I: pbuilder: network access will be disabled during build I: Current time: Mon Sep 6 12:42:09 -12 2021 I: pbuilder-time-stamp: 1630975329 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mrbayes_3.2.6+dfsg-2.dsc] I: copying [./mrbayes_3.2.6+dfsg.orig.tar.xz] I: copying [./mrbayes_3.2.6+dfsg-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Jul 20 16:39:37 2017 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mrbayes_3.2.6+dfsg-2.dsc dpkg-source: info: extracting mrbayes in mrbayes-3.2.6+dfsg dpkg-source: info: unpacking mrbayes_3.2.6+dfsg.orig.tar.xz dpkg-source: info: unpacking mrbayes_3.2.6+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying as-needed.patch dpkg-source: info: applying ldlibs.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/32587/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='32587' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.NeZ569mbFe/pbuilderrc_ZXA3 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.NeZ569mbFe/b1 --logfile b1/build.log mrbayes_3.2.6+dfsg-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink-sled13-arm64 4.4.0-186-generic #216-Ubuntu SMP Wed Jul 1 05:35:21 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 5 02:49 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/32587/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2), autoconf, automake dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 9); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libreadline-dev; however: Package libreadline-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2); however: Package libhmsbeagle-dev is not installed. Package libhmsbeagle-dev is not installed. pbuilder-satisfydepends-dummy depends on autoconf; however: Package autoconf is not installed. pbuilder-satisfydepends-dummy depends on automake; however: Package automake is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libclang-common-7-dev{a} libclc-amdgcn{a} libclc-dev{a} libclc-r600{a} libcroco3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1{a} libevent-2.1-6{a} libevent-core-2.1-6{a} libevent-pthreads-2.1-6{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libgssapi-krb5-2{a} libhmsbeagle-dev{a} libhmsbeagle1v5{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc5{a} libibverbs-dev{a} libibverbs1{a} libicu63{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libllvm7{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libncurses-dev{a} libncurses6{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix2{a} libreadline-dev{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mesa-opencl-icd{a} mpi-default-dev{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} po-debconf{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libcoarrays-openmpi-dev libglib2.0-data libgpm2 libmail-sendmail-perl lynx shared-mime-info wget xauth xdg-user-dirs 0 packages upgraded, 85 newly installed, 0 to remove and 0 not upgraded. Need to get 98.8 MB of archives. After unpacking 496 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 readline-common all 7.0-5 [70.6 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libedit2 arm64 3.1-20181209-1 [91.2 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 libkrb5support0 arm64 1.17-3 [64.7 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libk5crypto3 arm64 1.17-3 [122 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libkrb5-3 arm64 1.17-3 [353 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 libgssapi-krb5-2 arm64 1.17-3 [150 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 openssh-client arm64 1:7.9p1-10+deb10u2 [757 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 libnl-3-200 arm64 3.4.0-1 [54.9 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 libnl-route-3-200 arm64 3.4.0-1 [134 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 libibverbs1 arm64 22.1-1 [47.8 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 ibverbs-providers arm64 22.1-1 [174 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 libllvm7 arm64 1:7.0.1-8 [10.8 MB] Get: 48 http://deb.debian.org/debian buster/main arm64 libclang-common-7-dev arm64 1:7.0.1-8 [2098 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 libclc-dev all 0.2.0+git20180917-3 [26.9 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 libclc-amdgcn all 0.2.0+git20180917-3 [30.0 MB] Get: 51 http://deb.debian.org/debian buster/main arm64 libclc-r600 all 0.2.0+git20180917-3 [19.9 MB] Get: 52 http://deb.debian.org/debian buster/main arm64 libdrm-common all 2.4.97-1 [13.8 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 libdrm2 arm64 2.4.97-1 [39.5 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 libdrm-amdgpu1 arm64 2.4.97-1 [26.6 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 libdrm-nouveau2 arm64 2.4.97-1 [25.5 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 libdrm-radeon1 arm64 2.4.97-1 [30.0 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 libevent-2.1-6 arm64 2.1.8-stable-4 [150 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 libevent-core-2.1-6 arm64 2.1.8-stable-4 [112 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 libevent-pthreads-2.1-6 arm64 2.1.8-stable-4 [47.7 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 libgfortran5 arm64 8.3.0-6 [298 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 ocl-icd-libopencl1 arm64 2.2.12-2 [37.4 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 mesa-opencl-icd arm64 18.3.6-2+deb10u1 [6805 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 libhmsbeagle1v5 arm64 3.1.2+dfsg-6 [149 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 libhmsbeagle-dev arm64 3.1.2+dfsg-6 [213 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 libltdl7 arm64 2.4.6-9 [389 kB] Get: 67 http://deb.debian.org/debian buster/main arm64 libnuma1 arm64 2.0.12-1 [25.6 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 libhwloc5 arm64 1.11.12-3 [97.9 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 libnuma-dev arm64 2.0.12-1 [40.0 kB] Get: 70 http://deb.debian.org/debian buster/main arm64 libltdl-dev arm64 2.4.6-9 [162 kB] Get: 71 http://deb.debian.org/debian buster/main arm64 libhwloc-dev arm64 1.11.12-3 [165 kB] Get: 72 http://deb.debian.org/debian buster/main arm64 libpciaccess0 arm64 0.14-1 [51.0 kB] Get: 73 http://deb.debian.org/debian buster/main arm64 libhwloc-plugins arm64 1.11.12-3 [16.9 kB] Get: 74 http://deb.debian.org/debian buster/main arm64 libnl-3-dev arm64 3.4.0-1 [98.2 kB] Get: 75 http://deb.debian.org/debian buster/main arm64 libnl-route-3-dev arm64 3.4.0-1 [162 kB] Get: 76 http://deb.debian.org/debian buster/main arm64 libibverbs-dev arm64 22.1-1 [356 kB] Get: 77 http://deb.debian.org/debian buster/main arm64 libncurses-dev arm64 6.1+20181013-2+deb10u2 [324 kB] Get: 78 http://deb.debian.org/debian buster/main arm64 libpmix2 arm64 3.1.2-3 [455 kB] Get: 79 http://deb.debian.org/debian buster/main arm64 libopenmpi3 arm64 3.1.3-11 [1996 kB] Get: 80 http://deb.debian.org/debian buster/main arm64 openmpi-common all 3.1.3-11 [165 kB] Get: 81 http://deb.debian.org/debian buster/main arm64 openmpi-bin arm64 3.1.3-11 [199 kB] Get: 82 http://deb.debian.org/debian buster/main arm64 libopenmpi-dev arm64 3.1.3-11 [974 kB] Get: 83 http://deb.debian.org/debian buster/main arm64 libreadline7 arm64 7.0-5 [134 kB] Get: 84 http://deb.debian.org/debian buster/main arm64 libreadline-dev arm64 7.0-5 [128 kB] Get: 85 http://deb.debian.org/debian buster/main arm64 mpi-default-dev arm64 1.13 [5476 B] Fetched 98.8 MB in 10s (9851 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... 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Setting up libhwloc5:arm64 (1.11.12-3) ... Setting up libedit2:arm64 (3.1-20181209-1) ... Setting up m4 (1.4.18-2) ... Setting up libreadline-dev:arm64 (7.0-5) ... Setting up libhwloc-plugins:arm64 (1.11.12-3) ... Setting up libnuma-dev:arm64 (2.0.12-1) ... Setting up libnl-route-3-200:arm64 (3.4.0-1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:arm64 (1.17-3) ... Setting up libcroco3:arm64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up libdrm2:arm64 (2.4.97-1) ... Setting up dwz (0.12-3) ... Setting up libnl-3-dev:arm64 (3.4.0-1) ... Setting up groff-base (1.22.4-3) ... Setting up libllvm7:arm64 (1:7.0.1-8) ... Setting up libdrm-amdgpu1:arm64 (2.4.97-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:arm64 (22.1-1) ... Setting up libdrm-nouveau2:arm64 (2.4.97-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libpmix2:arm64 (3.1.2-3) ... Setting up ibverbs-providers:arm64 (22.1-1) ... Setting up libdrm-radeon1:arm64 (2.4.97-1) ... Setting up openssh-client (1:7.9p1-10+deb10u2) ... Setting up libopenmpi3:arm64 (3.1.3-11) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnl-route-3-dev:arm64 (3.4.0-1) ... Setting up libltdl-dev:arm64 (2.4.6-9) ... Setting up libclang-common-7-dev (1:7.0.1-8) ... Setting up libhwloc-dev:arm64 (1.11.12-3) ... Setting up openmpi-bin (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libclc-amdgcn (0.2.0+git20180917-3) ... Setting up po-debconf (1.0.21) ... Setting up libibverbs-dev:arm64 (22.1-1) ... Setting up libclc-r600 (0.2.0+git20180917-3) ... Setting up libopenmpi-dev:arm64 (3.1.3-11) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode Setting up mesa-opencl-icd:arm64 (18.3.6-2+deb10u1) ... Setting up libhmsbeagle1v5 (3.1.2+dfsg-6) ... Setting up mpi-default-dev (1.13) ... Setting up libhmsbeagle-dev (3.1.2+dfsg-6) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/mrbayes-3.2.6+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package mrbayes dpkg-buildpackage: info: source version 3.2.6+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nadiya Sitdykova dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --sourcedirectory=src debian/rules override_dh_auto_clean make[1]: Entering directory '/build/mrbayes-3.2.6+dfsg' ( cd src ; /usr/bin/make -f Makefile.in distclean ) make[2]: Entering directory '/build/mrbayes-3.2.6+dfsg/src' rm -f *.o *~ mb rm -rf Makefile config.log config.status config.h *.cache make[2]: Leaving directory '/build/mrbayes-3.2.6+dfsg/src' rm -f src/configure rm -f mb mb-mpi src/mb make[1]: Leaving directory '/build/mrbayes-3.2.6+dfsg' dh_clean -O--sourcedirectory=src debian/rules build dh build --sourcedirectory=src dh_update_autotools_config -O--sourcedirectory=src debian/rules override_dh_auto_configure make[1]: Entering directory '/build/mrbayes-3.2.6+dfsg' #Configure for MPI at first ( cd src ; autoconf ) dh_auto_configure -- --with-beagle=/usr --enable-mpi=yes --enable-debug=yes cd src && ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --with-beagle=/usr --enable-mpi=yes --enable-debug=yes configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking configure: NOTICE: Because the variable $CFLAGS is defined in your shell, the default MrBayes flags will be overridden. To ensure optimal performance, please check that your $CFLAGS variable is set correctly. Alternatively, unset the $CFLAGS variable in your shell in order to use the default MrBayes compiler options. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for exp in -lm... yes checking for a BSD-compatible install... /usr/bin/install -c checking for mpicc... yes checking for SSE support... no checking for /usr/include/libhmsbeagle/libhmsbeagle/beagle.h... yes checking for /usr/include/libhmsbeagle/libhmsbeagle/platform.h... yes checking for /usr/lib... yes checking for readline in -lreadline... yes checking for rl_completion_matches function... yes checking for 32 or 64 bits cpu... 64 configure: creating ./config.status config.status: creating Makefile config.status: creating config.h configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking make[1]: Leaving directory '/build/mrbayes-3.2.6+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/mrbayes-3.2.6+dfsg' # build mb-mpi (from initial config) LIBS="-Wl,--as-needed" dh_auto_build cd src && make -j1 make[2]: Entering directory '/build/mrbayes-3.2.6+dfsg/src' mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o command.o command.c mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o model.o model.c mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c mcmc.c: In function 'ReusePreviousResults.part.15': mcmc.c:15811:52: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 3 and 210 [-Wformat-overflow=] sprintf (fileName, "%s%s.tree%d.run%d.t", workingDir, localFileName, i+1, n+1); ^~ mcmc.c:15811:36: note: directive argument in the range [1, 2147483647] sprintf (fileName, "%s%s.tree%d.run%d.t", workingDir, localFileName, i+1, n+1); ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from mcmc.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 14 and 230 bytes into a destination of size 220 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmc.c: In function 'ReopenMBPrintFiles': mcmc.c:15265:50: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 2 and 110 [-Wformat-overflow=] sprintf (fileName, "%s.tree%d.run%d.t", localFileName, i+1, n+1); ^~ mcmc.c:15265:36: note: directive argument in the range [1, 2147483647] sprintf (fileName, "%s.tree%d.run%d.t", localFileName, i+1, n+1); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from mcmc.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 14 and 131 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmc.c: In function 'RunChain': mcmc.c:17251:46: warning: '.ss' directive writing 3 bytes into a region of size between 1 and 220 [-Wformat-overflow=] sprintf (bkupFileName,"%s.ss%d", ckpFileName,chainParams.numStepsSS-stepIndexSS); ^~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from mcmc.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 234 bytes into a destination of size 220 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o likelihood.o likelihood.c mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o proposal.o proposal.c mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sumpt.o sumpt.c sumpt.c: In function 'OpenSumtFiles': sumpt.c:7101:40: warning: '.parts' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (pFilename, "%s.parts", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7102:40: warning: '.tstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (sFilename, "%s.tstat", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7103:40: warning: '.vstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (vFilename, "%s.vstat", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7104:40: warning: '.con.tre' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (cFilename, "%s.con.tre", sumtParams.sumtOutfile); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7105:40: warning: '.trprobs' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tFilename, "%s.trprobs", sumtParams.sumtOutfile); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7093:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, i+1); ^~~~~ sumpt.c:7093:37: note: directive argument in the range [1, 2147483647] sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, i+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7094:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, i+1); ^~~~~ sumpt.c:7094:37: note: directive argument in the range [1, 2147483647] sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, i+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7095:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, i+1); ^~~~~ sumpt.c:7095:37: note: directive argument in the range [1, 2147483647] sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, i+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7096:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, i+1); ^~~~~ sumpt.c:7096:37: note: directive argument in the range [1, 2147483647] sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, i+1); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 143 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7097:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, i+1); ^~~~~ sumpt.c:7097:37: note: directive argument in the range [1, 2147483647] sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, i+1); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 143 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7165:32: warning: '.parts' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (pFilename, "%s.parts", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7166:32: warning: '.tstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (sFilename, "%s.tstat", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7167:32: warning: '.vstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (vFilename, "%s.vstat", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7168:32: warning: '.con.tre' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (cFilename, "%s.con.tre", sumtParams.sumtOutfile); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7169:32: warning: '.trprobs' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tFilename, "%s.trprobs", sumtParams.sumtOutfile); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7157:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, treeNo+1); ^~~~~ sumpt.c:7157:29: note: directive argument in the range [-2147483647, 2147483647] sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7158:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, treeNo+1); ^~~~~ sumpt.c:7158:29: note: directive argument in the range [-2147483647, 2147483647] sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7159:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, treeNo+1); ^~~~~ sumpt.c:7159:29: note: directive argument in the range [-2147483647, 2147483647] sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7160:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, treeNo+1); ^~~~~ sumpt.c:7160:29: note: directive argument in the range [-2147483647, 2147483647] sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 144 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7161:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, treeNo+1); ^~~~~ sumpt.c:7161:29: note: directive argument in the range [-2147483647, 2147483647] sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 144 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c: In function 'PrintBrlensToFile': sumpt.c:7257:29: warning: '%s' directive writing up to 119 bytes into a region of size 100 [-Wformat-overflow=] sprintf (filename, "%s.brlens", sumtParams.sumtOutfile); ^~ ~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 127 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7255:29: warning: '%s' directive writing up to 119 bytes into a region of size 100 [-Wformat-overflow=] sprintf (filename, "%s.tree%d.brlens", sumtParams.sumtOutfile, treeNo+1); ^~ ~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7255:28: note: directive argument in the range [-2147483647, 2147483647] sprintf (filename, "%s.tree%d.brlens", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 14 and 143 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c: In function 'DoSumt': sumpt.c:4953:39: warning: '.run' directive writing 4 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tempName, "%s.run%d.t", fileName, sumtParams.runId+1); ^~~~ sumpt.c:4953:36: note: directive argument in the range [-2147483647, 2147483647] sprintf (tempName, "%s.run%d.t", fileName, sumtParams.runId+1); ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 137 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:4951:39: warning: '.t' directive writing 2 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tempName, "%s.t", fileName); ^~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 3 and 122 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o best.o best.c mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -o mb bayes.o command.o model.o mcmc.o likelihood.o proposal.o sumpt.o utils.o mbbeagle.o best.o -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm make[2]: Leaving directory '/build/mrbayes-3.2.6+dfsg/src' mv src/mb ./mb-mpi # Now - build mb ( cd src ; make clean ) make[2]: Entering directory '/build/mrbayes-3.2.6+dfsg/src' rm -f *.o *~ mb make[2]: Leaving directory '/build/mrbayes-3.2.6+dfsg/src' dh_auto_configure -- --with-beagle=/usr --enable-mpi=no --enable-debug=yes cd src && ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --with-beagle=/usr --enable-mpi=no --enable-debug=yes configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking configure: NOTICE: Because the variable $CFLAGS is defined in your shell, the default MrBayes flags will be overridden. To ensure optimal performance, please check that your $CFLAGS variable is set correctly. Alternatively, unset the $CFLAGS variable in your shell in order to use the default MrBayes compiler options. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for exp in -lm... yes checking for a BSD-compatible install... /usr/bin/install -c checking for SSE support... no checking for /usr/include/libhmsbeagle/libhmsbeagle/beagle.h... yes checking for /usr/include/libhmsbeagle/libhmsbeagle/platform.h... yes checking for /usr/lib... yes checking for readline in -lreadline... yes checking for rl_completion_matches function... yes checking for 32 or 64 bits cpu... 64 configure: creating ./config.status config.status: creating Makefile config.status: creating config.h configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking LIBS="-Wl,--as-needed" dh_auto_build cd src && make -j1 make[2]: Entering directory '/build/mrbayes-3.2.6+dfsg/src' gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o command.o command.c gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o model.o model.c gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c mcmc.c: In function 'ReusePreviousResults.part.12': mcmc.c:15811:52: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 3 and 210 [-Wformat-overflow=] sprintf (fileName, "%s%s.tree%d.run%d.t", workingDir, localFileName, i+1, n+1); ^~ mcmc.c:15811:36: note: directive argument in the range [1, 2147483647] sprintf (fileName, "%s%s.tree%d.run%d.t", workingDir, localFileName, i+1, n+1); ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from mcmc.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 14 and 230 bytes into a destination of size 220 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmc.c: In function 'ReopenMBPrintFiles': mcmc.c:15265:50: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 2 and 110 [-Wformat-overflow=] sprintf (fileName, "%s.tree%d.run%d.t", localFileName, i+1, n+1); ^~ mcmc.c:15265:36: note: directive argument in the range [1, 2147483647] sprintf (fileName, "%s.tree%d.run%d.t", localFileName, i+1, n+1); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from mcmc.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 14 and 131 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmc.c: In function 'RunChain': mcmc.c:17251:46: warning: '.ss' directive writing 3 bytes into a region of size between 1 and 220 [-Wformat-overflow=] sprintf (bkupFileName,"%s.ss%d", ckpFileName,chainParams.numStepsSS-stepIndexSS); ^~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from mcmc.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 234 bytes into a destination of size 220 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o likelihood.o likelihood.c gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o proposal.o proposal.c gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sumpt.o sumpt.c sumpt.c: In function 'OpenSumtFiles': sumpt.c:7101:40: warning: '.parts' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (pFilename, "%s.parts", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7102:40: warning: '.tstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (sFilename, "%s.tstat", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7103:40: warning: '.vstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (vFilename, "%s.vstat", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7104:40: warning: '.con.tre' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (cFilename, "%s.con.tre", sumtParams.sumtOutfile); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7105:40: warning: '.trprobs' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tFilename, "%s.trprobs", sumtParams.sumtOutfile); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7093:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, i+1); ^~~~~ sumpt.c:7093:37: note: directive argument in the range [1, 2147483647] sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, i+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7094:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, i+1); ^~~~~ sumpt.c:7094:37: note: directive argument in the range [1, 2147483647] sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, i+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7095:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, i+1); ^~~~~ sumpt.c:7095:37: note: directive argument in the range [1, 2147483647] sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, i+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7096:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, i+1); ^~~~~ sumpt.c:7096:37: note: directive argument in the range [1, 2147483647] sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, i+1); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 143 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7097:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, i+1); ^~~~~ sumpt.c:7097:37: note: directive argument in the range [1, 2147483647] sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, i+1); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 143 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7165:32: warning: '.parts' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (pFilename, "%s.parts", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7166:32: warning: '.tstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (sFilename, "%s.tstat", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7167:32: warning: '.vstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (vFilename, "%s.vstat", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7168:32: warning: '.con.tre' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (cFilename, "%s.con.tre", sumtParams.sumtOutfile); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7169:32: warning: '.trprobs' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tFilename, "%s.trprobs", sumtParams.sumtOutfile); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7157:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, treeNo+1); ^~~~~ sumpt.c:7157:29: note: directive argument in the range [-2147483647, 2147483647] sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7158:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, treeNo+1); ^~~~~ sumpt.c:7158:29: note: directive argument in the range [-2147483647, 2147483647] sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7159:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, treeNo+1); ^~~~~ sumpt.c:7159:29: note: directive argument in the range [-2147483647, 2147483647] sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7160:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, treeNo+1); ^~~~~ sumpt.c:7160:29: note: directive argument in the range [-2147483647, 2147483647] sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 144 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7161:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, treeNo+1); ^~~~~ sumpt.c:7161:29: note: directive argument in the range [-2147483647, 2147483647] sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 144 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c: In function 'PrintBrlensToFile': sumpt.c:7257:29: warning: '%s' directive writing up to 119 bytes into a region of size 100 [-Wformat-overflow=] sprintf (filename, "%s.brlens", sumtParams.sumtOutfile); ^~ ~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 127 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7255:29: warning: '%s' directive writing up to 119 bytes into a region of size 100 [-Wformat-overflow=] sprintf (filename, "%s.tree%d.brlens", sumtParams.sumtOutfile, treeNo+1); ^~ ~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7255:28: note: directive argument in the range [-2147483647, 2147483647] sprintf (filename, "%s.tree%d.brlens", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 14 and 143 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c: In function 'DoSumt': sumpt.c:4953:39: warning: '.run' directive writing 4 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tempName, "%s.run%d.t", fileName, sumtParams.runId+1); ^~~~ sumpt.c:4953:36: note: directive argument in the range [-2147483647, 2147483647] sprintf (tempName, "%s.run%d.t", fileName, sumtParams.runId+1); ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 137 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:4951:39: warning: '.t' directive writing 2 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tempName, "%s.t", fileName); ^~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 3 and 122 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o best.o best.c gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -o mb bayes.o command.o model.o mcmc.o likelihood.o proposal.o sumpt.o utils.o mbbeagle.o best.o -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm make[2]: Leaving directory '/build/mrbayes-3.2.6+dfsg/src' mv src/mb . make[1]: Leaving directory '/build/mrbayes-3.2.6+dfsg' dh_auto_test -O--sourcedirectory=src fakeroot debian/rules binary dh binary --sourcedirectory=src dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src debian/rules override_dh_auto_install make[1]: Entering directory '/build/mrbayes-3.2.6+dfsg' echo "Do not try to install to /usr/local/bin" Do not try to install to /usr/local/bin make[1]: Leaving directory '/build/mrbayes-3.2.6+dfsg' dh_install -O--sourcedirectory=src dh_installdocs -O--sourcedirectory=src dh_installchangelogs -O--sourcedirectory=src dh_installman -O--sourcedirectory=src dh_installinit -O--sourcedirectory=src dh_perl -O--sourcedirectory=src dh_link -O--sourcedirectory=src dh_strip_nondeterminism -O--sourcedirectory=src debian/rules override_dh_compress make[1]: Entering directory '/build/mrbayes-3.2.6+dfsg' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/mrbayes-3.2.6+dfsg' dh_fixperms -O--sourcedirectory=src dh_missing -O--sourcedirectory=src dh_strip -O--sourcedirectory=src dh_makeshlibs -O--sourcedirectory=src dh_shlibdeps -O--sourcedirectory=src dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes-mpi/usr/lib/mrbayes-mpi/mb-mpi was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -O--sourcedirectory=src dh_gencontrol -O--sourcedirectory=src dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src dpkg-deb: building package 'mrbayes' in '../mrbayes_3.2.6+dfsg-2_arm64.deb'. dpkg-deb: building package 'mrbayes-mpi' in '../mrbayes-mpi_3.2.6+dfsg-2_arm64.deb'. dpkg-deb: building package 'mrbayes-mpi-dbgsym' in '../mrbayes-mpi-dbgsym_3.2.6+dfsg-2_arm64.deb'. dpkg-deb: building package 'mrbayes-dbgsym' in '../mrbayes-dbgsym_3.2.6+dfsg-2_arm64.deb'. dpkg-deb: building package 'mrbayes-doc' in '../mrbayes-doc_3.2.6+dfsg-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../mrbayes_3.2.6+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/32587 and its subdirectories I: Current time: Mon Sep 6 12:48:53 -12 2021 I: pbuilder-time-stamp: 1630975733