore) ... ok test_evidences (tests.test_manager.test_manager_graph.TestEdgeStore) ... ok test_nodes (tests.test_manager.test_manager_graph.TestEdgeStore) ... ok test_reconstitute (tests.test_manager.test_manager_graph.TestEdgeStore) ... ok test_get_or_create_author (tests.test_manager.test_manager_graph.TestEnsure) This tests getting or creating author with unicode characters ... ok test_get_or_create_citation (tests.test_manager.test_manager_graph.TestEnsure) ... ok test_get_or_create_citation_full (tests.test_manager.test_manager_graph.TestEnsure) ... ok test_get_or_create_evidence (tests.test_manager.test_manager_graph.TestEnsure) ... ok test_direct_has_namespace (tests.test_manager.test_manager_graph.TestEquivalentNodes) ... ok test_indirect_has_namespace (tests.test_manager.test_manager_graph.TestEquivalentNodes) ... ok test_triangle_has_namespace (tests.test_manager.test_manager_graph.TestEquivalentNodes) ... ok test_get_graph_missing (tests.test_manager.test_manager_graph.TestNetworkCache) ... ok test_get_network_missing (tests.test_manager.test_manager_graph.TestNetworkCache) ... ok test_reload (tests.test_manager.test_manager_graph.TestNetworkCache) Tests that a graph with the same name and version can't be added twice ... ok test_upload_with_tloc (tests.test_manager.test_manager_graph.TestNetworkCache) Test that the RAS translocation example graph can be uploaded. ... ok test_no_activity (tests.test_manager.test_manager_graph.TestNoAddNode) Test that when an uncached custom namespace is used in the activity on an edge, the edge doesn't get ... uncached namespace 3c801fa2-8140-4 in fusion() ok test_no_gene_modification (tests.test_manager.test_manager_graph.TestNoAddNode) Test that a gene node whose gmod variant is in the uncached namespaces set can't be added. ... uncached namespace 0da40ecd-025e-4 in fusion() could not create g(HGNC:YFG, gmod(2fce5ea3-dfd6-4:dummy)) because had an uncachable modification can not add node g(HGNC:YFG, gmod(2fce5ea3-dfd6-4:dummy)) ok test_no_location (tests.test_manager.test_manager_graph.TestNoAddNode) Test that when using a custom namespace in the location the edge doesn't get stored. ... uncached namespace bac425c9-7133-4 in loc() on line None ok test_no_node_fusion_3p (tests.test_manager.test_manager_graph.TestNoAddNode) Test that a fusion node whose 3P partner's namespace is in the uncached namespaces set can't be added. ... uncached namespace cf08a01e-6065-4 in fusion() could not create p(fus(HGNC:YFG, "?", 69be1078-ea2f-4:AKT1, "?")) because had an uncachable modification can not add node p(fus(HGNC:YFG, "?", 69be1078-ea2f-4:AKT1, "?")) ok test_no_node_fusion_5p (tests.test_manager.test_manager_graph.TestNoAddNode) Test that a node whose namespace is in the uncached namespaces set can't be added. ... uncached namespace 63325257-3fca-4 in fusion() could not create p(fus(5d0356e4-6295-4:YFG, "?", HGNC:YFG, "?")) because had an uncachable modification can not add node p(fus(5d0356e4-6295-4:YFG, "?", HGNC:YFG, "?")) ok test_no_node_name (tests.test_manager.test_manager_graph.TestNoAddNode) Test that a node whose namespace is in the uncached namespaces set can't be added. ... ok test_no_protein_modification (tests.test_manager.test_manager_graph.TestNoAddNode) Test that a protein node whose pmod variant is in the uncached namespaces set can't be added. ... uncached namespace 8786b5a8-f148-4 in fusion() could not create p(HGNC:YFG, pmod(5efc5bbd-1533-4:dummy)) because had an uncachable modification can not add node p(HGNC:YFG, pmod(5efc5bbd-1533-4:dummy)) ok test_no_translocation (tests.test_manager.test_manager_graph.TestNoAddNode) Test that a translocation using custom namespaces doesn't get stored. ... uncached namespace 4b0f8df6-5bb3-4 in tloc() on line None ok test_regex_lookup (tests.test_manager.test_manager_graph.TestNoAddNode) Test that regular expression nodes get love too. ... ok test_query_citation_by_reference (tests.test_manager.test_manager_graph.TestQuery) ... ok test_query_citation_by_type (tests.test_manager.test_manager_graph.TestQuery) ... ok test_query_edge_by_bel (tests.test_manager.test_manager_graph.TestQuery) ... ok test_query_edge_by_evidence_wildcard (tests.test_manager.test_manager_graph.TestQuery) ... ok test_query_edge_by_mixed (tests.test_manager.test_manager_graph.TestQuery) ... ok test_query_edge_by_mixed_no_result (tests.test_manager.test_manager_graph.TestQuery) ... ok test_query_edge_by_relation_wildcard (tests.test_manager.test_manager_graph.TestQuery) ... ok test_query_edge_by_source_function (tests.test_manager.test_manager_graph.TestQuery) ... ok test_query_edge_by_target_function (tests.test_manager.test_manager_graph.TestQuery) ... ok test_query_node_bel_1 (tests.test_manager.test_manager_graph.TestQuery) ... ok test_query_node_bel_2 (tests.test_manager.test_manager_graph.TestQuery) ... ok test_query_node_namespace_wildcard (tests.test_manager.test_manager_graph.TestQuery) ... ok test_query_node_type (tests.test_manager.test_manager_graph.TestQuery) ... ok test_query_node_type_missing (tests.test_manager.test_manager_graph.TestQuery) ... ok test_mixed_1 (tests.test_manager.test_manager_graph.TestReconstituteEdges) Test mixed having location and something else. ... ok test_mixed_2 (tests.test_manager.test_manager_graph.TestReconstituteEdges) Tests both subject and object activity with location information as well. ... ok test_object_activity_custom (tests.test_manager.test_manager_graph.TestReconstituteEdges) ... ok test_object_activity_default (tests.test_manager.test_manager_graph.TestReconstituteEdges) ... ok test_object_degradation (tests.test_manager.test_manager_graph.TestReconstituteEdges) ... ok test_subject_activity_custom (tests.test_manager.test_manager_graph.TestReconstituteEdges) ... ok test_subject_activity_default (tests.test_manager.test_manager_graph.TestReconstituteEdges) ... ok test_subject_degradation (tests.test_manager.test_manager_graph.TestReconstituteEdges) ... ok test_subject_location (tests.test_manager.test_manager_graph.TestReconstituteEdges) ... ok test_subject_translocation_custom_to_loc (tests.test_manager.test_manager_graph.TestReconstituteEdges) ... ok test_translocation_default (tests.test_manager.test_manager_graph.TestReconstituteEdges) This test checks that a translocation gets in the database properly ... ok test_complex (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) ... ok test_composite (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) ... ok test_fragment_specified (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) ... ok test_fragment_specified_end_only (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) ... ok test_fragment_specified_start_only (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) ... ok test_fragment_unspecified (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) ... ok test_fusion_specified (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) ... ok test_fusion_unspecified (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) ... ok test_gmod_custom (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) Tests a gene modification that uses a non-default namespace ... ok test_gmod_default (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) Tests a gene modification that uses the BEL default namespace ... ok test_hgvs (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) ... ok test_multiple_variants (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) ... ok test_nested_complex (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) ... ok test_pmod_custom_full (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) ... ok test_pmod_custom_simple (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) ... ok test_pmod_custom_with_residue (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) ... ok test_pmod_default_full (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) ... ok test_pmod_default_simple (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) ... ok test_pmod_default_with_residue (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) ... ok test_reaction (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) ... ok test_simple (tests.test_manager.test_manager_graph.TestReconstituteNodeTuples) ... ok test_insert_with_list_annotations (tests.test_manager.test_manager_graph.TestTemporaryInsertNetwork) This test checks that graphs that contain list annotations, which aren't cached, can be loaded properly ... ok test_citation (tests.test_manager.test_manager_model.TestModels) ... ok test_namespace_entry (tests.test_manager.test_manager_model.TestModels) ... ok test_namespace_pattern (tests.test_manager.test_manager_model.TestModels) ... ok test_namespace_url (tests.test_manager.test_manager_model.TestModels) ... ok test_dump (tests.test_manager.test_manager_model.TestNetwork) ... ok test_network (tests.test_manager.test_manager_model.TestNetwork) ... ok test_to_json (tests.test_manager.test_manager_model.TestNetwork) ... ok test_edge_existence (tests.test_manager.test_seeding.TestSeeding) ... ok test_namespace_existence (tests.test_manager.test_seeding.TestSeeding) ... ok test_namespace_existence_b (tests.test_manager.test_seeding.TestSeeding) ... ok test_namespace_existence_c (tests.test_manager.test_seeding.TestSeeding) ... ok test_network_existence (tests.test_manager.test_seeding.TestSeeding) ... ok test_seed_by_induction (tests.test_manager.test_seeding.TestSeeding) Test seeding by inducing over a list of nodes. ... ok test_seed_by_induction_raise (tests.test_manager.test_seeding.TestSeeding) Test that seeding by induction fails when an empty list is given. ... ok test_seed_by_induction_raise_length_one (tests.test_manager.test_seeding.TestSeeding) Test that seeding by induction fails when a list of length one is given. ... ok test_seed_by_neighbors (tests.test_manager.test_seeding.TestSeeding) Test seeding a graph by neighbors of a list of nodes. ... ok test_seed_by_pmid (tests.test_manager.test_seeding.TestSeeding) ... ok test_seed_by_pmid_no_result (tests.test_manager.test_seeding.TestSeeding) ... ok test_sialic_acid_in_node_store (tests.test_manager.test_seeding.TestSeeding) ... ok test_abundance (tests.test_parse.test_parse_bel.TestAbundance) Test short/long abundance name. ... ok test_abundance_with_location (tests.test_parse.test_parse_bel.TestAbundance) Test short/long abundance name and short/long location name. ... ok test_activity_bare (tests.test_parse.test_parse_bel.TestActivity) ... ok test_activity_legacy (tests.test_parse.test_parse_bel.TestActivity) Test BEL 1.0 style molecular activity annotation ... ok test_activity_on_listed_complex (tests.test_parse.test_parse_bel.TestActivity) ... ok test_activity_on_named_complex (tests.test_parse.test_parse_bel.TestActivity) ... ok test_activity_withMolecularActivityCustom (tests.test_parse.test_parse_bel.TestActivity) Tests activity modifier with molecular activity from custom namespaced ... ok test_activity_withMolecularActivityDefault (tests.test_parse.test_parse_bel.TestActivity) Tests activity modifier with molecular activity from default BEL namespace ... ok test_activity_withMolecularActivityDefaultLong (tests.test_parse.test_parse_bel.TestActivity) Tests activity modifier with molecular activity from custom namespaced ... ok test_kinase_activity_on_listed_complex (tests.test_parse.test_parse_bel.TestActivity) ... ok test_kinase_activity_on_named_complex (tests.test_parse.test_parse_bel.TestActivity) ... ok test_231a (tests.test_parse.test_parse_bel.TestBiologicalProcess) ... ok test_complex_list_long (tests.test_parse.test_parse_bel.TestComplex) ... ok test_complex_list_short (tests.test_parse.test_parse_bel.TestComplex) ... ok test_named_complex_singleton (tests.test_parse.test_parse_bel.TestComplex) ... ok test_213a (tests.test_parse.test_parse_bel.TestComposite) Evidence: ``IL-6 and IL-23 synergistically induce Th17 differentiation ... ok test_214a (tests.test_parse.test_parse_bel.TestGene) ... ok test_214b (tests.test_parse.test_parse_bel.TestGene) ... ok test_214c (tests.test_parse.test_parse_bel.TestGene) Test variant ... ok test_214d (tests.test_parse.test_parse_bel.TestGene) Test BEL 1.0 gene substitution ... ok test_gene_fusion_1 (tests.test_parse.test_parse_bel.TestGene) ... ok test_gene_fusion_2 (tests.test_parse.test_parse_bel.TestGene) ... ok test_gene_fusion_3 (tests.test_parse.test_parse_bel.TestGene) ... ok test_gene_fusion_legacy_1 (tests.test_parse.test_parse_bel.TestGene) ... ok test_gene_fusion_legacy_2 (tests.test_parse.test_parse_bel.TestGene) ... ok test_gene_variant_chromosome (tests.test_parse.test_parse_bel.TestGene) 2.2.2 chromosome ... ok test_gene_variant_deletion (tests.test_parse.test_parse_bel.TestGene) 2.2.2 gene-coding DNA reference sequence ... ok test_gene_variant_snp (tests.test_parse.test_parse_bel.TestGene) 2.2.2 SNP ... ok test_gmod (tests.test_parse.test_parse_bel.TestGene) Test Gene Modification ... ok test_multiple_variants (tests.test_parse.test_parse_bel.TestGene) Test multiple variants ... ok test_variant_location (tests.test_parse.test_parse_bel.TestGene) Test BEL 1.0 gene substitution with location tag ... ok test_mirna_location (tests.test_parse.test_parse_bel.TestMiRNA) ... ok test_mirna_variant (tests.test_parse.test_parse_bel.TestMiRNA) ... ok test_mirna_variant_location (tests.test_parse.test_parse_bel.TestMiRNA) ... ok test_short (tests.test_parse.test_parse_bel.TestMiRNA) ... ok test_232a (tests.test_parse.test_parse_bel.TestPathology) ... ok test_ensure_no_dup_edges (tests.test_parse.test_parse_bel.TestProtein) Ensure node and edges aren't added twice, even if from different statements and has origin completion ... ok test_multiple_variants (tests.test_parse.test_parse_bel.TestProtein) ... ok test_protein_fragment_descriptor (tests.test_parse.test_parse_bel.TestProtein) 2.2.3 fragment with unknown start/stop and a descriptor ... ok test_protein_fragment_known (tests.test_parse.test_parse_bel.TestProtein) 2.2.3 fragment with known start/stop ... ok test_protein_fragment_unboundTerminal (tests.test_parse.test_parse_bel.TestProtein) 2.2.3 carboxyl-terminal fragment of unknown length ... ok test_protein_fragment_unbounded (tests.test_parse.test_parse_bel.TestProtein) 2.2.3 amino-terminal fragment of unknown length ... ok test_protein_fragment_unknown (tests.test_parse.test_parse_bel.TestProtein) 2.2.3 fragment with unknown start/stop ... ok test_protein_fusion_1 (tests.test_parse.test_parse_bel.TestProtein) ... ok test_protein_fusion_legacy_1 (tests.test_parse.test_parse_bel.TestProtein) ... ok test_protein_fusion_legacy_2 (tests.test_parse.test_parse_bel.TestProtein) ... ok test_protein_pmod_1 (tests.test_parse.test_parse_bel.TestProtein) 2.2.1 Test default BEL namespace and 1-letter amino acid code: ... ok test_protein_pmod_2 (tests.test_parse.test_parse_bel.TestProtein) 2.2.1 Test default BEL namespace and 3-letter amino acid code: ... ok test_protein_pmod_3 (tests.test_parse.test_parse_bel.TestProtein) 2.2.1 Test PSI-MOD namespace and 3-letter amino acid code: ... ok test_protein_pmod_4 (tests.test_parse.test_parse_bel.TestProtein) 2.2.1 Test HRAS palmitoylated at an unspecified residue. Default BEL namespace ... ok test_protein_trunc_1 (tests.test_parse.test_parse_bel.TestProtein) ... trunc() is deprecated. Re-encode with reference terminal amino acid in HGVS: p(HGNC:AKT1, trunc(40)) ok test_protein_trunc_2 (tests.test_parse.test_parse_bel.TestProtein) ... ok test_protein_trunc_3 (tests.test_parse.test_parse_bel.TestProtein) ... ok test_protein_variant_deletion (tests.test_parse.test_parse_bel.TestProtein) 2.2.2 deletion ... ok test_protein_variant_reference (tests.test_parse.test_parse_bel.TestProtein) 2.2.2 Test reference allele ... ok test_protein_variant_substitution (tests.test_parse.test_parse_bel.TestProtein) 2.2.2 Test substitution ... ok test_protein_variant_unspecified (tests.test_parse.test_parse_bel.TestProtein) 2.2.2 Test unspecified variant ... ok test_protein_with_location (tests.test_parse.test_parse_bel.TestProtein) ... ok test_reference (tests.test_parse.test_parse_bel.TestProtein) ... ok test_multiple_variants (tests.test_parse.test_parse_bel.TestRna) Test multiple variants. ... ok test_reference (tests.test_parse.test_parse_bel.TestRna) ... ok test_rna_fusion_known_breakpoints (tests.test_parse.test_parse_bel.TestRna) Test RNA fusions (2.6.1) with known breakpoints (2.6.1). ... ok test_rna_fusion_legacy_1 (tests.test_parse.test_parse_bel.TestRna) ... ok test_rna_fusion_unspecified_breakpoints (tests.test_parse.test_parse_bel.TestRna) Test RNA fusions (2.6.1) with unspecified breakpoints. ... ok test_rna_variant_codingReference (tests.test_parse.test_parse_bel.TestRna) 2.2.2 RNA coding reference sequence ... ok test_lenient_semantic_no_failure (tests.test_parse.test_parse_bel.TestSemantics) ... ok test_clearance (tests.test_parse.test_parse_bel.TestTransformation) Tests that after adding things, the graph and parser can be cleared properly ... ok test_degradation_long (tests.test_parse.test_parse_bel.TestTransformation) Test the long form of degradation works ... ok test_degredation_short (tests.test_parse.test_parse_bel.TestTransformation) Test the short form of degradation works ... ok test_reaction_1 (tests.test_parse.test_parse_bel.TestTransformation) ... ok test_reaction_2 (tests.test_parse.test_parse_bel.TestTransformation) ... ok test_translocation_bare (tests.test_parse.test_parse_bel.TestTransformation) translocation example ... ok test_translocation_secretion (tests.test_parse.test_parse_bel.TestTransformation) cell secretion short form ... ok test_translocation_standard (tests.test_parse.test_parse_bel.TestTransformation) translocation example ... ok test_translocation_surface (tests.test_parse.test_parse_bel.TestTransformation) cell surface expression short form ... ok test_unqualified_translocation_strict (tests.test_parse.test_parse_bel.TestTransformation) Fail on an improperly written single argument translocation ... ok test_unqualified_translocation_relation (tests.test_parse.test_parse_bel.TestTranslocationPermissive) Test translocation in object. ... ok test_unqualified_translocation_single (tests.test_parse.test_parse_bel.TestTranslocationPermissive) translocation example ... ok test_location_undefined_name (tests.test_parse.test_parse_bel_relations.TestCustom) ... ok test_location_undefined_namespace (tests.test_parse.test_parse_bel_relations.TestCustom) ... ok test_tloc_undefined_name (tests.test_parse.test_parse_bel_relations.TestCustom) ... ok test_tloc_undefined_namespace (tests.test_parse.test_parse_bel_relations.TestCustom) ... ok test_cnc_with_subject_variant (tests.test_parse.test_parse_bel_relations.TestRelations) Test a causesNoChange relationship with a variant in the subject. ... ok test_component_list (tests.test_parse.test_parse_bel_relations.TestRelations) ... ok test_decreases (tests.test_parse.test_parse_bel_relations.TestRelations) Test parsing a decreases relation with a reaction. ... ok test_directlyDecreases (tests.test_parse.test_parse_bel_relations.TestRelations) ... ok test_directlyDecreases_annotationExpansion (tests.test_parse.test_parse_bel_relations.TestRelations) ... ok test_directlyIncreases_withTlocObject (tests.test_parse.test_parse_bel_relations.TestRelations) Test translocation in object. See BEL 2.0 specification ... ok test_ensure_no_dup_nodes (tests.test_parse.test_parse_bel_relations.TestRelations) Ensure node isn't added twice, even if from different statements ... ok test_equivalentTo (tests.test_parse.test_parse_bel_relations.TestRelations) ... ok test_extra_1 (tests.test_parse.test_parse_bel_relations.TestRelations) ... ok test_has_reaction_component (tests.test_parse.test_parse_bel_relations.TestRelations) ... ok test_has_variant (tests.test_parse.test_parse_bel_relations.TestRelations) ... ok test_increases (tests.test_parse.test_parse_bel_relations.TestRelations) Test composite in subject. See BEL 2.0 specification ... ok test_isA (tests.test_parse.test_parse_bel_relations.TestRelations) ... ok test_label_1 (tests.test_parse.test_parse_bel_relations.TestRelations) ... ok test_member_list (tests.test_parse.test_parse_bel_relations.TestRelations) ... ok test_negativeCorrelation_withObjectVariant (tests.test_parse.test_parse_bel_relations.TestRelations) ... ok test_nested_failure (tests.test_parse.test_parse_bel_relations.TestRelations) ... ok test_nested_lenient (tests.test_parse.test_parse_bel_relations.TestRelations) 3.1 \ Test nested statement ... ok test_orthologous (tests.test_parse.test_parse_bel_relations.TestRelations) ... ok test_partOf (tests.test_parse.test_parse_bel_relations.TestRelations) ... ok test_positiveCorrelation_withSelfReferential (tests.test_parse.test_parse_bel_relations.TestRelations) ... ok test_predicate_failure (tests.test_parse.test_parse_bel_relations.TestRelations) Checks that if there's a problem with the relation/object, that an error gets thrown ... ok test_raise_on_relabel (tests.test_parse.test_parse_bel_relations.TestRelations) ... ok test_rateLimitingStepOf_subjectActivity (tests.test_parse.test_parse_bel_relations.TestRelations) 3.1.5 http://openbel.org/language/web/version_2.0/bel_specification_version_2.0.html#_ratelimitingstepof ... ok test_regulates_with_multiple_nnotations (tests.test_parse.test_parse_bel_relations.TestRelations) ... ok test_singleton (tests.test_parse.test_parse_bel_relations.TestRelations) Test singleton composite in subject. ... ok test_subProcessOf (tests.test_parse.test_parse_bel_relations.TestRelations) ... ok test_transcription (tests.test_parse.test_parse_bel_relations.TestRelations) ... ok test_translation (tests.test_parse.test_parse_bel_relations.TestRelations) ... ok test_descriptor_quoted (tests.test_parse.test_parse_bel_variants.TestFragmentParser) fragment with unknown start/stop and a descriptor ... ok test_descriptor_unquoted (tests.test_parse.test_parse_bel_variants.TestFragmentParser) fragment with unknown start/stop and a descriptor ... ok test_known_length_quotes (tests.test_parse.test_parse_bel_variants.TestFragmentParser) test known length ... ok test_known_length_unquoted (tests.test_parse.test_parse_bel_variants.TestFragmentParser) test known length ... ok test_unknown_length_quoted (tests.test_parse.test_parse_bel_variants.TestFragmentParser) amino-terminal fragment of unknown length ... ok test_unknown_length_unquoted (tests.test_parse.test_parse_bel_variants.TestFragmentParser) amino-terminal fragment of unknown length ... ok test_unknown_start_stop_quoted (tests.test_parse.test_parse_bel_variants.TestFragmentParser) fragment with unknown start/stop ... ok test_unknown_start_stop_unquoted (tests.test_parse.test_parse_bel_variants.TestFragmentParser) fragment with unknown start/stop ... ok test_rna_fusion_known_breakpoints (tests.test_parse.test_parse_bel_variants.TestFusionParser) RNA abundance of fusion with known breakpoints ... ok test_rna_fusion_specified_fuzzy_breakpoints (tests.test_parse.test_parse_bel_variants.TestFusionParser) RNA abundance of fusion with unspecified breakpoints ... ok test_rna_fusion_specified_one_fuzzy_breakpoint (tests.test_parse.test_parse_bel_variants.TestFusionParser) RNA abundance of fusion with unspecified breakpoints ... ok test_rna_fusion_unspecified_breakpoints (tests.test_parse.test_parse_bel_variants.TestFusionParser) RNA abundance of fusion with unspecified breakpoints ... ok test_dsl (tests.test_parse.test_parse_bel_variants.TestGeneModification) ... ok test_gmod_long (tests.test_parse.test_parse_bel_variants.TestGeneModification) ... ok test_gmod_short (tests.test_parse.test_parse_bel_variants.TestGeneModification) ... ok test_gmod_unabbreviated (tests.test_parse.test_parse_bel_variants.TestGeneModification) ... ok test_gsub (tests.test_parse.test_parse_bel_variants.TestGeneSubstitutionParser) ... ok test_chromosome_1 (tests.test_parse.test_parse_bel_variants.TestHGVSParser) ... ok test_chromosome_2 (tests.test_parse.test_parse_bel_variants.TestHGVSParser) ... ok test_frameshift (tests.test_parse.test_parse_bel_variants.TestHGVSParser) ... ok test_protein_del (tests.test_parse.test_parse_bel_variants.TestHGVSParser) ... ok test_protein_del_quoted (tests.test_parse.test_parse_bel_variants.TestHGVSParser) ... ok test_protein_mut (tests.test_parse.test_parse_bel_variants.TestHGVSParser) ... ok test_protein_trunc_legacy (tests.test_parse.test_parse_bel_variants.TestHGVSParser) ... ok test_protein_trunc_triple (tests.test_parse.test_parse_bel_variants.TestHGVSParser) ... ok test_rna_del (tests.test_parse.test_parse_bel_variants.TestHGVSParser) ... ok test_snp (tests.test_parse.test_parse_bel_variants.TestHGVSParser) ... ok test_unspecified (tests.test_parse.test_parse_bel_variants.TestHGVSParser) ... ok test_a (tests.test_parse.test_parse_bel_variants.TestLocation) ... ok test_bel_name (tests.test_parse.test_parse_bel_variants.TestPmod) ... ok test_full (tests.test_parse.test_parse_bel_variants.TestPmod) ... ok test_full_with_non_standard_namespace (tests.test_parse.test_parse_bel_variants.TestPmod) ... ok test_residue (tests.test_parse.test_parse_bel_variants.TestPmod) ... ok test_psub_1 (tests.test_parse.test_parse_bel_variants.TestProteinSubstitution) ... ok test_psub_2 (tests.test_parse.test_parse_bel_variants.TestProteinSubstitution) ... ok test_trunc_1 (tests.test_parse.test_parse_bel_variants.TestTruncationParser) ... trunc() is deprecated. Re-encode with reference terminal amino acid in HGVS: trunc(40) ok test_citation_invalid_date (tests.test_parse.test_parse_control.TestParseControl2) ... ok test_citation_short (tests.test_parse.test_parse_control.TestParseControl2) ... ok test_citation_too_long (tests.test_parse.test_parse_control.TestParseControl2) ... ok test_citation_too_short (tests.test_parse.test_parse_control.TestParseControl2) ... ok test_citation_with_empty_comment (tests.test_parse.test_parse_control.TestParseControl2) ... ok test_custom_annotation (tests.test_parse.test_parse_control.TestParseControl2) ... ok test_custom_annotation_list (tests.test_parse.test_parse_control.TestParseControl2) ... ok test_double (tests.test_parse.test_parse_control.TestParseControl2) ... ok test_double_with_space (tests.test_parse.test_parse_control.TestParseControl2) Same as test_double, but has a space between the comma and next entry ... ok test_evidence (tests.test_parse.test_parse_control.TestParseControl2) ... ok test_overwrite_evidence (tests.test_parse.test_parse_control.TestParseControl2) ... ok test_reset_citation (tests.test_parse.test_parse_control.TestParseControl2) ... ok test_set_regex (tests.test_parse.test_parse_control.TestParseControl2) ... ok test_set_statement_group (tests.test_parse.test_parse_control.TestParseControl2) Tests a statement group gets set properly ... ok test_unset_custom (tests.test_parse.test_parse_control.TestParseControl2) ... ok test_unset_evidence (tests.test_parse.test_parse_control.TestParseControl2) ... ok test_custom_annotation_list_withInvalid (tests.test_parse.test_parse_control.TestParseControlSetStatementErrors) ... ok test_custom_value_failure (tests.test_parse.test_parse_control.TestParseControlSetStatementErrors) Tests what happens for a valid annotation key, but an invalid value ... ok test_invalid_citation_type (tests.test_parse.test_parse_control.TestParseControlSetStatementErrors) ... ok test_invalid_pmid (tests.test_parse.test_parse_control.TestParseControlSetStatementErrors) ... ok test_invalid_pmid_short (tests.test_parse.test_parse_control.TestParseControlSetStatementErrors) ... ok test_regex_failure (tests.test_parse.test_parse_control.TestParseControlSetStatementErrors) ... ok test_set_missing_statement (tests.test_parse.test_parse_control.TestParseControlSetStatementErrors) ... ok test_unset_invalid_command (tests.test_parse.test_parse_control.TestParseControlUnsetStatementErrors) ... ok test_unset_list_compact (tests.test_parse.test_parse_control.TestParseControlUnsetStatementErrors) Tests unsetting an annotation list, without spaces in it ... ok test_unset_list_spaced (tests.test_parse.test_parse_control.TestParseControlUnsetStatementErrors) Tests unsetting an annotation list, with spaces in it ... ok test_unset_missing_citation (tests.test_parse.test_parse_control.TestParseControlUnsetStatementErrors) ... ok test_unset_missing_command (tests.test_parse.test_parse_control.TestParseControlUnsetStatementErrors) ... ok test_unset_missing_evidence (tests.test_parse.test_parse_control.TestParseControlUnsetStatementErrors) ... ok test_unset_missing_evidence_with_citation (tests.test_parse.test_parse_control.TestParseControlUnsetStatementErrors) Tests that an evidence can't be unset without a citation ... ok test_unset_missing_statement_group (tests.test_parse.test_parse_control.TestParseControlUnsetStatementErrors) ... ok test_111 (tests.test_parse.test_parse_control.TestParseEvidence) ... ok test_131 (tests.test_parse.test_parse_control.TestParseEvidence) ... ok test_132 (tests.test_parse.test_parse_control.TestParseEvidence) ... ok test_133 (tests.test_parse.test_parse_control.TestParseEvidence) ... ok test_141 (tests.test_parse.test_parse_control.TestParseEvidence) ... ok test_142 (tests.test_parse.test_parse_control.TestParseEvidence) ... ok test_parser_double (tests.test_parse.test_parse_control.TestSetCitation) ... ok test_parser_double_spaced (tests.test_parse.test_parse_control.TestSetCitation) ... ok test_parser_triple (tests.test_parse.test_parse_control.TestSetCitation) ... ok test_parser_triple_spaced (tests.test_parse.test_parse_control.TestSetCitation) ... ok test_invalid_1 (tests.test_parse.test_parse_identifier.TestIdentifierParser) ... ok test_invalid_2 (tests.test_parse.test_parse_identifier.TestIdentifierParser) ... ok test_invalid_3 (tests.test_parse.test_parse_identifier.TestIdentifierParser) ... ok test_invalid_4 (tests.test_parse.test_parse_identifier.TestIdentifierParser) ... ok test_valid_1 (tests.test_parse.test_parse_identifier.TestIdentifierParser) ... ok test_valid_2 (tests.test_parse.test_parse_identifier.TestIdentifierParser) ... ok test_not_in_defaultNs (tests.test_parse.test_parse_identifier.TestNamespaceParserDefault) ... ok test_valid_1 (tests.test_parse.test_parse_identifier.TestNamespaceParserDefault) ... ok test_valid_2 (tests.test_parse.test_parse_identifier.TestNamespaceParserDefault) ... ok test_valid_3 (tests.test_parse.test_parse_identifier.TestNamespaceParserDefault) ... ok test_invalid_1 (tests.test_parse.test_parse_identifier.TestNamespaceParserLenient) ... ok test_invalid_2 (tests.test_parse.test_parse_identifier.TestNamespaceParserLenient) ... ok test_not_invalid_3 (tests.test_parse.test_parse_identifier.TestNamespaceParserLenient) ... ok test_not_invalid_4 (tests.test_parse.test_parse_identifier.TestNamespaceParserLenient) ... ok test_valid_1 (tests.test_parse.test_parse_identifier.TestNamespaceParserLenient) ... ok test_valid_2 (tests.test_parse.test_parse_identifier.TestNamespaceParserLenient) ... ok test_annotation_name_persistience_1 (tests.test_parse.test_parse_metadata.TestParseMetadata) Tests that an annotation defined by a URL can't be overwritten by a definition by a list ... ok test_annotation_name_persistience_2 (tests.test_parse.test_parse_metadata.TestParseMetadata) Tests that an annotation defined by a list can't be overwritten by a definition by URL ... ok test_control_compound (tests.test_parse.test_parse_metadata.TestParseMetadata) ... ok test_define_namespace_regex (tests.test_parse.test_parse_metadata.TestParseMetadata) ... ok test_document_metadata_exception (tests.test_parse.test_parse_metadata.TestParseMetadata) ... ok test_namespace_name_persistience (tests.test_parse.test_parse_metadata.TestParseMetadata) Tests that a namespace defined by a URL can't be overwritten by a definition by another URL ... ok test_namespace_nocache (tests.test_parse.test_parse_metadata.TestParseMetadata) Checks namespace is loaded into parser but not cached ... ok test_not_semantic_version (tests.test_parse.test_parse_metadata.TestParseMetadata) ... /usr/lib/python3.7/traceback.py:357: ResourceWarning: unclosed file <_io.FileIO name='/build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns/test_nocache.belns' mode='rb' closefd=True> filename, lineno, name, lookup_line=False, locals=f_locals)) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_parse_annotation_pattern (tests.test_parse.test_parse_metadata.TestParseMetadata) ... ok test_parse_annotation_url_file (tests.test_parse.test_parse_metadata.TestParseMetadata) Tests parsing an annotation by file URL ... ok test_parse_document (tests.test_parse.test_parse_metadata.TestParseMetadata) ... /usr/lib/python3/dist-packages/sqlalchemy/orm/query.py:3928: ResourceWarning: unclosed file <_io.FileIO name='/build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belanno/test_an_1.belanno' mode='rb' closefd=True> polymorphic_discriminator=self._polymorphic_discriminator, ResourceWarning: Enable tracemalloc to get the object allocation traceback Tried to overwrite metadata: Name ok test_parse_namespace_url_file (tests.test_parse.test_parse_metadata.TestParseMetadata) Tests parsing a namespace by file URL ... ok test_squiggly_filepath (tests.test_parse.test_parse_metadata.TestParseMetadata) ... skipped 'Need local files to test local files' test_underscore (tests.test_parse.test_parse_metadata.TestParseMetadata) Tests that an underscore is a valid character in an annotation name ... ok test_parts (tests.test_parse.test_parse_metadata.TestSplitLines) ... ok test_a (tests.test_parse.test_parse_utils.TestSanitize) ... ok test_b (tests.test_parse.test_parse_utils.TestSanitize) ... ok test_c (tests.test_parse.test_parse_utils.TestSanitize) ... ok test_d (tests.test_parse.test_parse_utils.TestSanitize) Test forgotten delimiters ... ok test_e (tests.test_parse.test_parse_utils.TestSanitize) ... ok test_f (tests.test_parse.test_parse_utils.TestSanitize) ... ok test_quote (tests.test_parse.test_parse_utils.TestSanitize) ... ok test_dict_matches_1 (tests.test_parse.test_parse_utils.TestSubdictMatching) ... ok test_dict_matches_2 (tests.test_parse.test_parse_utils.TestSubdictMatching) ... ok test_dict_matches_3 (tests.test_parse.test_parse_utils.TestSubdictMatching) ... ok test_dict_matches_4 (tests.test_parse.test_parse_utils.TestSubdictMatching) ... ok test_dict_matches_5 (tests.test_parse.test_parse_utils.TestSubdictMatching) ... ok test_dict_matches_6 (tests.test_parse.test_parse_utils.TestSubdictMatching) ... ok test_dict_matches_7_exact (tests.test_parse.test_parse_utils.TestSubdictMatching) Test a partial match. ... ok test_dict_matches_7_partial (tests.test_parse.test_parse_utils.TestSubdictMatching) Tests a partial match ... ok test_dict_matches_8_partial (tests.test_parse.test_parse_utils.TestSubdictMatching) Test a partial match. ... ok test_dict_matches_graph (tests.test_parse.test_parse_utils.TestSubdictMatching) Test matching a graph. ... ok test_build_author_inclusion_filter (tests.test_struct.test_filters.test_edge_predicate_builders.TestEdgePredicateBuilders) Test building a predicate for a single author. ... ok test_build_author_set_inclusion_filter (tests.test_struct.test_filters.test_edge_predicate_builders.TestEdgePredicateBuilders) Test building a predicate for multiple authors. ... ok test_build_pmid_inclusion_filter (tests.test_struct.test_filters.test_edge_predicate_builders.TestEdgePredicateBuilders) Test building a predicate for a single PubMed identifier. ... ok test_build_pmid_set_inclusion_filter (tests.test_struct.test_filters.test_edge_predicate_builders.TestEdgePredicateBuilders) Test building a predicate for multiple PubMed identifiers. ... ok test_has_pathology (tests.test_struct.test_filters.test_edge_predicates.TestEdgePredicates) Test for checking edges that have a causal pathology. ... ok test_empty_list_error (tests.test_struct.test_filters.test_node_predicate_builders.TestFunctionInclusionFilterBuilder) Test that a value error is thrown for an empty list. ... ok test_multiple (tests.test_struct.test_filters.test_node_predicate_builders.TestFunctionInclusionFilterBuilder) Test building a node predicate with multiple functions. ... ok test_single (tests.test_struct.test_filters.test_node_predicate_builders.TestFunctionInclusionFilterBuilder) Test building a node predicate with a single function. ... ok test_type_error (tests.test_struct.test_filters.test_node_predicate_builders.TestFunctionInclusionFilterBuilder) Test that a type error is thrown for an invalid argument type. ... ok test_build_node_data_search (tests.test_struct.test_filters.test_node_predicate_builders.TestNodePredicateBuilders) Test build_node_data_search. ... ok test_build_node_key_search (tests.test_struct.test_filters.test_node_predicate_builders.TestNodePredicateBuilders) Test build_node_key_search. ... ok test_data_missing_key_builder (tests.test_struct.test_filters.test_node_predicate_builders.TestNodePredicateBuilders) Test the data_missing_key_builder function. ... ok test_build_is_association (tests.test_struct.test_filters.test_node_predicates.TestEdgePredicate) Test build_relation_predicate. ... ok test_build_is_increases_or_decreases (tests.test_struct.test_filters.test_node_predicates.TestEdgePredicate) Test build_relation_predicate with multiple relations. ... ok test_has_activity (tests.test_struct.test_filters.test_node_predicates.TestEdgePredicate) ... ok test_has_annotation (tests.test_struct.test_filters.test_node_predicates.TestEdgePredicate) ... ok test_has_authors (tests.test_struct.test_filters.test_node_predicates.TestEdgePredicate) ... ok test_has_degradation (tests.test_struct.test_filters.test_node_predicates.TestEdgePredicate) ... ok test_has_polarity (tests.test_struct.test_filters.test_node_predicates.TestEdgePredicate) ... ok test_has_polarity_dict (tests.test_struct.test_filters.test_node_predicates.TestEdgePredicate) ... ok test_has_provenance (tests.test_struct.test_filters.test_node_predicates.TestEdgePredicate) ... ok test_has_pubmed (tests.test_struct.test_filters.test_node_predicates.TestEdgePredicate) ... ok test_has_translocation (tests.test_struct.test_filters.test_node_predicates.TestEdgePredicate) ... ok test_is_association (tests.test_struct.test_filters.test_node_predicates.TestEdgePredicate) ... ok test_is_causal (tests.test_struct.test_filters.test_node_predicates.TestEdgePredicate) ... ok test_is_direct_causal (tests.test_struct.test_filters.test_node_predicates.TestEdgePredicate) ... ok test_causal_source (tests.test_struct.test_filters.test_node_predicates.TestNodePredicates) ... ok test_fragments (tests.test_struct.test_filters.test_node_predicates.TestNodePredicates) ... ok test_g1_variants (tests.test_struct.test_filters.test_node_predicates.TestNodePredicates) ... ok test_node_exclusion_data (tests.test_struct.test_filters.test_node_predicates.TestNodePredicates) ... ok test_node_exclusion_tuples (tests.test_struct.test_filters.test_node_predicates.TestNodePredicates) ... ok test_node_inclusion_data (tests.test_struct.test_filters.test_node_predicates.TestNodePredicates) ... ok test_node_inclusion_tuples (tests.test_struct.test_filters.test_node_predicates.TestNodePredicates) ... ok test_none (tests.test_struct.test_filters.test_node_predicates.TestNodePredicates) Test permissive node predicate with graph and tuple. ... ok test_none_data (tests.test_struct.test_filters.test_node_predicates.TestNodePredicates) Test permissive node predicate with a node data dictionary. ... ok test_object_has_secretion (tests.test_struct.test_filters.test_node_predicates.TestNodePredicates) p(MGI:Il4) increases sec(p(MGI:Cxcl1)) ... ok test_object_has_translocation (tests.test_struct.test_filters.test_node_predicates.TestNodePredicates) p(HGNC: EGF) increases tloc(p(HGNC: VCP), GOCCID: 0005634, GOCCID: 0005737) ... ok test_p1_active (tests.test_struct.test_filters.test_node_predicates.TestNodePredicates) cat(p(HGNC:HSD11B1)) increases deg(a(CHEBI:cortisol)) ... ok test_p1_data_variants (tests.test_struct.test_filters.test_node_predicates.TestNodePredicates) Test node predicates on BRAF. ... ok test_p1_tuple_variants (tests.test_struct.test_filters.test_node_predicates.TestNodePredicates) Test node predicates on the node tuple from BRAF.s ... ok test_p2_data_variants (tests.test_struct.test_filters.test_node_predicates.TestNodePredicates) ... ok test_p2_tuple_variants (tests.test_struct.test_filters.test_node_predicates.TestNodePredicates) ... ok test_p3 (tests.test_struct.test_filters.test_node_predicates.TestNodePredicates) ... ok test_subject_has_secretion (tests.test_struct.test_filters.test_node_predicates.TestNodePredicates) sec(p(MGI:S100b)) increases a(CHEBI:"nitric oxide") ... ok test_a (tests.test_struct.test_filters.test_struct_filters.TestEdgeFilters) ... ok test_all_filter (tests.test_struct.test_filters.test_struct_filters.TestEdgeFilters) ... ok test_all_filter_dict (tests.test_struct.test_filters.test_struct_filters.TestEdgeFilters) ... ok test_all_filter_empty_annotations (tests.test_struct.test_filters.test_struct_filters.TestEdgeFilters) ... ok test_all_filter_no_annotations (tests.test_struct.test_filters.test_struct_filters.TestEdgeFilters) ... ok test_all_filter_no_query (tests.test_struct.test_filters.test_struct_filters.TestEdgeFilters) Test that the all filter returns true when there's no argument ... ok test_any_filter (tests.test_struct.test_filters.test_struct_filters.TestEdgeFilters) ... ok test_any_filter_empty_annotations (tests.test_struct.test_filters.test_struct_filters.TestEdgeFilters) ... ok test_any_filter_no_annotations (tests.test_struct.test_filters.test_struct_filters.TestEdgeFilters) ... ok test_any_filter_no_query (tests.test_struct.test_filters.test_struct_filters.TestEdgeFilters) Test that the all filter returns true when there's no argument ... ok test_b (tests.test_struct.test_filters.test_struct_filters.TestEdgeFilters) ... ok test_concatenate_multiple_edge_filter (tests.test_struct.test_filters.test_struct_filters.TestNodeFilters) ... ok test_concatenate_multiple_node_filters (tests.test_struct.test_filters.test_struct_filters.TestNodeFilters) ... ok test_concatenate_single_edge_filter (tests.test_struct.test_filters.test_struct_filters.TestNodeFilters) ... ok test_concatenate_single_node_filter (tests.test_struct.test_filters.test_struct_filters.TestNodeFilters) ... ok test_keep_edge_permissive (tests.test_struct.test_filters.test_struct_filters.TestNodeFilters) ... ok test_keep_edge_unpermissive (tests.test_struct.test_filters.test_struct_filters.TestNodeFilters) ... ok test_keep_node_permissive (tests.test_struct.test_filters.test_struct_filters.TestNodeFilters) ... ok test_missing_edge_filter (tests.test_struct.test_filters.test_struct_filters.TestNodeFilters) ... ok test_missing_node_filter (tests.test_struct.test_filters.test_struct_filters.TestNodeFilters) ... ok test_no_edge_filter (tests.test_struct.test_filters.test_struct_filters.TestNodeFilters) ... ok test_no_node_filter_argument (tests.test_struct.test_filters.test_struct_filters.TestNodeFilters) ... ok test_get_subgraphs_by_annotation (tests.test_struct.test_grouping.TestAnnotation) ... ok test_get_subgraphs_by_annotation_with_sentinel (tests.test_struct.test_grouping.TestAnnotation) ... ok test_get_subgraphs_by_citation (tests.test_struct.test_grouping.TestProvenance) Test getting sub-graphs by citation. ... ok test_add_graph (tests.test_struct.test_query.test_mocks.TestMockManager) Test adding a graph with insert_graph. ... ok test_make (tests.test_struct.test_query.test_mocks.TestMockManager) Test instantiating the mock query manager. ... ok test_make_with_graph (tests.test_struct.test_query.test_mocks.TestMockManager) Test counting networks in the mock query manager. ... ok test_get_subgraph_by_annotation_value (tests.test_struct.test_query.test_query.QueryTest) ... ok test_pipeline (tests.test_struct.test_query.test_query.QueryTest) ... ok test_pipeline_2 (tests.test_struct.test_query.test_query.QueryTest) ... ok test_query_multiple_networks (tests.test_struct.test_query.test_query.QueryTest) ... ok test_query_multiple_networks_with_api (tests.test_struct.test_query.test_query.QueryTest) ... ok test_seeding_1 (tests.test_struct.test_query.test_query.QueryTest) ... ok test_seeding_with_pipeline (tests.test_struct.test_query.test_query.QueryTest) ... ok test_fail_run_with_no_networks (tests.test_struct.test_query.test_query.QueryTestEgf) ... ok test_no_seeding_no_pipeline (tests.test_struct.test_query.test_query.QueryTestEgf) ... ok test_random_sample (tests.test_struct.test_query.test_query.QueryTestEgf) Test generating multiple random samples and combining them. ... ok test_seed_by_neighbor (tests.test_struct.test_query.test_query.QueryTestEgf) ... ok test_seed_by_neighbors (tests.test_struct.test_query.test_query.QueryTestEgf) ... ok test_network_ids_multiple (tests.test_struct.test_query.test_query.TestQueryConstructor) ... ok test_network_ids_none (tests.test_struct.test_query.test_query.TestQueryConstructor) ... ok test_network_ids_single (tests.test_struct.test_query.test_query.TestQueryConstructor) ... ok test_network_ids_type_error (tests.test_struct.test_query.test_query.TestQueryConstructor) ... ok test_pipeline (tests.test_struct.test_query.test_query.TestQueryConstructor) ... ok test_seeding (tests.test_struct.test_query.test_query.TestQueryConstructor) ... ok test_append_sample (tests.test_struct.test_query.test_query.TestSeedingConstructor) ... ok test_none (tests.test_struct.test_query.test_query.TestSeedingConstructor) Test construction of a seeding container. ... ok test_append_sample (tests.test_struct.test_query.test_seeding.TestSeedingConstructor) ... ok test_no_seeding (tests.test_struct.test_query.test_seeding.TestSeedingConstructor) ... ok test_none (tests.test_struct.test_query.test_seeding.TestSeedingConstructor) ... ok test_random_sample (tests.test_struct.test_query.test_seeding.TestSeedingConstructor) ... ok test_seed_by_neighbor (tests.test_struct.test_query.test_seeding.TestSeedingConstructor) ... ok test_seed_by_neighbors (tests.test_struct.test_query.test_seeding.TestSeedingConstructor) ... ok test_register_deprecated (tests.test_struct.test_query.test_struct_pipeline.TestDeprecation) Test that a deprecation mapping doesn't override a pre-existing mapping. ... ok test_register_deprecation_remapping_error (tests.test_struct.test_query.test_struct_pipeline.TestDeprecation) Test that a deprecation mapping doesn't override a pre-existing mapping. ... ok test_register_missing (tests.test_struct.test_query.test_struct_pipeline.TestDeprecation) Test that a deprecation mapping fails if it's missing a transformation function. ... ok test_append (tests.test_struct.test_query.test_struct_pipeline.TestPipeline) ... ok test_deprecated_central_dogma_is_registered (tests.test_struct.test_query.test_struct_pipeline.TestPipeline) Tests that a deprecated function is properly registered ... ok test_extend (tests.test_struct.test_query.test_struct_pipeline.TestPipeline) ... ok test_pipeline_by_function (tests.test_struct.test_query.test_struct_pipeline.TestPipeline) ... ok test_pipeline_by_string (tests.test_struct.test_query.test_struct_pipeline.TestPipeline) ... ok test_serialize_file (tests.test_struct.test_query.test_struct_pipeline.TestPipeline) ... ok test_serialize_string (tests.test_struct.test_query.test_struct_pipeline.TestPipeline) ... ok test_append_invalid (tests.test_struct.test_query.test_struct_pipeline.TestPipelineFailures) Test when an invalid type is given to a :class:`pybel.struct.Pipeline`. ... ok test_assert_failure (tests.test_struct.test_query.test_struct_pipeline.TestPipelineFailures) ... ok test_assert_success (tests.test_struct.test_query.test_struct_pipeline.TestPipelineFailures) ... ok test_build_meta_failure (tests.test_struct.test_query.test_struct_pipeline.TestPipelineFailures) ... ok test_fail_add (tests.test_struct.test_query.test_struct_pipeline.TestPipelineFailures) ... ok test_get_function_failure (tests.test_struct.test_query.test_struct_pipeline.TestPipelineFailures) ... ok test_add_node_with_variant (tests.test_struct.test_struct_graph.TestGetGraphProperties) Test that the identifier is carried through to the child. ... ok test_get_node_properties (tests.test_struct.test_struct_graph.TestGetGraphProperties) Test looking up node properties. ... ok test_get_qualified_edge (tests.test_struct.test_struct_graph.TestGetGraphProperties) Test adding an edge to a graph. ... ok test_get_unqualified_edge (tests.test_struct.test_struct_graph.TestGetGraphProperties) Test adding an unqualified edge. ... ok test_name (tests.test_struct.test_struct_graph.TestGraphProperties) Test setting of metadata through attributes. ... ok test_str_kwargs (tests.test_struct.test_struct_graph.TestGraphProperties) Test setting of metadata through keyword arguments. ... ok test_add_simple (tests.test_struct.test_struct_graph.TestStruct) Test that a simple node can be added, but not duplicated. ... ok test_citation_type_error (tests.test_struct.test_struct_graph.TestStruct) Test error handling on adding qualified edges. ... ok test_in_place_type_failure (tests.test_struct.test_struct_operations.TestInnerJoin) ... ok test_initialize (tests.test_struct.test_struct_operations.TestInnerJoin) ... ok test_intersection_failure (tests.test_struct.test_struct_operations.TestInnerJoin) ... ok test_intersection_trivial (tests.test_struct.test_struct_operations.TestInnerJoin) ... ok test_left_node_intersection_join (tests.test_struct.test_struct_operations.TestInnerJoin) ... ok test_magic (tests.test_struct.test_struct_operations.TestInnerJoin) ... ok test_node_intersection (tests.test_struct.test_struct_operations.TestInnerJoin) ... ok test_type_failure (tests.test_struct.test_struct_operations.TestInnerJoin) ... ok test_function (tests.test_struct.test_struct_operations.TestLeftFullJoin) Test full joining two networks using the function. ... ok test_in_place_operator (tests.test_struct.test_struct_operations.TestLeftFullJoin) Test full joining two networks using the BELGraph in-place addition operator. ... ok test_in_place_operator_failure (tests.test_struct.test_struct_operations.TestLeftFullJoin) Test that using the wrong type with the in-place addition operator raises an error. ... ok test_operator (tests.test_struct.test_struct_operations.TestLeftFullJoin) Test full joining two networks using the BELGraph addition operator. ... ok test_operator_failure (tests.test_struct.test_struct_operations.TestLeftFullJoin) Test that using the wrong type with the addition operator raises an error. ... ok test_union (tests.test_struct.test_struct_operations.TestLeftFullJoin) Test that the union of a pair of graphs is the same as the full join. ... ok test_union_failure (tests.test_struct.test_struct_operations.TestLeftFullJoin) Test that the union of no graphs raises a value error. ... ok test_union_trivial (tests.test_struct.test_struct_operations.TestLeftFullJoin) Test that the union of a single graph returns that graph. ... ok test_in_place_type_failure (tests.test_struct.test_struct_operations.TestLeftFullOuterJoin) ... ok test_left_outer_exhaustive_join (tests.test_struct.test_struct_operations.TestLeftFullOuterJoin) ... ok test_left_outer_join (tests.test_struct.test_struct_operations.TestLeftFullOuterJoin) ... ok test_magic (tests.test_struct.test_struct_operations.TestLeftFullOuterJoin) ... ok test_operator (tests.test_struct.test_struct_operations.TestLeftFullOuterJoin) ... ok test_type_failure (tests.test_struct.test_struct_operations.TestLeftFullOuterJoin) ... ok test_count_error_types (tests.test_struct.test_summary.test_errors.TestErrors) Test counting error types. ... ok test_get_naked_names (tests.test_struct.test_summary.test_errors.TestErrors) Retrieve the naked names from a graph. ... ok test_count_citations (tests.test_struct.test_summary.test_provenance.TestProvenance) Test counting citations. ... ok test_1 (tests.test_struct.test_summary.test_struct_summary_edges.TestEdgeSummary) Test iterating over annotation/value pairs. ... ok test_get_annotation_values (tests.test_struct.test_summary.test_struct_summary_edges.TestEdgeSummary) Test getting annotation values. ... ok test_get_unused_annotation_list (tests.test_struct.test_summary.test_struct_summary_edges.TestEdgeSummary) ... ok test_get_unused_annotation_pattern (tests.test_struct.test_summary.test_struct_summary_edges.TestEdgeSummary) ... ok test_get_unused_annotation_url (tests.test_struct.test_summary.test_struct_summary_edges.TestEdgeSummary) ... ok test_count_names_raise (tests.test_struct.test_summary.test_summary_nodes.TestSummary) Test that an index error is raised when trying to count a namespace that isn't present. ... ok test_count_pathologies (tests.test_struct.test_summary.test_summary_nodes.TestSummary) Test counting pathologies in the graph. ... ok test_count_variants (tests.test_struct.test_summary.test_summary_nodes.TestSummary) Test counting the number of variants in a graph. ... ok test_functions_egf (tests.test_struct.test_summary.test_summary_nodes.TestSummary) Test counting nodes and grouping by function on the EGF graph. ... ok test_functions_sialic (tests.test_struct.test_summary.test_summary_nodes.TestSummary) Test counting nodes and grouping by function on the sialic acid graph. ... ok test_get_names_raise (tests.test_struct.test_summary.test_summary_nodes.TestSummary) Test that an index error is raised when trying to get names from a namespace that isn't present. ... ok test_get_top_hubs (tests.test_struct.test_summary.test_summary_nodes.TestSummary) Test counting pathologies in the graph. ... ok test_names_fusions (tests.test_struct.test_summary.test_summary_nodes.TestSummary) Test that names inside fusions are still found by the iterator. ... ok test_names_sialic (tests.test_struct.test_summary.test_summary_nodes.TestSummary) Test getting and counting names by namespace. ... ok test_namespaces_egf (tests.test_struct.test_summary.test_summary_nodes.TestSummary) Test getting and counting namespaces' contents on the EGF graph. ... ok test_namespaces_sialic (tests.test_struct.test_summary.test_summary_nodes.TestSummary) Test getting and counting namespaces' contents on the sialic acid graph. ... ok test_collapse_all_variants (tests.test_struct.test_transformations.test_collapse.TestCollapse) Test collapsing all variants to their reference nodes. ... ok test_collapse_by_dict (tests.test_struct.test_transformations.test_collapse.TestCollapse) Test collapsing nodes by a dictionary. ... ok test_collapse_dogma_1 (tests.test_struct.test_transformations.test_collapse.TestCollapse) Test collapsing to genes, only with translations. ... ok test_collapse_dogma_2 (tests.test_struct.test_transformations.test_collapse.TestCollapse) Test collapsing to genes with translations and transcriptions. ... ok test_collapse_dogma_3 (tests.test_struct.test_transformations.test_collapse.TestCollapse) Test collapsing to genes, only with transcriptions. ... ok test_remove_isolated_in_place (tests.test_struct.test_transformations.test_deletions.TestDeletions) Test removing isolated nodes (in-place). ... ok test_remove_isolated_out_of_place (tests.test_struct.test_transformations.test_deletions.TestDeletions) Test removing isolated nodes (out-of-place). ... ok test_remove_pathologies (tests.test_struct.test_transformations.test_deletions.TestDeletions) Test removal of pathologies. ... ok test_infer_on_sialic_acid_example (tests.test_struct.test_transformations.test_deletions.TestProcessing) Test infer_central_dogma on the sialic acid example. ... ok test_no_infer_on_protein_variants (tests.test_struct.test_transformations.test_deletions.TestProcessing) Test that expansion doesn't occur on protein variants. ... ok test_no_infer_on_rna_variants (tests.test_struct.test_transformations.test_deletions.TestProcessing) Test that expansion doesn't occur on RNA variants. ... ok test_no_infer_protein_fusion (tests.test_struct.test_transformations.test_deletions.TestProcessing) Test that no gene is inferred from a RNA fusion node. ... ok test_no_infer_rna_fusion (tests.test_struct.test_transformations.test_deletions.TestProcessing) Test that no RNA nor gene is inferred from a protein fusion node. ... ok test_neighborhood (tests.test_struct.test_transformations.test_expansion.TestExpansion) Test expansion around the neighborhood of a given node. ... ok test_neighborhood_with_predecessors (tests.test_struct.test_transformations.test_expansion.TestExpansion) Test expansion on the predecessors of a given node. ... ok test_neighborhood_with_successors (tests.test_struct.test_transformations.test_expansion.TestExpansion) Test expansion on the successors of a given node. ... ok test_neighborhoods (tests.test_struct.test_transformations.test_expansion.TestExpansion) Test expansion on the neighborhood of given nodes. ... ok test_get_subgraph_by_annotation_value (tests.test_struct.test_transformations.test_induction.TestEdgeInduction) Test getting a subgraph by a single annotation value. ... ok test_get_subgraph_by_annotation_values (tests.test_struct.test_transformations.test_induction.TestEdgeInduction) Test getting a subgraph by multiple annotation value. ... ok test_build_author_inclusion_filter (tests.test_struct.test_transformations.test_induction.TestEdgePredicateBuilders) Test getting a sub-graph by a single author. ... ok test_build_author_set_inclusion_filter (tests.test_struct.test_transformations.test_induction.TestEdgePredicateBuilders) Test getting a sub-graph by a set of authors. ... ok test_build_pmid_inclusion_filter (tests.test_struct.test_transformations.test_induction.TestEdgePredicateBuilders) Test getting a sub-graph by a single PubMed identifier. ... ok test_build_pmid_set_inclusion_filter (tests.test_struct.test_transformations.test_induction.TestEdgePredicateBuilders) Test getting a sub-graph by a set of PubMed identifiers. ... ok test_expand_upstream_causal_subgraph (tests.test_struct.test_transformations.test_induction.TestInduction) Test expanding on the upstream causal subgraph. ... ok test_get_subgraph_by_all_shortest_paths (tests.test_struct.test_transformations.test_induction.TestInduction) Test get_subgraph_by_all_shortest_paths. ... ok test_get_subgraph_by_induction (tests.test_struct.test_transformations.test_induction.TestInduction) Test get_subgraph_by_induction. ... ok test_get_upstream_causal_subgraph (tests.test_struct.test_transformations.test_induction.TestInduction) Test get_upstream_causal_subgraph. ... ok test_add_and_remove_annotation (tests.test_struct.test_transformations.test_metadata.TestMetadata) Test adding and removing annotations. ... ok test_strip_annotations (tests.test_struct.test_transformations.test_metadata.TestMetadata) Test the strip_annotation function. ... ok test_helper_failure (tests.test_struct.test_transformations.test_random.TestRandom) ... infinite loop happening source: None no grow: {1, 2, 3} ok test_random_edges (tests.test_struct.test_transformations.test_random.TestRandom) Test getting a graph by random edges. ... ok test_random_nodes (tests.test_struct.test_transformations.test_random.TestRandom) Test getting random nodes. ... ok test_random_nodes_inverted (tests.test_struct.test_transformations.test_random.TestRandom) Test getting random nodes. ... ok test_random_sample (tests.test_struct.test_transformations.test_random.TestRandom) Test randomly sampling a graph. ... ok test_random_sample_small (tests.test_struct.test_transformations.test_random.TestRandom) Test a graph that is too small to sample. ... ok test_get_random_path (tests.test_struct.test_transformations.test_random.TestRandomPath) Test getting random paths doesn't crash. ... ok test_does_not_redo (tests.test_struct.test_transformations.test_transfer.TestTransfer) Test that :func:`propagate_node_relations` does not add the same edges twice. ... ok test_get_children (tests.test_struct.test_transformations.test_transfer.TestTransfer) Test iterating over the children of a node. ... ok test_infer (tests.test_struct.test_transformations.test_transfer.TestTransfer) Test inferring child relations. ... ok test_bad_aminoAcid (tests.test_utils.TestRandom) ... ok test_get_date (tests.test_utils.TestRandom) ... ok test_nest_failure (tests.test_utils.TestRandom) ... ok test_dev (tests.test_utils.TestTokenizeVersion) Test when there's a dash after. ... ok test_long (tests.test_utils.TestTokenizeVersion) Test when the version pieces have more than 1 digit. ... ok test_simple (tests.test_utils.TestTokenizeVersion) Test the simplest version string case. ... ok test_download_raises_on_empty (tests.test_utils.TestUtils) Test that an error is thrown if an empty resource is downloaded. ... ok test_download_url (tests.test_utils.TestUtils) Test downloading a resource by URL. ... ok test_expand_dict (tests.test_utils.TestUtils) ... ok test_flatten_dict (tests.test_utils.TestUtils) ... ok test_flatten_dict_withLists (tests.test_utils.TestUtils) ... ok ---------------------------------------------------------------------- Ran 657 tests in 153.336s OK (skipped=1) (, 2) create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/pybel-0.12.1' dh_auto_install I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/pybel-0.12.1/debian/python3-pybel running install running build running build_py running egg_info writing src/PyBEL.egg-info/PKG-INFO writing dependency_links to src/PyBEL.egg-info/dependency_links.txt writing entry points to src/PyBEL.egg-info/entry_points.txt writing requirements to src/PyBEL.egg-info/requires.txt writing top-level names to src/PyBEL.egg-info/top_level.txt reading manifest file 'src/PyBEL.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'scripts' warning: no files found matching '*.bel' under directory 'src/pybel/testing/bel' warning: no files found matching '*.belanno' under directory 'src/pybel/testing/belanno' warning: no files found matching '*.belns' under directory 'src/pybel/testing/belns' warning: no previously-included files matching '*.py[cod]' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.dylib' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.gpickle' found anywhere in distribution warning: no previously-included files found matching '.bumpversion.cfg' writing manifest file 'src/PyBEL.egg-info/SOURCES.txt' running install_lib creating /build/pybel-0.12.1/debian/python3-pybel/usr creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7 creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/__pycache__/cli.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/__pycache__/tokens.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/__pycache__/language.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/__pycache__/utils.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/__pycache__/exceptions.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/__pycache__/constants.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/__pycache__/canonicalize.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/__pycache__ creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl/__pycache__/namespaces.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl/__pycache__/nodes.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl/__pycache__/edges.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl/__pycache__/utils.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl/__pycache__/exc.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl/__pycache__/node_classes.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl/__pycache__/constants.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl/constants.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl/edges.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl/exc.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl/namespaces.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl/node_classes.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl/nodes.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/dsl/utils.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples/__pycache__/tloc_example.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples/__pycache__/statin_example.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples/__pycache__/sialic_acid_example.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples/__pycache__/homology_example.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples/__pycache__/egf_example.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples/__pycache__/braf_example.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples/braf_example.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples/egf_example.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples/homology_example.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples/sialic_acid_example.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples/statin_example.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples/tloc_example.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/examples/various_example.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/__pycache__/web.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/__pycache__/nodelink.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/__pycache__/neo4j.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/__pycache__/line_utils.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/__pycache__/lines.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/__pycache__/jgif.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/__pycache__/indra.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/__pycache__/exc.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/__pycache__/utils.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/__pycache__/gpickle.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/__pycache__/extras.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/exc.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/extras.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/gpickle.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/indra.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/jgif.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/line_utils.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/lines.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/neo4j.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/nodelink.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/utils.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/io/web.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/__pycache__/make_json_serializable.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/__pycache__/database_io.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/__pycache__/citation_utils.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/__pycache__/query_manager.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/__pycache__/lookup_manager.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/__pycache__/exc.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/__pycache__/cache_manager.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/__pycache__/utils.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/__pycache__/models.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/__pycache__/base_manager.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/base_manager.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/cache_manager.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/citation_utils.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/database_io.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/defaults.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/exc.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/lookup_manager.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/make_json_serializable.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/models.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/query_manager.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/manager/utils.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/__pycache__/parse_metadata.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/__pycache__/parse_identifier.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/__pycache__/parse_control.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/__pycache__/baseparser.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/__pycache__/parse_bel.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/__pycache__/exc.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/__pycache__/utils.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/__pycache__ creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/__pycache__/variant.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/__pycache__/truncation.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/__pycache__/protein_substitution.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/__pycache__/constants.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/__pycache__/protein_modification.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/__pycache__/location.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/__pycache__/gene_substitution.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/__pycache__/gene_modification.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/__pycache__/fusion.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/__pycache__/fragment.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/constants.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/fragment.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/fusion.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/gene_modification.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/gene_substitution.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/location.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/protein_modification.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/protein_substitution.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/truncation.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/modifiers/variant.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/baseparser.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/exc.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/parse_bel.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/parse_control.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/parse_identifier.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/parse_metadata.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/parser/utils.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/__pycache__/document.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/__pycache__/exc.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/__pycache__/utils.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/__pycache__/constants.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/__pycache__ creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/definitions creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/definitions/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/definitions/__pycache__/namespace.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/definitions/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/definitions/__pycache__/definitions.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/definitions/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/definitions/__pycache__/write_utils.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/definitions/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/definitions/__pycache__/annotation.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/definitions/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/definitions/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/definitions/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/definitions/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/definitions copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/definitions/annotation.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/definitions copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/definitions/definitions.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/definitions copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/definitions/namespace.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/definitions copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/definitions/write_utils.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/definitions copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/constants.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/document.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/exc.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/resources/utils.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/__pycache__/utils.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/__pycache__/operations.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/__pycache__/graph.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/__pycache__ creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters/__pycache__/node_selection.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters/__pycache__/node_predicate_builders.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters/__pycache__/node_predicates.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters/__pycache__/node_filters.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters/__pycache__/edge_predicate_builders.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters/__pycache__/utils.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters/__pycache__/edge_predicates.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters/__pycache__/edge_filters.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters/edge_filters.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters/edge_predicate_builders.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters/edge_predicates.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters/node_filters.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters/node_predicate_builders.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters/node_predicates.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters/node_selection.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/filters/utils.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/grouping creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/grouping/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/grouping/__pycache__/provenance.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/grouping/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/grouping/__pycache__/utils.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/grouping/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/grouping/__pycache__/annotations.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/grouping/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/grouping/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/grouping/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/grouping/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/grouping copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/grouping/annotations.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/grouping copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/grouping/provenance.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/grouping copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/grouping/utils.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/grouping creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/__pycache__/transfer.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/__pycache__/metadata.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/__pycache__/induction_expansion.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/__pycache__/utils.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/__pycache__ creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/collapse creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/collapse/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/collapse/__pycache__/collapse.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/collapse/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/collapse/__pycache__/protein_rna_origins.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/collapse/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/collapse/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/collapse/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/collapse/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/collapse copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/collapse/collapse.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/collapse copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/collapse/protein_rna_origins.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/collapse creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/deletion creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/deletion/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/deletion/__pycache__/deletion.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/deletion/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/deletion/__pycache__/protein_rna_origins.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/deletion/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/deletion/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/deletion/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/deletion/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/deletion copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/deletion/deletion.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/deletion copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/deletion/protein_rna_origins.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/deletion creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/expansion creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/expansion/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/expansion/__pycache__/upstream.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/expansion/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/expansion/__pycache__/neighborhood.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/expansion/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/expansion/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/expansion/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/expansion/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/expansion copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/expansion/neighborhood.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/expansion copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/expansion/upstream.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/expansion creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction/__pycache__/upstream.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction/__pycache__/random_subgraph.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction/__pycache__/paths.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction/__pycache__/neighborhood.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction/__pycache__/citation.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction/__pycache__/utils.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction/__pycache__/annotations.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction/annotations.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction/citation.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction/neighborhood.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction/paths.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction/random_subgraph.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction/upstream.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction/utils.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/inference creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/inference/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/inference/__pycache__/protein_rna_origins.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/inference/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/inference/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/inference/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/inference/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/inference copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/inference/protein_rna_origins.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/inference copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/induction_expansion.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/metadata.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/transfer.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/mutation/utils.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/pipeline creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/pipeline/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/pipeline/__pycache__/pipeline.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/pipeline/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/pipeline/__pycache__/exc.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/pipeline/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/pipeline/__pycache__/decorators.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/pipeline/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/pipeline/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/pipeline/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/pipeline/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/pipeline copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/pipeline/decorators.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/pipeline copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/pipeline/exc.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/pipeline copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/pipeline/pipeline.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/pipeline creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/query creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/query/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/query/__pycache__/selection.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/query/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/query/__pycache__/constants.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/query/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/query/__pycache__/seeding.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/query/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/query/__pycache__/query.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/query/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/query/__pycache__/exc.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/query/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/query/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/query/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/query/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/query copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/query/constants.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/query copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/query/exc.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/query copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/query/query.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/query copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/query/seeding.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/query copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/query/selection.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/query creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/summary creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/summary/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/summary/__pycache__/provenance.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/summary/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/summary/__pycache__/node_summary.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/summary/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/summary/__pycache__/errors.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/summary/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/summary/__pycache__/edge_summary.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/summary/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/summary/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/summary/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/summary/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/summary copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/summary/edge_summary.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/summary copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/summary/errors.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/summary copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/summary/node_summary.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/summary copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/summary/provenance.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/summary copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/summary/graph_summary.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/summary copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/graph.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/operations.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/struct/utils.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/__pycache__/generate.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/__pycache__/mock_manager.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/__pycache__/mocks.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/__pycache__/constants.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/__pycache__/cases.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/__pycache__/utils.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/__pycache__ copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/__pycache__/__init__.cpython-37.pyc -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/__pycache__ creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/belns copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns/test_ns_empty.belns -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/belns copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns/test_ns_2.belns -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/belns copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns/test_ns_1_updated.belns -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/belns copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns/test_ns_1.belns -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/belns copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns/test_nocache.belns -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/belns copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns/mesh-diseases.belns -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/belns copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns/hgnc-human-genes.belns -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/belns copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns/go-cellular-component.belns -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/belns copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns/go-biological-process.belns -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/belns copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns/disease-ontology.belns -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/belns copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belns/chebi.belns -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/belns creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/belanno copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belanno/test_an_1.belanno -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/belanno copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belanno/species-taxonomy-id.belanno -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/belanno copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belanno/mesh-diseases.belanno -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/belanno copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belanno/confidence-1.0.0.belanno -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/belanno copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/belanno/cell-line.belanno -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/belanno creating /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/bel copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/bel/thorough.bel -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/bel copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/bel/test_bel.bel -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/bel copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/bel/slushy.bel -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/bel copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/bel/misordered.bel -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/bel copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/bel/isolated.bel -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/bel copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/resources/bel/Cytotoxic T-cell Signaling-2.0-Hs.json -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/resources/bel copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/cases.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/constants.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/generate.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/mock_manager.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/mocks.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/testing/utils.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/__init__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/__main__.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/canonicalize.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/cli.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/constants.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/exceptions.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/language.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/tokens.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel copying /build/pybel-0.12.1/.pybuild/cpython3_3.7_pybel/build/pybel/utils.py -> /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl/constants.py to constants.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl/edges.py to edges.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl/exc.py to exc.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl/namespaces.py to namespaces.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl/node_classes.py to node_classes.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl/nodes.py to nodes.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/dsl/utils.py to utils.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples/braf_example.py to braf_example.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples/egf_example.py to egf_example.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples/homology_example.py to homology_example.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples/sialic_acid_example.py to sialic_acid_example.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples/statin_example.py to statin_example.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples/tloc_example.py to tloc_example.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/examples/various_example.py to various_example.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/exc.py to exc.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/extras.py to extras.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/gpickle.py to gpickle.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/indra.py to indra.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/jgif.py to jgif.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/line_utils.py to line_utils.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/lines.py to lines.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/neo4j.py to neo4j.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/nodelink.py to nodelink.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/utils.py to utils.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/io/web.py to web.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/base_manager.py to base_manager.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/cache_manager.py to cache_manager.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/citation_utils.py to citation_utils.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/database_io.py to database_io.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/defaults.py to defaults.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/exc.py to exc.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/lookup_manager.py to lookup_manager.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/make_json_serializable.py to make_json_serializable.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/models.py to models.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/query_manager.py to query_manager.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/manager/utils.py to utils.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/constants.py to constants.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/fragment.py to fragment.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/fusion.py to fusion.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/gene_modification.py to gene_modification.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/gene_substitution.py to gene_substitution.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/location.py to location.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/protein_modification.py to protein_modification.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/protein_substitution.py to protein_substitution.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/truncation.py to truncation.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/modifiers/variant.py to variant.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/baseparser.py to baseparser.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/exc.py to exc.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/parse_bel.py to parse_bel.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/parse_control.py to parse_control.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/parse_identifier.py to parse_identifier.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/parse_metadata.py to parse_metadata.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/parser/utils.py to utils.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/definitions/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/definitions/annotation.py to annotation.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/definitions/definitions.py to definitions.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/definitions/namespace.py to namespace.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/definitions/write_utils.py to write_utils.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/constants.py to constants.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/document.py to document.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/exc.py to exc.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/resources/utils.py to utils.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters/edge_filters.py to edge_filters.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters/edge_predicate_builders.py to edge_predicate_builders.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters/edge_predicates.py to edge_predicates.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters/node_filters.py to node_filters.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters/node_predicate_builders.py to node_predicate_builders.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters/node_predicates.py to node_predicates.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters/node_selection.py to node_selection.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/filters/utils.py to utils.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/grouping/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/grouping/annotations.py to annotations.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/grouping/provenance.py to provenance.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/grouping/utils.py to utils.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/collapse/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/collapse/collapse.py to collapse.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/collapse/protein_rna_origins.py to protein_rna_origins.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/deletion/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/deletion/deletion.py to deletion.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/deletion/protein_rna_origins.py to protein_rna_origins.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/expansion/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/expansion/neighborhood.py to neighborhood.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/expansion/upstream.py to upstream.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction/annotations.py to annotations.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction/citation.py to citation.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction/neighborhood.py to neighborhood.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction/paths.py to paths.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction/random_subgraph.py to random_subgraph.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction/upstream.py to upstream.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction/utils.py to utils.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/inference/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/inference/protein_rna_origins.py to protein_rna_origins.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/induction_expansion.py to induction_expansion.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/metadata.py to metadata.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/transfer.py to transfer.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/mutation/utils.py to utils.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/pipeline/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/pipeline/decorators.py to decorators.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/pipeline/exc.py to exc.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/pipeline/pipeline.py to pipeline.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/query/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/query/constants.py to constants.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/query/exc.py to exc.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/query/query.py to query.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/query/seeding.py to seeding.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/query/selection.py to selection.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/summary/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/summary/edge_summary.py to edge_summary.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/summary/errors.py to errors.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/summary/node_summary.py to node_summary.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/summary/provenance.py to provenance.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/summary/graph_summary.py to graph_summary.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/graph.py to graph.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/operations.py to operations.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/struct/utils.py to utils.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/cases.py to cases.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/constants.py to constants.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/generate.py to generate.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/mock_manager.py to mock_manager.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/mocks.py to mocks.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/testing/utils.py to utils.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/__main__.py to __main__.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/canonicalize.py to canonicalize.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/cli.py to cli.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/constants.py to constants.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/exceptions.py to exceptions.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/language.py to language.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/tokens.py to tokens.cpython-37.pyc byte-compiling /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/pybel/utils.py to utils.cpython-37.pyc running install_egg_info Copying src/PyBEL.egg-info to /build/pybel-0.12.1/debian/python3-pybel/usr/lib/python3.7/dist-packages/PyBEL-0.12.1.egg-info Skipping SOURCES.txt running install_scripts Installing pybel script to /build/pybel-0.12.1/debian/python3-pybel/usr/bin # To avoid conflict with Python3 version rm -rf /build/pybel-0.12.1/debian/python-pybel/usr/bin # eliminate lintian warning for d in $(find /build/pybel-0.12.1/debian/python3-pybel/usr/lib -maxdepth 1 -type d -name "python3.*"); \ do \ chmod -x $d/dist-packages/pybel/testing/resources/bel/*.json ; \ done make[1]: Leaving directory '/build/pybel-0.12.1' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pybel' in '../python3-pybel_0.12.1-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../pybel_0.12.1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from pybel-0.12.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/29449 and its subdirectories I: Current time: Wed Sep 1 23:19:10 -12 2021 I: pbuilder-time-stamp: 1630581550