I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 12 18:42:25 +14 2021 I: pbuilder-time-stamp: 1631421745 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [meep_1.7.0-3.dsc] I: copying [./meep_1.7.0.orig.tar.gz] I: copying [./meep_1.7.0-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Feb 6 03:00:49 2019 +14 gpgv: using RSA key 6201FBFFDBBDE07822EABB9696FCAC0D387B5847 gpgv: issuer "debian@alteholz.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./meep_1.7.0-3.dsc dpkg-source: info: extracting meep in meep-1.7.0 dpkg-source: info: unpacking meep_1.7.0.orig.tar.gz dpkg-source: info: unpacking meep_1.7.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying c++14.patch dpkg-source: info: applying fix-test.patch dpkg-source: info: applying libgeom-fix-include.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/19112/tmp/hooks/D01_modify_environment starting debug: Running on codethink-sled15-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/19112/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/19112/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/var/lib/jenkins HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=19112 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.w8Sjym91Qb/pbuilderrc_822b --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.w8Sjym91Qb/b2 --logfile b2/build.log meep_1.7.0-3.dsc' SUDO_GID=117 SUDO_UID=110 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root USERNAME=root _='I: set' http_proxy=http://192.168.101.16:3128 I: uname -a Linux i-capture-the-hostname 4.4.0-186-generic #216-Ubuntu SMP Wed Jul 1 05:35:21 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 18 2019 bash -rwxr-xr-x 3 root root 34808 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 35576 Mar 1 2019 cat -rwxr-xr-x 1 root root 60256 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 56096 Mar 1 2019 chmod -rwxr-xr-x 1 root root 64368 Mar 1 2019 chown -rwxr-xr-x 1 root root 134632 Mar 1 2019 cp -rwxr-xr-x 1 root root 129536 Jan 18 2019 dash -rwxr-xr-x 1 root root 97136 Mar 1 2019 date -rwxr-xr-x 1 root root 76736 Mar 1 2019 dd -rwxr-xr-x 1 root root 93752 Mar 1 2019 df -rwxr-xr-x 1 root root 138848 Mar 1 2019 dir -rwxr-xr-x 1 root root 75984 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 27256 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 23 2020 fusermount -rwxr-xr-x 1 root root 174304 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 6 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 27 2018 hostname -rwxr-xr-x 1 root root 64472 Mar 1 2019 ln -rwxr-xr-x 1 root root 52544 Jul 27 2018 login -rwxr-xr-x 1 root root 138848 Mar 1 2019 ls -rwxr-xr-x 1 root root 108552 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 76840 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 64480 Mar 1 2019 mknod -rwxr-xr-x 1 root root 39736 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 10 2019 more -rwsr-xr-x 1 root root 47112 Jan 10 2019 mount -rwxr-xr-x 1 root root 14344 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 138736 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Mar 1 2019 readlink -rwxr-xr-x 1 root root 68440 Mar 1 2019 rm -rwxr-xr-x 1 root root 39624 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Sep 12 18:42 sh -> bash lrwxrwxrwx 1 root root 4 Sep 12 04:48 sh.distrib -> dash -rwxr-xr-x 1 root root 31384 Mar 1 2019 sleep -rwxr-xr-x 1 root root 72480 Mar 1 2019 stty -rwsr-xr-x 1 root root 59424 Jan 10 2019 su -rwxr-xr-x 1 root root 31416 Mar 1 2019 sync -rwxr-xr-x 1 root root 449416 Apr 24 2019 tar -rwxr-xr-x 1 root root 10560 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 88968 Mar 1 2019 touch -rwxr-xr-x 1 root root 27256 Mar 1 2019 true -rwxr-xr-x 1 root root 14264 Apr 23 2020 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 10 2019 umount -rwxr-xr-x 1 root root 31384 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 138848 Mar 1 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/19112/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: gfortran, debhelper (>= 11), libctl-dev (>= 4.1.4-2), pkg-config, libharminv-dev (>= 1.4.1), zlib1g-dev, libfftw3-dev, libgsl-dev, liblapack-dev, chrpath, libatlas-base-dev, libhdf5-dev, swig, mpb-dev, mpb, python-dev, python-numpy, python-h5py, python-scipy dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libctl-dev (>= 4.1.4-2); however: Package libctl-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libharminv-dev (>= 1.4.1); however: Package libharminv-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev; however: Package liblapack-dev is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. pbuilder-satisfydepends-dummy depends on libatlas-base-dev; however: Package libatlas-base-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on swig; however: Package swig is not installed. pbuilder-satisfydepends-dummy depends on mpb-dev; however: Package mpb-dev is not installed. pbuilder-satisfydepends-dummy depends on mpb; however: Package mpb is not installed. pbuilder-satisfydepends-dummy depends on python-dev; however: Package python-dev is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python-h5py; however: Package python-h5py is not installed. pbuilder-satisfydepends-dummy depends on python-scipy; however: Package python-scipy is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} chrpath{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} groff-base{a} guile-2.2{a} guile-2.2-dev{a} guile-2.2-libs{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libatlas-base-dev{a} libatlas3-base{a} libblas-dev{a} libblas3{a} libbsd0{a} libcroco3{a} libctl-dev{a} libctl7{a} libelf1{a} libevent-2.1-6{a} libevent-core-2.1-6{a} libevent-pthreads-2.1-6{a} libexpat1{a} libexpat1-dev{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libgc-dev{a} libgc1c2{a} libgfortran-8-dev{a} libgfortran5{a} libglib2.0-0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgsl-dev{a} libgsl23{a} libgslcblas0{a} libharminv-dev{a} libharminv3{a} libhdf5-103{a} libhdf5-cpp-103{a} libhdf5-dev{a} libhdf5-openmpi-103{a} libhwloc-plugins{a} libhwloc5{a} libibverbs1{a} libicu63{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} liblapack-dev{a} liblapack3{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnl-3-200{a} libnl-route-3-200{a} libnuma1{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix2{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libreadline-dev{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} mpb{a} mpb-dev{a} mpb-scm{a} ocl-icd-libopencl1{a} pkg-config{a} po-debconf{a} python{a} python-decorator{a} python-dev{a} python-h5py{a} python-minimal{a} python-numpy{a} python-pkg-resources{a} python-scipy{a} python-six{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} readline-common{a} sensible-utils{a} swig{a} swig3.0{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl h5utils ibverbs-providers libarchive-cpio-perl libctl-doc libglib2.0-data libgpm2 libmail-sendmail-perl lynx openmpi-bin python-pil shared-mime-info wget xdg-user-dirs 0 packages upgraded, 128 newly installed, 0 to remove and 0 not upgraded. Need to get 110 MB of archives. After unpacking 409 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 libpython2.7-minimal arm64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 python2.7-minimal arm64 2.7.16-2+deb10u1 [1292 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 python2-minimal arm64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 python-minimal arm64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 libreadline7 arm64 7.0-5 [134 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libpython2.7-stdlib arm64 2.7.16-2+deb10u1 [1890 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 python2.7 arm64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libpython2-stdlib arm64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 libpython-stdlib arm64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 python2 arm64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 python arm64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 chrpath arm64 0.16-2+b1 [16.0 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 libgfortran5 arm64 8.3.0-6 [298 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 libgfortran-8-dev arm64 8.3.0-6 [346 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 gfortran-8 arm64 8.3.0-6 [7861 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 gfortran arm64 4:8.3.0-1 [1420 B] Get: 54 http://deb.debian.org/debian buster/main arm64 libgc1c2 arm64 1:7.6.4-0.4 [214 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 libltdl7 arm64 2.4.6-9 [389 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 guile-2.2-libs arm64 2.2.4+1-2+deb10u1 [4938 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 guile-2.2 arm64 2.2.4+1-2+deb10u1 [20.3 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 libncurses-dev arm64 6.1+20181013-2+deb10u2 [324 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 libncurses5-dev arm64 6.1+20181013-2+deb10u2 [948 B] Get: 60 http://deb.debian.org/debian buster/main arm64 libreadline-dev arm64 7.0-5 [128 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 libltdl-dev arm64 2.4.6-9 [162 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 libgmpxx4ldbl arm64 2:6.1.2+dfsg-4 [22.6 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 libgmp-dev arm64 2:6.1.2+dfsg-4 [608 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 libgc-dev arm64 1:7.6.4-0.4 [371 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 pkg-config arm64 0.29-6 [62.2 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 guile-2.2-dev arm64 2.2.4+1-2+deb10u1 [599 kB] Get: 67 http://deb.debian.org/debian buster/main arm64 hdf5-helpers arm64 1.10.4+repack-10 [35.2 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 libaec0 arm64 1.0.2-1 [18.8 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 libsz2 arm64 1.0.2-1 [6456 B] Get: 70 http://deb.debian.org/debian buster/main arm64 libaec-dev arm64 1.0.2-1 [17.1 kB] Get: 71 http://deb.debian.org/debian buster/main arm64 libatlas3-base arm64 3.10.3-8 [2409 kB] Get: 72 http://deb.debian.org/debian buster/main arm64 libatlas-base-dev arm64 3.10.3-8 [2954 kB] Get: 73 http://deb.debian.org/debian buster/main arm64 libblas3 arm64 3.8.0-2 [100 kB] Get: 74 http://deb.debian.org/debian buster/main arm64 libblas-dev arm64 3.8.0-2 [105 kB] Get: 75 http://deb.debian.org/debian buster/main arm64 libctl7 arm64 4.1.4-3 [94.8 kB] Get: 76 http://deb.debian.org/debian buster/main arm64 libctl-dev arm64 4.1.4-3 [65.7 kB] Get: 77 http://deb.debian.org/debian buster/main arm64 libevent-2.1-6 arm64 2.1.8-stable-4 [150 kB] Get: 78 http://deb.debian.org/debian buster/main arm64 libevent-core-2.1-6 arm64 2.1.8-stable-4 [112 kB] Get: 79 http://deb.debian.org/debian buster/main arm64 libevent-pthreads-2.1-6 arm64 2.1.8-stable-4 [47.7 kB] Get: 80 http://deb.debian.org/debian buster/main arm64 libexpat1-dev arm64 2.2.6-2+deb10u1 [128 kB] Get: 81 http://deb.debian.org/debian buster/main arm64 libfftw3-double3 arm64 3.3.8-2 [385 kB] Get: 82 http://deb.debian.org/debian buster/main arm64 libfftw3-long3 arm64 3.3.8-2 [526 kB] Get: 83 http://deb.debian.org/debian buster/main arm64 libfftw3-single3 arm64 3.3.8-2 [630 kB] Get: 84 http://deb.debian.org/debian buster/main arm64 libfftw3-bin arm64 3.3.8-2 [47.4 kB] Get: 85 http://deb.debian.org/debian buster/main arm64 libfftw3-dev arm64 3.3.8-2 [1455 kB] Get: 86 http://deb.debian.org/debian buster/main arm64 libgslcblas0 arm64 2.5+dfsg-6 [69.5 kB] Get: 87 http://deb.debian.org/debian buster/main arm64 libgsl23 arm64 2.5+dfsg-6 [760 kB] Get: 88 http://deb.debian.org/debian buster/main arm64 libgsl-dev arm64 2.5+dfsg-6 [938 kB] Get: 89 http://deb.debian.org/debian buster/main arm64 liblapack3 arm64 3.8.0-2 [1489 kB] Get: 90 http://deb.debian.org/debian buster/main arm64 libharminv3 arm64 1.4.1-2 [13.7 kB] Get: 91 http://deb.debian.org/debian buster/main arm64 libharminv-dev arm64 1.4.1-2 [4916 B] Get: 92 http://deb.debian.org/debian buster/main arm64 libhdf5-103 arm64 1.10.4+repack-10 [1168 kB] Get: 93 http://deb.debian.org/debian buster/main arm64 libhdf5-cpp-103 arm64 1.10.4+repack-10 [132 kB] Get: 94 http://deb.debian.org/debian buster/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1 [210 kB] Get: 95 http://deb.debian.org/debian buster/main arm64 libjpeg62-turbo arm64 1:1.5.2-2+b1 [115 kB] Get: 96 http://deb.debian.org/debian buster/main arm64 libjpeg62-turbo-dev arm64 1:1.5.2-2+b1 [186 kB] Get: 97 http://deb.debian.org/debian buster/main arm64 libjpeg-dev all 1:1.5.2-2 [57.5 kB] Get: 98 http://deb.debian.org/debian buster/main arm64 libhdf5-dev arm64 1.10.4+repack-10 [2683 kB] Get: 99 http://deb.debian.org/debian buster/main arm64 libnuma1 arm64 2.0.12-1 [25.6 kB] Get: 100 http://deb.debian.org/debian buster/main arm64 libhwloc5 arm64 1.11.12-3 [97.9 kB] Get: 101 http://deb.debian.org/debian buster/main arm64 libnl-3-200 arm64 3.4.0-1 [54.9 kB] Get: 102 http://deb.debian.org/debian buster/main arm64 libnl-route-3-200 arm64 3.4.0-1 [134 kB] Get: 103 http://deb.debian.org/debian buster/main arm64 libibverbs1 arm64 22.1-1 [47.8 kB] Get: 104 http://deb.debian.org/debian buster/main arm64 libpciaccess0 arm64 0.14-1 [51.0 kB] Get: 105 http://deb.debian.org/debian buster/main arm64 ocl-icd-libopencl1 arm64 2.2.12-2 [37.4 kB] Get: 106 http://deb.debian.org/debian buster/main arm64 libhwloc-plugins arm64 1.11.12-3 [16.9 kB] Get: 107 http://deb.debian.org/debian buster/main arm64 libpmix2 arm64 3.1.2-3 [455 kB] Get: 108 http://deb.debian.org/debian buster/main arm64 libopenmpi3 arm64 3.1.3-11 [1996 kB] Get: 109 http://deb.debian.org/debian buster/main arm64 libhdf5-openmpi-103 arm64 1.10.4+repack-10 [1203 kB] Get: 110 http://deb.debian.org/debian buster/main arm64 liblapack-dev arm64 3.8.0-2 [1524 kB] Get: 111 http://deb.debian.org/debian buster/main arm64 libpython2.7 arm64 2.7.16-2+deb10u1 [958 kB] Get: 112 http://deb.debian.org/debian buster/main arm64 libpython2.7-dev arm64 2.7.16-2+deb10u1 [31.5 MB] Get: 113 http://deb.debian.org/debian buster/main arm64 libpython2-dev arm64 2.7.16-1 [20.9 kB] Get: 114 http://deb.debian.org/debian buster/main arm64 libpython-dev arm64 2.7.16-1 [20.9 kB] Get: 115 http://deb.debian.org/debian buster/main arm64 mpb-scm all 1.7.0-5 [14.9 kB] Get: 116 http://deb.debian.org/debian buster/main arm64 mpb arm64 1.7.0-5 [187 kB] Get: 117 http://deb.debian.org/debian buster/main arm64 mpb-dev arm64 1.7.0-5 [10.9 kB] Get: 118 http://deb.debian.org/debian buster/main arm64 python-decorator all 4.3.0-1.1 [14.4 kB] Get: 119 http://deb.debian.org/debian buster/main arm64 python2.7-dev arm64 2.7.16-2+deb10u1 [296 kB] Get: 120 http://deb.debian.org/debian buster/main arm64 python2-dev arm64 2.7.16-1 [1216 B] Get: 121 http://deb.debian.org/debian buster/main arm64 python-dev arm64 2.7.16-1 [1192 B] Get: 122 http://deb.debian.org/debian buster/main arm64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 123 http://deb.debian.org/debian buster/main arm64 python-numpy arm64 1:1.16.2-1 [1975 kB] Get: 124 http://deb.debian.org/debian buster/main arm64 python-six all 1.12.0-1 [15.7 kB] Get: 125 http://deb.debian.org/debian buster/main arm64 python-h5py arm64 2.8.0-3 [572 kB] Get: 126 http://deb.debian.org/debian buster/main arm64 python-scipy arm64 1.1.0-7 [9327 kB] Get: 127 http://deb.debian.org/debian buster/main arm64 swig3.0 arm64 3.0.12-2 [1321 kB] Get: 128 http://deb.debian.org/debian buster/main arm64 swig arm64 3.0.12-2 [310 kB] Fetched 110 MB in 8s (13.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_arm64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../04-libpipeline1_1.5.1-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_arm64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:arm64. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_arm64.deb ... Unpacking libpython2.7-minimal:arm64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_arm64.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../08-python2-minimal_2.7.16-1_arm64.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../09-python-minimal_2.7.16-1_arm64.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:arm64. Preparing to unpack .../10-libssl1.1_1.1.1d-0+deb10u3_arm64.deb ... Unpacking libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Selecting previously unselected package mime-support. Preparing to unpack .../11-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../12-libexpat1_2.2.6-2+deb10u1_arm64.deb ... Unpacking libexpat1:arm64 (2.2.6-2+deb10u1) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:arm64. Preparing to unpack .../14-libreadline7_7.0-5_arm64.deb ... Unpacking libreadline7:arm64 (7.0-5) ... Selecting previously unselected package libpython2.7-stdlib:arm64. Preparing to unpack .../15-libpython2.7-stdlib_2.7.16-2+deb10u1_arm64.deb ... Unpacking libpython2.7-stdlib:arm64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../16-python2.7_2.7.16-2+deb10u1_arm64.deb ... Unpacking python2.7 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-stdlib:arm64. Preparing to unpack .../17-libpython2-stdlib_2.7.16-1_arm64.deb ... Unpacking libpython2-stdlib:arm64 (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:arm64. Preparing to unpack .../18-libpython-stdlib_2.7.16-1_arm64.deb ... Unpacking libpython-stdlib:arm64 (2.7.16-1) ... Setting up libpython2.7-minimal:arm64 (2.7.16-2+deb10u1) ... Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20631 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_arm64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20664 files and directories currently installed.) Preparing to unpack .../000-python_2.7.16-1_arm64.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../003-libmagic1_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.19.8.1-9_arm64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../006-libsigsegv2_2.12-2_arm64.deb ... Unpacking libsigsegv2:arm64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../007-m4_1.4.18-2_arm64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../008-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../009-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../010-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../011-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package chrpath. Preparing to unpack .../012-chrpath_0.16-2+b1_arm64.deb ... Unpacking chrpath (0.16-2+b1) ... Selecting previously unselected package libtool. Preparing to unpack .../013-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../014-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../015-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../016-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../017-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../018-libelf1_0.176-1.1_arm64.deb ... Unpacking libelf1:arm64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../019-dwz_0.12-3_arm64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../020-libglib2.0-0_2.58.3-2+deb10u2_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:arm64. Preparing to unpack .../021-libicu63_63.1-6+deb10u1_arm64.deb ... Unpacking libicu63:arm64 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../022-libxml2_2.9.4+dfsg1-7+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:arm64. Preparing to unpack .../023-libcroco3_0.6.12-3_arm64.deb ... Unpacking libcroco3:arm64 (0.6.12-3) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../024-libncurses6_6.1+20181013-2+deb10u2_arm64.deb ... Unpacking libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../025-gettext_0.19.8.1-9_arm64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../026-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../027-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../028-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../029-libgfortran5_8.3.0-6_arm64.deb ... Unpacking libgfortran5:arm64 (8.3.0-6) ... Selecting previously unselected package libgfortran-8-dev:arm64. Preparing to unpack .../030-libgfortran-8-dev_8.3.0-6_arm64.deb ... Unpacking libgfortran-8-dev:arm64 (8.3.0-6) ... Selecting previously unselected package gfortran-8. Preparing to unpack .../031-gfortran-8_8.3.0-6_arm64.deb ... Unpacking gfortran-8 (8.3.0-6) ... Selecting previously unselected package gfortran. Preparing to unpack .../032-gfortran_4%3a8.3.0-1_arm64.deb ... Unpacking gfortran (4:8.3.0-1) ... Selecting previously unselected package libgc1c2:arm64. Preparing to unpack .../033-libgc1c2_1%3a7.6.4-0.4_arm64.deb ... Unpacking libgc1c2:arm64 (1:7.6.4-0.4) ... Selecting previously unselected package libltdl7:arm64. Preparing to unpack .../034-libltdl7_2.4.6-9_arm64.deb ... Unpacking libltdl7:arm64 (2.4.6-9) ... Selecting previously unselected package guile-2.2-libs:arm64. Preparing to unpack .../035-guile-2.2-libs_2.2.4+1-2+deb10u1_arm64.deb ... Unpacking guile-2.2-libs:arm64 (2.2.4+1-2+deb10u1) ... Selecting previously unselected package guile-2.2. Preparing to unpack .../036-guile-2.2_2.2.4+1-2+deb10u1_arm64.deb ... Unpacking guile-2.2 (2.2.4+1-2+deb10u1) ... Selecting previously unselected package libncurses-dev:arm64. Preparing to unpack .../037-libncurses-dev_6.1+20181013-2+deb10u2_arm64.deb ... Unpacking libncurses-dev:arm64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package libncurses5-dev:arm64. Preparing to unpack .../038-libncurses5-dev_6.1+20181013-2+deb10u2_arm64.deb ... Unpacking libncurses5-dev:arm64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package libreadline-dev:arm64. Preparing to unpack .../039-libreadline-dev_7.0-5_arm64.deb ... Unpacking libreadline-dev:arm64 (7.0-5) ... Selecting previously unselected package libltdl-dev:arm64. Preparing to unpack .../040-libltdl-dev_2.4.6-9_arm64.deb ... Unpacking libltdl-dev:arm64 (2.4.6-9) ... Selecting previously unselected package libgmpxx4ldbl:arm64. Preparing to unpack .../041-libgmpxx4ldbl_2%3a6.1.2+dfsg-4_arm64.deb ... Unpacking libgmpxx4ldbl:arm64 (2:6.1.2+dfsg-4) ... Selecting previously unselected package libgmp-dev:arm64. Preparing to unpack .../042-libgmp-dev_2%3a6.1.2+dfsg-4_arm64.deb ... Unpacking libgmp-dev:arm64 (2:6.1.2+dfsg-4) ... Selecting previously unselected package libgc-dev:arm64. Preparing to unpack .../043-libgc-dev_1%3a7.6.4-0.4_arm64.deb ... Unpacking libgc-dev:arm64 (1:7.6.4-0.4) ... Selecting previously unselected package pkg-config. Preparing to unpack .../044-pkg-config_0.29-6_arm64.deb ... Unpacking pkg-config (0.29-6) ... Selecting previously unselected package guile-2.2-dev. Preparing to unpack .../045-guile-2.2-dev_2.2.4+1-2+deb10u1_arm64.deb ... Unpacking guile-2.2-dev (2.2.4+1-2+deb10u1) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../046-hdf5-helpers_1.10.4+repack-10_arm64.deb ... Unpacking hdf5-helpers (1.10.4+repack-10) ... Selecting previously unselected package libaec0:arm64. Preparing to unpack .../047-libaec0_1.0.2-1_arm64.deb ... Unpacking libaec0:arm64 (1.0.2-1) ... Selecting previously unselected package libsz2:arm64. Preparing to unpack .../048-libsz2_1.0.2-1_arm64.deb ... Unpacking libsz2:arm64 (1.0.2-1) ... Selecting previously unselected package libaec-dev:arm64. Preparing to unpack .../049-libaec-dev_1.0.2-1_arm64.deb ... Unpacking libaec-dev:arm64 (1.0.2-1) ... Selecting previously unselected package libatlas3-base:arm64. Preparing to unpack .../050-libatlas3-base_3.10.3-8_arm64.deb ... Unpacking libatlas3-base:arm64 (3.10.3-8) ... Selecting previously unselected package libatlas-base-dev:arm64. Preparing to unpack .../051-libatlas-base-dev_3.10.3-8_arm64.deb ... Unpacking libatlas-base-dev:arm64 (3.10.3-8) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../052-libblas3_3.8.0-2_arm64.deb ... Unpacking libblas3:arm64 (3.8.0-2) ... Selecting previously unselected package libblas-dev:arm64. Preparing to unpack .../053-libblas-dev_3.8.0-2_arm64.deb ... Unpacking libblas-dev:arm64 (3.8.0-2) ... Selecting previously unselected package libctl7. Preparing to unpack .../054-libctl7_4.1.4-3_arm64.deb ... Unpacking libctl7 (4.1.4-3) ... Selecting previously unselected package libctl-dev. Preparing to unpack .../055-libctl-dev_4.1.4-3_arm64.deb ... Unpacking libctl-dev (4.1.4-3) ... Selecting previously unselected package libevent-2.1-6:arm64. Preparing to unpack .../056-libevent-2.1-6_2.1.8-stable-4_arm64.deb ... Unpacking libevent-2.1-6:arm64 (2.1.8-stable-4) ... Selecting previously unselected package libevent-core-2.1-6:arm64. Preparing to unpack .../057-libevent-core-2.1-6_2.1.8-stable-4_arm64.deb ... Unpacking libevent-core-2.1-6:arm64 (2.1.8-stable-4) ... Selecting previously unselected package libevent-pthreads-2.1-6:arm64. Preparing to unpack .../058-libevent-pthreads-2.1-6_2.1.8-stable-4_arm64.deb ... Unpacking libevent-pthreads-2.1-6:arm64 (2.1.8-stable-4) ... Selecting previously unselected package libexpat1-dev:arm64. Preparing to unpack .../059-libexpat1-dev_2.2.6-2+deb10u1_arm64.deb ... Unpacking libexpat1-dev:arm64 (2.2.6-2+deb10u1) ... Selecting previously unselected package libfftw3-double3:arm64. Preparing to unpack .../060-libfftw3-double3_3.3.8-2_arm64.deb ... Unpacking libfftw3-double3:arm64 (3.3.8-2) ... Selecting previously unselected package libfftw3-long3:arm64. Preparing to unpack .../061-libfftw3-long3_3.3.8-2_arm64.deb ... Unpacking libfftw3-long3:arm64 (3.3.8-2) ... Selecting previously unselected package libfftw3-single3:arm64. Preparing to unpack .../062-libfftw3-single3_3.3.8-2_arm64.deb ... Unpacking libfftw3-single3:arm64 (3.3.8-2) ... Selecting previously unselected package libfftw3-bin. Preparing to unpack .../063-libfftw3-bin_3.3.8-2_arm64.deb ... Unpacking libfftw3-bin (3.3.8-2) ... Selecting previously unselected package libfftw3-dev:arm64. Preparing to unpack .../064-libfftw3-dev_3.3.8-2_arm64.deb ... Unpacking libfftw3-dev:arm64 (3.3.8-2) ... Selecting previously unselected package libgslcblas0:arm64. Preparing to unpack .../065-libgslcblas0_2.5+dfsg-6_arm64.deb ... Unpacking libgslcblas0:arm64 (2.5+dfsg-6) ... Selecting previously unselected package libgsl23:arm64. Preparing to unpack .../066-libgsl23_2.5+dfsg-6_arm64.deb ... Unpacking libgsl23:arm64 (2.5+dfsg-6) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../067-libgsl-dev_2.5+dfsg-6_arm64.deb ... Unpacking libgsl-dev (2.5+dfsg-6) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../068-liblapack3_3.8.0-2_arm64.deb ... Unpacking liblapack3:arm64 (3.8.0-2) ... Selecting previously unselected package libharminv3. Preparing to unpack .../069-libharminv3_1.4.1-2_arm64.deb ... Unpacking libharminv3 (1.4.1-2) ... Selecting previously unselected package libharminv-dev. Preparing to unpack .../070-libharminv-dev_1.4.1-2_arm64.deb ... Unpacking libharminv-dev (1.4.1-2) ... Selecting previously unselected package libhdf5-103:arm64. Preparing to unpack .../071-libhdf5-103_1.10.4+repack-10_arm64.deb ... Unpacking libhdf5-103:arm64 (1.10.4+repack-10) ... Selecting previously unselected package libhdf5-cpp-103:arm64. Preparing to unpack .../072-libhdf5-cpp-103_1.10.4+repack-10_arm64.deb ... Unpacking libhdf5-cpp-103:arm64 (1.10.4+repack-10) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../073-zlib1g-dev_1%3a1.2.11.dfsg-1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.11.dfsg-1) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../074-libjpeg62-turbo_1%3a1.5.2-2+b1_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:1.5.2-2+b1) ... Selecting previously unselected package libjpeg62-turbo-dev:arm64. Preparing to unpack .../075-libjpeg62-turbo-dev_1%3a1.5.2-2+b1_arm64.deb ... Unpacking libjpeg62-turbo-dev:arm64 (1:1.5.2-2+b1) ... Selecting previously unselected package libjpeg-dev. Preparing to unpack .../076-libjpeg-dev_1%3a1.5.2-2_all.deb ... Unpacking libjpeg-dev (1:1.5.2-2) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../077-libhdf5-dev_1.10.4+repack-10_arm64.deb ... Unpacking libhdf5-dev (1.10.4+repack-10) ... Selecting previously unselected package libnuma1:arm64. Preparing to unpack .../078-libnuma1_2.0.12-1_arm64.deb ... Unpacking libnuma1:arm64 (2.0.12-1) ... Selecting previously unselected package libhwloc5:arm64. Preparing to unpack .../079-libhwloc5_1.11.12-3_arm64.deb ... Unpacking libhwloc5:arm64 (1.11.12-3) ... Selecting previously unselected package libnl-3-200:arm64. Preparing to unpack .../080-libnl-3-200_3.4.0-1_arm64.deb ... Unpacking libnl-3-200:arm64 (3.4.0-1) ... Selecting previously unselected package libnl-route-3-200:arm64. Preparing to unpack .../081-libnl-route-3-200_3.4.0-1_arm64.deb ... Unpacking libnl-route-3-200:arm64 (3.4.0-1) ... Selecting previously unselected package libibverbs1:arm64. Preparing to unpack .../082-libibverbs1_22.1-1_arm64.deb ... Unpacking libibverbs1:arm64 (22.1-1) ... Selecting previously unselected package libpciaccess0:arm64. Preparing to unpack .../083-libpciaccess0_0.14-1_arm64.deb ... Unpacking libpciaccess0:arm64 (0.14-1) ... Selecting previously unselected package ocl-icd-libopencl1:arm64. Preparing to unpack .../084-ocl-icd-libopencl1_2.2.12-2_arm64.deb ... Unpacking ocl-icd-libopencl1:arm64 (2.2.12-2) ... Selecting previously unselected package libhwloc-plugins:arm64. Preparing to unpack .../085-libhwloc-plugins_1.11.12-3_arm64.deb ... Unpacking libhwloc-plugins:arm64 (1.11.12-3) ... Selecting previously unselected package libpmix2:arm64. Preparing to unpack .../086-libpmix2_3.1.2-3_arm64.deb ... Unpacking libpmix2:arm64 (3.1.2-3) ... Selecting previously unselected package libopenmpi3:arm64. Preparing to unpack .../087-libopenmpi3_3.1.3-11_arm64.deb ... Unpacking libopenmpi3:arm64 (3.1.3-11) ... Selecting previously unselected package libhdf5-openmpi-103:arm64. Preparing to unpack .../088-libhdf5-openmpi-103_1.10.4+repack-10_arm64.deb ... Unpacking libhdf5-openmpi-103:arm64 (1.10.4+repack-10) ... Selecting previously unselected package liblapack-dev:arm64. Preparing to unpack .../089-liblapack-dev_3.8.0-2_arm64.deb ... Unpacking liblapack-dev:arm64 (3.8.0-2) ... Selecting previously unselected package libpython2.7:arm64. Preparing to unpack .../090-libpython2.7_2.7.16-2+deb10u1_arm64.deb ... Unpacking libpython2.7:arm64 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2.7-dev:arm64. Preparing to unpack .../091-libpython2.7-dev_2.7.16-2+deb10u1_arm64.deb ... Unpacking libpython2.7-dev:arm64 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-dev:arm64. Preparing to unpack .../092-libpython2-dev_2.7.16-1_arm64.deb ... Unpacking libpython2-dev:arm64 (2.7.16-1) ... Selecting previously unselected package libpython-dev:arm64. Preparing to unpack .../093-libpython-dev_2.7.16-1_arm64.deb ... Unpacking libpython-dev:arm64 (2.7.16-1) ... Selecting previously unselected package mpb-scm. Preparing to unpack .../094-mpb-scm_1.7.0-5_all.deb ... Unpacking mpb-scm (1.7.0-5) ... Selecting previously unselected package mpb. Preparing to unpack .../095-mpb_1.7.0-5_arm64.deb ... Unpacking mpb (1.7.0-5) ... Selecting previously unselected package mpb-dev. Preparing to unpack .../096-mpb-dev_1.7.0-5_arm64.deb ... Unpacking mpb-dev (1.7.0-5) ... Selecting previously unselected package python-decorator. Preparing to unpack .../097-python-decorator_4.3.0-1.1_all.deb ... Unpacking python-decorator (4.3.0-1.1) ... Selecting previously unselected package python2.7-dev. Preparing to unpack .../098-python2.7-dev_2.7.16-2+deb10u1_arm64.deb ... Unpacking python2.7-dev (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-dev. Preparing to unpack .../099-python2-dev_2.7.16-1_arm64.deb ... Unpacking python2-dev (2.7.16-1) ... Selecting previously unselected package python-dev. Preparing to unpack .../100-python-dev_2.7.16-1_arm64.deb ... Unpacking python-dev (2.7.16-1) ... Selecting previously unselected package python-pkg-resources. Preparing to unpack .../101-python-pkg-resources_40.8.0-1_all.deb ... Unpacking python-pkg-resources (40.8.0-1) ... Selecting previously unselected package python-numpy. Preparing to unpack .../102-python-numpy_1%3a1.16.2-1_arm64.deb ... Unpacking python-numpy (1:1.16.2-1) ... Selecting previously unselected package python-six. Preparing to unpack .../103-python-six_1.12.0-1_all.deb ... Unpacking python-six (1.12.0-1) ... Selecting previously unselected package python-h5py. Preparing to unpack .../104-python-h5py_2.8.0-3_arm64.deb ... Unpacking python-h5py (2.8.0-3) ... Selecting previously unselected package python-scipy. Preparing to unpack .../105-python-scipy_1.1.0-7_arm64.deb ... Unpacking python-scipy (1.1.0-7) ... Selecting previously unselected package swig3.0. Preparing to unpack .../106-swig3.0_3.0.12-2_arm64.deb ... Unpacking swig3.0 (3.0.12-2) ... Selecting previously unselected package swig. Preparing to unpack .../107-swig_3.0.12-2_arm64.deb ... Unpacking swig (3.0.12-2) ... Setting up libexpat1:arm64 (2.2.6-2+deb10u1) ... Setting up libpipeline1:arm64 (1.5.1-2) ... Setting up mpb-dev (1.7.0-5) ... Setting up libpciaccess0:arm64 (0.14-1) ... Setting up mpb-scm (1.7.0-5) ... Setting up libfftw3-single3:arm64 (3.3.8-2) ... Setting up mime-support (3.62) ... Setting up hdf5-helpers (1.10.4+repack-10) ... Setting up libgslcblas0:arm64 (2.5+dfsg-6) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libgc1c2:arm64 (1:7.6.4-0.4) ... Setting up libglib2.0-0:arm64 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Setting up libmagic1:arm64 (1:5.35-4+deb10u1) ... Setting up libfftw3-long3:arm64 (3.3.8-2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libaec0:arm64 (1.0.2-1) ... Setting up libicu63:arm64 (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libgmpxx4ldbl:arm64 (2:6.1.2+dfsg-4) ... Setting up libexpat1-dev:arm64 (2.2.6-2+deb10u1) ... Setting up libjpeg62-turbo:arm64 (1:1.5.2-2+b1) ... Setting up swig3.0 (3.0.12-2) ... Setting up libjpeg62-turbo-dev:arm64 (1:1.5.2-2+b1) ... Setting up libgsl23:arm64 (2.5+dfsg-6) ... Setting up libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up pkg-config (0.29-6) ... Setting up libltdl7:arm64 (2.4.6-9) ... Setting up libfftw3-double3:arm64 (3.3.8-2) ... Setting up libevent-core-2.1-6:arm64 (2.1.8-stable-4) ... Setting up libgfortran5:arm64 (8.3.0-6) ... Setting up libevent-2.1-6:arm64 (2.1.8-stable-4) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-1) ... Setting up libnuma1:arm64 (2.0.12-1) ... Setting up sensible-utils (0.0.12) ... Setting up ocl-icd-libopencl1:arm64 (2.2.12-2) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up libnl-3-200:arm64 (3.4.0-1) ... Setting up libgc-dev:arm64 (1:7.6.4-0.4) ... Setting up libbsd0:arm64 (0.9.1-2) ... Setting up libelf1:arm64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Setting up chrpath (0.16-2+b1) ... Setting up libsz2:arm64 (1.0.2-1) ... Setting up libreadline7:arm64 (7.0-5) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libgfortran-8-dev:arm64 (8.3.0-6) ... Setting up libevent-pthreads-2.1-6:arm64 (2.1.8-stable-4) ... Setting up libncurses-dev:arm64 (6.1+20181013-2+deb10u2) ... Setting up libgsl-dev (2.5+dfsg-6) ... Setting up swig (3.0.12-2) ... Setting up libgmp-dev:arm64 (2:6.1.2+dfsg-4) ... Setting up libatlas3-base:arm64 (3.10.3-8) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/atlas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/atlas/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libtool (2.4.6-9) ... Setting up libfftw3-bin (3.3.8-2) ... Setting up libhwloc5:arm64 (1.11.12-3) ... Setting up gfortran-8 (8.3.0-6) ... Setting up libaec-dev:arm64 (1.0.2-1) ... Setting up libjpeg-dev (1:1.5.2-2) ... Setting up m4 (1.4.18-2) ... Setting up libreadline-dev:arm64 (7.0-5) ... Setting up libhwloc-plugins:arm64 (1.11.12-3) ... Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libatlas-base-dev:arm64 (3.10.3-8) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/atlas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/atlas/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libnl-route-3-200:arm64 (3.4.0-1) ... Setting up libpython2.7-stdlib:arm64 (2.7.16-2+deb10u1) ... Setting up libblas3:arm64 (3.8.0-2) ... Setting up libhdf5-103:arm64 (1.10.4+repack-10) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:arm64 (0.6.12-3) ... Setting up libharminv3 (1.4.1-2) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libncurses5-dev:arm64 (6.1+20181013-2+deb10u2) ... Setting up libharminv-dev (1.4.1-2) ... Setting up libfftw3-dev:arm64 (3.3.8-2) ... Setting up guile-2.2-libs:arm64 (2.2.4+1-2+deb10u1) ... Setting up libblas-dev:arm64 (3.8.0-2) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:arm64 (22.1-1) ... Setting up libpython2.7:arm64 (2.7.16-2+deb10u1) ... Setting up liblapack3:arm64 (3.8.0-2) ... Setting up libpython2.7-dev:arm64 (2.7.16-2+deb10u1) ... Setting up gettext (0.19.8.1-9) ... Setting up guile-2.2 (2.2.4+1-2+deb10u1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/guile/2.2/bin/guile to provide /usr/bin/guile (guile) in auto mode Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpmix2:arm64 (3.1.2-3) ... Setting up libpython2-stdlib:arm64 (2.7.16-1) ... Setting up libopenmpi3:arm64 (3.1.3-11) ... Setting up libhdf5-cpp-103:arm64 (1.10.4+repack-10) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libltdl-dev:arm64 (2.4.6-9) ... Setting up libpython-stdlib:arm64 (2.7.16-1) ... Setting up libctl7 (4.1.4-3) ... Setting up guile-2.2-dev (2.2.4+1-2+deb10u1) ... update-alternatives: using /usr/bin/guile-config-2.2 to provide /usr/bin/guile-config (guile-config) in auto mode Setting up libhdf5-openmpi-103:arm64 (1.10.4+repack-10) ... Setting up libhdf5-dev (1.10.4+repack-10) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up liblapack-dev:arm64 (3.8.0-2) ... Setting up libpython2-dev:arm64 (2.7.16-1) ... Setting up python (2.7.16-1) ... Setting up python2.7-dev (2.7.16-2+deb10u1) ... Setting up python2-dev (2.7.16-1) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up libctl-dev (4.1.4-3) ... Setting up python-decorator (4.3.0-1.1) ... Setting up libpython-dev:arm64 (2.7.16-1) ... Setting up python-six (1.12.0-1) ... Setting up mpb (1.7.0-5) ... Setting up python-dev (2.7.16-1) ... Setting up python-numpy (1:1.16.2-1) ... Setting up python-scipy (1.1.0-7) ... Setting up python-h5py (2.8.0-3) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/meep-1.7.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package meep dpkg-buildpackage: info: source version 1.7.0-3 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by Thorsten Alteholz dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with autoreconf debian/rules override_dh_clean make[1]: Entering directory '/build/meep-1.7.0' # we do not need this anymore rm -f tests/latest_output dh_clean make[1]: Leaving directory '/build/meep-1.7.0' debian/rules build dh build --with autoreconf dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:66: installing './compile' configure.ac:66: installing './config.guess' configure.ac:66: installing './config.sub' configure.ac:11: installing './install-sh' configure.ac:11: installing './missing' libmeepgeom/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' python/Makefile.am:115: installing './py-compile' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/meep-1.7.0' F77=gfortran dh_auto_configure -- --host=aarch64-linux-gnu --build=aarch64-linux-gnu --prefix=/usr --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --with-libctl=/usr/share/libctl --with-gcc-arch=no --enable-shared --with-pic --enable-cxx --enable-maintainer-mode ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu --build=aarch64-linux-gnu --prefix=/usr --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --with-libctl=/usr/share/libctl --with-gcc-arch=no --enable-shared --with-pic --enable-cxx --enable-maintainer-mode configure: WARNING: unrecognized options: --enable-cxx checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for aarch64-linux-gnu-g++... aarch64-linux-gnu-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether aarch64-linux-gnu-g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of aarch64-linux-gnu-g++... none checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for aarch64-linux-gnu-gcc... aarch64-linux-gnu-gcc checking whether we are using the GNU C compiler... yes checking whether aarch64-linux-gnu-gcc accepts -g... yes checking for aarch64-linux-gnu-gcc option to accept ISO C89... none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... yes checking dependency style of aarch64-linux-gnu-gcc... none checking for C++ compiler vendor... gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by aarch64-linux-gnu-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/aarch64-linux-gnu-nm -B checking the name lister (/usr/bin/aarch64-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for aarch64-linux-gnu-objdump... aarch64-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for aarch64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for aarch64-linux-gnu-ar... aarch64-linux-gnu-ar checking for archiver @FILE support... @ checking for aarch64-linux-gnu-strip... aarch64-linux-gnu-strip checking for aarch64-linux-gnu-ranlib... aarch64-linux-gnu-ranlib checking command to parse /usr/bin/aarch64-linux-gnu-nm -B output from aarch64-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for aarch64-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... aarch64-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if aarch64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for aarch64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if aarch64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if aarch64-linux-gnu-gcc static flag -static works... yes checking if aarch64-linux-gnu-gcc supports -c -o file.o... yes checking if aarch64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the aarch64-linux-gnu-gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... aarch64-linux-gnu-g++ -E checking for ld used by aarch64-linux-gnu-g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the aarch64-linux-gnu-g++ linker (/usr/bin/ld) supports shared libraries... yes checking for aarch64-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if aarch64-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if aarch64-linux-gnu-g++ static flag -static works... yes checking if aarch64-linux-gnu-g++ supports -c -o file.o... yes checking if aarch64-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the aarch64-linux-gnu-g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for latex2html... no configure: WARNING: Cannot find latex2html in your path! checking for sin in -lm... yes checking for fftw_plan_dft_1d in -lfftw3... yes checking for aarch64-linux-gnu-g77... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for sgemm_... no checking for ATL_xerbla in -latlas... yes checking for sgemm_ in -lf77blas... yes checking for cblas_dgemm in -lcblas... yes checking for cheev_... no checking for cheev_ in -llapack... yes checking for pkg-config... /usr/bin/pkg-config checking for harminv >= 1.1... yes checking HARMINV_CFLAGS... checking HARMINV_LIBS... -lharminv checking mpb.h usability... yes checking mpb.h presence... yes checking for mpb.h... yes checking for maxwell_target_operator1 in -lmpb... yes checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_sf_bessel_Jn in -lgsl... yes checking for deflate in -lz... yes checking for H5Pcreate in -lhdf5... yes checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for guile-config... guile-config checking if linking to guile works... yes checking libguile.h usability... yes checking libguile.h presence... yes checking for libguile.h... yes checking guile/gh.h usability... no checking guile/gh.h presence... no checking for guile/gh.h... no checking for scm_make_smob_type... yes checking for SCM_SMOB_PREDICATE... no checking for SCM_SMOB_DATA... no checking for SCM_NEWSMOB... no checking how to activate readline in Guile... ice-9 readline checking for libctl dir... /usr/share/libctl checking for gen-ctl-io... gen-ctl-io checking for ctl_get_vector3 in -lctl... yes checking ctl.h usability... yes checking ctl.h presence... yes checking for ctl.h... yes checking whether libctl version is at least 4.1.0... ok checking for libctl_quiet feature... yes checking for vector3_dot in -lctlgeom... yes checking libGDSII.h usability... no checking libGDSII.h presence... no checking for libGDSII.h... no checking for feenableexcept... yes checking whether feenableexcept declaration is usable... yes checking whether to catch and ignore SIGFPE signals... yes checking whether time.h and sys/time.h may both be included... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for BSDgettimeofday... no checking for gettimeofday... yes checking for cblas_ddot... yes checking for cblas_daxpy... yes checking for jn... yes checking for C/C++ restrict keyword... __restrict checking for python... /usr/bin/python checking for python version... 2.7 checking for python platform... linux2 checking for python script directory... ${prefix}/lib/python2.7/dist-packages checking for python extension module directory... ${exec_prefix}/lib/python2.7/dist-packages checking for Python include directory... /usr/include/python2.7 checking Python.h usability... yes checking Python.h presence... yes checking for Python.h... yes checking for Numpy include directory... /usr/lib/python2.7/dist-packages/numpy/core/include checking for numpy/arrayobject.h... yes checking for coverage module... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating meep-pkgconfig config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating scheme/Makefile config.status: creating scheme/meep.scm config.status: creating libmeepgeom/Makefile config.status: creating libpympb/Makefile config.status: creating python/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --enable-cxx make[1]: Leaving directory '/build/meep-1.7.0' dh_auto_build make -j8 make[1]: Entering directory '/build/meep-1.7.0' make all-recursive make[2]: Entering directory '/build/meep-1.7.0' Making all in src make[3]: Entering directory '/build/meep-1.7.0/src' make sphere_quad (echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; sed 's/LOOP_OVER/S1LOOP_OVER/g' ../src/step_generic.cpp | sed 's/step_curl/step_curl_stride1/' | sed 's/step_update_EDHB/step_update_EDHB_stride1/' | sed 's/step_beta/step_beta_stride1/') > step_generic_stride1.cpp make[4]: Entering directory '/build/meep-1.7.0/src' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o sphere-quad.o sphere-quad.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o sphere_quad sphere-quad.o -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o sphere_quad sphere-quad.o -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm make[4]: Leaving directory '/build/meep-1.7.0/src' (echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; ../src/sphere_quad) > sphere-quad.h make all-am make[4]: Entering directory '/build/meep-1.7.0/src' /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o array_slice.lo array_slice.cpp /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o anisotropic_averaging.lo anisotropic_averaging.cpp /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bands.lo bands.cpp /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o boundaries.lo boundaries.cpp /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bicgstab.lo bicgstab.cpp /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o casimir.lo casimir.cpp /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o control_c.lo control_c.cpp /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o cw_fields.lo cw_fields.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c array_slice.cpp -fPIC -DPIC -o .libs/array_slice.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bands.cpp -fPIC -DPIC -o .libs/bands.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c control_c.cpp -fPIC -DPIC -o .libs/control_c.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c boundaries.cpp -fPIC -DPIC -o .libs/boundaries.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c anisotropic_averaging.cpp -fPIC -DPIC -o .libs/anisotropic_averaging.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c cw_fields.cpp -fPIC -DPIC -o .libs/cw_fields.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c casimir.cpp -fPIC -DPIC -o .libs/casimir.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bicgstab.cpp -fPIC -DPIC -o .libs/bicgstab.o boundaries.cpp: In member function 'meep::ivec meep::fields::ilattice_vector(meep::direction) const': boundaries.cpp:68:5: warning: this statement may fall through [-Wimplicit-fallthrough=] switch (d) { ^~~~~~ boundaries.cpp:73:3: note: here case D3: ^~~~ libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bands.cpp -fPIC -DPIC -o bands.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c control_c.cpp -fPIC -DPIC -o control_c.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bicgstab.cpp -fPIC -DPIC -o bicgstab.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c casimir.cpp -fPIC -DPIC -o casimir.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o dft.lo dft.cpp /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o dft_ldos.lo dft_ldos.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft.cpp -fPIC -DPIC -o .libs/dft.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft_ldos.cpp -fPIC -DPIC -o .libs/dft_ldos.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c array_slice.cpp -fPIC -DPIC -o array_slice.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o energy_and_flux.lo energy_and_flux.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c energy_and_flux.cpp -fPIC -DPIC -o .libs/energy_and_flux.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c cw_fields.cpp -fPIC -DPIC -o cw_fields.o >/dev/null 2>&1 dft.cpp: In function 'cdouble* meep::collapse_empty_dimensions(cdouble*, int*, int*, meep::volume)': dft.cpp:916:54: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'cdouble' {aka 'struct std::complex'}; use assignment or value-initialization instead [-Wclass-memaccess] memset(reduced_array,0,reduced_size*sizeof(cdouble)); ^ In file included from meep/vec.hpp:22, from meep.hpp:24, from dft.cpp:24: /usr/include/c++/8/complex:1221:12: note: 'cdouble' {aka 'struct std::complex'} declared here struct complex ^~~~~~~~~~~~~~~ libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft_ldos.cpp -fPIC -DPIC -o dft_ldos.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o fields.lo fields.cpp energy_and_flux.cpp: In member function 'double meep::fields::flux_in_box_wrongH(meep::direction, const meep::volume&)': energy_and_flux.cpp:219:26: warning: '*((void*)& cH +4)' may be used uninitialized in this function [-Wmaybe-uninitialized] cs[0] = cE[i]; cs[1] = cH[i]; ~~~~~~^~~~~~~ energy_and_flux.cpp:219:26: warning: 'cH' may be used uninitialized in this function [-Wmaybe-uninitialized] energy_and_flux.cpp:219:11: warning: '*((void*)& cE +4)' may be used uninitialized in this function [-Wmaybe-uninitialized] cs[0] = cE[i]; cs[1] = cH[i]; ~~~~~~^~~~~~~ energy_and_flux.cpp:219:11: warning: 'cE' may be used uninitialized in this function [-Wmaybe-uninitialized] libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c boundaries.cpp -fPIC -DPIC -o boundaries.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c fields.cpp -fPIC -DPIC -o .libs/fields.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c energy_and_flux.cpp -fPIC -DPIC -o energy_and_flux.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c anisotropic_averaging.cpp -fPIC -DPIC -o anisotropic_averaging.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o loop_in_chunks.lo loop_in_chunks.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c loop_in_chunks.cpp -fPIC -DPIC -o .libs/loop_in_chunks.o /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o h5fields.lo h5fields.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5fields.cpp -fPIC -DPIC -o .libs/h5fields.o /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o h5file.lo h5file.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5file.cpp -fPIC -DPIC -o .libs/h5file.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft.cpp -fPIC -DPIC -o dft.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c fields.cpp -fPIC -DPIC -o fields.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o initialize.lo initialize.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c initialize.cpp -fPIC -DPIC -o .libs/initialize.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5fields.cpp -fPIC -DPIC -o h5fields.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5file.cpp -fPIC -DPIC -o h5file.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c loop_in_chunks.cpp -fPIC -DPIC -o loop_in_chunks.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c initialize.cpp -fPIC -DPIC -o initialize.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o integrate.lo integrate.cpp /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o integrate2.lo integrate2.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate.cpp -fPIC -DPIC -o .libs/integrate.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate2.cpp -fPIC -DPIC -o .libs/integrate2.o /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o monitor.lo monitor.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c monitor.cpp -fPIC -DPIC -o .libs/monitor.o /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o mympi.lo mympi.cpp /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o multilevel-atom.lo multilevel-atom.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mympi.cpp -fPIC -DPIC -o .libs/mympi.o /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o near2far.lo near2far.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c multilevel-atom.cpp -fPIC -DPIC -o .libs/multilevel-atom.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c near2far.cpp -fPIC -DPIC -o .libs/near2far.o /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o output_directory.lo output_directory.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate.cpp -fPIC -DPIC -o integrate.o >/dev/null 2>&1 monitor.cpp: In member function 'meep::volume meep::fields_chunk::get_field_gv(meep::component) const': monitor.cpp:170:25: warning: this statement may fall through [-Wimplicit-fallthrough=] c = gv.eps_component(); ~~~~~~~~~~~~~~~~^~ monitor.cpp:171:3: note: here default: ^~~~~~~ libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c output_directory.cpp -fPIC -DPIC -o .libs/output_directory.o mympi.cpp: In function 'meep::ivec meep::max_to_all(const meep::ivec&)': mympi.cpp:273:7: warning: variable 'in' set but not used [-Wunused-but-set-variable] int in[5], out[5]; ^~ /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o random.lo random.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mympi.cpp -fPIC -DPIC -o mympi.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c random.cpp -fPIC -DPIC -o .libs/random.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate2.cpp -fPIC -DPIC -o integrate2.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c monitor.cpp -fPIC -DPIC -o monitor.o >/dev/null 2>&1 output_directory.cpp: In member function 'void meep::structure::set_output_directory(const char*)': output_directory.cpp:43:10: warning: ignoring return value of 'int symlink(const char*, const char*)', declared with attribute warn_unused_result [-Wunused-result] symlink(name, symlink_name); ~~~~~~~^~~~~~~~~~~~~~~~~~~~ output_directory.cpp: In function 'const char* meep::make_output_directory(const char*, const char*)': output_directory.cpp:115:32: warning: '.cpp' directive output may be truncated writing 4 bytes into a region of size between 1 and 300 [-Wformat-truncation=] snprintf(sourcename, buflen, "%s.cpp", stripped_name); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from output_directory.cpp:18: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 304 bytes into a destination of size 300 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ output_directory.cpp:125:32: warning: '-out' directive output may be truncated writing 4 bytes into a region of size between 1 and 300 [-Wformat-truncation=] snprintf(outdirname, buflen, "%s-out", basename); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from output_directory.cpp:18: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 304 bytes into a destination of size 300 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ output_directory.cpp:135:32: warning: '%s' directive output may be truncated writing up to 299 bytes into a region of size between 0 and 299 [-Wformat-truncation=] snprintf(outsrcname, buflen, "%s/%s", outdirname, sourcename); ^~~~~~~ ~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from output_directory.cpp:18: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 600 bytes into a destination of size 300 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ output_directory.cpp:131:36: warning: '-out-' directive output may be truncated writing 5 bytes into a region of size between 1 and 300 [-Wformat-truncation=] snprintf(outdirname, buflen, "%s-out-%d", basename, i++); ^~~~~~~~~~~ output_directory.cpp:131:36: note: directive argument in the range [0, 2147483647] In file included from /usr/include/stdio.h:873, from output_directory.cpp:18: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 7 and 315 bytes into a destination of size 300 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c output_directory.cpp -fPIC -DPIC -o output_directory.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c near2far.cpp -fPIC -DPIC -o near2far.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c multilevel-atom.cpp -fPIC -DPIC -o multilevel-atom.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o sources.lo sources.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c random.cpp -fPIC -DPIC -o random.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c sources.cpp -fPIC -DPIC -o .libs/sources.o /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step.lo step.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step.cpp -fPIC -DPIC -o .libs/step.o /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_db.lo step_db.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_db.cpp -fPIC -DPIC -o .libs/step_db.o /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o stress.lo stress.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c stress.cpp -fPIC -DPIC -o .libs/stress.o /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o structure.lo structure.cpp /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o structure_dump.lo structure_dump.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure.cpp -fPIC -DPIC -o .libs/structure.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure_dump.cpp -fPIC -DPIC -o .libs/structure_dump.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step.cpp -fPIC -DPIC -o step.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o susceptibility.lo susceptibility.cpp /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o time.lo time.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c susceptibility.cpp -fPIC -DPIC -o .libs/susceptibility.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c time.cpp -fPIC -DPIC -o .libs/time.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c sources.cpp -fPIC -DPIC -o sources.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c stress.cpp -fPIC -DPIC -o stress.o >/dev/null 2>&1 structure_dump.cpp: In member function 'void meep::structure::dump(const char*)': structure_dump.cpp:256:31: warning: '_' directive output may be truncated writing 1 byte into a region of size between 0 and 9 [-Wformat-truncation=] snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); ^~~~~~~~~~~~~~~~~~~ structure_dump.cpp:256:31: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:873, from structure_dump.cpp:21: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 43 bytes into a destination of size 20 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ susceptibility.cpp:158:13: warning: 'bool meep::lorentzian_unstable(double, double, double)' defined but not used [-Wunused-function] static bool lorentzian_unstable(double omega_0, double gamma, double dt) { ^~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o update_eh.lo update_eh.cpp structure_dump.cpp: In member function 'void meep::structure::load(const char*)': structure_dump.cpp:545:31: warning: '%d' directive output may be truncated writing between 1 and 2 bytes into a region of size between 1 and 10 [-Wformat-truncation=] snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); ^~~~~~~~~~~~~~~~~~~ structure_dump.cpp:545:31: note: directive argument in the range [0, 20] structure_dump.cpp:545:31: note: directive argument in the range [0, 5] In file included from /usr/include/stdio.h:873, from structure_dump.cpp:21: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 24 bytes into a destination of size 20 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_eh.cpp -fPIC -DPIC -o .libs/update_eh.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_db.cpp -fPIC -DPIC -o step_db.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c time.cpp -fPIC -DPIC -o time.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure_dump.cpp -fPIC -DPIC -o structure_dump.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o mpb.lo mpb.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb.cpp -fPIC -DPIC -o .libs/mpb.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c susceptibility.cpp -fPIC -DPIC -o susceptibility.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o update_pols.lo update_pols.cpp /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o vec.lo vec.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_pols.cpp -fPIC -DPIC -o .libs/update_pols.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c vec.cpp -fPIC -DPIC -o .libs/vec.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_eh.cpp -fPIC -DPIC -o update_eh.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_generic.lo step_generic.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic.cpp -fPIC -DPIC -o .libs/step_generic.o /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_generic_stride1.lo step_generic_stride1.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_pols.cpp -fPIC -DPIC -o update_pols.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o .libs/step_generic_stride1.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb.cpp -fPIC -DPIC -o mpb.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure.cpp -fPIC -DPIC -o structure.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c vec.cpp -fPIC -DPIC -o vec.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic.cpp -fPIC -DPIC -o step_generic.o >/dev/null 2>&1 libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o step_generic_stride1.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o libmeep.la -rpath /usr/lib/aarch64-linux-gnu array_slice.lo anisotropic_averaging.lo bands.lo boundaries.lo bicgstab.lo casimir.lo control_c.lo cw_fields.lo dft.lo dft_ldos.lo energy_and_flux.lo fields.lo loop_in_chunks.lo h5fields.lo h5file.lo initialize.lo integrate.lo integrate2.lo monitor.lo mympi.lo multilevel-atom.lo near2far.lo output_directory.lo random.lo sources.lo step.lo step_db.lo stress.lo structure.lo structure_dump.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo step_generic_stride1.lo -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/8/crtbeginS.o .libs/array_slice.o .libs/anisotropic_averaging.o .libs/bands.o .libs/boundaries.o .libs/bicgstab.o .libs/casimir.o .libs/control_c.o .libs/cw_fields.o .libs/dft.o .libs/dft_ldos.o .libs/energy_and_flux.o .libs/fields.o .libs/loop_in_chunks.o .libs/h5fields.o .libs/h5file.o .libs/initialize.o .libs/integrate.o .libs/integrate2.o .libs/monitor.o .libs/mympi.o .libs/multilevel-atom.o .libs/near2far.o .libs/output_directory.o .libs/random.o .libs/sources.o .libs/step.o .libs/step_db.o .libs/stress.o .libs/structure.o .libs/structure_dump.o .libs/susceptibility.o .libs/time.o .libs/update_eh.o .libs/mpb.o .libs/update_pols.o .libs/vec.o .libs/step_generic.o .libs/step_generic_stride1.o -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/8/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,-soname -Wl,libmeep.so.12 -o .libs/libmeep.so.12.0.0 libtool: link: (cd ".libs" && rm -f "libmeep.so.12" && ln -s "libmeep.so.12.0.0" "libmeep.so.12") libtool: link: (cd ".libs" && rm -f "libmeep.so" && ln -s "libmeep.so.12.0.0" "libmeep.so") libtool: link: aarch64-linux-gnu-ar cru .libs/libmeep.a array_slice.o anisotropic_averaging.o bands.o boundaries.o bicgstab.o casimir.o control_c.o cw_fields.o dft.o dft_ldos.o energy_and_flux.o fields.o loop_in_chunks.o h5fields.o h5file.o initialize.o integrate.o integrate2.o monitor.o mympi.o multilevel-atom.o near2far.o output_directory.o random.o sources.o step.o step_db.o stress.o structure.o structure_dump.o susceptibility.o time.o update_eh.o mpb.o update_pols.o vec.o step_generic.o step_generic_stride1.o aarch64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: aarch64-linux-gnu-ranlib .libs/libmeep.a libtool: link: ( cd ".libs" && rm -f "libmeep.la" && ln -s "../libmeep.la" "libmeep.la" ) make[4]: Leaving directory '/build/meep-1.7.0/src' make[3]: Leaving directory '/build/meep-1.7.0/src' Making all in tests make[3]: Entering directory '/build/meep-1.7.0/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/meep-1.7.0/tests' Making all in scheme make[3]: Entering directory '/build/meep-1.7.0/scheme' gen-ctl-io --cxx --header -o ctl-io.h meep.scm /usr/share/libctl gen-ctl-io --cxx --swig -o ctl-io.i meep.scm /usr/share/libctl (echo "// AUTOMATICALLY GENERATED -- DO NOT EDIT"; perl -pe 's/^ *class +([A-Za-z_0-9:]*)( *| *:[^{]*){.*$/%rename(meep_\1) meep::\1;/' ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp | grep "%rename" | sort -u; echo; grep -hv typedef ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp | perl -pe 's/(inline|const|extern|static) +//g' | perl -pe 's/^[A-Za-z_0-9:<>]+[* ]+([A-Za-z_0-9:]*) *\(.*$/%rename(meep_\1) meep::\1;/' | grep "%rename" | sort -u; ) > meep_renames.i (echo "// AUTOMATICALLY GENERATED -- DO NOT EDIT"; for f in ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp; do egrep "^enum" $f | perl -pe 's/enum +([A-Za-z_0-9:]+).*$/\1/g' | while read enum; do cat $f | tr -d '\n' | perl -pe 's/.*enum +'${enum}' *{([^}]*)}.*/\1/g' | perl -pe 's/= *[0-9]+//g' |tr -d ' \t' | tr ',' '\n' | perl -pe 's/^(.*)$/'"%rename(meep_${enum}_\1) meep::\1;/g"; echo; done; done;) > meep_enum_renames.i (echo "// AUTOMATICALLY GENERATED -- DO NOT EDIT"; grep -h friend ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp | perl -pe 's/^ *friend +[A-Za-z_0-9:<>]+[* ]+([A-Za-z_0-9:]*) *\(.*$/%ignore \1;/' | grep "%ignore" | sort -u;) > meep_swig_bug_workaround.i Unescaped left brace in regex is deprecated here (and will be fatal in Perl 5.30), passed through in regex; marked by <-- HERE in m/^ *class +([A-Za-z_0-9:]*)( *| *:[^{]*){ <-- HERE .*$/ at -e line 1. (perl -pe 's/%rename\(([A-Za-z0-9_]*)\) *([A-Za-z0-9:_]*);$/(define \2 (\1))/' meep_enum_renames.i | perl -pe 's/[A-Za-z0-9:_]*:://g' | perl -pe 's/_/-/g' | perl -pe 's,//,;,'; echo "(define Centered Dielectric)") > meep-enums.scm ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" swig -I../src -c++ -guile -o meep_wrap.cxx ./meep.i ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" cp -f /usr/share/libctl/base/main.c main.cpp cp -f /usr/share/libctl/utils/geom.c geom.cpp gen-ctl-io --cxx --code -o ctl-io.cpp meep.scm /usr/share/libctl ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" patch -p0 meep_wrap.cxx < ./meep_wrap.patch patching file meep_wrap.cxx Hunk #1 succeeded at 778 (offset 27 lines). sed -i.bak '/(SCM_SMOB_PREDICATE(swig_tag, smob) || SCM_SMOB_PREDICATE(swig_collectable_tag, smob))/ s/swig_collectable_tag, smob)/swig_collectable_tag, smob) || SCM_SMOB_PREDICATE((swig_collectable_tag \& ~0xff00), (smob))/' meep_wrap.cxx; make all-am make[4]: Entering directory '/build/meep-1.7.0/scheme' aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-meep.o `test -f 'meep.cpp' || echo './'`meep.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-structure.o `test -f 'structure.cpp' || echo './'`structure.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-meep_wrap.o `test -f 'meep_wrap.cxx' || echo './'`meep_wrap.cxx aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-main.o `test -f 'main.cpp' || echo './'`main.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-geom.o `test -f 'geom.cpp' || echo './'`geom.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-ctl-io.o `test -f 'ctl-io.cpp' || echo './'`ctl-io.cpp main.cpp: In function 'char* make_name(const char*, const char*)': main.cpp:140:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (ndir > 5 && !strcmp(".libs", dir+ndir-5)) ^~ main.cpp:142:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' strcpy(base0, for_base); base = basename(base0); ^~~~~~ In file included from ctl-io.h:7, from main.cpp:37: main.cpp: In function 'void main_entry(void*, int, char**)': main.cpp:202:48: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure ("subplex", (SCM (*)(void)) subplex_scm, 7, 0, 0); ^~~~~~~~~~~ main.cpp:212:23: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] (SCM (*)(void)) adaptive_integration_scm, 6, 0, 0); ^~~~~~~~~~~~~~~~~~~~~~~~ main.cpp:216:23: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] (SCM (*)(void)) cadaptive_integration_scm, 6, 0, 0); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ctl-io.h:7, from ctl-io.cpp:7: ctl-io.cpp: In function 'void ctlio::export_external_functions()': ctl-io.cpp:1920:50: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure("square-basis-aux", (SCM (*)()) square_basis_aux, 2, 0, 0); ^~~~~~~~~~~~~~~~ ctl-io.cpp:1921:63: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure("range-overlap-with-object-aux", (SCM (*)()) range_overlap_with_object_aux, 5, 0, 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:1922:67: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure("display-geometric-object-info-aux", (SCM (*)()) display_geometric_object_info_aux, 2, 0, 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:1923:63: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure("point-in-periodic-object?-aux", (SCM (*)()) point_in_periodic_objectp_aux, 2, 0, 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:1924:54: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure("normal-to-object-aux", (SCM (*)()) normal_to_object_aux, 2, 0, 0); ^~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:1925:54: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure("point-in-object?-aux", (SCM (*)()) point_in_objectp_aux, 2, 0, 0); ^~~~~~~~~~~~~~~~~~~~ geom.cpp: In function 'boolean point_in_fixed_pobjectp(vector3, ctlio::geometric_object*)': geom.cpp:320:7: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ geom.cpp:322:3: note: here case GEOM PRISM: ^~~~ geom.cpp: In function 'vector3 normal_to_fixed_object(vector3, ctlio::geometric_object)': geom.cpp:481:7: warning: this statement may fall through [-Wimplicit-fallthrough=] } // switch ^ geom.cpp:483:3: note: here case GEOM PRISM: ^~~~ geom.cpp: In function 'int intersect_line_with_object(vector3, vector3, ctlio::geometric_object, double*)': geom.cpp:909:8: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ geom.cpp:912:3: note: here default: ^~~~~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_new_meep_dft_flux__SWIG_0(int, scm_unused_struct**)': meep_wrap.cxx:29774:54: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] arg1 = (meep::component const) scm_to_int(argv[0]); ^ meep_wrap.cxx:29777:54: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] arg2 = (meep::component const) scm_to_int(argv[1]); ^ /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/libmeep.la -lctl -lguile-2.2 -lgc -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/.libs/libmeep.so -lctl -lguile-2.2 -lgc -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm make[4]: Leaving directory '/build/meep-1.7.0/scheme' make[3]: Leaving directory '/build/meep-1.7.0/scheme' Making all in libmeepgeom make[3]: Entering directory '/build/meep-1.7.0/libmeepgeom' aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bend-flux-ll.o bend-flux-ll.cpp /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meepgeom.lo meepgeom.cpp /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o GDSIIgeom.lo GDSIIgeom.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o .libs/meepgeom.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o .libs/GDSIIgeom.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o GDSIIgeom.o >/dev/null 2>&1 meepgeom.cpp: In member function 'void meep_geom::geom_epsilon::eff_chi1inv_matrix(meep::component, meep_geom::symmetric_matrix*, const meep::volume&, double, int)': meepgeom.cpp:747:16: warning: 'mat1' may be used uninitialized in this function [-Wmaybe-uninitialized] mat_behind = mat1; ~~~~~~~~~~~^~~~~~ meepgeom.cpp:659:17: note: 'mat1' was declared here material_type mat1, mat2; ^~~~ meepgeom.cpp:714:42: warning: 'mat2' may be used uninitialized in this function [-Wmaybe-uninitialized] (id2 == id || material_type_equal(mat2,mat)))) ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ meepgeom.cpp:659:23: note: 'mat2' was declared here material_type mat1, mat2; ^~~~ libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o meepgeom.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o libmeepgeom.la -rpath /usr/lib/aarch64-linux-gnu meepgeom.lo GDSIIgeom.lo ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/8/crtbeginS.o .libs/meepgeom.o .libs/GDSIIgeom.o -Wl,-rpath -Wl,/build/meep-1.7.0/src/.libs ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/8/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,-soname -Wl,libmeepgeom.so.12 -o .libs/libmeepgeom.so.12.0.0 libtool: link: (cd ".libs" && rm -f "libmeepgeom.so.12" && ln -s "libmeepgeom.so.12.0.0" "libmeepgeom.so.12") libtool: link: (cd ".libs" && rm -f "libmeepgeom.so" && ln -s "libmeepgeom.so.12.0.0" "libmeepgeom.so") libtool: link: aarch64-linux-gnu-ar cru .libs/libmeepgeom.a meepgeom.o GDSIIgeom.o aarch64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: aarch64-linux-gnu-ranlib .libs/libmeepgeom.a libtool: link: ( cd ".libs" && rm -f "libmeepgeom.la" && ln -s "../libmeepgeom.la" "libmeepgeom.la" ) /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o bend-flux-ll bend-flux-ll.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/bend-flux-ll bend-flux-ll.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm make[3]: Leaving directory '/build/meep-1.7.0/libmeepgeom' Making all in libpympb make[3]: Entering directory '/build/meep-1.7.0/libpympb' /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wfatal-errors -I../libmeepgeom -I../src -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o libpympb_la-pympb.lo `test -f 'pympb.cpp' || echo './'`pympb.cpp libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wfatal-errors -I../libmeepgeom -I../src -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c pympb.cpp -fPIC -DPIC -o .libs/libpympb_la-pympb.o pympb.cpp: In member function 'int py_mpb::mode_solver::mean_epsilon(symmetric_matrix*, symmetric_matrix*, mpb_real*, mpb_real, mpb_real, mpb_real, mpb_real, const mpb_real*)': pympb.cpp:379:73: warning: 'mat2' may be used uninitialized in this function [-Wmaybe-uninitialized] !(id2 < id1 && (id2 == id || meep_geom::material_type_equal(mat2, mat)))) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ pympb.cpp:378:73: warning: 'mat1' may be used uninitialized in this function [-Wmaybe-uninitialized] else if (!(id1 < id2 && (id1 == id || meep_geom::material_type_equal(mat1, mat))) && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wfatal-errors -I../libmeepgeom -I../src -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c pympb.cpp -fPIC -DPIC -o libpympb_la-pympb.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o libpympb.la -rpath /usr/lib/aarch64-linux-gnu libpympb_la-pympb.lo ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/8/crtbeginS.o .libs/libpympb_la-pympb.o -Wl,-rpath -Wl,/build/meep-1.7.0/src/.libs ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/8/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,-soname -Wl,libpympb.so.12 -o .libs/libpympb.so.12.0.0 libtool: link: (cd ".libs" && rm -f "libpympb.so.12" && ln -s "libpympb.so.12.0.0" "libpympb.so.12") libtool: link: (cd ".libs" && rm -f "libpympb.so" && ln -s "libpympb.so.12.0.0" "libpympb.so") libtool: link: aarch64-linux-gnu-ar cru .libs/libpympb.a libpympb_la-pympb.o aarch64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: aarch64-linux-gnu-ranlib .libs/libpympb.a libtool: link: ( cd ".libs" && rm -f "libpympb.la" && ln -s "../libpympb.la" "libpympb.la" ) make[3]: Leaving directory '/build/meep-1.7.0/libpympb' Making all in python make[3]: Entering directory '/build/meep-1.7.0/python' swig -Wextra -I../src -I../libmeepgeom -I../libpympb -I.. -outdir . -c++ -python -o meep-python.cpp ./meep.i swig -Wextra -I../src -I../libmeepgeom -I../libpympb -I.. -I../libpympb -outdir . -c++ -python -o mpb-python.cpp ./mpb.i /bin/sh: git: command not found cp meep.py __init__.py echo "__version__ = ''" >> __init__.py if [[ "3.0.12" = 3.0.12 ]]; then \ sed -i.bak '/^if _swig_python_version_info >= (2, 7, 0):/,/^else:/d' __init__.py; \ sed -i.bak 's/ import _meep/from . import _meep/' __init__.py; \ fi if [[ "3.0.12" == 3.0.12 ]]; then \ sed -i.bak '/^if _swig_python_version_info >= (2, 7, 0):/,/^else:/d' mpb.py; \ sed -i.bak 's/ import _mpb/from . import _mpb/' mpb.py; \ fi make all-am make[4]: Entering directory '/build/meep-1.7.0/python' /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _meep_la-meep-python.lo `test -f 'meep-python.cpp' || echo './'`meep-python.cpp /bin/sh ../libtool --tag=CXX --mode=compile aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _mpb_la-mpb-python.lo `test -f 'mpb-python.cpp' || echo './'`mpb-python.cpp /bin/sh: git: command not found cp meep.py __init__.py echo "__version__ = ''" >> __init__.py if [[ "3.0.12" = 3.0.12 ]]; then \ sed -i.bak '/^if _swig_python_version_info >= (2, 7, 0):/,/^else:/d' __init__.py; \ sed -i.bak 's/ import _meep/from . import _meep/' __init__.py; \ fi if [[ "3.0.12" == 3.0.12 ]]; then \ sed -i.bak '/^if _swig_python_version_info >= (2, 7, 0):/,/^else:/d' mpb.py; \ sed -i.bak 's/ import _mpb/from . import _mpb/' mpb.py; \ fi libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cpp -fPIC -DPIC -o .libs/_meep_la-meep-python.o libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb-python.cpp -fPIC -DPIC -o .libs/_mpb_la-mpb-python.o meep-python.cpp: In function 'PyObject* _wrap_abort__varargs__(PyObject*, PyObject*, PyObject*)': meep-python.cpp:18169:103: warning: unused parameter 'varargs' [-Wunused-parameter] SWIGINTERN PyObject *_wrap_abort__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { ~~~~~~~~~~^~~~~~~ meep-python.cpp: In function 'PyObject* _wrap_master_printf__varargs__(PyObject*, PyObject*, PyObject*)': meep-python.cpp:82506:111: warning: unused parameter 'varargs' [-Wunused-parameter] SWIGINTERN PyObject *_wrap_master_printf__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { ~~~~~~~~~~^~~~~~~ meep-python.cpp: In function 'PyObject* _wrap_debug_printf__varargs__(PyObject*, PyObject*, PyObject*)': meep-python.cpp:82545:110: warning: unused parameter 'varargs' [-Wunused-parameter] SWIGINTERN PyObject *_wrap_debug_printf__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { ~~~~~~~~~~^~~~~~~ meep-python.cpp: In function 'PyObject* _wrap_master_fprintf__varargs__(PyObject*, PyObject*, PyObject*)': meep-python.cpp:82584:112: warning: unused parameter 'varargs' [-Wunused-parameter] SWIGINTERN PyObject *_wrap_master_fprintf__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { ~~~~~~~~~~^~~~~~~ libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb-python.cpp -fPIC -DPIC -o _mpb_la-mpb-python.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o _mpb.la -rpath /usr/lib/python2.7/dist-packages/meep/mpb _mpb_la-mpb-python.lo ../libmeepgeom/libmeepgeom.la ../libpympb/libpympb.la -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/8/crtbeginS.o .libs/_mpb_la-mpb-python.o -Wl,-rpath -Wl,/build/meep-1.7.0/libmeepgeom/.libs -Wl,-rpath -Wl,/build/meep-1.7.0/libpympb/.libs ../libmeepgeom/.libs/libmeepgeom.so ../libpympb/.libs/libpympb.so -lctlgeom -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/8/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,-soname -Wl,_mpb.so.12 -o .libs/_mpb.so.12.0.0 libtool: link: (cd ".libs" && rm -f "_mpb.so.12" && ln -s "_mpb.so.12.0.0" "_mpb.so.12") libtool: link: (cd ".libs" && rm -f "_mpb.so" && ln -s "_mpb.so.12.0.0" "_mpb.so") libtool: link: aarch64-linux-gnu-ar cru .libs/_mpb.a _mpb_la-mpb-python.o aarch64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: aarch64-linux-gnu-ranlib .libs/_mpb.a libtool: link: ( cd ".libs" && rm -f "_mpb.la" && ln -s "../_mpb.la" "_mpb.la" ) libtool: compile: aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cpp -fPIC -DPIC -o _meep_la-meep-python.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o _meep.la -rpath /usr/lib/python2.7/dist-packages/meep _meep_la-meep-python.lo ../src/libmeep.la ../libmeepgeom/libmeepgeom.la -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/8/crtbeginS.o .libs/_meep_la-meep-python.o -Wl,-rpath -Wl,/build/meep-1.7.0/src/.libs -Wl,-rpath -Wl,/build/meep-1.7.0/libmeepgeom/.libs ../src/.libs/libmeep.so ../libmeepgeom/.libs/libmeepgeom.so -lctlgeom -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/8/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,-soname -Wl,_meep.so.12 -o .libs/_meep.so.12.0.0 libtool: link: (cd ".libs" && rm -f "_meep.so.12" && ln -s "_meep.so.12.0.0" "_meep.so.12") libtool: link: (cd ".libs" && rm -f "_meep.so" && ln -s "_meep.so.12.0.0" "_meep.so") libtool: link: aarch64-linux-gnu-ar cru .libs/_meep.a _meep_la-meep-python.o aarch64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: aarch64-linux-gnu-ranlib .libs/_meep.a libtool: link: ( cd ".libs" && rm -f "_meep.la" && ln -s "../_meep.la" "_meep.la" ) mkdir -p meep cp __init__.py ./geom.py ./simulation.py ./source.py ./materials.py .libs/_meep.so meep mkdir -p meep/mpb cp .libs/_mpb.so meep/mpb cp ./mpb.py meep/mpb/__init__.py cp ./solver.py ./mpb_data.py meep/mpb make[4]: Leaving directory '/build/meep-1.7.0/python' make[3]: Leaving directory '/build/meep-1.7.0/python' make[3]: Entering directory '/build/meep-1.7.0' cp -f ./meep-pkgconfig meep.pc make[3]: Leaving directory '/build/meep-1.7.0' make[2]: Leaving directory '/build/meep-1.7.0' make[1]: Leaving directory '/build/meep-1.7.0' debian/rules override_dh_auto_test make[1]: Entering directory '/build/meep-1.7.0' find . ./meep.pc ./libtool ./stamp-h1 ./config.h ./meep-pkgconfig ./Makefile ./config.status ./config.log ./test-driver ./depcomp ./py-compile ./Makefile.in ./missing ./install-sh ./config.sub ./config.guess ./compile ./config.h.in ./configure ./aclocal.m4 ./ltmain.sh ./autom4te.cache ./autom4te.cache/output.1 ./autom4te.cache/traces.1 ./autom4te.cache/output.2 ./autom4te.cache/traces.2 ./autom4te.cache/output.0 ./autom4te.cache/traces.0 ./autom4te.cache/requests ./.pc ./.pc/libgeom-fix-include.patch ./.pc/libgeom-fix-include.patch/libpympb ./.pc/libgeom-fix-include.patch/libpympb/pympb.cpp ./.pc/fix-test.patch ./.pc/fix-test.patch/python ./.pc/fix-test.patch/python/simulation.py ./.pc/c++14.patch ./.pc/c++14.patch/libmeepgeom ./.pc/c++14.patch/libmeepgeom/ring-ll.cpp ./.pc/applied-patches ./.pc/.quilt_series ./.pc/.quilt_patches ./.pc/.version ./debian ./debian/autoreconf.after ./debian/autoreconf.before ./debian/watch ./debian/source ./debian/source/lintian-overrides ./debian/source/format ./debian/rules ./debian/python-meep.prerm ./debian/python-meep.postinst ./debian/python-meep.install ./debian/patches ./debian/patches/spelling.patch ./debian/patches/series ./debian/patches/meep-suffix.patch ./debian/patches/libgeom-fix-include.patch ./debian/patches/fix-test.patch ./debian/patches/c++14.patch ./debian/missing-sources ./debian/missing-sources/modernizr-2.8.3.js ./debian/missing-sources/jquery-2.1.1.js ./debian/missing-sources/highlight.js ./debian/meep.manpages ./debian/meep.install ./debian/meep.docs ./debian/meep.1 ./debian/libmeep12.lintian-overrides ./debian/libmeep12.install ./debian/libmeep-dev.install ./debian/docs ./debian/copyright ./debian/control ./debian/compat ./debian/changelog ./tests ./tests/Makefile ./tests/Makefile.in ./tests/two_dimensional.cpp ./tests/three_d.cpp ./tests/symmetry.cpp ./tests/stress_tensor.cpp ./tests/pml.cpp ./tests/physical.cpp ./tests/one_dimensional.cpp ./tests/near2far.cpp ./tests/known_results.cpp ./tests/integrate.cpp ./tests/harmonics.cpp ./tests/h5test.cpp ./tests/flux.cpp ./tests/cylindrical.cpp ./tests/convergence_cyl_waveguide.cpp ./tests/bragg_transmission.cpp ./tests/bench.cpp ./tests/aniso_disp.cpp ./tests/Makefile.am ./tests/2D_convergence.cpp ./src ./src/libmeep.la ./src/step_generic_stride1.lo ./src/step_generic.lo ./src/step_generic_stride1.o ./src/step_generic.o ./src/structure.lo ./src/structure.o ./src/vec.lo ./src/vec.o ./src/mpb.lo ./src/mpb.o ./src/update_eh.lo ./src/update_eh.o ./src/update_pols.lo ./src/update_pols.o ./src/susceptibility.lo ./src/susceptibility.o ./src/step_db.lo ./src/step_db.o ./src/structure_dump.lo ./src/structure_dump.o ./src/time.lo ./src/time.o ./src/sources.lo ./src/sources.o ./src/stress.lo ./src/stress.o ./src/step.lo ./src/step.o ./src/multilevel-atom.lo ./src/near2far.lo ./src/multilevel-atom.o ./src/near2far.o ./src/monitor.lo ./src/integrate2.lo ./src/integrate2.o ./src/monitor.o ./src/random.lo ./src/random.o ./src/output_directory.lo ./src/output_directory.o ./src/mympi.lo ./src/mympi.o ./src/integrate.lo ./src/integrate.o ./src/loop_in_chunks.lo ./src/loop_in_chunks.o ./src/initialize.lo ./src/initialize.o ./src/dft.lo ./src/anisotropic_averaging.lo ./src/dft.o ./src/anisotropic_averaging.o ./src/h5fields.lo ./src/h5fields.o ./src/h5file.lo ./src/h5file.o ./src/fields.lo ./src/fields.o ./src/boundaries.lo ./src/boundaries.o ./src/cw_fields.lo ./src/cw_fields.o ./src/energy_and_flux.lo ./src/energy_and_flux.o ./src/dft_ldos.lo ./src/dft_ldos.o ./src/array_slice.lo ./src/array_slice.o ./src/casimir.lo ./src/casimir.o ./src/bicgstab.lo ./src/bicgstab.o ./src/bands.lo ./src/bands.o ./src/control_c.lo ./src/control_c.o ./src/sphere-quad.h ./src/sphere_quad ./src/.libs ./src/.libs/libmeep.la ./src/.libs/libmeep.lai ./src/.libs/libmeep.a ./src/.libs/libmeep.so ./src/.libs/libmeep.so.12 ./src/.libs/libmeep.so.12.0.0 ./src/.libs/step_generic_stride1.o ./src/.libs/step_generic.o ./src/.libs/vec.o ./src/.libs/structure.o ./src/.libs/mpb.o ./src/.libs/update_pols.o ./src/.libs/update_eh.o ./src/.libs/susceptibility.o ./src/.libs/structure_dump.o ./src/.libs/time.o ./src/.libs/step_db.o ./src/.libs/stress.o ./src/.libs/sources.o ./src/.libs/step.o ./src/.libs/random.o ./src/.libs/multilevel-atom.o ./src/.libs/near2far.o ./src/.libs/output_directory.o ./src/.libs/monitor.o ./src/.libs/integrate2.o ./src/.libs/mympi.o ./src/.libs/integrate.o ./src/.libs/initialize.o ./src/.libs/h5file.o ./src/.libs/loop_in_chunks.o ./src/.libs/h5fields.o ./src/.libs/fields.o ./src/.libs/dft.o ./src/.libs/anisotropic_averaging.o ./src/.libs/energy_and_flux.o ./src/.libs/boundaries.o ./src/.libs/dft_ldos.o ./src/.libs/cw_fields.o ./src/.libs/array_slice.o ./src/.libs/casimir.o ./src/.libs/bicgstab.o ./src/.libs/control_c.o ./src/.libs/bands.o ./src/sphere-quad.o ./src/step_generic_stride1.cpp ./src/Makefile ./src/Makefile.in ./src/vec.cpp ./src/update_pols.cpp ./src/update_eh.cpp ./src/time.cpp ./src/susceptibility.cpp ./src/structure_dump.cpp ./src/structure.cpp ./src/stress.cpp ./src/step_generic.cpp ./src/step_db.cpp ./src/step.cpp ./src/sphere-quad.cpp ./src/sources.cpp ./src/random.cpp ./src/output_directory.cpp ./src/near2far.cpp ./src/mympi.cpp ./src/multilevel-atom.cpp ./src/mpb.cpp ./src/monitor.cpp ./src/meep_internals.hpp ./src/meep ./src/meep/vec.hpp ./src/meep/mympi.hpp ./src/meep.hpp ./src/loop_in_chunks.cpp ./src/integrate2.cpp ./src/integrate.cpp ./src/initialize.cpp ./src/h5file.cpp ./src/h5fields.cpp ./src/fields.cpp ./src/energy_and_flux.cpp ./src/dft_ldos.cpp ./src/dft.cpp ./src/cw_fields.cpp ./src/control_c.cpp ./src/casimir.cpp ./src/boundaries.cpp ./src/bicgstab.hpp ./src/bicgstab.cpp ./src/bands.cpp ./src/array_slice.cpp ./src/anisotropic_averaging.cpp ./src/Makefile.am ./scheme ./scheme/meep ./scheme/.libs ./scheme/.libs/meep ./scheme/meep-meep_wrap.o ./scheme/meep-structure.o ./scheme/meep-geom.o ./scheme/meep-ctl-io.o ./scheme/meep-meep.o ./scheme/meep-main.o ./scheme/meep_wrap.cxx ./scheme/meep_wrap.cxx.bak ./scheme/meep_wrap.cxx.orig ./scheme/ctl-io.cpp ./scheme/geom.cpp ./scheme/main.cpp ./scheme/meep-enums.scm ./scheme/ctl-io.i ./scheme/ctl-io.h ./scheme/meep_swig_bug_workaround.i ./scheme/meep_enum_renames.i ./scheme/meep_renames.i ./scheme/meep.scm ./scheme/Makefile ./scheme/Makefile.in ./scheme/structure.cpp ./scheme/meep_wrap.patch ./scheme/meep_op_renames.i ./scheme/meep.scm.in ./scheme/meep.i ./scheme/meep.cpp ./scheme/meep-ctl.hpp ./scheme/meep-ctl-swig.hpp ./scheme/meep-ctl-const.hpp ./scheme/materials.scm ./scheme/examples ./scheme/examples/wvg_src.ctl ./scheme/examples/solve-cw.ctl ./scheme/examples/ring.ctl ./scheme/examples/ring-cyl.ctl ./scheme/examples/refl-quartz.ctl ./scheme/examples/refl-angular.ctl ./scheme/examples/pw-source.ctl ./scheme/examples/parallel-wvgs-mpb.ctl ./scheme/examples/parallel-wvgs-force.ctl ./scheme/examples/multilevel-atom.ctl ./scheme/examples/mode-coeffs.ctl ./scheme/examples/metal-cavity-ldos.ctl ./scheme/examples/material-dispersion.ctl ./scheme/examples/holey-wvg-cavity.ctl ./scheme/examples/holey-wvg-bands.ctl ./scheme/examples/cavity-farfield.ctl ./scheme/examples/bend-flux.ctl ./scheme/examples/antenna-radiation.ctl ./scheme/examples/3rd-harm-1d.ctl ./scheme/casimir.scm ./scheme/Makefile.am ./python ./python/meep ./python/meep/mpb ./python/meep/mpb/mpb_data.py ./python/meep/mpb/solver.py ./python/meep/mpb/__init__.py ./python/meep/mpb/_mpb.so ./python/meep/_meep.so ./python/meep/materials.py ./python/meep/source.py ./python/meep/simulation.py ./python/meep/geom.py ./python/meep/__init__.py ./python/_meep.la ./python/_meep_la-meep-python.lo ./python/_meep_la-meep-python.o ./python/_mpb.la ./python/_mpb_la-mpb-python.lo ./python/_mpb_la-mpb-python.o ./python/.libs ./python/.libs/_meep.la ./python/.libs/_meep.lai ./python/.libs/_meep.a ./python/.libs/_meep.so ./python/.libs/_meep.so.12 ./python/.libs/_meep.so.12.0.0 ./python/.libs/_meep_la-meep-python.o ./python/.libs/_mpb.la ./python/.libs/_mpb.lai ./python/.libs/_mpb.a ./python/.libs/_mpb.so ./python/.libs/_mpb.so.12 ./python/.libs/_mpb.so.12.0.0 ./python/.libs/_mpb_la-mpb-python.o ./python/mpb.py ./python/mpb.py.bak ./python/__init__.py ./python/__init__.py.bak ./python/mpb-python.cpp ./python/meep.py ./python/meep-python.cpp ./python/Makefile ./python/Makefile.in ./python/simulation.py ./python/vec.i ./python/typemap_utils.cpp ./python/tests ./python/tests/wvg_src.py ./python/tests/utils.py ./python/tests/user_defined_material.py ./python/tests/source.py ./python/tests/simulation.py ./python/tests/ring_cyl.py ./python/tests/ring.py ./python/tests/refl_angular.py ./python/tests/pw_source.py ./python/tests/physical.py ./python/tests/multilevel_atom.py ./python/tests/mpb.py ./python/tests/mode_decomposition.py ./python/tests/mode_coeffs.py ./python/tests/material_dispersion.py ./python/tests/ldos.py ./python/tests/kdom.py ./python/tests/holey_wvg_cavity.py ./python/tests/holey_wvg_bands.py ./python/tests/geom.py ./python/tests/fragment_stats.py ./python/tests/force.py ./python/tests/field_functions.py ./python/tests/dft_fields.py ./python/tests/data ./python/tests/data/tutorial-tot.rpwr.k16.b08.te.h5 ./python/tests/data/tutorial-te-eigenvectors.h5 ./python/tests/data/tutorial-te-eigenvectors-8-1.h5 ./python/tests/data/tutorial-te-eigenvectors-3-3.h5 ./python/tests/data/tutorial-mu.h5 ./python/tests/data/tutorial-h.k16.b08.te.h5 ./python/tests/data/tutorial-flux.v.k11.b08.te.h5 ./python/tests/data/tutorial-epsilon.h5 ./python/tests/data/tutorial-e.k16.b08.z.tm.h5 ./python/tests/data/tutorial-e.k16.b08.te.h5 ./python/tests/data/tutorial-d.k16.b08.te.h5 ./python/tests/data/tutorial-d.k16.b02.te.h5 ./python/tests/data/tutorial-d.k01.b02.te.h5 ./python/tests/data/tutorial-b.k16.b08.te.h5 ./python/tests/data/tutorial-C.k16.b08.te.h5 ./python/tests/data/tri-rods-epsilon-r-m3-n32.h5 ./python/tests/data/tri-rods-e.k11.b08.z.tm.h5 ./python/tests/data/tri-rods-e.k11.b08.z.tm-r-m3-n32.h5 ./python/tests/data/subpixel_avg-epsilon.h5 ./python/tests/data/strip-flux.v.k01.b04.x.h5 ./python/tests/data/line-defect-e.k04.b12.z.tm.h5 ./python/tests/data/hole-slab-h.k01.b09.z.zeven.h5 ./python/tests/data/eps_input_file_test.h5 ./python/tests/data/diamond-dpwr.k06.b05.h5 ./python/tests/data/converted-tri-rods-e.k11.b08.tm.h5 ./python/tests/data/converted-diamond-dpwr.k06.b05.h5 ./python/tests/data/cavity_arrayslice_2d.npy ./python/tests/data/cavity_arrayslice_1d.npy ./python/tests/data/bragg-h.k01.b08.y.tm.h5 ./python/tests/data/bend-flux.gds ./python/tests/data/amp_func_file.h5 ./python/tests/cyl_ellipsoid.py ./python/tests/chunks.py ./python/tests/cavity_arrayslice.py ./python/tests/binary_grating.py ./python/tests/bend_flux.py ./python/tests/antenna_radiation.py ./python/tests/absorber_1d.py ./python/tests/3rd_harm_1d.py ./python/source.py ./python/solver.py ./python/numpy.i ./python/mpb_data.py ./python/mpb.i ./python/meep.i ./python/materials.py ./python/geom.py ./python/examples ./python/examples/wvg-src.py ./python/examples/solve-cw.py ./python/examples/ring.py ./python/examples/ring-mode-overlap.py ./python/examples/ring-cyl.py ./python/examples/refl-quartz.py ./python/examples/refl-angular.py ./python/examples/pw-source.py ./python/examples/parallel-wvgs-mpb.py ./python/examples/parallel-wvgs-force.py ./python/examples/multilevel-atom.py ./python/examples/mpb_tutorial.py ./python/examples/mpb_tri_rods.py ./python/examples/mpb_tri_holes.py ./python/examples/mpb_strip.py ./python/examples/mpb_sq_rods.py ./python/examples/mpb_line_defect.py ./python/examples/mpb_honey_rods.py ./python/examples/mpb_hole_slab.py ./python/examples/mpb_diamond.py ./python/examples/mpb_data_analysis.py ./python/examples/mpb_bragg_sine.py ./python/examples/mpb_bragg.py ./python/examples/mode-decomposition.py ./python/examples/metal-cavity-ldos.py ./python/examples/material-dispersion.py ./python/examples/holey-wvg-cavity.py ./python/examples/holey-wvg-bands.py ./python/examples/cyl-ellipsoid.py ./python/examples/coupler.py ./python/examples/coupler.gds ./python/examples/cavity_arrayslice.py ./python/examples/cavity-farfield.py ./python/examples/binary_grating_oblique.py ./python/examples/binary_grating.py ./python/examples/bend-flux.py ./python/examples/antenna-radiation.py ./python/examples/absorber-1d.py ./python/examples/3rd-harm-1d.py ./python/Makefile.am ./mkdocs.yml ./meep-pkgconfig.in ./m4 ./m4/lt~obsolete.m4 ./m4/ltversion.m4 ./m4/ltsugar.m4 ./m4/ltoptions.m4 ./m4/libtool.m4 ./m4/pkg.m4 ./m4/ax_gcc_x86_cpuid.m4 ./m4/ax_gcc_archflag.m4 ./m4/ax_cxx_maxopt.m4 ./m4/ax_compiler_vendor.m4 ./m4/ax_check_compiler_flags.m4 ./m4/acx_mpi.m4 ./m4/acx_lapack.m4 ./m4/acx_blas.m4 ./libpympb ./libpympb/libpympb.la ./libpympb/libpympb_la-pympb.lo ./libpympb/libpympb_la-pympb.o ./libpympb/.libs ./libpympb/.libs/libpympb.la ./libpympb/.libs/libpympb.lai ./libpympb/.libs/libpympb.a ./libpympb/.libs/libpympb.so ./libpympb/.libs/libpympb.so.12 ./libpympb/.libs/libpympb.so.12.0.0 ./libpympb/.libs/libpympb_la-pympb.o ./libpympb/Makefile ./libpympb/Makefile.in ./libpympb/pympb.cpp ./libpympb/pympb.hpp ./libpympb/Makefile.am ./libmeepgeom ./libmeepgeom/bend-flux-ll ./libmeepgeom/libmeepgeom.la ./libmeepgeom/meepgeom.lo ./libmeepgeom/meepgeom.o ./libmeepgeom/GDSIIgeom.lo ./libmeepgeom/GDSIIgeom.o ./libmeepgeom/bend-flux-ll.o ./libmeepgeom/.libs ./libmeepgeom/.libs/bend-flux-ll ./libmeepgeom/.libs/libmeepgeom.la ./libmeepgeom/.libs/libmeepgeom.lai ./libmeepgeom/.libs/libmeepgeom.a ./libmeepgeom/.libs/libmeepgeom.so ./libmeepgeom/.libs/libmeepgeom.so.12 ./libmeepgeom/.libs/libmeepgeom.so.12.0.0 ./libmeepgeom/.libs/meepgeom.o ./libmeepgeom/.libs/GDSIIgeom.o ./libmeepgeom/Makefile ./libmeepgeom/Makefile.in ./libmeepgeom/ring-ll.cpp ./libmeepgeom/user-defined-material.cpp ./libmeepgeom/pw-source-ll.cpp ./libmeepgeom/meepgeom.hpp ./libmeepgeom/meepgeom.cpp ./libmeepgeom/material_data.hpp ./libmeepgeom/gdsII-3d.gds ./libmeepgeom/gdsII-3d.cpp ./libmeepgeom/dft-fields.cpp ./libmeepgeom/cyl-ellipsoid.ctl ./libmeepgeom/cyl-ellipsoid-ll.cpp ./libmeepgeom/cyl-ellipsoid-eps-ref.h5 ./libmeepgeom/bend-flux-ll.cpp ./libmeepgeom/array-slice-ll.h5 ./libmeepgeom/array-slice-ll.cpp ./libmeepgeom/absorber-1d-ll.cpp ./libmeepgeom/Makefile.am ./libmeepgeom/GDSIIgeom.cpp ./index.md ./doc ./doc/requirements.txt ./doc/docs ./doc/docs/setup.py ./doc/docs/mdx_math.py ./doc/docs/mathjaxhelper.js ./doc/docs/index.md ./doc/docs/images ./doc/docs/images/waveguide-taper.png ./doc/docs/images/swig_process.png ./doc/docs/images/sphere_epsilon.png ./doc/docs/images/reflectance_angular_spectrum.png ./doc/docs/images/refl_coeff_vs_taper_length.png ./doc/docs/images/pypackage_creation.png ./doc/docs/images/prism_epsilon.png ./doc/docs/images/multilevel_meep_n0_37_spectra.png ./doc/docs/images/meep_salt_comparison_thresh.png ./doc/docs/images/meep_salt_comparison_full.png ./doc/docs/images/klayout_schematic.png ./doc/docs/images/grating_diffraction_spectra.png ./doc/docs/images/grating.png ./doc/docs/images/fused_quartz_reflectance_spectrum.png ./doc/docs/images/directional_coupler_flux.png ./doc/docs/images/coupler3D.png ./doc/docs/images/Yee-te.png ./doc/docs/images/Yee-cube.png ./doc/docs/images/Waveguide_forces.png ./doc/docs/images/Vac.jpg ./doc/docs/images/Tutorial-wvg-straight-ez-000200.00.png ./doc/docs/images/Tutorial-wvg-straight-eps-000000.00.png ./doc/docs/images/Tutorial-wvg-ez.gif ./doc/docs/images/Tutorial-wvg-bent2-ez-000300.00.png ./doc/docs/images/Tutorial-wvg-bent-ez-tslice.png ./doc/docs/images/Tutorial-wvg-bent-eps-000000.00.png ./doc/docs/images/Tut-ring-ez-0.175.gif ./doc/docs/images/Tut-ring-ez-0.147.gif ./doc/docs/images/Tut-ring-ez-0.118.gif ./doc/docs/images/Tut-holey-cavity.png ./doc/docs/images/Tut-bend-flux.png ./doc/docs/images/Surface-force.jpg ./doc/docs/images/Spheres-plane.jpg ./doc/docs/images/Source_radiation_pattern.png ./doc/docs/images/Ring-cyl-ez-0.176.png ./doc/docs/images/Ring-cyl-ez-0.148.png ./doc/docs/images/Ring-cyl-ez-0.118.png ./doc/docs/images/Repulsive.jpg ./doc/docs/images/Python-Tutorial-wvg-straight-ez-000200.00.png ./doc/docs/images/Python-Tutorial-wvg-straight-eps-000000.00.png ./doc/docs/images/Python-Tutorial-wvg-bent-ez-tslice.png ./doc/docs/images/Point-dct.jpg ./doc/docs/images/Near2far_simulation_geometry.png ./doc/docs/images/N2ff_comp_cell.png ./doc/docs/images/Metalcavity_ldos.png ./doc/docs/images/Meep-logo.png ./doc/docs/images/Meep-banner.png ./doc/docs/images/Material-dispersion-epsre.png ./doc/docs/images/Material-dispersion-epsim.png ./doc/docs/images/Material-dispersion-eps.png ./doc/docs/images/Material-dispersion-bands.png ./doc/docs/images/Holey-wvg-kx=0.4-w=0.3175.gif ./doc/docs/images/Holey-wvg-kx=0.4-w=0.1896.gif ./doc/docs/images/Holey-wvg-kx=0.30-w=0.8838.gif ./doc/docs/images/Holey-wvg-kx=0.25-w=0.2506.gif ./doc/docs/images/Holey-wvg-kx=0.10-w=0.4811.gif ./doc/docs/images/Holey-wvg-cavity-hz.gif ./doc/docs/images/Holey-wvg-cavity-hz-slice.png ./doc/docs/images/Holey-wvg-cavity-hz-001401.23.png ./doc/docs/images/Holey-wvg-cavity-eps-000000.00.png ./doc/docs/images/Holey-wvg-cavity-Q.png ./doc/docs/images/Holey-wvg-bands.png ./doc/docs/images/Holey-wvg-bands-eps-000000.00.png ./doc/docs/images/Holey-cavity-trans.png ./doc/docs/images/Field-visualization.jpg ./doc/docs/images/Fabryperot.gif ./doc/docs/images/Extruded-blocks.jpg ./doc/docs/images/Example.jpg ./doc/docs/images/Dblocks-force.jpg ./doc/docs/images/Dblocks-config.jpg ./doc/docs/images/Chunks_YSymmetry.png ./doc/docs/images/Chunks_XYSymmetry.png ./doc/docs/images/Chunks_NP8.png ./doc/docs/images/Chunks_NP1.png ./doc/docs/images/ChunkingAndSymmetry.svg ./doc/docs/images/ChunkStatistics.png ./doc/docs/images/CWsolver-scheme.png ./doc/docs/images/CWsolver-python.png ./doc/docs/images/3rd-harm-1d-vs-chi.png ./doc/docs/images/3rd-harm-1d-flux.png ./doc/docs/Yee_Lattice.md ./doc/docs/Unix_Installation_Basics.wiki ./doc/docs/Units_and_Nonlinearity.md ./doc/docs/The_Run_Function_Is_Not_A_Loop.md ./doc/docs/Synchronizing_the_Magnetic_and_Electric_Fields.md ./doc/docs/Scheme_User_Interface.md ./doc/docs/Scheme_Tutorials ./doc/docs/Scheme_Tutorials/Third_Harmonic_Generation.md ./doc/docs/Scheme_Tutorials/Ring_Resonator_in_Cylindrical_Coordinates.md ./doc/docs/Scheme_Tutorials/Resonant_Modes_and_Transmission_in_a_Waveguide_Cavity.md ./doc/docs/Scheme_Tutorials/Optical_Forces.md ./doc/docs/Scheme_Tutorials/Near_to_Far_Field_Spectra.md ./doc/docs/Scheme_Tutorials/Multilevel_Atomic_Susceptibility.md ./doc/docs/Scheme_Tutorials/Material_Dispersion.md ./doc/docs/Scheme_Tutorials/Local_Density_of_States.md ./doc/docs/Scheme_Tutorials/Frequency_Domain_Solver.md ./doc/docs/Scheme_Tutorials/Casimir_Forces.md ./doc/docs/Scheme_Tutorials/Basics.md ./doc/docs/Replacements.vim ./doc/docs/Python_User_Interface.md ./doc/docs/Python_Tutorials ./doc/docs/Python_Tutorials/Third_Harmonic_Generation.md ./doc/docs/Python_Tutorials/Ring_Resonator_in_Cylindrical_Coordinates.md ./doc/docs/Python_Tutorials/Resonant_Modes_and_Transmission_in_a_Waveguide_Cavity.md ./doc/docs/Python_Tutorials/Optical_Forces.md ./doc/docs/Python_Tutorials/Near_to_Far_Field_Spectra.md ./doc/docs/Python_Tutorials/Multilevel_Atomic_Susceptibility.md ./doc/docs/Python_Tutorials/Mode_Decomposition.md ./doc/docs/Python_Tutorials/Material_Dispersion.md ./doc/docs/Python_Tutorials/Local_Density_of_States.md ./doc/docs/Python_Tutorials/GDSII_Import.md ./doc/docs/Python_Tutorials/Frequency_Domain_Solver.md ./doc/docs/Python_Tutorials/Basics.md ./doc/docs/Perfectly_Matched_Layer.md ./doc/docs/Parallel_Meep.md ./doc/docs/Mode_Decomposition.md ./doc/docs/Materials.md ./doc/docs/License_and_Copyright.md ./doc/docs/Introduction.md ./doc/docs/Installation.md ./doc/docs/Guile_and_Scheme_Information.md ./doc/docs/FixWikiConversion.sh ./doc/docs/Field_Functions.md ./doc/docs/FAQ.md ./doc/docs/Exploiting_Symmetry.md ./doc/docs/Download.md ./doc/docs/Developer_Codes ./doc/docs/Developer_Codes/WriteChunkInfo.cpp ./doc/docs/Developer_Codes/Makefile.manual ./doc/docs/Cylindrical_Coordinates.md ./doc/docs/Chunks_and_Symmetry.md ./doc/docs/C++_Tutorial.md ./doc/docs/C++_Developer_Information.md ./doc/docs/Build_From_Source.md ./doc/docs/Acknowledgements.md ./doc/README ./configure.ac ./codemeta.json ./autogen.sh ./TODO ./README.md ./NEWS.md ./Makefile.am ./LICENSE ./COPYRIGHT ./AUTHORS ./.travis.yml ./.mailmap ./.gitignore echo arm64 arm64 #if [ "arm64" = "armel" ] || \ # [ "arm64" = "mips" ] || \ # [ "arm64" = "mipsel" ] || \ # [ "arm64" = "powerpc" ] || \ # [ "arm64" = "sparc" ] ; then \ # echo "Do not make tests on this architecture" ;\ #else \ # echo "Do make tests on this architecture" ;\ # make check; \ # find; \ # cat python/test-suite.log; \ #fi # check whether testsuite runs everywhere make check; \ cat python/test-suite.log make[2]: Entering directory '/build/meep-1.7.0' Making check in src make[3]: Entering directory '/build/meep-1.7.0/src' make check-am make[4]: Entering directory '/build/meep-1.7.0/src' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/build/meep-1.7.0/src' make[3]: Leaving directory '/build/meep-1.7.0/src' Making check in tests make[3]: Entering directory '/build/meep-1.7.0/tests' make aniso_disp bench bragg_transmission convergence_cyl_waveguide cylindrical flux harmonics integrate known_results near2far one_dimensional physical stress_tensor symmetry three_d two_dimensional 2D_convergence h5test pml make[4]: Entering directory '/build/meep-1.7.0/tests' aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o aniso_disp.o aniso_disp.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o aniso_disp aniso_disp.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/aniso_disp aniso_disp.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bench.o bench.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o bench bench.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/bench bench.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bragg_transmission.o bragg_transmission.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o bragg_transmission bragg_transmission.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/bragg_transmission bragg_transmission.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o convergence_cyl_waveguide.o convergence_cyl_waveguide.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o convergence_cyl_waveguide convergence_cyl_waveguide.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/convergence_cyl_waveguide convergence_cyl_waveguide.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o cylindrical.o cylindrical.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o cylindrical cylindrical.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/cylindrical cylindrical.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o flux.o flux.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o flux flux.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/flux flux.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o harmonics.o harmonics.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o harmonics harmonics.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/harmonics harmonics.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o integrate.o integrate.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o integrate integrate.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/integrate integrate.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o known_results.o known_results.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o known_results known_results.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/known_results known_results.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o near2far.o near2far.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o near2far near2far.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/near2far near2far.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o one_dimensional.o one_dimensional.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o one_dimensional one_dimensional.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/one_dimensional one_dimensional.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o physical.o physical.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o physical physical.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/physical physical.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o stress_tensor.o stress_tensor.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o stress_tensor stress_tensor.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/stress_tensor stress_tensor.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o symmetry.o symmetry.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o symmetry symmetry.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/symmetry symmetry.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o three_d.o three_d.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o three_d three_d.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/three_d three_d.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o two_dimensional.o two_dimensional.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o two_dimensional two_dimensional.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/two_dimensional two_dimensional.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o 2D_convergence.o 2D_convergence.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o 2D_convergence 2D_convergence.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/2D_convergence 2D_convergence.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o h5test.o h5test.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o h5test h5test.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/h5test h5test.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o pml.o pml.cpp pml.cpp: In function 'int check_pmlcyl(double (*)(const meep::vec&))': pml.cpp:220:10: warning: variable 'prev_refl_const' set but not used [-Wunused-but-set-variable] double prev_refl_const = 0.0, refl_const = 0.0; ^~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o pml pml.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/pml pml.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm make[4]: Leaving directory '/build/meep-1.7.0/tests' make check-TESTS make[4]: Entering directory '/build/meep-1.7.0/tests' make[5]: Entering directory '/build/meep-1.7.0/tests' PASS: aniso_disp PASS: bench PASS: bragg_transmission PASS: convergence_cyl_waveguide PASS: cylindrical PASS: flux PASS: harmonics PASS: integrate PASS: known_results PASS: near2far PASS: one_dimensional PASS: physical PASS: stress_tensor PASS: symmetry PASS: three_d PASS: two_dimensional PASS: 2D_convergence PASS: h5test PASS: pml ============================================================================ Testsuite summary for meep 1.7.0 ============================================================================ # TOTAL: 19 # PASS: 19 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[5]: Leaving directory '/build/meep-1.7.0/tests' make[4]: Leaving directory '/build/meep-1.7.0/tests' make[3]: Leaving directory '/build/meep-1.7.0/tests' Making check in scheme make[3]: Entering directory '/build/meep-1.7.0/scheme' make check-am make[4]: Entering directory '/build/meep-1.7.0/scheme' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/build/meep-1.7.0/scheme' make[3]: Leaving directory '/build/meep-1.7.0/scheme' Making check in libmeepgeom make[3]: Entering directory '/build/meep-1.7.0/libmeepgeom' make pw-source-ll ring-ll cyl-ellipsoid-ll absorber-1d-ll array-slice-ll user-defined-material dft-fields gdsII-3d make[4]: Entering directory '/build/meep-1.7.0/libmeepgeom' aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o pw-source-ll.o pw-source-ll.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o pw-source-ll pw-source-ll.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/pw-source-ll pw-source-ll.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o ring-ll.o ring-ll.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o ring-ll ring-ll.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/ring-ll ring-ll.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o cyl-ellipsoid-ll.o cyl-ellipsoid-ll.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o cyl-ellipsoid-ll cyl-ellipsoid-ll.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/cyl-ellipsoid-ll cyl-ellipsoid-ll.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o absorber-1d-ll.o absorber-1d-ll.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o absorber-1d-ll absorber-1d-ll.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/absorber-1d-ll absorber-1d-ll.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o array-slice-ll.o array-slice-ll.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o array-slice-ll array-slice-ll.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/array-slice-ll array-slice-ll.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o user-defined-material.o user-defined-material.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o user-defined-material user-defined-material.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/user-defined-material user-defined-material.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o dft-fields.o dft-fields.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o dft-fields dft-fields.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/dft-fields dft-fields.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o gdsII-3d.o gdsII-3d.cpp /bin/sh ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o gdsII-3d gdsII-3d.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm libtool: link: aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o .libs/gdsII-3d gdsII-3d.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm make[4]: Leaving directory '/build/meep-1.7.0/libmeepgeom' make check-TESTS make[4]: Entering directory '/build/meep-1.7.0/libmeepgeom' make[5]: Entering directory '/build/meep-1.7.0/libmeepgeom' PASS: cyl-ellipsoid-ll PASS: array-slice-ll ============================================================================ Testsuite summary for meep 1.7.0 ============================================================================ # TOTAL: 2 # PASS: 2 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[5]: Leaving directory '/build/meep-1.7.0/libmeepgeom' make[4]: Leaving directory '/build/meep-1.7.0/libmeepgeom' make[3]: Leaving directory '/build/meep-1.7.0/libmeepgeom' Making check in libpympb make[3]: Entering directory '/build/meep-1.7.0/libpympb' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/meep-1.7.0/libpympb' Making check in python make[3]: Entering directory '/build/meep-1.7.0/python' /bin/sh: git: command not found cp meep.py __init__.py echo "__version__ = ''" >> __init__.py if [[ "3.0.12" = 3.0.12 ]]; then \ sed -i.bak '/^if _swig_python_version_info >= (2, 7, 0):/,/^else:/d' __init__.py; \ sed -i.bak 's/ import _meep/from . import _meep/' __init__.py; \ fi if [[ "3.0.12" == 3.0.12 ]]; then \ sed -i.bak '/^if _swig_python_version_info >= (2, 7, 0):/,/^else:/d' mpb.py; \ sed -i.bak 's/ import _mpb/from . import _mpb/' mpb.py; \ fi make check-am make[4]: Entering directory '/build/meep-1.7.0/python' /bin/sh: git: command not found cp meep.py __init__.py echo "__version__ = ''" >> __init__.py if [[ "3.0.12" = 3.0.12 ]]; then \ sed -i.bak '/^if _swig_python_version_info >= (2, 7, 0):/,/^else:/d' __init__.py; \ sed -i.bak 's/ import _meep/from . import _meep/' __init__.py; \ fi if [[ "3.0.12" == 3.0.12 ]]; then \ sed -i.bak '/^if _swig_python_version_info >= (2, 7, 0):/,/^else:/d' mpb.py; \ sed -i.bak 's/ import _mpb/from . import _mpb/' mpb.py; \ fi mkdir -p meep cp __init__.py ./geom.py ./simulation.py ./source.py ./materials.py .libs/_meep.so meep mkdir -p meep/mpb cp .libs/_mpb.so meep/mpb cp ./mpb.py meep/mpb/__init__.py cp ./solver.py ./mpb_data.py meep/mpb make check-TESTS make[5]: Entering directory '/build/meep-1.7.0/python' make[6]: Entering directory '/build/meep-1.7.0/python' PASS: tests/3rd_harm_1d.py PASS: tests/absorber_1d.py PASS: tests/antenna_radiation.py PASS: tests/bend_flux.py PASS: tests/binary_grating.py PASS: tests/cavity_arrayslice.py PASS: tests/chunks.py PASS: tests/cyl_ellipsoid.py PASS: tests/dft_fields.py PASS: tests/field_functions.py PASS: tests/force.py PASS: tests/fragment_stats.py PASS: tests/geom.py PASS: tests/holey_wvg_bands.py PASS: tests/holey_wvg_cavity.py PASS: tests/kdom.py PASS: tests/ldos.py PASS: tests/material_dispersion.py FAIL: tests/mpb.py PASS: tests/mode_coeffs.py PASS: tests/mode_decomposition.py FAIL: tests/multilevel_atom.py PASS: tests/physical.py PASS: tests/pw_source.py PASS: tests/refl_angular.py PASS: tests/ring.py PASS: tests/ring_cyl.py PASS: tests/simulation.py PASS: tests/source.py PASS: tests/user_defined_material.py PASS: tests/wvg_src.py ============================================================================ Testsuite summary for meep 1.7.0 ============================================================================ # TOTAL: 31 # PASS: 29 # SKIP: 0 # XFAIL: 0 # FAIL: 2 # XPASS: 0 # ERROR: 0 ============================================================================ See python/test-suite.log Please report to meep@ab-initio.mit.edu ============================================================================ make[6]: *** [Makefile:967: test-suite.log] Error 1 make[6]: Leaving directory '/build/meep-1.7.0/python' make[5]: *** [Makefile:1075: check-TESTS] Error 2 make[5]: Leaving directory '/build/meep-1.7.0/python' make[4]: *** [Makefile:1141: check-am] Error 2 make[4]: Leaving directory '/build/meep-1.7.0/python' make[3]: *** [Makefile:1143: check] Error 2 make[3]: Leaving directory '/build/meep-1.7.0/python' make[2]: *** [Makefile:508: check-recursive] Error 1 make[2]: Leaving directory '/build/meep-1.7.0' ======================================= meep 1.7.0: python/test-suite.log ======================================= # TOTAL: 31 # PASS: 29 # SKIP: 0 # XFAIL: 0 # FAIL: 2 # XPASS: 0 # ERROR: 0 .. contents:: :depth: 2 FAIL: tests/mpb =============== test_anisotropic_2d_gap ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.3, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: . Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.006756067276 solve_kpoint (0,0,0): freqs:, k index, k1, k2, k3, kmag/2pi, band 1, band 2, band 3, band 4, band 5, band 6, band 7, band 8 Solving for bands 3 to 8... Finished solving for bands 3 to 8 after 52 iterations. freqs:, 1, 0, 0, 0, 0, 0, 0, 0.318992, 0.365115, 0.370143, 0.370147, 0.401833, 0.401833 elapsed time for k point: 0.392955064774 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 45 iterations. freqs:, 2, 0.1, 0, 0, 0.1, 0.0367937, 0.049071, 0.308902, 0.358341, 0.370542, 0.38729, 0.392077, 0.402396 elapsed time for k point: 0.511879205704 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 44 iterations. freqs:, 3, 0.2, 0, 0, 0.2, 0.0730357, 0.0965491, 0.285819, 0.360073, 0.368932, 0.371597, 0.403894, 0.408164 elapsed time for k point: 0.498996019363 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 48 iterations. freqs:, 4, 0.3, 0, 0, 0.3, 0.107851, 0.140336, 0.25846, 0.340653, 0.367325, 0.372946, 0.405794, 0.418837 elapsed time for k point: 0.540746927261 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 39 iterations. freqs:, 5, 0.4, 0, 0, 0.4, 0.1388, 0.176103, 0.23164, 0.313843, 0.374076, 0.377706, 0.407374, 0.410603 elapsed time for k point: 0.444333076477 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 36 iterations. freqs:, 6, 0.5, 0, 0, 0.5, 0.154816, 0.192048, 0.216968, 0.300856, 0.374518, 0.385777, 0.401594, 0.407988 elapsed time for k point: 0.420989990234 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 38 iterations. freqs:, 7, 0.5, 0.1, 0, 0.509902, 0.15975, 0.195136, 0.218441, 0.305033, 0.358789, 0.391555, 0.402172, 0.402445 elapsed time for k point: 0.439936876297 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 37 iterations. freqs:, 8, 0.5, 0.2, 0, 0.538516, 0.173344, 0.203625, 0.222584, 0.316302, 0.340088, 0.36862, 0.387671, 0.424089 elapsed time for k point: 0.427512168884 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 38 iterations. freqs:, 9, 0.5, 0.3, 0, 0.583095, 0.192437, 0.215224, 0.228468, 0.323728, 0.33113, 0.341965, 0.37019, 0.4458 elapsed time for k point: 0.440370798111 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 42 iterations. freqs:, 10, 0.5, 0.4, 0, 0.640312, 0.21184, 0.226, 0.234179, 0.311757, 0.318108, 0.344193, 0.3555, 0.465942 elapsed time for k point: 0.472941160202 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 53 iterations. freqs:, 11, 0.5, 0.5, 0, 0.707107, 0.221357, 0.230619, 0.236708, 0.307149, 0.30715, 0.349538, 0.349539, 0.477307 elapsed time for k point: 0.598701000214 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 44 iterations. freqs:, 12, 0.4, 0.4, 0, 0.565685, 0.19918, 0.2202, 0.239097, 0.309959, 0.330944, 0.347653, 0.354078, 0.460272 elapsed time for k point: 0.500679969788 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. freqs:, 13, 0.3, 0.3, 0, 0.424264, 0.153826, 0.186625, 0.253882, 0.318156, 0.351842, 0.366269, 0.371004, 0.436281 elapsed time for k point: 0.397899866104 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 41 iterations. freqs:, 14, 0.2, 0.2, 0, 0.282843, 0.103673, 0.133382, 0.276682, 0.331086, 0.368234, 0.382194, 0.398022, 0.412434 elapsed time for k point: 0.476099967957 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 38 iterations. freqs:, 15, 0.1, 0.1, 0, 0.141421, 0.0520822, 0.0690311, 0.302853, 0.347811, 0.385316, 0.389474, 0.390006, 0.396139 elapsed time for k point: 0.436270952225 solve_kpoint (0,0,0): Solving for bands 3 to 8... Finished solving for bands 3 to 8 after 40 iterations. freqs:, 16, 0, 0, 0, 0, 0, 0, 0.318992, 0.365115, 0.370143, 0.370147, 0.401833, 0.401833 .elapsed time for k point: 0.30154800415 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.2213570228 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.230619158264 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.216967769545 at Vector3<0.5, 0.0, 0.0> to 0.318992476569 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.300856483084 at Vector3<0.5, 0.0, 0.0> to 0.365115253765 at Vector3<0.0, 0.0, 0.0> Band 5 range: 0.307149834004 at Vector3<0.5, 0.5, 0.0> to 0.385316361771 at Vector3<0.1, 0.1, 0.0> Band 6 range: 0.341964725508 at Vector3<0.5, 0.3, 0.0> to 0.391554684426 at Vector3<0.5, 0.1, 0.0> Band 7 range: 0.349538537661 at Vector3<0.5, 0.5, 0.0> to 0.407373600123 at Vector3<0.4, 0.0, 0.0> Band 8 range: 0.39613882331 at Vector3<0.1, 0.1, 0.0> to 0.477306572259 at Vector3<0.5, 0.5, 0.0> total elapsed time for run: 7.31261014938 done test_anisotropic_2d_gap: 7.32s test_bragg ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 1 dimensions. Grid size is 32 x 1 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 1e+20, height 0.25, axis (1, 0, 0) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 1 k-points Vector3<0.5, 0.0, 0.0> elapsed time for initialization: 0.00102400779724 solve_kpoint (0.5,0,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1, tm band 2, tm band 3, tm band 4, tm band 5, tm band 6, tm band 7, tm band 8 Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 1, 0.5, 0, 0, 0.5, 0.222451, 0.443471, 0.892368, 1.10456, 1.56579, 1.75949, 2.24248, 2.40631 elapsed time for k point: 0.00636005401611 total elapsed time for run: 0.00765204429626 done Fixing h-field (band 8) phase by 0.909548 + -0.415598i; max ampl. = 1.96664 .Outputting fields to test_bragg-h.k01.b08.y.tm.h5... test_bragg: 0.03s test_bragg_sine ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 1 dimensions. Grid size is 32 x 1 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: Geometric object tree has depth 1 and 0 object nodes (vs. 0 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 11 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.05, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.15, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.25, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.35, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.45, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> elapsed time for initialization: 0.00409412384033 solve_kpoint (0,0,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1, tm band 2, tm band 3, tm band 4, tm band 5, tm band 6, tm band 7, tm band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 35 iterations. tmfreqs:, 1, 0, 0, 0, 0, 0, 0.468775, 0.546626, 0.989349, 1.02405, 1.49704, 1.51158, 1.99991 elapsed time for k point: 0.00989603996277 solve_kpoint (0.05,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 83 iterations. tmfreqs:, 2, 0.05, 0, 0, 0.05, 0.0235585, 0.461962, 0.553534, 0.976586, 1.03685, 1.4784, 1.53022, 1.97778 elapsed time for k point: 0.0285031795502 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 10 iterations. tmfreqs:, 3, 0.1, 0, 0, 0.1, 0.047044, 0.445964, 0.569827, 0.954549, 1.059, 1.45407, 1.55459, 1.95293 elapsed time for k point: 0.00551605224609 solve_kpoint (0.15,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 10 iterations. tmfreqs:, 4, 0.15, 0, 0, 0.15, 0.0703703, 0.426194, 0.590125, 0.931007, 1.08275, 1.42941, 1.5793, 1.92803 elapsed time for k point: 0.00456190109253 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 9 iterations. tmfreqs:, 5, 0.2, 0, 0, 0.2, 0.0934195, 0.40505, 0.612091, 0.907101, 1.10696, 1.40468, 1.6041, 1.90311 elapsed time for k point: 0.00420999526978 solve_kpoint (0.25,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 9 iterations. tmfreqs:, 6, 0.25, 0, 0, 0.25, 0.11601, 0.383577, 0.634793, 0.883153, 1.13136, 1.37995, 1.62894, 1.8782 elapsed time for k point: 0.00376892089844 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 9 iterations. tmfreqs:, 7, 0.3, 0, 0, 0.3, 0.137834, 0.362445, 0.657758, 0.859352, 1.15583, 1.35526, 1.65379, 1.8533 elapsed time for k point: 0.00335192680359 solve_kpoint (0.35,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 9 iterations. tmfreqs:, 8, 0.35, 0, 0, 0.35, 0.15832, 0.342396, 0.6806, 0.835947, 1.18029, 1.33065, 1.67864, 1.82841 elapsed time for k point: 0.00371193885803 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 8 iterations. tmfreqs:, 9, 0.4, 0, 0, 0.4, 0.176334, 0.324651, 0.702682, 0.813501, 1.20459, 1.30625, 1.70347, 1.80356 elapsed time for k point: 0.00402212142944 solve_kpoint (0.45,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 8 iterations. tmfreqs:, 10, 0.45, 0, 0, 0.45, 0.189641, 0.31149, 0.722112, 0.793866, 1.22816, 1.28262, 1.72816, 1.77885 elapsed time for k point: 0.00344896316528 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 8 iterations. tmfreqs:, 11, 0.5, 0, 0, 0.5, 0.194775, 0.306403, 0.73165, 0.784262, 1.2441, 1.26666, 1.74884, 1.75817 .elapsed time for k point: 0.00423789024353 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.194774663668 at Vector3<0.5, 0.0, 0.0> Band 2 range: 0.306403026231 at Vector3<0.5, 0.0, 0.0> to 0.468774852587 at Vector3<0.0, 0.0, 0.0> Band 3 range: 0.546625750132 at Vector3<0.0, 0.0, 0.0> to 0.731650442654 at Vector3<0.5, 0.0, 0.0> Band 4 range: 0.784261590509 at Vector3<0.5, 0.0, 0.0> to 0.989348615544 at Vector3<0.0, 0.0, 0.0> Band 5 range: 1.02405486481 at Vector3<0.0, 0.0, 0.0> to 1.2440980042 at Vector3<0.5, 0.0, 0.0> Band 6 range: 1.26665668619 at Vector3<0.5, 0.0, 0.0> to 1.4970379697 at Vector3<0.0, 0.0, 0.0> Band 7 range: 1.51158009946 at Vector3<0.0, 0.0, 0.0> to 1.74883590399 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.75816832085 at Vector3<0.5, 0.0, 0.0> to 1.99990720072 at Vector3<0.0, 0.0, 0.0> Gap from band 1 (0.194774663668) to band 2 (0.306403026231), 44.5464212843% Gap from band 2 (0.468774852587) to band 3 (0.546625750132), 15.3340262625% Gap from band 3 (0.731650442654) to band 4 (0.784261590509), 6.94118744416% Gap from band 4 (0.989348615544) to band 5 (1.02405486481), 3.44752054018% Gap from band 5 (1.2440980042) to band 6 (1.26665668619), 1.79696424101% Gap from band 6 (1.4970379697) to band 7 (1.51158009946), 0.966698293627% Gap from band 7 (1.74883590399) to band 8 (1.75816832085), 0.532215889061% total elapsed time for run: 0.0816130638123 done test_bragg_sine: 0.08s test_compute_field_energy ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00627708435059 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.473442077637 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.37665200233 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.305072784424 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.282269001007 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.329451084137 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.468374967575 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.388950824738 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.330832958221 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.280550956726 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.27127790451 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.265420913696 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.215181112289 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.251576900482 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.353358983994 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.405286073685 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.857120037079 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 6.86500811577 done D-energy-components:, 16, 8, 0.499991, 0.500009, 0 .test_compute_field_energy: 6.87s test_compute_group_velocity ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00638699531555 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.481505155563 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.38597011566 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.312129974365 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.287500858307 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.333759069443 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.470114946365 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.39005112648 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.333345890045 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.287729978561 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.275704145432 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.273426055908 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.214257955551 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.250367879868 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.34077000618 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.395924091339 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 .elapsed time for k point: 0.846448898315 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 6.88982105255 done test_compute_group_velocity: 6.90s test_compute_integrals ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00634598731995 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.478770971298 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.42627906799 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.321581840515 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.289764881134 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.332028865814 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.465008974075 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.390480995178 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.332737922668 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.281366109848 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.271283864975 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.267405986786 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.210989952087 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.246253967285 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.339574098587 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.400045156479 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.832607984543 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 6.89666604996 done Fixing h-field (band 8) phase by 1 + -2.58685e-07i; max ampl. = 4.48388 H-energy-components:, 16, 8, 0, 0, 1 Fixing e-field (band 8) phase by 6.12323e-17 + -1i; max ampl. = 1.10099 .test_compute_integrals: 6.92s test_diamond ======================== Initializing eigensolver data Computing 5 bands with 1e-12 tolerance Working in 3 dimensions. Grid size is 16 x 16 x 16. Solving for 5 bands at a time. Creating Maxwell data... Mesh size is 5. Lattice vectors: (0, 0.5, 0.5) (0.5, 0, 0.5) (0.5, 0.5, 0) Cell volume = 0.25 Reciprocal lattice vectors (/ 2 pi): (-1, 1, 1) (1, -1, 1) (1, 1, -1) Geometric objects: sphere, center = (0.125,0.125,0.125) radius 0.25 sphere, center = (-0.125,-0.125,-0.125) radius 0.25 Geometric object tree has depth 4 and 35 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: . Initializing fields to random numbers... 31 k-points Vector3<0.0, 0.5, 0.5> Vector3<0.0, 0.525, 0.475> Vector3<0.0, 0.55, 0.45> Vector3<0.0, 0.575, 0.425> Vector3<0.0, 0.6, 0.4> Vector3<0.0, 0.625, 0.375> Vector3<0.0, 0.6, 0.3> Vector3<0.0, 0.575, 0.225> Vector3<0.0, 0.55, 0.15> Vector3<0.0, 0.525, 0.075> Vector3<0.0, 0.5, 0.0> Vector3<0.0, 0.4, 0.0> Vector3<0.0, 0.3, 0.0> Vector3<0.0, 0.2, 0.0> Vector3<0.0, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> Vector3<0.0, 0.1, 0.1> Vector3<0.0, 0.2, 0.2> Vector3<0.0, 0.3, 0.3> Vector3<0.0, 0.4, 0.4> Vector3<0.0, 0.5, 0.5> Vector3<0.05, 0.55, 0.5> Vector3<0.1, 0.6, 0.5> Vector3<0.15, 0.65, 0.5> Vector3<0.2, 0.7, 0.5> Vector3<0.25, 0.75, 0.5> Vector3<0.275, 0.75, 0.475> Vector3<0.3, 0.75, 0.45> Vector3<0.325, 0.75, 0.425> Vector3<0.35, 0.75, 0.4> Vector3<0.375, 0.75, 0.375> elapsed time for initialization: 0.070748090744 solve_kpoint (0,0.5,0.5): freqs:, k index, k1, k2, k3, kmag/2pi, band 1, band 2, band 3, band 4, band 5 Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 54 iterations. freqs:, 1, 0, 0.5, 0.5, 1, 0.38015, 0.381243, 0.495263, 0.496788, 0.541208 elapsed time for k point: 1.62628817558 solve_kpoint (0,0.525,0.475): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 34 iterations. freqs:, 2, 0, 0.525, 0.475, 1.0025, 0.380386, 0.382168, 0.495624, 0.497176, 0.537208 elapsed time for k point: 1.0488319397 solve_kpoint (0,0.55,0.45): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 30 iterations. freqs:, 3, 0, 0.55, 0.45, 1.00995, 0.380966, 0.38483, 0.496711, 0.498342, 0.526501 elapsed time for k point: 0.923314094543 solve_kpoint (0,0.575,0.425): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 29 iterations. freqs:, 4, 0, 0.575, 0.425, 1.02225, 0.381461, 0.388864, 0.498536, 0.500287, 0.511601 elapsed time for k point: 0.906193971634 solve_kpoint (0,0.6,0.4): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 28 iterations. freqs:, 5, 0, 0.6, 0.4, 1.03923, 0.381077, 0.393446, 0.49495, 0.501109, 0.503014 elapsed time for k point: 0.869415044785 solve_kpoint (0,0.625,0.375): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 45 iterations. freqs:, 6, 0, 0.625, 0.375, 1.06066, 0.378621, 0.396729, 0.479263, 0.504432, 0.506514 elapsed time for k point: 1.37766289711 Fixing d-field (band 1) phase by 0.997721 + 0.0674729i; max ampl. = 12.9762 D-energy-components:, 6, 1, 0.0477669, 0.476092, 0.476141 Outputting test_diamond-dpwr.k06.b01.h5... D-energy-components:, 6, 1, 0.0477669, 0.476092, 0.476141 Fixing d-field (band 2) phase by 0.997721 + 0.0674729i; max ampl. = 12.1515 D-energy-components:, 6, 2, 0.232067, 0.383937, 0.383996 Outputting test_diamond-dpwr.k06.b02.h5... D-energy-components:, 6, 2, 0.232067, 0.383937, 0.383996 Fixing d-field (band 3) phase by -0.0674729 + 0.997721i; max ampl. = 13.3616 D-energy-components:, 6, 3, 0.736337, 0.13197, 0.131693 Outputting test_diamond-dpwr.k06.b03.h5... D-energy-components:, 6, 3, 0.736337, 0.13197, 0.131693 Fixing d-field (band 4) phase by 0.997721 + 0.0674729i; max ampl. = 7.97914 D-energy-components:, 6, 4, 0.11714, 0.441055, 0.441805 Outputting test_diamond-dpwr.k06.b04.h5... D-energy-components:, 6, 4, 0.11714, 0.441055, 0.441805 Fixing d-field (band 5) phase by 0.997721 + 0.0674729i; max ampl. = 12.8979 D-energy-components:, 6, 5, 0.238579, 0.435374, 0.326046 Outputting test_diamond-dpwr.k06.b05.h5... D-energy-components:, 6, 5, 0.238579, 0.435374, 0.326046 solve_kpoint (0,0.6,0.3): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 44 iterations. freqs:, 7, 0, 0.6, 0.3, 0.994987, 0.369582, 0.388559, 0.467091, 0.487657, 0.518291 elapsed time for k point: 1.34242987633 solve_kpoint (0,0.575,0.225): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 98 iterations. freqs:, 8, 0, 0.575, 0.225, 0.940744, 0.356415, 0.3702, 0.457212, 0.470085, 0.538723 elapsed time for k point: 3.01060795784 solve_kpoint (0,0.55,0.15): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 28 iterations. freqs:, 9, 0, 0.55, 0.15, 0.9, 0.344555, 0.351994, 0.449598, 0.455588, 0.552575 elapsed time for k point: 0.848773002625 solve_kpoint (0,0.525,0.075): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 27 iterations. freqs:, 10, 0, 0.525, 0.075, 0.874643, 0.336533, 0.339294, 0.444662, 0.446211, 0.562057 elapsed time for k point: 0.806896924973 solve_kpoint (0,0.5,0): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 25 iterations. freqs:, 11, 0, 0.5, 0, 0.866025, 0.333545, 0.334937, 0.442371, 0.443555, 0.565558 elapsed time for k point: 0.782748937607 solve_kpoint (0,0.4,0): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 23 iterations. freqs:, 12, 0, 0.4, 0, 0.69282, 0.299948, 0.301256, 0.47018, 0.471285, 0.567351 elapsed time for k point: 0.724020957947 solve_kpoint (0,0.3,0): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 24 iterations. freqs:, 13, 0, 0.3, 0, 0.519615, 0.235132, 0.236238, 0.517406, 0.518221, 0.572633 elapsed time for k point: 0.722883939743 solve_kpoint (0,0.2,0): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 29 iterations. freqs:, 14, 0, 0.2, 0, 0.34641, 0.160616, 0.161417, 0.560554, 0.560855, 0.580923 elapsed time for k point: 0.873769044876 solve_kpoint (0,0.1,0): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 39 iterations. freqs:, 15, 0, 0.1, 0, 0.173205, 0.0813864, 0.0818061, 0.587706, 0.587881, 0.59052 elapsed time for k point: 1.20013403893 solve_kpoint (0,0,0): Solving for bands 3 to 5... Finished solving for bands 3 to 5 after 30 iterations. freqs:, 16, 0, 0, 0, 0, 0, 0, 0.59559, 0.595819, 0.595839 elapsed time for k point: 0.431259155273 solve_kpoint (0,0.1,0.1): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 29 iterations. freqs:, 17, 0, 0.1, 0.1, 0.2, 0.09409, 0.0944497, 0.585515, 0.585945, 0.591581 elapsed time for k point: 0.902096986771 solve_kpoint (0,0.2,0.2): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 32 iterations. freqs:, 18, 0, 0.2, 0.2, 0.4, 0.185559, 0.18625, 0.566601, 0.567223, 0.582064 elapsed time for k point: 0.973471879959 solve_kpoint (0,0.3,0.3): Solving for bands 1 to 5... iteration 132: trace = 1.069360396646253 (0.000149825% change) Finished solving for bands 1 to 5 after 195 iterations. freqs:, 19, 0, 0.3, 0.3, 0.6, 0.271029, 0.271988, 0.546939, 0.547286, 0.567915 elapsed time for k point: 5.92188405991 solve_kpoint (0,0.4,0.4): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 111 iterations. freqs:, 20, 0, 0.4, 0.4, 0.8, 0.343862, 0.344966, 0.517995, 0.519047, 0.546786 elapsed time for k point: 3.4500439167 solve_kpoint (0,0.5,0.5): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 38 iterations. freqs:, 21, 0, 0.5, 0.5, 1, 0.38015, 0.381243, 0.495263, 0.496788, 0.541208 elapsed time for k point: 1.1630730629 solve_kpoint (0.05,0.55,0.5): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 54 iterations. freqs:, 22, 0.05, 0.55, 0.5, 1.00499, 0.381309, 0.382411, 0.495948, 0.497425, 0.535972 elapsed time for k point: 1.66495895386 solve_kpoint (0.1,0.6,0.5): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 41 iterations. freqs:, 23, 0.1, 0.6, 0.5, 1.0198, 0.384516, 0.385642, 0.497116, 0.498376, 0.526207 elapsed time for k point: 1.28974199295 solve_kpoint (0.15,0.65,0.5): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 43 iterations. freqs:, 24, 0.15, 0.65, 0.5, 1.04403, 0.388899, 0.39006, 0.495493, 0.496211, 0.520859 elapsed time for k point: 1.3331720829 solve_kpoint (0.2,0.7,0.5): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 42 iterations. freqs:, 25, 0.2, 0.7, 0.5, 1.07703, 0.392891, 0.394091, 0.490499, 0.490808, 0.523019 elapsed time for k point: 1.99233794212 solve_kpoint (0.25,0.75,0.5): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 73 iterations. freqs:, 26, 0.25, 0.75, 0.5, 1.11803, 0.394551, 0.395772, 0.487945, 0.488132, 0.526056 elapsed time for k point: 2.23296308517 solve_kpoint (0.275,0.75,0.475): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 41 iterations. freqs:, 27, 0.275, 0.75, 0.475, 1.09772, 0.391745, 0.39651, 0.484446, 0.491809, 0.5199 elapsed time for k point: 1.25087118149 solve_kpoint (0.3,0.75,0.45): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 30 iterations. freqs:, 28, 0.3, 0.75, 0.45, 1.08167, 0.387217, 0.396766, 0.481876, 0.494898, 0.514052 elapsed time for k point: 0.918909072876 solve_kpoint (0.325,0.75,0.425): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 33 iterations. freqs:, 29, 0.325, 0.75, 0.425, 1.07005, 0.383285, 0.396393, 0.480245, 0.4979, 0.509391 elapsed time for k point: 1.01679086685 solve_kpoint (0.35,0.75,0.4): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 39 iterations. freqs:, 30, 0.35, 0.75, 0.4, 1.06301, 0.380687, 0.395955, 0.479389, 0.501411, 0.506376 elapsed time for k point: 1.19527602196 solve_kpoint (0.375,0.75,0.375): Solving for bands 1 to 5... Finished solving for bands 1 to 5 after 54 iterations. freqs:, 31, 0.375, 0.75, 0.375, 1.06066, 0.379784, 0.395774, 0.479133, 0.505118, 0.505264 .elapsed time for k point: 1.66974592209 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.394551078959 at Vector3<0.25, 0.75, 0.5> Band 2 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.396765801408 at Vector3<0.3, 0.75, 0.45> Band 3 range: 0.442370766817 at Vector3<0.0, 0.5, 0.0> to 0.595589963025 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.443555165122 at Vector3<0.0, 0.5, 0.0> to 0.59581913129 at Vector3<0.0, 0.0, 0.0> Band 5 range: 0.503013589515 at Vector3<0.0, 0.6, 0.4> to 0.595838685693 at Vector3<0.0, 0.0, 0.0> Gap from band 2 (0.396765801408) to band 3 (0.442370766817), 10.8694977996% total elapsed time for run: 44.5936570168 done test_diamond: 44.66s test_epsilon_input_file ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: Geometric object tree has depth 1 and 0 object nodes (vs. 0 actual objects) read in 32x32x1 epsilon-input-file "/build/meep-1.7.0/python/tests/data/eps_input_file_test.h5" Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00853204727173 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 61 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.554399, 0.761333, 0.761334, 0.894089, 0.998343, 0.998344, 1.07475 elapsed time for k point: 0.554805040359 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 22 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0879993, 0.552518, 0.748716, 0.762869, 0.888847, 0.992942, 0.998586, 1.07516 elapsed time for k point: 0.261356115341 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 19 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.175173, 0.545105, 0.716013, 0.766968, 0.874229, 0.997272, 0.999271, 1.07644 elapsed time for k point: 0.227829933167 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.260381, 0.525802, 0.677399, 0.772205, 0.858581, 1.00023, 1.01596, 1.07856 elapsed time for k point: 0.250303983688 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.341313, 0.485827, 0.650379, 0.776592, 0.84814, 1.00112, 1.04085, 1.08101 elapsed time for k point: 0.282413005829 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.399713, 0.44029, 0.641795, 0.778307, 0.844568, 1.00149, 1.05803, 1.08222 elapsed time for k point: 0.388432025909 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 25 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.410728, 0.444341, 0.636537, 0.78389, 0.839813, 0.968201, 1.03809, 1.08391 elapsed time for k point: 0.295053005219 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 22 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.441866, 0.455742, 0.622718, 0.799069, 0.81865, 0.919493, 0.999313, 1.08532 elapsed time for k point: 0.254122018814 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 17 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.472164, 0.488272, 0.604358, 0.769828, 0.821208, 0.893668, 0.95752, 1.08635 elapsed time for k point: 0.197883844376 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 16 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.488979, 0.542408, 0.586566, 0.707953, 0.84869, 0.885188, 0.917534, 1.08708 elapsed time for k point: 0.187247037888 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 16 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.497098, 0.578181, 0.578182, 0.668913, 0.878731, 0.883217, 0.88322, 1.08735 elapsed time for k point: 0.18666601181 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 16 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.466856, 0.53849, 0.591576, 0.732347, 0.837964, 0.88299, 0.936299, 1.08665 elapsed time for k point: 0.187196016312 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 20 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.365915, 0.534301, 0.628951, 0.8052, 0.817085, 0.882667, 1.0025, 1.08247 elapsed time for k point: 0.233207941055 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 25 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.247333, 0.542781, 0.682198, 0.781369, 0.883491, 0.892769, 1.05714, 1.06602 elapsed time for k point: 0.292963981628 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 27 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.124412, 0.55106, 0.736012, 0.76647, 0.888039, 0.959199, 1.0268, 1.07311 elapsed time for k point: 0.313558101654 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 36 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.554399, 0.761333, 0.761334, 0.894089, 0.998343, 0.998344, 1.07475 ..elapsed time for k point: 0.324563980103 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.497097784377 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.440289641051 at Vector3<0.5, 0.0, 0.0> to 0.578181285681 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.578181508201 at Vector3<0.5, 0.5, 0.0> to 0.761332777526 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.668912642436 at Vector3<0.5, 0.5, 0.0> to 0.80519998397 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.817084745355 at Vector3<0.3, 0.3, 0.0> to 0.894089391592 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.882667116499 at Vector3<0.3, 0.3, 0.0> to 1.00149263282 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.883219914368 at Vector3<0.5, 0.5, 0.0> to 1.05803098325 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.06602335979 at Vector3<0.2, 0.2, 0.0> to 1.08734582956 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.578181285681) to band 3 (0.578181508201), 3.84861035941e-05% Gap from band 4 (0.80519998397) to band 5 (0.817084745355), 1.46518809801% Gap from band 7 (1.05803098325) to band 8 (1.06602335979), 0.752558574758% total elapsed time for run: 4.4500977993 done test_epsilon_input_file: 4.45s test_first_brillouin_zone ======================== test_first_brillouin_zone: 0.69s test_fractional_lattice ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 4 x 4 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (0.1, 0, 0) (0, 0.1, 0) (0, 0, 1) Cell volume = 0.01 Reciprocal lattice vectors (/ 2 pi): (10, -0, 0) (-0, 10, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 9 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00117897987366 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 9 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 2.88675, 2.88675, 2.88675, 2.88675, 4.08248, 4.08248, 4.08248 elapsed time for k point: 0.00418400764465 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 2 iterations. tefreqs:, 2, 0.1, 0, 0, 1, 0.288675, 2.59808, 2.90115, 2.90115, 3.17543, 3.88373, 3.88373, 4.29146 elapsed time for k point: 0.00256586074829 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 3, 0.2, 0, 0, 2, 0.57735, 2.3094, 2.94392, 2.94392, 3.4641, 3.69685, 3.69685, 4.50925 elapsed time for k point: 0.000701904296875 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 4, 0.3, 0, 0, 3, 0.866025, 2.02073, 3.01386, 3.01386, 3.52373, 3.52373, 3.75278, 4.73462 elapsed time for k point: 0.000663995742798 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 5, 0.4, 0, 0, 4, 1.1547, 1.73205, 3.10913, 3.10913, 3.3665, 3.3665, 4.04145, 4.96655 elapsed time for k point: 0.000688791275024 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 6, 0.5, 0, 0, 5, 1.44338, 1.44338, 3.22749, 3.22749, 3.22749, 3.22749, 4.33013, 5.20416 elapsed time for k point: 0.000700950622559 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 4 iterations. tefreqs:, 7, 0.5, 0.1, 0, 5.09902, 1.47196, 1.47196, 2.97209, 2.97209, 3.48807, 3.48807, 4.33974, 5.04975 elapsed time for k point: 0.00164294242859 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 8, 0.5, 0.2, 0, 5.38516, 1.55456, 1.55456, 2.72336, 2.72336, 3.75278, 3.75278, 4.36845, 4.90748 elapsed time for k point: 0.00297212600708 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 9, 0.5, 0.3, 0, 5.83095, 1.68325, 1.68325, 2.48328, 2.48328, 4.02078, 4.02078, 4.41588, 4.77842 elapsed time for k point: 0.000926971435547 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 10, 0.5, 0.4, 0, 6.40312, 1.84842, 1.84842, 2.25462, 2.25462, 4.29146, 4.29146, 4.48144, 4.66369 elapsed time for k point: 0.000898122787476 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 11, 0.5, 0.5, 0, 7.07107, 2.04124, 2.04124, 2.04124, 2.04124, 4.56435, 4.56435, 4.56435, 4.56435 elapsed time for k point: 0.00090217590332 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 12, 0.4, 0.4, 0, 5.65685, 1.63299, 2.08167, 2.08167, 2.44949, 4.20317, 4.20317, 4.39697, 4.39697 elapsed time for k point: 0.000708818435669 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 13, 0.3, 0.3, 0, 4.24264, 1.22474, 2.19848, 2.19848, 2.85774, 3.85141, 3.85141, 4.26224, 4.26224 elapsed time for k point: 0.000854969024658 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 14, 0.2, 0.2, 0, 2.82843, 0.816497, 2.38048, 2.38048, 3.26599, 3.51188, 3.51188, 4.16333, 4.16333 elapsed time for k point: 0.000828981399536 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 15, 0.1, 0.1, 0, 1.41421, 0.408248, 2.61406, 2.61406, 3.18852, 3.18852, 3.67423, 4.10284, 4.10284 elapsed time for k point: 0.000844955444336 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 1 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 2.88675, 2.88675, 2.88675, 2.88675, 4.08248, 4.08248, 4.08248 .elapsed time for k point: 0.000610828399658 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 2.04124145232 at Vector3<0.5, 0.5, 0.0> Band 2 range: 1.44337567297 at Vector3<0.5, 0.0, 0.0> to 2.88675134595 at Vector3<0.0, 0.0, 0.0> Band 3 range: 2.04124145232 at Vector3<0.5, 0.5, 0.0> to 3.22748612184 at Vector3<0.5, 0.0, 0.0> Band 4 range: 2.04124145232 at Vector3<0.5, 0.5, 0.0> to 3.26598632371 at Vector3<0.2, 0.2, 0.0> Band 5 range: 2.88675134595 at Vector3<0.0, 0.0, 0.0> to 4.56435464588 at Vector3<0.5, 0.5, 0.0> Band 6 range: 3.22748612184 at Vector3<0.5, 0.0, 0.0> to 4.56435464588 at Vector3<0.5, 0.5, 0.0> Band 7 range: 3.69684550214 at Vector3<0.2, 0.0, 0.0> to 4.56435464588 at Vector3<0.5, 0.5, 0.0> Band 8 range: 4.08248290464 at Vector3<0.0, 0.0, 0.0> to 5.20416499867 at Vector3<0.5, 0.0, 0.0> total elapsed time for run: 0.0241270065308 done test_fractional_lattice: 0.03s test_get_bfield ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00641798973083 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.466805934906 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 2.03406500816 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.303785800934 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.280207872391 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.326276063919 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.469167947769 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.390311002731 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.332653045654 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.283989906311 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.272759199142 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.270190000534 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.215426921844 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.248029947281 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.343684911728 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.406268835068 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.84650182724 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 7.5006108284 done Fixing b-field (band 8) phase by 1 + -2.58685e-07i; max ampl. = 4.48388 .test_get_bfield: 7.51s test_get_dfield ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00647211074829 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.477560043335 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.40029001236 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.30925488472 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.285793066025 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.331881999969 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.471920967102 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.38828587532 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.329690933228 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.282960176468 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.263355970383 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.262481212616 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.212774038315 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.246798038483 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.336488962173 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.396412134171 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.832854986191 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 6.83935499191 done Fixing d-field (band 8) phase by -2.58685e-07 + -1i; max ampl. = 8.66842 .test_get_dfield: 6.85s test_get_efield ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00675487518311 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.470458984375 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.38612508774 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.303364992142 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.281475067139 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.326756000519 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.465159893036 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.395703077316 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.329082012177 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.281824111938 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.270890951157 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.268476009369 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.212079048157 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.243494987488 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.337393045425 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.393322944641 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.832056999207 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 6.80847215652 done Fixing e-field (band 8) phase by -2.58685e-07 + -1i; max ampl. = 1.10099 .test_get_efield: 6.82s test_get_eigenvectors ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00639200210571 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.470164060593 Fixing h-field (band 1) phase by 1 + -0i; max ampl. = 1 Fixing h-field (band 2) phase by -0.791203 + -0.611554i; max ampl. = 5.12967 Fixing h-field (band 3) phase by -0.804161 + -0.594412i; max ampl. = 4.27896 Fixing h-field (band 4) phase by -0.925589 + -0.37853i; max ampl. = 4.27882 Fixing h-field (band 5) phase by -0.921393 + -0.388632i; max ampl. = 1.75894 Fixing h-field (band 6) phase by 0.798747 + -0.601666i; max ampl. = 3.7555 Fixing h-field (band 7) phase by 0.914893 + -0.403697i; max ampl. = 3.75555 Fixing h-field (band 8) phase by 0.0496898 + -0.998765i; max ampl. = 4.48388 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.37614893913 Fixing h-field (band 1) phase by -1 + 2.58759e-07i; max ampl. = 1.02721 Fixing h-field (band 2) phase by -0.999999 + 0.00112967i; max ampl. = 5.09036 Fixing h-field (band 3) phase by -0.000420085 + 1i; max ampl. = 3.73535 Fixing h-field (band 4) phase by 0.00025072 + 1i; max ampl. = 4.23726 Fixing h-field (band 5) phase by -1 + -7.07219e-05i; max ampl. = 1.49733 Fixing h-field (band 6) phase by 0.000417256 + 1i; max ampl. = 3.68915 Fixing h-field (band 7) phase by -2.54047e-05 + -1i; max ampl. = 2.46425 Fixing h-field (band 8) phase by -0.999999 + 0.00135078i; max ampl. = 4.67306 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.309410095215 Fixing h-field (band 1) phase by 1 + 1.61913e-11i; max ampl. = 1.11365 Fixing h-field (band 2) phase by -1 + -6.0599e-09i; max ampl. = 4.92243 Fixing h-field (band 3) phase by -1.60728e-09 + -1i; max ampl. = 2.65638 Fixing h-field (band 4) phase by 1.65826e-08 + -1i; max ampl. = 4.33159 Fixing h-field (band 5) phase by -9.10685e-10 + -1i; max ampl. = 4.52032 Fixing h-field (band 6) phase by -2.54569e-07 + -1i; max ampl. = 3.38228 Fixing h-field (band 7) phase by -1 + 6.01886e-10i; max ampl. = 2.75759 Fixing h-field (band 8) phase by -1 + -1.44262e-06i; max ampl. = 4.29116 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.283104896545 Fixing h-field (band 1) phase by 1 + 1.46382e-15i; max ampl. = 1.27437 Fixing h-field (band 2) phase by -1 + 2.5837e-13i; max ampl. = 4.45322 Fixing h-field (band 3) phase by 1 + 1.90596e-13i; max ampl. = 2.62315 Fixing h-field (band 4) phase by 1.3841e-09 + 1i; max ampl. = 4.45542 Fixing h-field (band 5) phase by 2.24877e-14 + -1i; max ampl. = 5.0129 Fixing h-field (band 6) phase by -1.49202e-09 + 1i; max ampl. = 2.79024 Fixing h-field (band 7) phase by 1 + -6.11944e-14i; max ampl. = 2.99991 Fixing h-field (band 8) phase by -1 + 2.41237e-08i; max ampl. = 3.46534 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.325300931931 Fixing h-field (band 1) phase by 1 + -2.31275e-17i; max ampl. = 1.5052 Fixing h-field (band 2) phase by -1 + 2.05769e-14i; max ampl. = 3.59052 Fixing h-field (band 3) phase by -1 + -3.21289e-15i; max ampl. = 3.69829 Fixing h-field (band 4) phase by -2.97216e-11 + -1i; max ampl. = 4.56151 Fixing h-field (band 5) phase by -4.55804e-14 + 1i; max ampl. = 5.08436 Fixing h-field (band 6) phase by -5.7344e-11 + 1i; max ampl. = 1.72494 Fixing h-field (band 7) phase by -1 + 4.72391e-15i; max ampl. = 3.24171 Fixing h-field (band 8) phase by -2.62183e-10 + -1i; max ampl. = 3.16645 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 44 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.509438037872 Fixing h-field (band 1) phase by -1 + -1.00867e-16i; max ampl. = 1.38878 Fixing h-field (band 2) phase by -1 + -4.95741e-16i; max ampl. = 3.48407 Fixing h-field (band 3) phase by 1 + -8.08231e-15i; max ampl. = 4.1103 Fixing h-field (band 4) phase by 3.3224e-13 + 1i; max ampl. = 4.60286 Fixing h-field (band 5) phase by -8.72097e-15 + -1i; max ampl. = 4.98821 Fixing h-field (band 6) phase by -1 + -5.83191e-12i; max ampl. = 2.6134 Fixing h-field (band 7) phase by -1 + 1.96034e-15i; max ampl. = 4.2595 Fixing h-field (band 8) phase by -3.89672e-12 + -1i; max ampl. = 3.64602 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.385290145874 Fixing h-field (band 1) phase by 1 + 4.30434e-16i; max ampl. = 1.39153 Fixing h-field (band 2) phase by -1 + -6.55198e-14i; max ampl. = 3.54504 Fixing h-field (band 3) phase by 1 + -6.86665e-13i; max ampl. = 3.95334 Fixing h-field (band 4) phase by 6.0047e-13 + -1i; max ampl. = 4.50492 Fixing h-field (band 5) phase by -2.53743e-14 + 1i; max ampl. = 4.84663 Fixing h-field (band 6) phase by 9.49411e-16 + -1i; max ampl. = 1.79067 Fixing h-field (band 7) phase by -3.00043e-13 + 1i; max ampl. = 3.04657 Fixing h-field (band 8) phase by -1 + 3.3689e-13i; max ampl. = 4.1605 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.328506231308 Fixing h-field (band 1) phase by 1 + -4.14098e-16i; max ampl. = 1.40192 Fixing h-field (band 2) phase by 1 + 1.96168e-13i; max ampl. = 3.73151 Fixing h-field (band 3) phase by -1 + 1.16289e-13i; max ampl. = 3.50756 Fixing h-field (band 4) phase by 1.20221e-12 + 1i; max ampl. = 4.25492 Fixing h-field (band 5) phase by -4.05804e-15 + -1i; max ampl. = 4.10702 Fixing h-field (band 6) phase by 4.28008e-15 + -1i; max ampl. = 3.1563 Fixing h-field (band 7) phase by -3.93746e-13 + 1i; max ampl. = 3.26912 Fixing h-field (band 8) phase by -1 + -8.89372e-14i; max ampl. = 4.78292 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.28050994873 Fixing h-field (band 1) phase by 1 + 3.11065e-13i; max ampl. = 4.05119 Fixing h-field (band 2) phase by 1 + 3.50894e-16i; max ampl. = 1.42991 Fixing h-field (band 3) phase by -1 + -1.03977e-13i; max ampl. = 2.78416 Fixing h-field (band 4) phase by 1.83759e-15 + -1i; max ampl. = 2.53227 Fixing h-field (band 5) phase by -2.43866e-11 + -1i; max ampl. = 3.9265 Fixing h-field (band 6) phase by 2.64845e-14 + -1i; max ampl. = 4.52548 Fixing h-field (band 7) phase by -1.92075e-12 + -1i; max ampl. = 3.4739 Fixing h-field (band 8) phase by -1 + 7.47434e-12i; max ampl. = 4.9086 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.272088050842 Fixing h-field (band 1) phase by 1 + -2.78195e-16i; max ampl. = 4.46619 Fixing h-field (band 2) phase by -1 + 5.34534e-12i; max ampl. = 1.51506 Fixing h-field (band 3) phase by 1 + 7.3754e-16i; max ampl. = 1.66014 Fixing h-field (band 4) phase by -1 + 1.00067e-10i; max ampl. = 1.64641 Fixing h-field (band 5) phase by 2.02673e-14 + 1i; max ampl. = 3.54599 Fixing h-field (band 6) phase by -1.14711e-11 + 1i; max ampl. = 4.96988 Fixing h-field (band 7) phase by -5.3903e-15 + 1i; max ampl. = 3.72139 Fixing h-field (band 8) phase by -1 + -2.27983e-14i; max ampl. = 4.85167 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.269372940063 Fixing h-field (band 1) phase by 1 + 3.45026e-16i; max ampl. = 4.70977 Fixing h-field (band 2) phase by 1 + 4.1781e-13i; max ampl. = 1.38038 Fixing h-field (band 3) phase by -4.15507e-13 + 1i; max ampl. = 1.85505 Fixing h-field (band 4) phase by -1 + 7.58874e-11i; max ampl. = 1.90199 Fixing h-field (band 5) phase by -1 + 9.57011e-15i; max ampl. = 3.83362 Fixing h-field (band 6) phase by 1.175e-11 + -1i; max ampl. = 4.82728 Fixing h-field (band 7) phase by -1.63875e-12 + 1i; max ampl. = 5.11981 Fixing h-field (band 8) phase by -1 + 5.1434e-14i; max ampl. = 4.68981 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.213726043701 Fixing h-field (band 1) phase by 1 + -5.70193e-17i; max ampl. = 3.59873 Fixing h-field (band 2) phase by 1 + -2.62827e-16i; max ampl. = 3.10702 Fixing h-field (band 3) phase by -3.10331e-10 + -1i; max ampl. = 1.92561 Fixing h-field (band 4) phase by 1.3935e-15 + -1i; max ampl. = 1.49149 Fixing h-field (band 5) phase by 2.28168e-15 + 1i; max ampl. = 3.30734 Fixing h-field (band 6) phase by 1.56498e-10 + -1i; max ampl. = 5.21642 Fixing h-field (band 7) phase by -1.3935e-15 + 1i; max ampl. = 3.66792 Fixing h-field (band 8) phase by 1 + -3.19795e-10i; max ampl. = 4.83365 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.250347852707 Fixing h-field (band 1) phase by 1 + 5.09795e-17i; max ampl. = 1.81199 Fixing h-field (band 2) phase by -1 + -1.92651e-16i; max ampl. = 4.51433 Fixing h-field (band 3) phase by -4.15077e-11 + -1i; max ampl. = 2.16532 Fixing h-field (band 4) phase by 2.09671e-13 + 1i; max ampl. = 3.56127 Fixing h-field (band 5) phase by 2.4042e-14 + 1i; max ampl. = 2.47045 Fixing h-field (band 6) phase by -2.43668e-09 + 1i; max ampl. = 5.05859 Fixing h-field (band 7) phase by -4.91446e-13 + 1i; max ampl. = 3.23411 Fixing h-field (band 8) phase by 1 + 8.93323e-10i; max ampl. = 4.7734 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.341526985168 Fixing h-field (band 1) phase by 1 + 1.96861e-16i; max ampl. = 1.2604 Fixing h-field (band 2) phase by -1 + -2.80791e-15i; max ampl. = 4.86397 Fixing h-field (band 3) phase by -7.60423e-11 + 1i; max ampl. = 2.6696 Fixing h-field (band 4) phase by 4.8467e-14 + 1i; max ampl. = 3.93612 Fixing h-field (band 5) phase by 3.1833e-10 + -1i; max ampl. = 4.6489 Fixing h-field (band 6) phase by -1.16076e-14 + -1i; max ampl. = 2.84446 Fixing h-field (band 7) phase by -1 + 1.99842e-15i; max ampl. = 3.74182 Fixing h-field (band 8) phase by -1 + 1.97956e-11i; max ampl. = 4.03853 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.406568050385 Fixing h-field (band 1) phase by 1 + 1.21105e-16i; max ampl. = 1.05606 Fixing h-field (band 2) phase by -1 + 1.90466e-15i; max ampl. = 5.06002 Fixing h-field (band 3) phase by 2.65142e-10 + -1i; max ampl. = 3.59476 Fixing h-field (band 4) phase by -1.07194e-14 + 1i; max ampl. = 4.14887 Fixing h-field (band 5) phase by -1 + -1.04798e-09i; max ampl. = 1.36944 Fixing h-field (band 6) phase by -6.70414e-13 + -1i; max ampl. = 3.24838 Fixing h-field (band 7) phase by 3.11216e-11 + -1i; max ampl. = 2.57459 Fixing h-field (band 8) phase by -1 + -6.70395e-15i; max ampl. = 4.85277 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.845847845078 Fixing h-field (band 1) phase by 1 + -0i; max ampl. = 1 Fixing h-field (band 2) phase by 1 + -1.05579e-14i; max ampl. = 5.12967 Fixing h-field (band 3) phase by 1.64884e-11 + -1i; max ampl. = 4.27896 Fixing h-field (band 4) phase by 2.80235e-09 + -1i; max ampl. = 4.27882 Fixing h-field (band 5) phase by 1 + -2.61597e-09i; max ampl. = 1.75894 Fixing h-field (band 6) phase by -1.11361e-12 + 1i; max ampl. = 3.7555 Fixing h-field (band 7) phase by -3.34637e-11 + -1i; max ampl. = 3.75555 Fixing h-field (band 8) phase by -1 + -4.03961e-14i; max ampl. = 4.48388 .Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970507 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293236 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097775% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293236) to band 8 (1.08786896351), 0.165232672435% total elapsed time for run: 6.92754817009 done test_get_eigenvectors: 6.97s test_get_hfield ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00637793540955 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.476835012436 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.410187006 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.313924074173 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.283368110657 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.328845977783 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.459348917007 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.381403923035 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.326131105423 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.284124135971 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.280369997025 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.273694992065 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.212198972702 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.249166965485 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.342143058777 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.403212070465 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.846593141556 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 6.88200378418 done Fixing h-field (band 8) phase by 1 + -2.58685e-07i; max ampl. = 4.48388 .test_get_hfield: 6.89s test_handle_cvector ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (0.866025, 0.5, 0) (0.866025, -0.5, 0) (0, 0, 1) Cell volume = 0.866025 Reciprocal lattice vectors (/ 2 pi): (0.57735, 1, -0) (0.57735, -1, 0) (-0, 0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.0, 0.1, 0.0> Vector3<0.0, 0.2, 0.0> Vector3<0.0, 0.3, 0.0> Vector3<0.0, 0.4, 0.0> Vector3<0.0, 0.5, 0.0> Vector3<-0.0666666666667, 0.466666666667, 0.0> Vector3<-0.133333333333, 0.433333333333, 0.0> Vector3<-0.2, 0.4, 0.0> Vector3<-0.266666666667, 0.366666666667, 0.0> Vector3<-0.333333333333, 0.333333333333, 0.0> Vector3<-0.266666666667, 0.266666666667, 0.0> Vector3<-0.2, 0.2, 0.0> Vector3<-0.133333333333, 0.133333333333, 0.0> Vector3<-0.0666666666667, 0.0666666666667, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.0067892074585 solve_kpoint (0,0,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1, tm band 2, tm band 3, tm band 4, tm band 5, tm band 6, tm band 7, tm band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 24 iterations. tmfreqs:, 1, 0, 0, 0, 0, 0, 0.560518, 0.560561, 0.593296, 0.837451, 0.837595, 0.994129, 1.09832 elapsed time for k point: 0.222469091415 solve_kpoint (0,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tmfreqs:, 2, 0, 0.1, 0, 0.11547, 0.0711319, 0.538981, 0.559429, 0.617095, 0.834123, 0.839462, 0.988272, 1.08637 elapsed time for k point: 0.214592933655 solve_kpoint (0,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 15 iterations. tmfreqs:, 3, 0, 0.2, 0, 0.23094, 0.138898, 0.508574, 0.556587, 0.65398, 0.825087, 0.84452, 0.968999, 1.05281 elapsed time for k point: 0.179090023041 solve_kpoint (0,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 14 iterations. tmfreqs:, 4, 0, 0.3, 0, 0.34641, 0.198939, 0.479631, 0.553145, 0.693119, 0.813353, 0.850964, 0.932869, 1.02598 elapsed time for k point: 0.166975975037 solve_kpoint (0,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 5, 0, 0.4, 0, 0.46188, 0.244064, 0.4557, 0.550414, 0.730028, 0.80289, 0.856372, 0.891379, 1.01409 elapsed time for k point: 0.155342817307 solve_kpoint (0,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 6, 0, 0.5, 0, 0.57735, 0.262015, 0.445331, 0.549383, 0.749186, 0.797864, 0.85849, 0.870609, 1.01087 elapsed time for k point: 0.15700507164 solve_kpoint (-0.0666667,0.466667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 7, -0.0666667, 0.466667, 0, 0.581187, 0.262984, 0.4475, 0.545804, 0.752448, 0.797093, 0.860461, 0.870245, 0.99895 elapsed time for k point: 0.144558906555 solve_kpoint (-0.133333,0.433333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 8, -0.133333, 0.433333, 0, 0.592546, 0.265671, 0.453801, 0.535912, 0.761319, 0.795166, 0.866056, 0.869135, 0.973413 elapsed time for k point: 0.144008874893 solve_kpoint (-0.2,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 10 iterations. tmfreqs:, 9, -0.2, 0.4, 0, 0.61101, 0.269404, 0.463648, 0.52172, 0.773443, 0.792931, 0.867201, 0.874681, 0.94487 elapsed time for k point: 0.122184991837 solve_kpoint (-0.266667,0.366667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 10 iterations. tmfreqs:, 10, -0.266667, 0.366667, 0, 0.635959, 0.273, 0.476141, 0.505606, 0.78524, 0.791235, 0.864672, 0.885801, 0.918597 elapsed time for k point: 0.123059034348 solve_kpoint (-0.333333,0.333333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 9 iterations. tmfreqs:, 11, -0.333333, 0.333333, 0, 0.666667, 0.27469, 0.489984, 0.490239, 0.79072, 0.790832, 0.863041, 0.899109, 0.89925 elapsed time for k point: 0.111253023148 Fixing e-field (band 1) phase by -1 + 4.11936e-08i; max ampl. = 0.93911 Fixing e-field (band 2) phase by 4.11936e-08 + 1i; max ampl. = 1.08316 Fixing e-field (band 3) phase by 1 + -4.11936e-08i; max ampl. = 0.877953 Fixing e-field (band 4) phase by 1 + -4.11936e-08i; max ampl. = 1.24657 Fixing e-field (band 5) phase by 4.11936e-08 + 1i; max ampl. = 1.10168 Fixing e-field (band 6) phase by 1 + -4.11936e-08i; max ampl. = 1.76186 Fixing e-field (band 7) phase by -1 + 4.11936e-08i; max ampl. = 1.0881 Fixing e-field (band 8) phase by -1 + 4.11937e-08i; max ampl. = 1.08096 solve_kpoint (-0.266667,0.266667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 11 iterations. tmfreqs:, 12, -0.266667, 0.266667, 0, 0.533333, 0.2632, 0.47091, 0.51804, 0.764413, 0.795091, 0.864427, 0.896871, 0.932925 elapsed time for k point: 0.134650945663 solve_kpoint (-0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 13, -0.2, 0.2, 0, 0.4, 0.222593, 0.476537, 0.539917, 0.715636, 0.806516, 0.856013, 0.929969, 0.977199 elapsed time for k point: 0.144895076752 solve_kpoint (-0.133333,0.133333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 14, -0.133333, 0.133333, 0, 0.266667, 0.15856, 0.501245, 0.552927, 0.666818, 0.82116, 0.846938, 0.963589, 1.03113 elapsed time for k point: 0.155514955521 solve_kpoint (-0.0666667,0.0666667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 17 iterations. tmfreqs:, 15, -0.0666667, 0.0666667, 0, 0.133333, 0.0819275, 0.534465, 0.558896, 0.622523, 0.832982, 0.840137, 0.98638, 1.08149 elapsed time for k point: 0.203498125076 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 16 iterations. tmfreqs:, 16, 0, 0, 0, 0, 0, 0.560518, 0.560561, 0.593296, 0.837451, 0.837595, 0.994129, 1.09832 .elapsed time for k point: 0.150393009186 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.274690225862 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 2 range: 0.445331080847 at Vector3<0.0, 0.5, 0.0> to 0.560518142316 at Vector3<0.0, 0.0, 0.0> Band 3 range: 0.490238914903 at Vector3<-0.333333333333, 0.333333333333, 0.0> to 0.56056079478 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.593296087359 at Vector3<0.0, 0.0, 0.0> to 0.790719597444 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 5 range: 0.790832076333 at Vector3<-0.333333333333, 0.333333333333, 0.0> to 0.837451116754 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.837594852844 at Vector3<0.0, 0.0, 0.0> to 0.86720092649 at Vector3<-0.2, 0.4, 0.0> Band 7 range: 0.869134995574 at Vector3<-0.133333333333, 0.433333333333, 0.0> to 0.994129102266 at Vector3<0.0, 0.0, 0.0> Band 8 range: 0.899249909555 at Vector3<-0.333333333333, 0.333333333333, 0.0> to 1.09831835292 at Vector3<0.0, 0.0, 0.0> Gap from band 1 (0.274690225862) to band 2 (0.445331080847), 47.3988348385% Gap from band 3 (0.56056079478) to band 4 (0.593296087359), 5.6740646237% Gap from band 4 (0.790719597444) to band 5 (0.790832076333), 0.0142238651132% Gap from band 5 (0.837451116754) to band 6 (0.837594852844), 0.0171620472726% Gap from band 6 (0.86720092649) to band 7 (0.869134995574), 0.222775910928% total elapsed time for run: 2.54833316803 done Read lattice vectors Read Bloch wavevector (-0.333333, 0.333333, 0) Input lattice = (0.866025, 0.5, 0), (0.866025, -0.5, 0), (0, 0, 1) Output lattice = (2.59808, 1.5, 0), (1.29904, -2.25, 0), (0, 0, 3) Found complex vector dataset... Input data is rank 2, size 32x32x1. Rotating vectors by matrix [ 0.8660254038, 0.5, -0 0.5, -0.8660254038, -0 -0, -0, 1 ] Output data 96x83x1. real part range: 0 .. 0 imag part range: 0 .. 0 real part range: 0 .. 0 imag part range: 0 .. 0 real part range: -1.03932 .. 1.03493 imag part range: -1.08496 .. 1.08496 test_handle_cvector: 2.67s test_hermitian_eps ======================== Initializing eigensolver data Computing 10 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 10 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.11, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Initializing mu function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 10 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.166666666667, 0.0, 0.0> Vector3<0.333333333333, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.166666666667, 0.0> Vector3<0.5, 0.333333333333, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.333333333333, 0.333333333333, 0.0> Vector3<0.166666666667, 0.166666666667, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00764584541321 solve_kpoint (0,0,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1, tm band 2, tm band 3, tm band 4, tm band 5, tm band 6, tm band 7, tm band 8, tm band 9, tm band 10 Solving for bands 2 to 10... iteration 162: trace = 2.716259618292947 (0.105573% change) iteration 323: trace = 2.415480692145028 (0.00566459% change) iteration 486: trace = 2.406721399709238 (0.000343503% change) iteration 649: trace = 2.400122728544217 (0.00170565% change) iteration 806: trace = 2.395264928015867 (0.00153722% change) iteration 968: trace = 2.393418164831059 (0.000209138% change) iteration 1128: trace = 2.393105459736827 (1.10188e-05% change) iteration 1292: trace = 2.3930499296691 (7.87775e-06% change) iteration 1455: trace = 2.393041544015758 (3.47106e-07% change) iteration 1617: trace = 2.393039552670461 (1.94975e-08% change) iteration 1781: trace = 2.393039444820336 (2.98051e-09% change) Finished solving for bands 2 to 10 after 1865 iterations. tmfreqs:, 1, 0, 0, 0, 0, 0, 0.265885, 0.356852, 0.36899, 0.503897, 0.506552, 0.539911, 0.635681, 0.645852, 0.660016 elapsed time for k point: 46.2249591351 solve_kpoint (0.166667,0,0): Solving for bands 1 to 10... iteration 141: trace = 2.412712265494795 (6.1503e-05% change) iteration 281: trace = 2.41265237425111 (4.64701e-06% change) iteration 423: trace = 2.412637324429995 (1.09868e-06% change) iteration 566: trace = 2.412632337218161 (7.63457e-07% change) iteration 708: trace = 2.412630640794031 (4.97511e-07% change) iteration 849: trace = 2.412630061608691 (6.31127e-08% change) iteration 990: trace = 2.412629853534707 (9.57634e-08% change) iteration 1131: trace = 2.412629783042575 (6.86903e-09% change) iteration 1270: trace = 2.412629758748946 (9.16319e-09% change) iteration 1408: trace = 2.412629750263828 (6.67451e-10% change) Finished solving for bands 1 to 10 after 1481 iterations. tmfreqs:, 2, 0.166667, 0, 0, 0.166667, 0.123306, 0.278292, 0.357366, 0.369461, 0.503797, 0.506642, 0.538217, 0.63557, 0.645595, 0.659431 elapsed time for k point: 42.3075129986 solve_kpoint (0.333333,0,0): Solving for bands 1 to 10... iteration 139: trace = 2.452783152599625 (0.000611489% change) iteration 278: trace = 2.452019325297326 (0.000112422% change) iteration 416: trace = 2.451846672925755 (1.6187e-05% change) iteration 555: trace = 2.451804002951198 (5.03206e-06% change) iteration 694: trace = 2.451793178765064 (1.40527e-06% change) iteration 835: trace = 2.451790336710428 (5.03633e-07% change) iteration 975: trace = 2.451789646221317 (1.34173e-07% change) iteration 1114: trace = 2.451789470773117 (2.69858e-08% change) iteration 1252: trace = 2.451789431695673 (1.96351e-09% change) iteration 1389: trace = 2.451789423648712 (7.85374e-10% change) Finished solving for bands 1 to 10 after 1427 iterations. tmfreqs:, 3, 0.333333, 0, 0, 0.333333, 0.194655, 0.331458, 0.361679, 0.377947, 0.502693, 0.506755, 0.527227, 0.633335, 0.644215, 0.653287 elapsed time for k point: 41.3002080917 solve_kpoint (0.5,0,0): Solving for bands 1 to 10... iteration 137: trace = 2.449919503984167 (0.000801909% change) iteration 275: trace = 2.44936286862946 (4.9295e-05% change) iteration 413: trace = 2.449307548333651 (2.86803e-06% change) iteration 551: trace = 2.449296314548818 (1.15488e-06% change) iteration 689: trace = 2.449293639128595 (4.68467e-07% change) iteration 828: trace = 2.449292978908139 (6.3741e-08% change) iteration 967: trace = 2.449292812603551 (2.28606e-08% change) iteration 1105: trace = 2.449292771133767 (5.65326e-09% change) iteration 1245: trace = 2.449292760401294 (8.73186e-10% change) Finished solving for bands 1 to 10 after 1361 iterations. tmfreqs:, 4, 0.5, 0, 0, 0.5, 0.208799, 0.348978, 0.365278, 0.443856, 0.477901, 0.506845, 0.509076, 0.617527, 0.63971, 0.64689 elapsed time for k point: 40.2172801495 solve_kpoint (0.5,0.166667,0): Solving for bands 1 to 10... iteration 139: trace = 2.486445722681571 (0.000629481% change) iteration 280: trace = 2.48591636477624 (2.69577e-05% change) iteration 422: trace = 2.485870741946524 (3.84206e-06% change) iteration 566: trace = 2.485865800982295 (3.63964e-07% change) iteration 712: trace = 2.485865260035932 (6.31523e-08% change) iteration 855: trace = 2.485865200166598 (3.91591e-09% change) iteration 1004: trace = 2.485865195004872 (3.15828e-10% change) Finished solving for bands 1 to 10 after 1007 iterations. tmfreqs:, 5, 0.5, 0.166667, 0, 0.527046, 0.210673, 0.351103, 0.364915, 0.453355, 0.500502, 0.507018, 0.510125, 0.616821, 0.642478, 0.646894 elapsed time for k point: 28.1726481915 solve_kpoint (0.5,0.333333,0): Solving for bands 1 to 10... iteration 148: trace = 2.57932808648309 (0.000517755% change) iteration 298: trace = 2.578890289657562 (1.54784e-05% change) iteration 447: trace = 2.578881809546757 (2.43784e-07% change) iteration 597: trace = 2.578881667696428 (9.70032e-10% change) Finished solving for bands 1 to 10 after 693 iterations. tmfreqs:, 6, 0.5, 0.333333, 0, 0.600925, 0.214081, 0.353217, 0.365001, 0.471977, 0.507165, 0.51079, 0.563894, 0.615052, 0.646178, 0.648357 elapsed time for k point: 18.634554863 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 10... iteration 141: trace = 2.653992465279528 (9.85455e-05% change) iteration 283: trace = 2.653861513258519 (2.67907e-07% change) iteration 429: trace = 2.653860960413702 (1.02569e-09% change) Finished solving for bands 1 to 10 after 507 iterations. tmfreqs:, 7, 0.5, 0.5, 0, 0.707107, 0.215649, 0.353602, 0.365269, 0.480748, 0.507335, 0.512534, 0.60792, 0.619784, 0.648908, 0.650323 elapsed time for k point: 14.2016239166 solve_kpoint (0.333333,0.333333,0): Solving for bands 1 to 10... iteration 145: trace = 2.532352273585706 (0.000116505% change) iteration 288: trace = 2.532228919444875 (4.06527e-06% change) iteration 424: trace = 2.532226671810401 (7.53543e-08% change) iteration 559: trace = 2.532226606140349 (6.0194e-10% change) Finished solving for bands 1 to 10 after 627 iterations. tmfreqs:, 8, 0.333333, 0.333333, 0, 0.471405, 0.210879, 0.35463, 0.361245, 0.439486, 0.507022, 0.508252, 0.543815, 0.620599, 0.646589, 0.651154 elapsed time for k point: 18.0380990505 solve_kpoint (0.166667,0.166667,0): Solving for bands 1 to 10... iteration 141: trace = 2.429272896209639 (4.95244e-05% change) iteration 281: trace = 2.429168754755469 (5.01843e-06% change) iteration 419: trace = 2.429160808378148 (3.85958e-07% change) iteration 556: trace = 2.429159961273913 (5.56282e-08% change) iteration 693: trace = 2.429159864630376 (7.28929e-09% change) iteration 831: trace = 2.429159854691398 (1.03366e-09% change) Finished solving for bands 1 to 10 after 863 iterations. tmfreqs:, 9, 0.166667, 0.166667, 0, 0.235702, 0.162353, 0.295874, 0.356214, 0.372161, 0.504258, 0.506735, 0.537355, 0.633231, 0.645916, 0.65717 elapsed time for k point: 25.0485889912 solve_kpoint (0,0,0): Solving for bands 2 to 10... iteration 161: trace = 2.393051932955181 (6.42945e-06% change) iteration 331: trace = 2.39303984741599 (1.24818e-07% change) iteration 504: trace = 2.393039447602963 (1.84225e-08% change) iteration 680: trace = 2.393039432135353 (3.6473e-10% change) Finished solving for bands 2 to 10 after 709 iterations. tmfreqs:, 10, 0, 0, 0, 0, 0, 0.265885, 0.356852, 0.36899, 0.503897, 0.506552, 0.539911, 0.635681, 0.645852, 0.660016 .elapsed time for k point: 16.7265660763 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.215648526303 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.265884978562 at Vector3<0.0, 0.0, 0.0> to 0.354630240548 at Vector3<0.333333333333, 0.333333333333, 0.0> Band 3 range: 0.356214235591 at Vector3<0.166666666667, 0.166666666667, 0.0> to 0.365278335177 at Vector3<0.5, 0.0, 0.0> Band 4 range: 0.368990136665 at Vector3<0.0, 0.0, 0.0> to 0.48074846784 at Vector3<0.5, 0.5, 0.0> Band 5 range: 0.477901482401 at Vector3<0.5, 0.0, 0.0> to 0.507335289426 at Vector3<0.5, 0.5, 0.0> Band 6 range: 0.506551858749 at Vector3<0.0, 0.0, 0.0> to 0.512534369238 at Vector3<0.5, 0.5, 0.0> Band 7 range: 0.509075874398 at Vector3<0.5, 0.0, 0.0> to 0.607920081806 at Vector3<0.5, 0.5, 0.0> Band 8 range: 0.615051876486 at Vector3<0.5, 0.333333333333, 0.0> to 0.635680784606 at Vector3<0.0, 0.0, 0.0> Band 9 range: 0.639709760933 at Vector3<0.5, 0.0, 0.0> to 0.648907835931 at Vector3<0.5, 0.5, 0.0> Band 10 range: 0.646889890768 at Vector3<0.5, 0.0, 0.0> to 0.660016332876 at Vector3<0.0, 0.0, 0.0> Gap from band 1 (0.215648526303) to band 2 (0.265884978562), 20.8651949456% Gap from band 2 (0.354630240548) to band 3 (0.356214235591), 0.44566571058% Gap from band 3 (0.365278335177) to band 4 (0.368990136665), 1.01102025493% Gap from band 7 (0.607920081806) to band 8 (0.615051876486), 1.16630551191% Gap from band 8 (0.635680784606) to band 9 (0.639709760933), 0.631802758976% total elapsed time for run: 290.882493019 done test_hermitian_eps: 290.89s test_hole_slab ======================== Initializing eigensolver data Computing 9 bands with 1e-12 tolerance Working in 3 dimensions. Grid size is 32 x 32 x 64. Solving for 9 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (0.866025, 0.5, 0) (0.866025, -0.5, 0) (0, 0, 4) Cell volume = 3.4641 Reciprocal lattice vectors (/ 2 pi): (0.57735, 1, -0) (0.57735, -1, 0) (-0, 0, 0.25) Geometric objects: block, center = (0,0,1) size (1e+20,1e+20,2) axes (1,0,0), (0,1,0), (0,0,1) block, center = (0,0,0) size (1e+20,1e+20,0.5) axes (1,0,0), (0,1,0), (0,0,1) cylinder, center = (0,0,0) radius 0.3, height 4, axis (0, 0, 1) Geometric object tree has depth 3 and 41 object nodes (vs. 3 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: zeven. Initializing fields to random numbers... 1 k-points Vector3<-0.333333333333, 0.333333333333, 0.0> elapsed time for initialization: 0.418561935425 solve_kpoint (-0.333333,0.333333,0): zevenfreqs:, k index, k1, k2, k3, kmag/2pi, zeven band 1, zeven band 2, zeven band 3, zeven band 4, zeven band 5, zeven band 6, zeven band 7, zeven band 8, zeven band 9 Solving for bands 1 to 9... iteration 3: trace = 2.669410204363277 (21.1015% change) iteration 6: trace = 2.228076475135524 (2.39512% change) iteration 9: trace = 2.193156579990846 (0.194403% change) iteration 12: trace = 2.188582973206205 (0.0338964% change) iteration 15: trace = 2.188000083848737 (0.00306256% change) iteration 18: trace = 2.187961616111381 (0.000201768% change) iteration 21: trace = 2.187958549134368 (1.53993e-05% change) iteration 24: trace = 2.187958074545588 (2.68951e-06% change) iteration 27: trace = 2.187958069720183 (6.50761e-10% change) iteration 30: trace = 2.18795806970639 (1.29211e-10% change) Finished solving for bands 1 to 9 after 31 iterations. zevenfreqs:, 1, -0.333333, 0.333333, 0, 0.666667, 0.265718, 0.356033, 0.35608, 0.513443, 0.529044, 0.529286, 0.586884, 0.587044, 0.59253 elapsed time for k point: 43.5060830116 total elapsed time for run: 43.9249250889 done Fixing h-field (band 9) phase by -0.0246538 + -0.999696i; max ampl. = 2.37913 .Outputting fields to test_hole_slab-h.k01.b09.z.zeven.h5... eigensolver iterations for 1 kpoints: 31.0-31.0, mean = 31.0, median = 31.0 mean flops per iteration = 232048195.548 mean time per iteration = 1.41693306738 s test_hole_slab: 44.01s test_honey_rods ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (0.866025, 0.5, 0) (0.866025, -0.5, 0) (0, 0, 1) Cell volume = 0.866025 Reciprocal lattice vectors (/ 2 pi): (0.57735, 1, -0) (0.57735, -1, 0) (-0, 0, 1) Geometric objects: cylinder, center = (0.166667,0.166667,0) radius 0.14, height 1e+20, axis (0, 0, 1) cylinder, center = (-0.166667,-0.166667,0) radius 0.14, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 2 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.0, 0.1, 0.0> Vector3<0.0, 0.2, 0.0> Vector3<0.0, 0.3, 0.0> Vector3<0.0, 0.4, 0.0> Vector3<0.0, 0.5, 0.0> Vector3<-0.0666666666667, 0.466666666667, 0.0> Vector3<-0.133333333333, 0.433333333333, 0.0> Vector3<-0.2, 0.4, 0.0> Vector3<-0.266666666667, 0.366666666667, 0.0> Vector3<-0.333333333333, 0.333333333333, 0.0> Vector3<-0.266666666667, 0.266666666667, 0.0> Vector3<-0.2, 0.2, 0.0> Vector3<-0.133333333333, 0.133333333333, 0.0> Vector3<-0.0666666666667, 0.0666666666667, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00662803649902 solve_kpoint (0,0,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1, tm band 2, tm band 3, tm band 4, tm band 5, tm band 6, tm band 7, tm band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 38 iterations. tmfreqs:, 1, 0, 0, 0, 0, 0, 0.429848, 0.72559, 0.725871, 0.769398, 0.785279, 0.785658, 1.14928 elapsed time for k point: 0.340399026871 solve_kpoint (0,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tmfreqs:, 2, 0, 0.1, 0, 0.11547, 0.0718091, 0.426256, 0.719077, 0.721195, 0.746706, 0.789405, 0.817423, 1.1362 elapsed time for k point: 0.389369010925 solve_kpoint (0,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 17 iterations. tmfreqs:, 3, 0, 0.2, 0, 0.23094, 0.141741, 0.415465, 0.686677, 0.711385, 0.749716, 0.79757, 0.853936, 1.10829 elapsed time for k point: 0.19997882843 solve_kpoint (0,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 16 iterations. tmfreqs:, 4, 0, 0.3, 0, 0.34641, 0.20751, 0.397084, 0.652562, 0.701411, 0.762486, 0.805503, 0.884623, 1.08016 elapsed time for k point: 0.18413901329 solve_kpoint (0,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 15 iterations. tmfreqs:, 5, 0, 0.4, 0, 0.46188, 0.265341, 0.370741, 0.628064, 0.694375, 0.774438, 0.810881, 0.90516, 1.06067 elapsed time for k point: 0.173380851746 solve_kpoint (0,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 6, 0, 0.5, 0, 0.57735, 0.29861, 0.348622, 0.619112, 0.691863, 0.779379, 0.812758, 0.912256, 1.05404 elapsed time for k point: 0.151591062546 solve_kpoint (-0.0666667,0.466667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 7, -0.0666667, 0.466667, 0, 0.581187, 0.300268, 0.34895, 0.613584, 0.697444, 0.77731, 0.813624, 0.911843, 1.05612 elapsed time for k point: 0.140470981598 solve_kpoint (-0.133333,0.433333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 14 iterations. tmfreqs:, 8, -0.133333, 0.433333, 0, 0.592546, 0.305133, 0.349455, 0.601266, 0.710158, 0.771875, 0.815569, 0.910763, 1.06226 elapsed time for k point: 0.163213014603 solve_kpoint (-0.2,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 14 iterations. tmfreqs:, 9, -0.2, 0.4, 0, 0.61101, 0.312896, 0.348732, 0.588291, 0.724572, 0.764453, 0.817539, 0.909459, 1.0721 elapsed time for k point: 0.163318157196 solve_kpoint (-0.266667,0.366667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 16 iterations. tmfreqs:, 10, -0.266667, 0.366667, 0, 0.635959, 0.323089, 0.344682, 0.578717, 0.737675, 0.756131, 0.818898, 0.9085, 1.08513 elapsed time for k point: 0.190030097961 solve_kpoint (-0.333333,0.333333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tmfreqs:, 11, -0.333333, 0.333333, 0, 0.666667, 0.335117, 0.335185, 0.575171, 0.747622, 0.747877, 0.819365, 0.908267, 1.10053 elapsed time for k point: 0.321753978729 solve_kpoint (-0.266667,0.266667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 15 iterations. tmfreqs:, 12, -0.266667, 0.266667, 0, 0.533333, 0.29626, 0.362261, 0.589196, 0.732899, 0.756464, 0.817346, 0.906977, 1.07543 elapsed time for k point: 0.17466211319 solve_kpoint (-0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 13, -0.2, 0.2, 0, 0.4, 0.235812, 0.389044, 0.624419, 0.723246, 0.753158, 0.811064, 0.894195, 1.07529 elapsed time for k point: 0.151673078537 solve_kpoint (-0.133333,0.133333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 14, -0.133333, 0.133333, 0, 0.266667, 0.162664, 0.41101, 0.66948, 0.720558, 0.745707, 0.801251, 0.86394, 1.09993 elapsed time for k point: 0.149857997894 solve_kpoint (-0.0666667,0.0666667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 16 iterations. tmfreqs:, 15, -0.0666667, 0.0666667, 0, 0.133333, 0.0828005, 0.425068, 0.71283, 0.723369, 0.744337, 0.790724, 0.823156, 1.13248 elapsed time for k point: 0.185375928879 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tmfreqs:, 16, 0, 0, 0, 0, 0, 0.429848, 0.72559, 0.725871, 0.769398, 0.785279, 0.785658, 1.14928 elapsed time for k point: 0.808846950531 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.335116766035 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 2 range: 0.335185075992 at Vector3<-0.333333333333, 0.333333333333, 0.0> to 0.429848112378 at Vector3<0.0, 0.0, 0.0> Band 3 range: 0.575170934543 at Vector3<-0.333333333333, 0.333333333333, 0.0> to 0.725589767226 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.691862772477 at Vector3<0.0, 0.5, 0.0> to 0.747622077831 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 5 range: 0.744337449709 at Vector3<-0.0666666666667, 0.0666666666667, 0.0> to 0.779379221209 at Vector3<0.0, 0.5, 0.0> Band 6 range: 0.785278698442 at Vector3<0.0, 0.0, 0.0> to 0.819365286171 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 7 range: 0.785657777186 at Vector3<0.0, 0.0, 0.0> to 0.912256043901 at Vector3<0.0, 0.5, 0.0> Band 8 range: 1.05403505081 at Vector3<0.0, 0.5, 0.0> to 1.14927693892 at Vector3<0.0, 0.0, 0.0> Gap from band 1 (0.335116766035) to band 2 (0.335185075992), 0.0203818494639% Gap from band 2 (0.429848112378) to band 3 (0.575170934543), 28.9194165245% Gap from band 5 (0.779379221209) to band 6 (0.785278698442), 0.754091633513% Gap from band 7 (0.912256043901) to band 8 (1.05403505081), 14.4209580456% total elapsed time for run: 3.89857006073 done Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (0.866025, 0.5, 0) (0.866025, -0.5, 0) (0, 0, 1) Cell volume = 0.866025 Reciprocal lattice vectors (/ 2 pi): (0.57735, 1, -0) (0.57735, -1, 0) (-0, 0, 1) Geometric objects: cylinder, center = (0.166667,0.166667,0) radius 0.14, height 1e+20, axis (0, 0, 1) cylinder, center = (-0.166667,-0.166667,0) radius 0.14, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 2 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.0, 0.1, 0.0> Vector3<0.0, 0.2, 0.0> Vector3<0.0, 0.3, 0.0> Vector3<0.0, 0.4, 0.0> Vector3<0.0, 0.5, 0.0> Vector3<-0.0666666666667, 0.466666666667, 0.0> Vector3<-0.133333333333, 0.433333333333, 0.0> Vector3<-0.2, 0.4, 0.0> Vector3<-0.266666666667, 0.366666666667, 0.0> Vector3<-0.333333333333, 0.333333333333, 0.0> Vector3<-0.266666666667, 0.266666666667, 0.0> Vector3<-0.2, 0.2, 0.0> Vector3<-0.133333333333, 0.133333333333, 0.0> Vector3<-0.0666666666667, 0.0666666666667, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00696301460266 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 91 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.727845, 0.788088, 0.920961, 0.922085, 1.01687, 1.01845, 1.24334 elapsed time for k point: 0.77908706665 solve_kpoint (0,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 50 iterations. tefreqs:, 2, 0, 0.1, 0, 0.11547, 0.10214, 0.723854, 0.784332, 0.900771, 0.902155, 1.03144, 1.03948, 1.2036 elapsed time for k point: 0.546502113342 solve_kpoint (0,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0, 0.2, 0, 0.23094, 0.203735, 0.707761, 0.769484, 0.867508, 0.869257, 1.05383, 1.07964, 1.17834 elapsed time for k point: 0.290410041809 solve_kpoint (0,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 4, 0, 0.3, 0, 0.34641, 0.304067, 0.663675, 0.75048, 0.840899, 0.85049, 1.07273, 1.11526, 1.16655 elapsed time for k point: 0.285687923431 solve_kpoint (0,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 31 iterations. tefreqs:, 5, 0, 0.4, 0, 0.46188, 0.401691, 0.590457, 0.741009, 0.822518, 0.84569, 1.08497, 1.13738, 1.16665 elapsed time for k point: 0.351250886917 solve_kpoint (0,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 39 iterations. tefreqs:, 6, 0, 0.5, 0, 0.57735, 0.478396, 0.520318, 0.738393, 0.816173, 0.844859, 1.08909, 1.14451, 1.17202 elapsed time for k point: 0.437801837921 solve_kpoint (-0.0666667,0.466667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 30 iterations. tefreqs:, 7, -0.0666667, 0.466667, 0, 0.581187, 0.48205, 0.522761, 0.727295, 0.819868, 0.844497, 1.09131, 1.14544, 1.17197 elapsed time for k point: 0.33180809021 solve_kpoint (-0.133333,0.433333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 8, -0.133333, 0.433333, 0, 0.592546, 0.492796, 0.529981, 0.69937, 0.826669, 0.843482, 1.09673, 1.14811, 1.17183 elapsed time for k point: 0.370378017426 solve_kpoint (-0.2,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 9, -0.2, 0.4, 0, 0.61101, 0.510012, 0.541662, 0.661523, 0.832379, 0.841947, 1.10264, 1.15222, 1.1717 elapsed time for k point: 0.378375053406 solve_kpoint (-0.266667,0.366667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 35 iterations. tefreqs:, 10, -0.266667, 0.366667, 0, 0.635959, 0.532564, 0.557306, 0.617759, 0.836201, 0.840118, 1.10684, 1.15685, 1.1722 elapsed time for k point: 0.382694005966 solve_kpoint (-0.333333,0.333333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 72 iterations. tefreqs:, 11, -0.333333, 0.333333, 0, 0.666667, 0.553509, 0.57602, 0.576336, 0.838242, 0.838556, 1.10835, 1.15937, 1.17498 elapsed time for k point: 0.766877889633 solve_kpoint (-0.266667,0.266667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 101 iterations. tefreqs:, 12, -0.266667, 0.266667, 0, 0.533333, 0.461593, 0.620594, 0.628556, 0.836746, 0.840202, 1.10228, 1.15102, 1.16591 elapsed time for k point: 1.07543087006 solve_kpoint (-0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 25 iterations. tefreqs:, 13, -0.2, 0.2, 0, 0.4, 0.350141, 0.666671, 0.698454, 0.841979, 0.843343, 1.08599, 1.12874, 1.16367 elapsed time for k point: 0.272665977478 solve_kpoint (-0.133333,0.133333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 14, -0.133333, 0.133333, 0, 0.266667, 0.234979, 0.703081, 0.756416, 0.858378, 0.861716, 1.0625, 1.09087, 1.1734 elapsed time for k point: 0.263879060745 solve_kpoint (-0.0666667,0.0666667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 15, -0.0666667, 0.0666667, 0, 0.133333, 0.117907, 0.722467, 0.782825, 0.895483, 0.896999, 1.03533, 1.04486, 1.19885 elapsed time for k point: 0.290710926056 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 67 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.727845, 0.788088, 0.920961, 0.922085, 1.01687, 1.01845, 1.24334 .elapsed time for k point: 0.562619924545 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.553509348997 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 2 range: 0.520318359084 at Vector3<0.0, 0.5, 0.0> to 0.727844751545 at Vector3<0.0, 0.0, 0.0> Band 3 range: 0.576335859651 at Vector3<-0.333333333333, 0.333333333333, 0.0> to 0.788087893062 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.816173029367 at Vector3<0.0, 0.5, 0.0> to 0.920961143214 at Vector3<0.0, 0.0, 0.0> Band 5 range: 0.838556235961 at Vector3<-0.333333333333, 0.333333333333, 0.0> to 0.92208494259 at Vector3<0.0, 0.0, 0.0> Band 6 range: 1.01686566839 at Vector3<0.0, 0.0, 0.0> to 1.10835366734 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 7 range: 1.01845072531 at Vector3<0.0, 0.0, 0.0> to 1.15937022737 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 8 range: 1.16367190504 at Vector3<-0.2, 0.2, 0.0> to 1.24334118399 at Vector3<0.0, 0.0, 0.0> Gap from band 3 (0.788087893062) to band 4 (0.816173029367), 3.50131776109% Gap from band 5 (0.92208494259) to band 6 (1.01686566839), 9.77649716965% Gap from band 7 (1.15937022737) to band 8 (1.16367190504), 0.370348656678% total elapsed time for run: 7.39676499367 done test_honey_rods: 11.30s test_line_defect ======================== Initializing eigensolver data Computing 12 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 224 x 1. Solving for 6 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (0.866025, 0.5, 0) (6.06218, -3.5, 0) (0, 0, 1) Cell volume = 6.06218 Reciprocal lattice vectors (/ 2 pi): (0.57735, 1, -0) (0.0824786, -0.142857, 0) (-0, 0, 1) Geometric objects: cylinder, center = (0,3,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-3,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 3 and 9 object nodes (vs. 8 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 6 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.35, 0.0> Vector3<0.2, 0.7, 0.0> Vector3<0.3, 1.05, 0.0> Vector3<0.4, 1.4, 0.0> Vector3<0.5, 1.75, 0.0> elapsed time for initialization: 0.0491871833801 solve_kpoint (0,0,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1, tm band 2, tm band 3, tm band 4, tm band 5, tm band 6, tm band 7, tm band 8, tm band 9, tm band 10, tm band 11, tm band 12 Solving for bands 2 to 7... Finished solving for bands 2 to 7 after 16 iterations. Solving for bands 8 to 12... iteration 57: trace = 1.21158950990577 (2.50061e-07% change) Finished solving for bands 8 to 12 after 76 iterations. Finished k-point with 39.6667 mean iterations/band. tmfreqs:, 1, 0, 0, 0, 0, 0, 0.100888, 0.110544, 0.191438, 0.209077, 0.252769, 0.337337, 0.453613, 0.461172, 0.496485, 0.499488, 0.545123 elapsed time for k point: 6.5129699707 Fixing e-field (band 1) phase by 1 + -0i; max ampl. = 0 Fixing e-field (band 2) phase by -0.934778 + 0.355231i; max ampl. = 0.36443 Fixing e-field (band 3) phase by 0.41377 + -0.910381i; max ampl. = 0.363694 Fixing e-field (band 4) phase by -0.042412 + 0.9991i; max ampl. = 0.40619 Fixing e-field (band 5) phase by -0.829535 + -0.558455i; max ampl. = 0.458526 Fixing e-field (band 6) phase by 0.636619 + 0.771179i; max ampl. = 0.461015 Fixing e-field (band 7) phase by -0.696974 + 0.717096i; max ampl. = 0.87849 Fixing e-field (band 8) phase by -0.801423 + 0.598098i; max ampl. = 0.582082 Fixing e-field (band 9) phase by 0.502154 + -0.864778i; max ampl. = 0.503748 Fixing e-field (band 10) phase by -0.833535 + 0.552467i; max ampl. = 0.514872 Fixing e-field (band 11) phase by -0.701379 + 0.712788i; max ampl. = 0.525048 Fixing e-field (band 12) phase by -0.711256 + 0.702933i; max ampl. = 0.596428 Outputting fields to test_line_defect-e.k01.b01.z.tm.h5... Outputting fields to test_line_defect-e.k01.b02.z.tm.h5... Outputting fields to test_line_defect-e.k01.b03.z.tm.h5... Outputting fields to test_line_defect-e.k01.b04.z.tm.h5... Outputting fields to test_line_defect-e.k01.b05.z.tm.h5... Outputting fields to test_line_defect-e.k01.b06.z.tm.h5... Outputting fields to test_line_defect-e.k01.b07.z.tm.h5... Outputting fields to test_line_defect-e.k01.b08.z.tm.h5... Outputting fields to test_line_defect-e.k01.b09.z.tm.h5... Outputting fields to test_line_defect-e.k01.b10.z.tm.h5... Outputting fields to test_line_defect-e.k01.b11.z.tm.h5... Outputting fields to test_line_defect-e.k01.b12.z.tm.h5... solve_kpoint (0.1,0.35,0): Solving for bands 1 to 6... Finished solving for bands 1 to 6 after 8 iterations. Solving for bands 7 to 12... Finished solving for bands 7 to 12 after 37 iterations. Finished k-point with 22.5 mean iterations/band. tmfreqs:, 2, 0.1, 0.35, 0, 0.1, 0.0643286, 0.117273, 0.128193, 0.198551, 0.216266, 0.255606, 0.34632, 0.457251, 0.464418, 0.494572, 0.497876, 0.533413 elapsed time for k point: 3.62084197998 Fixing e-field (band 1) phase by -1 + 2.71659e-09i; max ampl. = 0.279221 Fixing e-field (band 2) phase by 0.0662249 + 0.997805i; max ampl. = 0.368961 Fixing e-field (band 3) phase by 1 + -3.0824e-07i; max ampl. = 0.357513 Fixing e-field (band 4) phase by -0.00791528 + -0.999969i; max ampl. = 0.410959 Fixing e-field (band 5) phase by -1 + 1.15878e-06i; max ampl. = 0.464942 Fixing e-field (band 6) phase by 0.00071696 + 1i; max ampl. = 0.463983 Fixing e-field (band 7) phase by 1 + 1.05437e-08i; max ampl. = 0.893105 Fixing e-field (band 8) phase by -1 + 4.80894e-06i; max ampl. = 0.585113 Fixing e-field (band 9) phase by -2.44703e-05 + 1i; max ampl. = 0.51118 Fixing e-field (band 10) phase by -1 + -8.06363e-05i; max ampl. = 0.50134 Fixing e-field (band 11) phase by 2.03297e-05 + 1i; max ampl. = 0.518018 Fixing e-field (band 12) phase by -0.000314773 + -1i; max ampl. = 0.377816 Outputting fields to test_line_defect-e.k02.b01.z.tm.h5... Outputting fields to test_line_defect-e.k02.b02.z.tm.h5... Outputting fields to test_line_defect-e.k02.b03.z.tm.h5... Outputting fields to test_line_defect-e.k02.b04.z.tm.h5... Outputting fields to test_line_defect-e.k02.b05.z.tm.h5... Outputting fields to test_line_defect-e.k02.b06.z.tm.h5... Outputting fields to test_line_defect-e.k02.b07.z.tm.h5... Outputting fields to test_line_defect-e.k02.b08.z.tm.h5... Outputting fields to test_line_defect-e.k02.b09.z.tm.h5... Outputting fields to test_line_defect-e.k02.b10.z.tm.h5... Outputting fields to test_line_defect-e.k02.b11.z.tm.h5... Outputting fields to test_line_defect-e.k02.b12.z.tm.h5... solve_kpoint (0.2,0.7,0): Solving for bands 1 to 6... Finished solving for bands 1 to 6 after 8 iterations. Solving for bands 7 to 12... Finished solving for bands 7 to 12 after 32 iterations. Finished k-point with 20 mean iterations/band. tmfreqs:, 3, 0.2, 0.7, 0, 0.2, 0.12511, 0.154647, 0.167476, 0.216994, 0.234024, 0.262757, 0.372785, 0.466507, 0.471319, 0.486474, 0.490761, 0.511423 elapsed time for k point: 3.17243385315 Fixing e-field (band 1) phase by 1 + -6.65677e-16i; max ampl. = 0.316626 Fixing e-field (band 2) phase by 1.43624e-11 + -1i; max ampl. = 0.383063 Fixing e-field (band 3) phase by 1 + -1.03251e-14i; max ampl. = 0.3761 Fixing e-field (band 4) phase by 8.70557e-10 + 1i; max ampl. = 0.424925 Fixing e-field (band 5) phase by 1 + 1.32521e-13i; max ampl. = 0.480327 Fixing e-field (band 6) phase by 4.77922e-10 + -1i; max ampl. = 0.472091 Fixing e-field (band 7) phase by 1 + -1.08091e-12i; max ampl. = 0.919529 Fixing e-field (band 8) phase by -1 + -1.65794e-11i; max ampl. = 0.593898 Fixing e-field (band 9) phase by -1.10263e-07 + -1i; max ampl. = 0.521242 Fixing e-field (band 10) phase by -1 + 3.84155e-10i; max ampl. = 0.454743 Fixing e-field (band 11) phase by -4.86281e-08 + -1i; max ampl. = 0.493615 Fixing e-field (band 12) phase by -1.98485e-06 + -1i; max ampl. = 0.473136 Outputting fields to test_line_defect-e.k03.b01.z.tm.h5... Outputting fields to test_line_defect-e.k03.b02.z.tm.h5... Outputting fields to test_line_defect-e.k03.b03.z.tm.h5... Outputting fields to test_line_defect-e.k03.b04.z.tm.h5... Outputting fields to test_line_defect-e.k03.b05.z.tm.h5... Outputting fields to test_line_defect-e.k03.b06.z.tm.h5... Outputting fields to test_line_defect-e.k03.b07.z.tm.h5... Outputting fields to test_line_defect-e.k03.b08.z.tm.h5... Outputting fields to test_line_defect-e.k03.b09.z.tm.h5... Outputting fields to test_line_defect-e.k03.b10.z.tm.h5... Outputting fields to test_line_defect-e.k03.b11.z.tm.h5... Outputting fields to test_line_defect-e.k03.b12.z.tm.h5... solve_kpoint (0.3,1.05,0): Solving for bands 1 to 6... Finished solving for bands 1 to 6 after 8 iterations. Solving for bands 7 to 12... iteration 47: trace = 1.306672808606034 (1.49553e-06% change) iteration 93: trace = 1.306671953790938 (5.76577e-10% change) Finished solving for bands 7 to 12 after 95 iterations. Finished k-point with 51.5 mean iterations/band. tmfreqs:, 4, 0.3, 1.05, 0, 0.3, 0.179731, 0.197126, 0.209614, 0.239781, 0.253491, 0.270127, 0.412201, 0.46839, 0.470281, 0.47669, 0.478853, 0.489567 elapsed time for k point: 8.92463898659 Fixing e-field (band 1) phase by 1 + -1.09836e-16i; max ampl. = 0.362092 Fixing e-field (band 2) phase by 1.44668e-12 + -1i; max ampl. = 0.407764 Fixing e-field (band 3) phase by -1 + -9.0973e-16i; max ampl. = 0.420136 Fixing e-field (band 4) phase by 7.75608e-12 + 1i; max ampl. = 0.446788 Fixing e-field (band 5) phase by 1 + 3.3037e-15i; max ampl. = 0.496332 Fixing e-field (band 6) phase by -1.24081e-11 + 1i; max ampl. = 0.481878 Fixing e-field (band 7) phase by 1 + 3.59872e-13i; max ampl. = 0.896831 Fixing e-field (band 8) phase by 7.179e-11 + -1i; max ampl. = 0.458802 Fixing e-field (band 9) phase by -1 + -2.56317e-11i; max ampl. = 0.495105 Fixing e-field (band 10) phase by 1 + -1.75874e-12i; max ampl. = 0.483552 Fixing e-field (band 11) phase by -3.74226e-11 + 1i; max ampl. = 0.523494 Fixing e-field (band 12) phase by -1 + -7.30658e-11i; max ampl. = 0.423458 Outputting fields to test_line_defect-e.k04.b01.z.tm.h5... Outputting fields to test_line_defect-e.k04.b02.z.tm.h5... Outputting fields to test_line_defect-e.k04.b03.z.tm.h5... Outputting fields to test_line_defect-e.k04.b04.z.tm.h5... Outputting fields to test_line_defect-e.k04.b05.z.tm.h5... Outputting fields to test_line_defect-e.k04.b06.z.tm.h5... Outputting fields to test_line_defect-e.k04.b07.z.tm.h5... Outputting fields to test_line_defect-e.k04.b08.z.tm.h5... Outputting fields to test_line_defect-e.k04.b09.z.tm.h5... Outputting fields to test_line_defect-e.k04.b10.z.tm.h5... Outputting fields to test_line_defect-e.k04.b11.z.tm.h5... Outputting fields to test_line_defect-e.k04.b12.z.tm.h5... solve_kpoint (0.4,1.4,0): Solving for bands 1 to 6... Finished solving for bands 1 to 6 after 9 iterations. Solving for bands 7 to 12... iteration 48: trace = 1.269582091147561 (1.73479e-07% change) Finished solving for bands 7 to 12 after 67 iterations. Finished k-point with 38 mean iterations/band. tmfreqs:, 5, 0.4, 1.4, 0, 0.4, 0.225148, 0.234786, 0.243351, 0.257936, 0.264707, 0.270821, 0.441523, 0.454532, 0.455044, 0.464121, 0.471551, 0.472447 elapsed time for k point: 6.28928399086 Fixing e-field (band 1) phase by 1 + -1.18438e-16i; max ampl. = 0.407996 Fixing e-field (band 2) phase by 8.20705e-12 + -1i; max ampl. = 0.441101 Fixing e-field (band 3) phase by 1 + 2.58458e-15i; max ampl. = 0.464954 Fixing e-field (band 4) phase by 7.60398e-12 + 1i; max ampl. = 0.46974 Fixing e-field (band 5) phase by 1 + 6.32791e-15i; max ampl. = 0.505749 Fixing e-field (band 6) phase by -1.43037e-11 + 1i; max ampl. = 0.483913 Fixing e-field (band 7) phase by 1 + 2.71837e-14i; max ampl. = 0.643734 Fixing e-field (band 8) phase by 5.93642e-12 + 1i; max ampl. = 0.465166 Fixing e-field (band 9) phase by 1 + -2.34459e-13i; max ampl. = 0.43823 Fixing e-field (band 10) phase by -3.91411e-14 + -1i; max ampl. = 0.518507 Fixing e-field (band 11) phase by -1 + -3.99059e-12i; max ampl. = 0.471405 Fixing e-field (band 12) phase by 1.63708e-13 + -1i; max ampl. = 0.443866 Outputting fields to test_line_defect-e.k05.b01.z.tm.h5... Outputting fields to test_line_defect-e.k05.b02.z.tm.h5... Outputting fields to test_line_defect-e.k05.b03.z.tm.h5... Outputting fields to test_line_defect-e.k05.b04.z.tm.h5... Outputting fields to test_line_defect-e.k05.b05.z.tm.h5... Outputting fields to test_line_defect-e.k05.b06.z.tm.h5... Outputting fields to test_line_defect-e.k05.b07.z.tm.h5... Outputting fields to test_line_defect-e.k05.b08.z.tm.h5... Outputting fields to test_line_defect-e.k05.b09.z.tm.h5... Outputting fields to test_line_defect-e.k05.b10.z.tm.h5... Outputting fields to test_line_defect-e.k05.b11.z.tm.h5... Outputting fields to test_line_defect-e.k05.b12.z.tm.h5... solve_kpoint (0.5,1.75,0): Solving for bands 1 to 6... Finished solving for bands 1 to 6 after 9 iterations. Solving for bands 7 to 12... Finished solving for bands 7 to 12 after 15 iterations. Finished k-point with 12 mean iterations/band. tmfreqs:, 6, 0.5, 1.75, 0, 0.5, 0.25635, 0.256978, 0.258342, 0.259571, 0.260868, 0.261719, 0.442498, 0.448263, 0.451495, 0.456403, 0.462907, 0.46569 elapsed time for k point: 1.92681694031 Fixing e-field (band 1) phase by 1 + -2.83004e-16i; max ampl. = 0.422882 Fixing e-field (band 2) phase by 2.64883e-12 + -1i; max ampl. = 0.466091 Fixing e-field (band 3) phase by -1 + 1.50972e-15i; max ampl. = 0.462198 Fixing e-field (band 4) phase by 1.71526e-11 + -1i; max ampl. = 0.471227 Fixing e-field (band 5) phase by -1 + 2.17573e-14i; max ampl. = 0.472309 Fixing e-field (band 6) phase by -2.67555e-11 + -1i; max ampl. = 0.476607 Fixing e-field (band 7) phase by 1 + -7.43436e-16i; max ampl. = 0.600013 Fixing e-field (band 8) phase by -4.02406e-13 + -1i; max ampl. = 0.468917 Fixing e-field (band 9) phase by 1 + 2.35869e-15i; max ampl. = 0.508553 Fixing e-field (band 10) phase by 1.69925e-13 + 1i; max ampl. = 0.472551 Fixing e-field (band 11) phase by 1 + 1.38605e-13i; max ampl. = 0.507635 Fixing e-field (band 12) phase by 1.92807e-12 + 1i; max ampl. = 0.465525 ..Outputting fields to test_line_defect-e.k06.b01.z.tm.h5... Outputting fields to test_line_defect-e.k06.b02.z.tm.h5... Outputting fields to test_line_defect-e.k06.b03.z.tm.h5... Outputting fields to test_line_defect-e.k06.b04.z.tm.h5... Outputting fields to test_line_defect-e.k06.b05.z.tm.h5... Outputting fields to test_line_defect-e.k06.b06.z.tm.h5... Outputting fields to test_line_defect-e.k06.b07.z.tm.h5... Outputting fields to test_line_defect-e.k06.b08.z.tm.h5... Outputting fields to test_line_defect-e.k06.b09.z.tm.h5... Outputting fields to test_line_defect-e.k06.b10.z.tm.h5... Outputting fields to test_line_defect-e.k06.b11.z.tm.h5... Outputting fields to test_line_defect-e.k06.b12.z.tm.h5... Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.256350105354 at Vector3<0.5, 1.75, 0.0> Band 2 range: 0.100888010145 at Vector3<0.0, 0.0, 0.0> to 0.256977671293 at Vector3<0.5, 1.75, 0.0> Band 3 range: 0.110543746169 at Vector3<0.0, 0.0, 0.0> to 0.258341879918 at Vector3<0.5, 1.75, 0.0> Band 4 range: 0.191437580989 at Vector3<0.0, 0.0, 0.0> to 0.25957071279 at Vector3<0.5, 1.75, 0.0> Band 5 range: 0.209077414374 at Vector3<0.0, 0.0, 0.0> to 0.264706957428 at Vector3<0.4, 1.4, 0.0> Band 6 range: 0.252768994808 at Vector3<0.0, 0.0, 0.0> to 0.270821263668 at Vector3<0.4, 1.4, 0.0> Band 7 range: 0.337337103113 at Vector3<0.0, 0.0, 0.0> to 0.442497664917 at Vector3<0.5, 1.75, 0.0> Band 8 range: 0.448262776554 at Vector3<0.5, 1.75, 0.0> to 0.468390327176 at Vector3<0.3, 1.05, 0.0> Band 9 range: 0.451495402953 at Vector3<0.5, 1.75, 0.0> to 0.471319483623 at Vector3<0.2, 0.7, 0.0> Band 10 range: 0.456402536778 at Vector3<0.5, 1.75, 0.0> to 0.496485088693 at Vector3<0.0, 0.0, 0.0> Band 11 range: 0.462906658043 at Vector3<0.5, 1.75, 0.0> to 0.499487769383 at Vector3<0.0, 0.0, 0.0> Band 12 range: 0.465690463972 at Vector3<0.5, 1.75, 0.0> to 0.545122984666 at Vector3<0.0, 0.0, 0.0> Gap from band 6 (0.270821263668) to band 7 (0.337337103113), 21.8745126527% Gap from band 7 (0.442497664917) to band 8 (0.448262776554), 1.2944247114% total elapsed time for run: 31.2091162205 done test_line_defect: 31.24s test_list_split ======================== test_list_split: 0.00s test_load_and_save_eigenvectors ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00611805915833 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.453526973724 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.31076693535 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.301362991333 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.278954029083 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.322974920273 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.452685832977 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.373366117477 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.319044828415 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.280287981033 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.264885902405 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.265007019043 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.212295055389 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.245321989059 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.339736938477 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.387279033661 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.805036067963 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 6.62257122993 done Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00619697570801 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.474596977234 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.36721301079 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.301032066345 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.279707193375 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.321822881699 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.453680992126 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.371462106705 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.317571878433 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.270745038986 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.261983156204 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.25935292244 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.20885014534 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.243918895721 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.335602998734 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.393000125885 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 ./usr/lib/python2.7/dist-packages/scipy/optimize/_minimize.py:763: RuntimeWarning: Method 'bounded' does not support relative tolerance in x; defaulting to absolute tolerance. "defaulting to absolute tolerance.", RuntimeWarning) elapsed time for k point: 0.818265914917 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 6.68906497955 done test_load_and_save_eigenvectors: 13.32s test_maximize_first_tm_gap ======================== Initializing eigensolver data Computing 2 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 2 bands at a time. Creating Maxwell data... Mesh size is 7. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.252786, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00408506393433 solve_kpoint (0,0,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1, tm band 2 Solving for bands 2 to 2... Finished solving for bands 2 to 2 after 16 iterations. tmfreqs:, 1, 0, 0, 0, 0, 0, 0.457257 elapsed time for k point: 0.0203130245209 solve_kpoint (0.1,0,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 30 iterations. tmfreqs:, 2, 0.1, 0, 0, 0.1, 0.0554835, 0.445338 elapsed time for k point: 0.0737931728363 solve_kpoint (0.2,0,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 9 iterations. tmfreqs:, 3, 0.2, 0, 0, 0.2, 0.108796, 0.4196 elapsed time for k point: 0.0236248970032 solve_kpoint (0.3,0,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 9 iterations. tmfreqs:, 4, 0.3, 0, 0, 0.3, 0.157121, 0.39009 elapsed time for k point: 0.0233819484711 solve_kpoint (0.4,0,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 8 iterations. tmfreqs:, 5, 0.4, 0, 0, 0.4, 0.195165, 0.36342 elapsed time for k point: 0.0207760334015 solve_kpoint (0.5,0,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 8 iterations. tmfreqs:, 6, 0.5, 0, 0, 0.5, 0.211216, 0.351201 elapsed time for k point: 0.0207891464233 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 8 iterations. tmfreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.214395, 0.356057 elapsed time for k point: 0.020800113678 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 8 iterations. tmfreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.223034, 0.36912 elapsed time for k point: 0.0208969116211 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 8 iterations. tmfreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.234535, 0.38618 elapsed time for k point: 0.0203728675842 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 9 iterations. tmfreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.244797, 0.40104 elapsed time for k point: 0.0227289199829 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 9 iterations. tmfreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.249029, 0.407058 elapsed time for k point: 0.0228400230408 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 17 iterations. tmfreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.239439, 0.402656 elapsed time for k point: 0.0408999919891 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 9 iterations. tmfreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.206339, 0.402028 elapsed time for k point: 0.0226349830627 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 9 iterations. tmfreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.149555, 0.416611 elapsed time for k point: 0.0231881141663 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 10 iterations. tmfreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.0779669, 0.441244 elapsed time for k point: 0.0259368419647 solve_kpoint (0,0,0): Solving for bands 2 to 2... Finished solving for bands 2 to 2 after 12 iterations. tmfreqs:, 16, 0, 0, 0, 0, 0, 0.457257 elapsed time for k point: 0.0150520801544 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.249029499922 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.351200835305 at Vector3<0.5, 0.0, 0.0> to 0.45725652119 at Vector3<0.0, 0.0, 0.0> Gap from band 1 (0.249029499922) to band 2 (0.351200835305), 34.0440425572% total elapsed time for run: 0.425071954727 done Initializing eigensolver data Computing 2 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 2 bands at a time. Creating Maxwell data... Mesh size is 7. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.347214, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00507497787476 solve_kpoint (0,0,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1, tm band 2 Solving for bands 2 to 2... Finished solving for bands 2 to 2 after 17 iterations. tmfreqs:, 1, 0, 0, 0, 0, 0, 0.364215 elapsed time for k point: 0.0207450389862 solve_kpoint (0.1,0,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 27 iterations. tmfreqs:, 2, 0.1, 0, 0, 0.1, 0.0438278, 0.354242 elapsed time for k point: 0.0650629997253 solve_kpoint (0.2,0,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 9 iterations. tmfreqs:, 3, 0.2, 0, 0, 0.2, 0.086595, 0.330853 elapsed time for k point: 0.0233559608459 solve_kpoint (0.3,0,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 9 iterations. tmfreqs:, 4, 0.3, 0, 0, 0.3, 0.126861, 0.302301 elapsed time for k point: 0.023243188858 solve_kpoint (0.4,0,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 8 iterations. tmfreqs:, 5, 0.4, 0, 0, 0.4, 0.161288, 0.274456 elapsed time for k point: 0.0205290317535 solve_kpoint (0.5,0,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 8 iterations. tmfreqs:, 6, 0.5, 0, 0, 0.5, 0.177897, 0.259996 elapsed time for k point: 0.0208320617676 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 8 iterations. tmfreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.18095, 0.263821 elapsed time for k point: 0.0209510326385 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 8 iterations. tmfreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.189456, 0.274239 elapsed time for k point: 0.0207471847534 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 8 iterations. tmfreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.201452, 0.288223 elapsed time for k point: 0.0206520557404 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 9 iterations. tmfreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.213244, 0.300912 elapsed time for k point: 0.02312707901 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 9 iterations. tmfreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.218623, 0.306246 elapsed time for k point: 0.0224637985229 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 21 iterations. tmfreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.206544, 0.306507 elapsed time for k point: 0.0520670413971 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 9 iterations. tmfreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.171233, 0.314617 elapsed time for k point: 0.0237741470337 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 9 iterations. tmfreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.120346, 0.332539 elapsed time for k point: 0.0239069461823 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 9 iterations. tmfreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.0617389, 0.353456 elapsed time for k point: 0.0235238075256 solve_kpoint (0,0,0): Solving for bands 2 to 2... Finished solving for bands 2 to 2 after 13 iterations. tmfreqs:, 16, 0, 0, 0, 0, 0, 0.364216 elapsed time for k point: 0.015967130661 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.218622569105 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.259996144375 at Vector3<0.5, 0.0, 0.0> to 0.364215520346 at Vector3<0.0, 0.0, 0.0> Gap from band 1 (0.218622569105) to band 2 (0.259996144375), 17.2887411647% total elapsed time for run: 0.428970098495 done Initializing eigensolver data Computing 2 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 2 bands at a time. Creating Maxwell data... Mesh size is 7. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.194427, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00398397445679 solve_kpoint (0,0,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1, tm band 2 Solving for bands 2 to 2... Finished solving for bands 2 to 2 after 20 iterations. tmfreqs:, 1, 0, 0, 0, 0, 0, 0.546124 elapsed time for k point: 0.0245878696442 solve_kpoint (0.1,0,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 16 iterations. tmfreqs:, 2, 0.1, 0, 0, 0.1, 0.0654224, 0.524701 elapsed time for k point: 0.041267156601 solve_kpoint (0.2,0,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 10 iterations. tmfreqs:, 3, 0.2, 0, 0, 0.2, 0.128149, 0.494734 elapsed time for k point: 0.0268149375916 solve_kpoint (0.3,0,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 9 iterations. tmfreqs:, 4, 0.3, 0, 0, 0.3, 0.184564, 0.463719 elapsed time for k point: 0.0234730243683 solve_kpoint (0.4,0,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 8 iterations. tmfreqs:, 5, 0.4, 0, 0, 0.4, 0.228088, 0.436373 elapsed time for k point: 0.0209319591522 solve_kpoint (0.5,0,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 8 iterations. tmfreqs:, 6, 0.5, 0, 0, 0.5, 0.245908, 0.424115 elapsed time for k point: 0.021064043045 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 8 iterations. tmfreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.249363, 0.43085 elapsed time for k point: 0.0209019184113 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 8 iterations. tmfreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.258652, 0.449323 elapsed time for k point: 0.0210211277008 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 8 iterations. tmfreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.270746, 0.474454 elapsed time for k point: 0.0211110115051 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 9 iterations. tmfreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.281204, 0.497688 elapsed time for k point: 0.0235800743103 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 9 iterations. tmfreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.285404, 0.507621 elapsed time for k point: 0.0235538482666 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 17 iterations. tmfreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.275795, 0.495436 elapsed time for k point: 0.042503118515 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 9 iterations. tmfreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.240471, 0.48197 elapsed time for k point: 0.0232079029083 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 10 iterations. tmfreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.175771, 0.489863 elapsed time for k point: 0.0258929729462 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 11 iterations. tmfreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.0919053, 0.51638 elapsed time for k point: 0.0282230377197 solve_kpoint (0,0,0): Solving for bands 2 to 2... Finished solving for bands 2 to 2 after 16 iterations. tmfreqs:, 16, 0, 0, 0, 0, 0, 0.546124 elapsed time for k point: 0.0198550224304 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.285403810579 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.424115051619 at Vector3<0.5, 0.0, 0.0> to 0.546124486861 at Vector3<0.0, 0.0, 0.0> Gap from band 1 (0.285403810579) to band 2 (0.424115051619), 39.1000855456% total elapsed time for run: 0.414982795715 done Initializing eigensolver data Computing 2 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 2 bands at a time. Creating Maxwell data... Mesh size is 7. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.161094, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00417995452881 solve_kpoint (0,0,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1, tm band 2 Solving for bands 2 to 2... Finished solving for bands 2 to 2 after 14 iterations. tmfreqs:, 1, 0, 0, 0, 0, 0, 0.550087 elapsed time for k point: 0.0172619819641 solve_kpoint (0.1,0,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 10 iterations. tmfreqs:, 2, 0.1, 0, 0, 0.1, 0.0721945, 0.543799 elapsed time for k point: 0.0256688594818 solve_kpoint (0.2,0,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 10 iterations. tmfreqs:, 3, 0.2, 0, 0, 0.2, 0.141724, 0.526188 elapsed time for k point: 0.0256278514862 solve_kpoint (0.3,0,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 10 iterations. tmfreqs:, 4, 0.3, 0, 0, 0.3, 0.204809, 0.500698 elapsed time for k point: 0.0252990722656 solve_kpoint (0.4,0,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 9 iterations. tmfreqs:, 5, 0.4, 0, 0, 0.4, 0.254113, 0.474279 elapsed time for k point: 0.0228791236877 solve_kpoint (0.5,0,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 8 iterations. tmfreqs:, 6, 0.5, 0, 0, 0.5, 0.274582, 0.461512 elapsed time for k point: 0.020024061203 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 8 iterations. tmfreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.278369, 0.469808 elapsed time for k point: 0.0202529430389 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 8 iterations. tmfreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.288519, 0.493208 elapsed time for k point: 0.0202569961548 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 8 iterations. tmfreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.301662, 0.52732 elapsed time for k point: 0.020409822464 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 10 iterations. tmfreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.312941, 0.563571 elapsed time for k point: 0.025671005249 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 10 iterations. tmfreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.317444, 0.582278 elapsed time for k point: 0.0252211093903 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 17 iterations. tmfreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.307036, 0.555161 elapsed time for k point: 0.0415019989014 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 9 iterations. tmfreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.267668, 0.5254 elapsed time for k point: 0.0227320194244 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 10 iterations. tmfreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.194886, 0.523918 elapsed time for k point: 0.0253620147705 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 10 iterations. tmfreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.101494, 0.539572 elapsed time for k point: 0.0257260799408 solve_kpoint (0,0,0): Solving for bands 2 to 2... Finished solving for bands 2 to 2 after 12 iterations. tmfreqs:, 16, 0, 0, 0, 0, 0, 0.550087 .elapsed time for k point: 0.0149719715118 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.317444122972 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.4615121899 at Vector3<0.5, 0.0, 0.0> to 0.582277810582 at Vector3<0.5, 0.5, 0.0> Gap from band 1 (0.317444122972) to band 2 (0.4615121899), 36.9900248696% total elapsed time for run: 0.385974884033 done test_maximize_first_tm_gap: 1.66s test_multiply_bloch_in_map_data ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00630784034729 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.469568014145 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.37219309807 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.301544904709 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.277204990387 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.325194120407 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.461936950684 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.384584903717 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.326923847198 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.279123067856 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.267207860947 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.262359142303 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.209143877029 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.241845846176 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.333760976791 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.398198127747 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.832355976105 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 6.75368714333 done Fixing e-field (band 8) phase by -2.58685e-07 + -1i; max ampl. = 1.10099 Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00654315948486 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.472793102264 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.37520599365 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.304590940475 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.278721094131 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.325164079666 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.459110021591 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.38213801384 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.326063156128 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.281685113907 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.269968986511 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.2835688591 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.21258187294 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.249365091324 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.341448068619 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.402822971344 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.860458135605 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 6.83625602722 done Fixing e-field (band 8) phase by -2.58685e-07 + -1i; max ampl. = 1.10099 .test_multiply_bloch_in_map_data: 13.82s test_multiply_bloch_phase ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00634813308716 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.476686954498 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.3777821064 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.303732156754 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.281023025513 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.326096057892 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.46476817131 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.384014844894 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.338181018829 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.286842107773 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.269779920578 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.269675970078 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.212696075439 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.245396852493 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.335978031158 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.400435209274 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.831013917923 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 6.81461596489 done Fixing e-field (band 8) phase by -2.58685e-07 + -1i; max ampl. = 1.10099 .test_multiply_bloch_phase: 6.83s test_output_charge_density ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00630021095276 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.467458963394 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.37746405602 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.307283163071 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.28572177887 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.333806991577 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.468215942383 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.381696939468 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.328146934509 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.281540870667 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.274189949036 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.269290924072 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.212302923203 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.250858068466 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.340749025345 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.398447036743 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.841482162476 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 6.82907295227 done Fixing e-field (band 8) phase by -2.58685e-07 + -1i; max ampl. = 1.10099 .Outputting complex scalar field to test_output_charge_density-C.k16.b08.te.h5... test_output_charge_density: 6.85s test_output_dpwr_in_objects ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00638914108276 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.474189043045 D-energy-components:, 1, 1, 0, 0, 0 dpwr:, 1, 0.0, 0.0 D-energy-components:, 1, 2, 0.500003, 0.499997, 0 dpwr:, 2, 0.55270923201, 0.856743500004 Outputting fields to test_output_dpwr_in_objects-d.k01.b02.te.h5... D-energy-components:, 1, 3, 0.455928, 0.544072, 0 dpwr:, 3, 0.773226559307, 0.528826055797 D-energy-components:, 1, 4, 0.544076, 0.455924, 0 dpwr:, 4, 0.773229883948, 0.528807965491 D-energy-components:, 1, 5, 0.5, 0.5, 0 dpwr:, 5, 0.922996519585, 0.0891001079825 D-energy-components:, 1, 6, 0.125495, 0.874505, 0 dpwr:, 6, 1.00017111769, 0.40124649302 D-energy-components:, 1, 7, 0.874503, 0.125497, 0 dpwr:, 7, 1.00017200323, 0.401251991055 D-energy-components:, 1, 8, 0.499992, 0.500008, 0 dpwr:, 8, 1.09282093175, 0.287205668256 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.39125609398 D-energy-components:, 2, 1, 0.031114, 0.968886, 0 dpwr:, 1, 0.089733226053, 0.0460316674094 D-energy-components:, 2, 2, 0.488088, 0.511912, 0 dpwr:, 2, 0.551137686974, 0.844554241847 D-energy-components:, 2, 3, 0.219526, 0.780474, 0 dpwr:, 3, 0.761599735559, 0.44273944445 D-energy-components:, 2, 4, 0.779994, 0.220006, 0 dpwr:, 4, 0.774682184615, 0.536749122895 D-energy-components:, 2, 5, 0.333449, 0.666551, 0 dpwr:, 5, 0.907198708641, 0.312018151458 D-energy-components:, 2, 6, 0.881419, 0.118581, 0 dpwr:, 6, 1.00187795294, 0.389133380378 D-energy-components:, 2, 7, 0.392233, 0.607767, 0 dpwr:, 7, 1.0035701587, 0.277620595933 D-energy-components:, 2, 8, 0.507954, 0.492046, 0 dpwr:, 8, 1.10209065116, 0.667649197634 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.306166887283 D-energy-components:, 3, 1, 0.0363561, 0.963644, 0 dpwr:, 1, 0.178692004464, 0.0544220726491 D-energy-components:, 3, 2, 0.446363, 0.553637, 0 dpwr:, 2, 0.544895880278, 0.794273793676 D-energy-components:, 3, 3, 0.23103, 0.76897, 0 dpwr:, 3, 0.728533588468, 0.300771741151 D-energy-components:, 3, 4, 0.758854, 0.241146, 0 dpwr:, 4, 0.778527998755, 0.558660574036 D-energy-components:, 3, 5, 0.240477, 0.759523, 0 dpwr:, 5, 0.880243545608, 0.594165535364 D-energy-components:, 3, 6, 0.863785, 0.136215, 0 dpwr:, 6, 1.00698704194, 0.35472339077 D-energy-components:, 3, 7, 0.585239, 0.414761, 0 dpwr:, 7, 1.01696145336, 0.213224458514 D-energy-components:, 3, 8, 0.535346, 0.464654, 0 dpwr:, 8, 1.10027422003, 0.623265499249 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.28745007515 D-energy-components:, 4, 1, 0.0468976, 0.953102, 0 dpwr:, 1, 0.265797606716, 0.0718902112932 D-energy-components:, 4, 2, 0.35602, 0.64398, 0 dpwr:, 2, 0.52817558089, 0.659679514896 D-energy-components:, 4, 3, 0.27068, 0.72932, 0 dpwr:, 3, 0.685449168526, 0.300542125303 D-energy-components:, 4, 4, 0.732284, 0.267716, 0 dpwr:, 4, 0.783377431812, 0.588066306618 D-energy-components:, 4, 5, 0.261431, 0.738569, 0 dpwr:, 5, 0.860714451483, 0.729558853134 D-energy-components:, 4, 6, 0.829353, 0.170647, 0 dpwr:, 6, 1.01515203043, 0.30554099773 D-energy-components:, 4, 7, 0.603026, 0.396974, 0 dpwr:, 7, 1.03843147349, 0.246738943319 D-energy-components:, 4, 8, 0.592482, 0.407518, 0 dpwr:, 8, 1.09663921497, 0.539665077017 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.329814910889 D-energy-components:, 5, 1, 0.0662302, 0.93377, 0 dpwr:, 1, 0.348955949925, 0.103845244713 D-energy-components:, 5, 2, 0.226367, 0.773633, 0 dpwr:, 2, 0.490738447618, 0.435673954414 D-energy-components:, 5, 3, 0.351613, 0.648387, 0 dpwr:, 3, 0.652797447881, 0.448142512348 D-energy-components:, 5, 4, 0.710454, 0.289546, 0 dpwr:, 4, 0.787381631843, 0.613901176674 D-energy-components:, 5, 5, 0.295332, 0.704668, 0 dpwr:, 5, 0.849999314694, 0.769933890837 D-energy-components:, 5, 6, 0.77736, 0.22264, 0 dpwr:, 6, 1.02442946088, 0.257891195608 D-energy-components:, 5, 7, 0.546257, 0.453743, 0 dpwr:, 7, 1.06440766663, 0.332213139916 D-energy-components:, 5, 8, 0.681176, 0.318824, 0 dpwr:, 8, 1.09120806212, 0.432931740473 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.468206882477 D-energy-components:, 6, 1, 0.0773009, 0.922699, 0 dpwr:, 1, 0.412790671266, 0.0860399780368 D-energy-components:, 6, 2, 0.165167, 0.834833, 0 dpwr:, 2, 0.441588449723, 0.35844848963 D-energy-components:, 6, 3, 0.391615, 0.608385, 0 dpwr:, 3, 0.641997736545, 0.532847316057 D-energy-components:, 6, 4, 0.702039, 0.297961, 0 dpwr:, 4, 0.788932989548, 0.624270449588 D-energy-components:, 6, 5, 0.308697, 0.691303, 0 dpwr:, 5, 0.846587869582, 0.777126317952 D-energy-components:, 6, 6, 0.742735, 0.257265, 0 dpwr:, 6, 1.02915970506, 0.236813593014 D-energy-components:, 6, 7, 0.350801, 0.649199, 0 dpwr:, 7, 1.08607293237, 0.578242860208 D-energy-components:, 6, 8, 0.737396, 0.262604, 0 dpwr:, 8, 1.08786896351, 0.379508210567 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.38551402092 D-energy-components:, 7, 1, 0.12807, 0.87193, 0 dpwr:, 1, 0.423741461324, 0.0840529271046 D-energy-components:, 7, 2, 0.190236, 0.809764, 0 dpwr:, 2, 0.44578070371, 0.374902156438 D-energy-components:, 7, 3, 0.394034, 0.605966, 0 dpwr:, 3, 0.638230267338, 0.50822709514 D-energy-components:, 7, 4, 0.691881, 0.308119, 0 dpwr:, 4, 0.793146886182, 0.625150305316 D-energy-components:, 7, 5, 0.335703, 0.664297, 0 dpwr:, 5, 0.842943492239, 0.735577564469 D-energy-components:, 7, 6, 0.716117, 0.283883, 0 dpwr:, 6, 0.986523160918, 0.186978596967 D-energy-components:, 7, 7, 0.592896, 0.407104, 0 dpwr:, 7, 1.05017558172, 0.407776406607 D-energy-components:, 7, 8, 0.507261, 0.492739, 0 dpwr:, 8, 1.10383430973, 0.640481683228 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.329694032669 D-energy-components:, 8, 1, 0.253956, 0.746044, 0 dpwr:, 1, 0.454781272515, 0.0802008373372 D-energy-components:, 8, 2, 0.258536, 0.741464, 0 dpwr:, 2, 0.457433976858, 0.42543224668 D-energy-components:, 8, 3, 0.39346, 0.60654, 0 dpwr:, 3, 0.627898416348, 0.438064799688 D-energy-components:, 8, 4, 0.668133, 0.331867, 0 dpwr:, 4, 0.805254151809, 0.623009425551 D-energy-components:, 8, 5, 0.454908, 0.545092, 0 dpwr:, 5, 0.826100668242, 0.537301542233 D-energy-components:, 8, 6, 0.562281, 0.437719, 0 dpwr:, 6, 0.927944859792, 0.352663649847 D-energy-components:, 8, 7, 0.614808, 0.385192, 0 dpwr:, 7, 1.00456285223, 0.420738993786 D-energy-components:, 8, 8, 0.497393, 0.502607, 0 dpwr:, 8, 1.10879255432, 0.727971767229 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.281759023666 D-energy-components:, 9, 1, 0.353246, 0.646754, 0 dpwr:, 1, 0.473766595936, 0.512582772213 D-energy-components:, 9, 2, 0.406264, 0.593736, 0 dpwr:, 2, 0.501278842947, 0.0794647802808 D-energy-components:, 9, 3, 0.37582, 0.62418, 0 dpwr:, 3, 0.613580175747, 0.328811623704 D-energy-components:, 9, 4, 0.604014, 0.395986, 0 dpwr:, 4, 0.781466869324, 0.223273226444 D-energy-components:, 9, 5, 0.642263, 0.357737, 0 dpwr:, 5, 0.82418144435, 0.609569504797 D-energy-components:, 9, 6, 0.357719, 0.642281, 0 dpwr:, 6, 0.894949213966, 0.654028638341 D-energy-components:, 9, 7, 0.617321, 0.382679, 0 dpwr:, 7, 0.959051157213, 0.461890586076 D-energy-components:, 9, 8, 0.497742, 0.502258, 0 dpwr:, 8, 1.11069781522, 0.761549817162 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.269559144974 D-energy-components:, 10, 1, 0.450645, 0.549355, 0 dpwr:, 1, 0.48964920033, 0.628546937161 D-energy-components:, 10, 2, 0.55965, 0.44035, 0 dpwr:, 2, 0.55604513436, 0.0903499596303 D-energy-components:, 10, 3, 0.336621, 0.663379, 0 dpwr:, 3, 0.599569940521, 0.195978061829 D-energy-components:, 10, 4, 0.593365, 0.406635, 0 dpwr:, 4, 0.719610675514, 0.0828904269154 D-energy-components:, 10, 5, 0.620299, 0.379701, 0 dpwr:, 5, 0.849246796726, 0.577797196956 D-energy-components:, 10, 6, 0.283543, 0.716457, 0 dpwr:, 6, 0.884337377178, 0.777298614918 D-energy-components:, 10, 7, 0.618314, 0.381686, 0 dpwr:, 7, 0.917167505771, 0.515986302512 D-energy-components:, 10, 8, 0.499316, 0.500684, 0 dpwr:, 8, 1.11162105754, 0.775661103268 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.268525838852 D-energy-components:, 11, 1, 0.500002, 0.499998, 0 dpwr:, 1, 0.496835864745, 0.698636026235 D-energy-components:, 11, 2, 0.490408, 0.509592, 0 dpwr:, 2, 0.593140514116, 0.119658617868 D-energy-components:, 11, 3, 0.509591, 0.490409, 0 dpwr:, 3, 0.593153586312, 0.119542183082 D-energy-components:, 11, 4, 0.499999, 0.500001, 0 dpwr:, 4, 0.679169013076, 0.0266333797198 D-energy-components:, 11, 5, 0.5, 0.5, 0 dpwr:, 5, 0.87868381416, 0.299749762284 D-energy-components:, 11, 6, 0.362, 0.638, 0 dpwr:, 6, 0.881977091666, 0.802356842474 D-energy-components:, 11, 7, 0.638005, 0.361995, 0 dpwr:, 7, 0.881981813442, 0.802381635726 D-energy-components:, 11, 8, 0.499999, 0.500001, 0 dpwr:, 8, 1.11191737076, 0.779738140871 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.214555978775 D-energy-components:, 12, 1, 0.500001, 0.499999, 0 dpwr:, 1, 0.470986895443, 0.41845731018 D-energy-components:, 12, 2, 0.5, 0.5, 0 dpwr:, 2, 0.546002648834, 0.365895885714 D-energy-components:, 12, 3, 0.5, 0.5, 0 dpwr:, 3, 0.606732333636, 0.125606152044 D-energy-components:, 12, 4, 0.499999, 0.500001, 0 dpwr:, 4, 0.743602191048, 0.112952315443 D-energy-components:, 12, 5, 0.499995, 0.500005, 0 dpwr:, 5, 0.839222595132, 0.57385055981 D-energy-components:, 12, 6, 0.500004, 0.499996, 0 dpwr:, 6, 0.882253939189, 0.79040207205 D-energy-components:, 12, 7, 0.500006, 0.499994, 0 dpwr:, 7, 0.936970096199, 0.481849895504 D-energy-components:, 12, 8, 0.499999, 0.500001, 0 dpwr:, 8, 1.1112079238, 0.770610082842 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.250759840012 D-energy-components:, 13, 1, 0.499999, 0.500001, 0 dpwr:, 1, 0.372434676913, 0.122374083381 D-energy-components:, 13, 2, 0.500002, 0.499998, 0 dpwr:, 2, 0.536186288439, 0.676932734099 D-energy-components:, 13, 3, 0.5, 0.5, 0 dpwr:, 3, 0.644572317821, 0.150556445009 D-energy-components:, 13, 4, 0.499998, 0.500002, 0 dpwr:, 4, 0.809689155168, 0.556241164988 D-energy-components:, 13, 5, 0.499996, 0.500004, 0 dpwr:, 5, 0.825804393421, 0.246435002455 D-energy-components:, 13, 6, 0.500008, 0.499992, 0 dpwr:, 6, 0.883642304216, 0.747114172854 D-energy-components:, 13, 7, 0.5, 0.5, 0 dpwr:, 7, 1.01020321733, 0.380746988678 D-energy-components:, 13, 8, 0.5, 0.5, 0 dpwr:, 8, 1.10725147199, 0.723618303234 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.342623949051 D-energy-components:, 14, 1, 0.499999, 0.500001, 0 dpwr:, 1, 0.252088096229, 0.0653722298874 D-energy-components:, 14, 2, 0.500003, 0.499997, 0 dpwr:, 2, 0.542887135721, 0.776089779269 D-energy-components:, 14, 3, 0.500001, 0.499999, 0 dpwr:, 3, 0.698081067031, 0.220962166985 D-energy-components:, 14, 4, 0.5, 0.5, 0 dpwr:, 4, 0.789371358052, 0.554918109128 D-energy-components:, 14, 5, 0.499969, 0.500031, 0 dpwr:, 5, 0.888482610264, 0.640566079856 D-energy-components:, 14, 6, 0.500033, 0.499967, 0 dpwr:, 6, 0.897857870041, 0.316226295357 D-energy-components:, 14, 7, 0.499994, 0.500006, 0 dpwr:, 7, 1.07884134083, 0.465228561899 D-energy-components:, 14, 8, 0.500005, 0.499995, 0 dpwr:, 8, 1.09038564588, 0.546286148842 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.401117086411 D-energy-components:, 15, 1, 0.499999, 0.500001, 0 dpwr:, 1, 0.126841069035, 0.0479527977041 D-energy-components:, 15, 2, 0.500003, 0.499997, 0 dpwr:, 2, 0.54990750729, 0.835061478072 D-energy-components:, 15, 3, 0.499999, 0.500001, 0 dpwr:, 3, 0.750377710062, 0.387029560373 D-energy-components:, 15, 4, 0.500004, 0.499996, 0 dpwr:, 4, 0.777260850887, 0.536947533714 D-energy-components:, 15, 5, 0.499997, 0.500003, 0 dpwr:, 5, 0.903059013493, 0.390621313084 D-energy-components:, 15, 6, 0.500003, 0.499997, 0 dpwr:, 6, 0.961984414335, 0.364042303197 D-energy-components:, 15, 7, 0.500001, 0.499999, 0 dpwr:, 7, 1.04190649727, 0.322910845377 D-energy-components:, 15, 8, 0.499999, 0.500001, 0 dpwr:, 8, 1.10003674479, 0.6489227097 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.840166091919 D-energy-components:, 16, 1, 0, 0, 0 dpwr:, 1, 0.0, 0.0 D-energy-components:, 16, 2, 0.500003, 0.499997, 0 dpwr:, 2, 0.55270923201, 0.856743464223 Outputting fields to test_output_dpwr_in_objects-d.k16.b02.te.h5... D-energy-components:, 16, 3, 0.455928, 0.544072, 0 dpwr:, 3, 0.773226559307, 0.528826082855 D-energy-components:, 16, 4, 0.544076, 0.455924, 0 dpwr:, 4, 0.773229883948, 0.528807968569 D-energy-components:, 16, 5, 0.5, 0.5, 0 dpwr:, 5, 0.922996519586, 0.0891005441649 D-energy-components:, 16, 6, 0.125495, 0.874505, 0 dpwr:, 6, 1.00017111769, 0.401246629326 D-energy-components:, 16, 7, 0.874503, 0.125497, 0 dpwr:, 7, 1.00017200323, 0.401252017686 D-energy-components:, 16, 8, 0.499991, 0.500009, 0 .dpwr:, 8, 1.09282093175, 0.287205379086 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 7.00758194923 done test_output_dpwr_in_objects: 7.01s test_output_efield_z ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00639486312866 solve_kpoint (0,0,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1, tm band 2, tm band 3, tm band 4, tm band 5, tm band 6, tm band 7, tm band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 61 iterations. tmfreqs:, 1, 0, 0, 0, 0, 0, 0.546027, 0.552094, 0.552096, 0.812093, 0.854314, 0.951107, 1.08259 elapsed time for k point: 0.556072950363 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tmfreqs:, 2, 0.1, 0, 0, 0.1, 0.0643671, 0.518896, 0.552617, 0.579095, 0.812721, 0.852958, 0.941428, 1.04995 elapsed time for k point: 0.277626991272 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 3, 0.2, 0, 0, 0.2, 0.126061, 0.48795, 0.553991, 0.610359, 0.812384, 0.849484, 0.912816, 1.02959 elapsed time for k point: 0.157293081284 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 4, 0.3, 0, 0, 0.3, 0.181523, 0.45665, 0.555709, 0.644685, 0.802314, 0.845326, 0.880698, 1.025 elapsed time for k point: 0.158336877823 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 5, 0.4, 0, 0, 0.4, 0.224302, 0.429317, 0.557116, 0.682524, 0.772176, 0.842059, 0.865404, 1.0269 elapsed time for k point: 0.159569978714 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 6, 0.5, 0, 0, 0.5, 0.241821, 0.417114, 0.557658, 0.713395, 0.741311, 0.84083, 0.862516, 1.02856 elapsed time for k point: 0.158420801163 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.245235, 0.4236, 0.551085, 0.711571, 0.749855, 0.841982, 0.862609, 1.01714 elapsed time for k point: 0.149574995041 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 11 iterations. tmfreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.25442, 0.441321, 0.535034, 0.706018, 0.772267, 0.845818, 0.862861, 0.989395 elapsed time for k point: 0.134574174881 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.266397, 0.465222, 0.516482, 0.697068, 0.802974, 0.853388, 0.863228, 0.954203 elapsed time for k point: 0.14505982399 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 14 iterations. tmfreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.276774, 0.48701, 0.501823, 0.687264, 0.837704, 0.86397, 0.865932, 0.916273 elapsed time for k point: 0.169677019119 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 15 iterations. tmfreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.280948, 0.496196, 0.496197, 0.682617, 0.859474, 0.878316, 0.878316, 0.879351 elapsed time for k point: 0.182980060577 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 16 iterations. tmfreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.27141, 0.485365, 0.501693, 0.689111, 0.830636, 0.844978, 0.893706, 0.898991 elapsed time for k point: 0.192491054535 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.236529, 0.473888, 0.515941, 0.679199, 0.819377, 0.829518, 0.897603, 0.933446 elapsed time for k point: 0.145136833191 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.172884, 0.482973, 0.533242, 0.640233, 0.819202, 0.838111, 0.910409, 0.976551 elapsed time for k point: 0.146471977234 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 14 iterations. tmfreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.0904174, 0.510404, 0.546943, 0.593803, 0.81373, 0.851132, 0.935551, 1.02882 elapsed time for k point: 0.169417142868 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 59 iterations. tmfreqs:, 16, 0, 0, 0, 0, 0, 0.546027, 0.552094, 0.552096, 0.812093, 0.854314, 0.951107, 1.08259 elapsed time for k point: 0.534125804901 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.280947953525 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.417114249325 at Vector3<0.5, 0.0, 0.0> to 0.546026779337 at Vector3<0.0, 0.0, 0.0> Band 3 range: 0.496197452765 at Vector3<0.5, 0.5, 0.0> to 0.557657636298 at Vector3<0.5, 0.0, 0.0> Band 4 range: 0.552095586454 at Vector3<0.0, 0.0, 0.0> to 0.713395151642 at Vector3<0.5, 0.0, 0.0> Band 5 range: 0.741310965707 at Vector3<0.5, 0.0, 0.0> to 0.859474106957 at Vector3<0.5, 0.5, 0.0> Band 6 range: 0.829517615025 at Vector3<0.3, 0.3, 0.0> to 0.878315547346 at Vector3<0.5, 0.5, 0.0> Band 7 range: 0.862515905381 at Vector3<0.5, 0.0, 0.0> to 0.951107453906 at Vector3<0.0, 0.0, 0.0> Band 8 range: 0.879351095829 at Vector3<0.5, 0.5, 0.0> to 1.08259238415 at Vector3<0.0, 0.0, 0.0> Gap from band 1 (0.280947953525) to band 2 (0.417114249325), 39.0126539564% Gap from band 4 (0.713395151642) to band 5 (0.741310965707), 3.83800050492% total elapsed time for run: 3.44721579552 done Fixing e-field (band 8) phase by -2.55726e-08 + 1i; max ampl. = 1.49941 FOutputting fields to test_output_efield_z-e.k16.b08.z.tm.h5... test_output_efield_z: 3.47s test_output_field_to_file ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00621104240417 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.470210075378 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.3727619648 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.310256004333 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.284245014191 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.330976963043 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.468464136124 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.384798049927 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.329324007034 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.282789945602 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.271965026855 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.268882989883 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.21327996254 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.246832847595 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.339018106461 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.396973848343 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.827692985535 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 6.80875205994 done epsilon: 1-12, mean 2.38229, harm. mean 1.1448, 14.5508% > 1, 12.5663% "fill" .Outputting test_output_field_to_file-epsilon.h5... test_output_field_to_file: 6.87s test_output_tot_pwr ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00638318061829 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.467704057693 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.37200498581 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.303651094437 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.277405023575 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.328362941742 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.45906496048 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.376153945923 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.326295852661 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.280155897141 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.274630069733 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.271255016327 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.213340044022 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.24313378334 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.339786052704 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.395285129547 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.826232910156 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 6.76477098465 done D-energy-components:, 16, 8, 0.499991, 0.500009, 0 B-energy-components:, 16, 8, 0, 0, 1 Outputting test_output_tot_pwr-tot.rpwr.k16.b08.te.h5... D-energy-components:, 16, 8, 0.499991, 0.500009, 0 B-energy-components:, 16, 8, 0, 0, 1 .test_output_tot_pwr: 6.78s test_point_defect_state ======================== Initializing eigensolver data Computing 50 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 80 x 80 x 1. Solving for 10 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (5, 0, 0) (0, 5, 0) (0, 0, 1) Cell volume = 25 Reciprocal lattice vectors (/ 2 pi): (0.2, -0, 0) (-0, 0.2, -0) (0, -0, 1) Geometric objects: cylinder, center = (2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 5 and 33 object nodes (vs. 26 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 1 k-points Vector3<0.5, 0.5, 0.0> elapsed time for initialization: 0.141294956207 solve_kpoint (0.5,0.5,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1, tm band 2, tm band 3, tm band 4, tm band 5, tm band 6, tm band 7, tm band 8, tm band 9, tm band 10, tm band 11, tm band 12, tm band 13, tm band 14, tm band 15, tm band 16, tm band 17, tm band 18, tm band 19, tm band 20, tm band 21, tm band 22, tm band 23, tm band 24, tm band 25, tm band 26, tm band 27, tm band 28, tm band 29, tm band 30, tm band 31, tm band 32, tm band 33, tm band 34, tm band 35, tm band 36, tm band 37, tm band 38, tm band 39, tm band 40, tm band 41, tm band 42, tm band 43, tm band 44, tm band 45, tm band 46, tm band 47, tm band 48, tm band 49, tm band 50 Solving for bands 1 to 10... iteration 30: trace = 0.25029551407462 (7.06248e-07% change) Finished solving for bands 1 to 10 after 39 iterations. Solving for bands 11 to 20... iteration 25: trace = 0.552304415600321 (1.60861e-09% change) Finished solving for bands 11 to 20 after 28 iterations. Solving for bands 21 to 30... iteration 21: trace = 1.3687953357986 (0.00151382% change) iteration 42: trace = 1.368743856078554 (6.97534e-07% change) iteration 64: trace = 1.368732103643045 (3.7208e-05% change) iteration 86: trace = 1.368731192938474 (3.69664e-08% change) iteration 108: trace = 1.368731049042095 (5.16482e-09% change) iteration 130: trace = 1.368730919933027 (2.09655e-06% change) iteration 152: trace = 1.368730819765443 (1.66649e-08% change) iteration 174: trace = 1.368730785427104 (2.34953e-10% change) Finished solving for bands 21 to 30 after 175 iterations. Solving for bands 31 to 40... iteration 20: trace = 2.150656547149592 (0.0077526% change) iteration 40: trace = 2.150328828088531 (0.000298383% change) iteration 60: trace = 2.150313170310699 (1.43442e-08% change) iteration 80: trace = 2.150313167392373 (3.25881e-09% change) Finished solving for bands 31 to 40 after 94 iterations. Solving for bands 41 to 50... iteration 19: trace = 2.43508053517778 (0.0215799% change) iteration 38: trace = 2.434024674078272 (1.13797e-05% change) iteration 57: trace = 2.434024312305563 (3.12759e-09% change) Finished solving for bands 41 to 50 after 65 iterations. Finished k-point with 80.2 mean iterations/band. tmfreqs:, 1, 0.5, 0.5, 0, 0.141421, 0.0904454, 0.0904609, 0.0904609, 0.0944816, 0.190067, 0.190067, 0.190067, 0.190068, 0.19007, 0.190245, 0.190245, 0.203237, 0.237196, 0.237298, 0.237298, 0.240872, 0.246066, 0.246066, 0.246066, 0.257408, 0.267453, 0.26748, 0.26748, 0.279812, 0.3773, 0.423294, 0.423305, 0.426098, 0.426099, 0.460406, 0.460406, 0.460407, 0.460423, 0.460426, 0.46271, 0.462711, 0.465484, 0.465538, 0.469456, 0.469457, 0.469856, 0.474575, 0.480164, 0.480164, 0.490505, 0.499359, 0.49936, 0.511689, 0.51273, 0.51273 elapsed time for k point: 76.6517720222 total elapsed time for run: 76.794162035 done Fixing e-field (band 25) phase by 0.243925 + 0.969794i; max ampl. = 0.816569 Outputting fields to test_point_defect_state-e.k01.b25.z.tm.h5... Fixing d-field (band 25) phase by -1 + 2.62349e-07i; max ampl. = 3.30563 D-energy-components:, 1, 25, 0, 0, 1 Initializing eigensolver data Computing 1 bands with 1e-08 tolerance Target frequency is 0.3493 Working in 2 dimensions. Grid size is 80 x 80 x 1. Solving for 1 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (5, 0, 0) (0, 5, 0) (0, 0, 1) Cell volume = 25 Reciprocal lattice vectors (/ 2 pi): (0.2, -0, 0) (-0, 0.2, -0) (0, -0, 1) Geometric objects: cylinder, center = (2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 5 and 33 object nodes (vs. 26 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 1 k-points Vector3<0.5, 0.5, 0.0> elapsed time for initialization: 0.0248529911041 solve_kpoint (0.5,0.5,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1 Solving for bands 1 to 1... Finished solving for bands 1 to 1 after 159 iterations. tmfreqs:, 1, 0.5, 0.5, 0, 0.141421, 0.3773 elapsed time for k point: 2.46684002876 total elapsed time for run: 2.49199485779 done Initializing eigensolver data Computing 1 bands with 1e-08 tolerance Target frequency is 0.3493 Working in 2 dimensions. Grid size is 80 x 80 x 1. Solving for 1 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (5, 0, 0) (0, 5, 0) (0, 0, 1) Cell volume = 25 Reciprocal lattice vectors (/ 2 pi): (0.2, -0, 0) (-0, 0.2, -0) (0, -0, 1) Geometric objects: cylinder, center = (2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 5 and 34 object nodes (vs. 27 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 1 k-points Vector3<0.5, 0.5, 0.0> elapsed time for initialization: 0.0230350494385 solve_kpoint (0.5,0.5,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1 Solving for bands 1 to 1... Finished solving for bands 1 to 1 after 159 iterations. tmfreqs:, 1, 0.5, 0.5, 0, 0.141421, 0.3773 elapsed time for k point: 2.43815803528 total elapsed time for run: 2.46143102646 done Initializing eigensolver data Computing 1 bands with 1e-08 tolerance Target frequency is 0.3493 Working in 2 dimensions. Grid size is 80 x 80 x 1. Solving for 1 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (5, 0, 0) (0, 5, 0) (0, 0, 1) Cell volume = 25 Reciprocal lattice vectors (/ 2 pi): (0.2, -0, 0) (-0, 0.2, -0) (0, -0, 1) Geometric objects: cylinder, center = (2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 5 and 34 object nodes (vs. 27 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 1 k-points Vector3<0.5, 0.5, 0.0> elapsed time for initialization: 0.0232989788055 solve_kpoint (0.5,0.5,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1 Solving for bands 1 to 1... Finished solving for bands 1 to 1 after 187 iterations. tmfreqs:, 1, 0.5, 0.5, 0, 0.141421, 0.282209 elapsed time for k point: 2.84709000587 total elapsed time for run: 2.87062215805 done Initializing eigensolver data Computing 1 bands with 1e-08 tolerance Target frequency is 0.3493 Working in 2 dimensions. Grid size is 80 x 80 x 1. Solving for 1 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (5, 0, 0) (0, 5, 0) (0, 0, 1) Cell volume = 25 Reciprocal lattice vectors (/ 2 pi): (0.2, -0, 0) (-0, 0.2, -0) (0, -0, 1) Geometric objects: cylinder, center = (2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 5 and 34 object nodes (vs. 27 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 1 k-points Vector3<0.5, 0.5, 0.0> elapsed time for initialization: 0.0228600502014 solve_kpoint (0.5,0.5,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1 Solving for bands 1 to 1... Finished solving for bands 1 to 1 after 144 iterations. tmfreqs:, 1, 0.5, 0.5, 0, 0.141421, 0.301374 elapsed time for k point: 2.18598604202 total elapsed time for run: 2.20908093452 done Initializing eigensolver data Computing 1 bands with 1e-08 tolerance Target frequency is 0.3493 Working in 2 dimensions. Grid size is 80 x 80 x 1. Solving for 1 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (5, 0, 0) (0, 5, 0) (0, 0, 1) Cell volume = 25 Reciprocal lattice vectors (/ 2 pi): (0.2, -0, 0) (-0, 0.2, -0) (0, -0, 1) Geometric objects: cylinder, center = (2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 5 and 34 object nodes (vs. 27 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 1 k-points Vector3<0.5, 0.5, 0.0> elapsed time for initialization: 0.0230989456177 solve_kpoint (0.5,0.5,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1 Solving for bands 1 to 1... Finished solving for bands 1 to 1 after 130 iterations. tmfreqs:, 1, 0.5, 0.5, 0, 0.141421, 0.317732 elapsed time for k point: 2.00850987434 total elapsed time for run: 2.03185009956 done Initializing eigensolver data Computing 1 bands with 1e-08 tolerance Target frequency is 0.3493 Working in 2 dimensions. Grid size is 80 x 80 x 1. Solving for 1 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (5, 0, 0) (0, 5, 0) (0, 0, 1) Cell volume = 25 Reciprocal lattice vectors (/ 2 pi): (0.2, -0, 0) (-0, 0.2, -0) (0, -0, 1) Geometric objects: cylinder, center = (2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 5 and 34 object nodes (vs. 27 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 1 k-points Vector3<0.5, 0.5, 0.0> elapsed time for initialization: 0.0233838558197 solve_kpoint (0.5,0.5,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1 Solving for bands 1 to 1... Finished solving for bands 1 to 1 after 142 iterations. tmfreqs:, 1, 0.5, 0.5, 0, 0.141421, 0.308953 elapsed time for k point: 2.138890028 total elapsed time for run: 2.1625430584 done Initializing eigensolver data Computing 1 bands with 1e-08 tolerance Target frequency is 0.3493 Working in 2 dimensions. Grid size is 80 x 80 x 1. Solving for 1 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (5, 0, 0) (0, 5, 0) (0, 0, 1) Cell volume = 25 Reciprocal lattice vectors (/ 2 pi): (0.2, -0, 0) (-0, 0.2, -0) (0, -0, 1) Geometric objects: cylinder, center = (2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 5 and 34 object nodes (vs. 27 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 1 k-points Vector3<0.5, 0.5, 0.0> elapsed time for initialization: 0.0230090618134 solve_kpoint (0.5,0.5,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1 Solving for bands 1 to 1... Finished solving for bands 1 to 1 after 139 iterations. tmfreqs:, 1, 0.5, 0.5, 0, 0.141421, 0.314172 elapsed time for k point: 2.15126800537 total elapsed time for run: 2.17454600334 done Initializing eigensolver data Computing 1 bands with 1e-08 tolerance Target frequency is 0.3493 Working in 2 dimensions. Grid size is 80 x 80 x 1. Solving for 1 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (5, 0, 0) (0, 5, 0) (0, 0, 1) Cell volume = 25 Reciprocal lattice vectors (/ 2 pi): (0.2, -0, 0) (-0, 0.2, -0) (0, -0, 1) Geometric objects: cylinder, center = (2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 5 and 34 object nodes (vs. 27 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 1 k-points Vector3<0.5, 0.5, 0.0> elapsed time for initialization: 0.0236418247223 solve_kpoint (0.5,0.5,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1 Solving for bands 1 to 1... Finished solving for bands 1 to 1 after 138 iterations. tmfreqs:, 1, 0.5, 0.5, 0, 0.141421, 0.311508 elapsed time for k point: 2.14750480652 total elapsed time for run: 2.17139101028 done Initializing eigensolver data Computing 1 bands with 1e-08 tolerance Target frequency is 0.3493 Working in 2 dimensions. Grid size is 80 x 80 x 1. Solving for 1 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (5, 0, 0) (0, 5, 0) (0, 0, 1) Cell volume = 25 Reciprocal lattice vectors (/ 2 pi): (0.2, -0, 0) (-0, 0.2, -0) (0, -0, 1) Geometric objects: cylinder, center = (2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 5 and 34 object nodes (vs. 27 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 1 k-points Vector3<0.5, 0.5, 0.0> elapsed time for initialization: 0.0235011577606 solve_kpoint (0.5,0.5,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1 Solving for bands 1 to 1... Finished solving for bands 1 to 1 after 139 iterations. tmfreqs:, 1, 0.5, 0.5, 0, 0.141421, 0.314159 elapsed time for k point: 2.19328999519 total elapsed time for run: 2.2170279026 done Initializing eigensolver data Computing 1 bands with 1e-08 tolerance Target frequency is 0.3493 Working in 2 dimensions. Grid size is 80 x 80 x 1. Solving for 1 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (5, 0, 0) (0, 5, 0) (0, 0, 1) Cell volume = 25 Reciprocal lattice vectors (/ 2 pi): (0.2, -0, 0) (-0, 0.2, -0) (0, -0, 1) Geometric objects: cylinder, center = (2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 5 and 34 object nodes (vs. 27 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 1 k-points Vector3<0.5, 0.5, 0.0> elapsed time for initialization: 0.0233509540558 solve_kpoint (0.5,0.5,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1 Solving for bands 1 to 1... Finished solving for bands 1 to 1 after 136 iterations. tmfreqs:, 1, 0.5, 0.5, 0, 0.141421, 0.31282 elapsed time for k point: 2.07959604263 total elapsed time for run: 2.10319304466 done Initializing eigensolver data Computing 1 bands with 1e-08 tolerance Target frequency is 0.3493 Working in 2 dimensions. Grid size is 80 x 80 x 1. Solving for 1 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (5, 0, 0) (0, 5, 0) (0, 0, 1) Cell volume = 25 Reciprocal lattice vectors (/ 2 pi): (0.2, -0, 0) (-0, 0.2, -0) (0, -0, 1) Geometric objects: cylinder, center = (2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 5 and 34 object nodes (vs. 27 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 1 k-points Vector3<0.5, 0.5, 0.0> elapsed time for initialization: 0.0230979919434 solve_kpoint (0.5,0.5,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1 Solving for bands 1 to 1... Finished solving for bands 1 to 1 after 139 iterations. tmfreqs:, 1, 0.5, 0.5, 0, 0.141421, 0.314159 elapsed time for k point: 2.14468288422 total elapsed time for run: 2.16803002357 done Initializing eigensolver data Computing 1 bands with 1e-08 tolerance Target frequency is 0.3493 Working in 2 dimensions. Grid size is 80 x 80 x 1. Solving for 1 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (5, 0, 0) (0, 5, 0) (0, 0, 1) Cell volume = 25 Reciprocal lattice vectors (/ 2 pi): (0.2, -0, 0) (-0, 0.2, -0) (0, -0, 1) Geometric objects: cylinder, center = (2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 5 and 34 object nodes (vs. 27 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 1 k-points Vector3<0.5, 0.5, 0.0> elapsed time for initialization: 0.023020029068 solve_kpoint (0.5,0.5,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1 Solving for bands 1 to 1... Finished solving for bands 1 to 1 after 145 iterations. tmfreqs:, 1, 0.5, 0.5, 0, 0.141421, 0.313486 elapsed time for k point: 2.24779105186 total elapsed time for run: 2.27105903625 done Initializing eigensolver data Computing 1 bands with 1e-08 tolerance Target frequency is 0.3493 Working in 2 dimensions. Grid size is 80 x 80 x 1. Solving for 1 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (5, 0, 0) (0, 5, 0) (0, 0, 1) Cell volume = 25 Reciprocal lattice vectors (/ 2 pi): (0.2, -0, 0) (-0, 0.2, -0) (0, -0, 1) Geometric objects: cylinder, center = (2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 5 and 34 object nodes (vs. 27 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 1 k-points Vector3<0.5, 0.5, 0.0> elapsed time for initialization: 0.0235841274261 solve_kpoint (0.5,0.5,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1 Solving for bands 1 to 1... Finished solving for bands 1 to 1 after 139 iterations. tmfreqs:, 1, 0.5, 0.5, 0, 0.141421, 0.314159 elapsed time for k point: 2.13351798058 total elapsed time for run: 2.15733599663 done Initializing eigensolver data Computing 1 bands with 1e-08 tolerance Target frequency is 0.3493 Working in 2 dimensions. Grid size is 80 x 80 x 1. Solving for 1 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (5, 0, 0) (0, 5, 0) (0, 0, 1) Cell volume = 25 Reciprocal lattice vectors (/ 2 pi): (0.2, -0, 0) (-0, 0.2, -0) (0, -0, 1) Geometric objects: cylinder, center = (2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 5 and 34 object nodes (vs. 27 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 1 k-points Vector3<0.5, 0.5, 0.0> elapsed time for initialization: 0.0231120586395 solve_kpoint (0.5,0.5,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1 Solving for bands 1 to 1... Finished solving for bands 1 to 1 after 138 iterations. tmfreqs:, 1, 0.5, 0.5, 0, 0.141421, 0.313822 elapsed time for k point: 2.0994040966 total elapsed time for run: 2.12274980545 done Initializing eigensolver data Computing 1 bands with 1e-08 tolerance Target frequency is 0.3493 Working in 2 dimensions. Grid size is 80 x 80 x 1. Solving for 1 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (5, 0, 0) (0, 5, 0) (0, 0, 1) Cell volume = 25 Reciprocal lattice vectors (/ 2 pi): (0.2, -0, 0) (-0, 0.2, -0) (0, -0, 1) Geometric objects: cylinder, center = (2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 5 and 34 object nodes (vs. 27 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 1 k-points Vector3<0.5, 0.5, 0.0> elapsed time for initialization: 0.0233371257782 solve_kpoint (0.5,0.5,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1 Solving for bands 1 to 1... Finished solving for bands 1 to 1 after 139 iterations. tmfreqs:, 1, 0.5, 0.5, 0, 0.141421, 0.314159 elapsed time for k point: 2.1488969326 total elapsed time for run: 2.17247891426 done Initializing eigensolver data Computing 1 bands with 1e-08 tolerance Target frequency is 0.3493 Working in 2 dimensions. Grid size is 80 x 80 x 1. Solving for 1 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (5, 0, 0) (0, 5, 0) (0, 0, 1) Cell volume = 25 Reciprocal lattice vectors (/ 2 pi): (0.2, -0, 0) (-0, 0.2, -0) (0, -0, 1) Geometric objects: cylinder, center = (2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-1,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-1,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (-2,-2,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 5 and 34 object nodes (vs. 27 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 1 k-points Vector3<0.5, 0.5, 0.0> elapsed time for initialization: 0.0234770774841 solve_kpoint (0.5,0.5,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1 Solving for bands 1 to 1... Finished solving for bands 1 to 1 after 139 iterations. tmfreqs:, 1, 0.5, 0.5, 0, 0.141421, 0.314159 .elapsed time for k point: 2.18190288544 total elapsed time for run: 2.20563793182 done test_point_defect_state: 112.85s test_poynting ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00634217262268 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.472357988358 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.39975214005 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.305875062943 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.283254146576 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.328316926956 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.461605072021 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.380424022675 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.332226991653 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.285034179688 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.279716968536 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.269437789917 Outputting fields to test_poynting-flux.v.k11.b01.te.h5... Outputting fields to test_poynting-flux.v.k11.b02.te.h5... Outputting fields to test_poynting-flux.v.k11.b03.te.h5... Outputting fields to test_poynting-flux.v.k11.b04.te.h5... Outputting fields to test_poynting-flux.v.k11.b05.te.h5... Outputting fields to test_poynting-flux.v.k11.b06.te.h5... Outputting fields to test_poynting-flux.v.k11.b07.te.h5... Outputting fields to test_poynting-flux.v.k11.b08.te.h5... solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.212248086929 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.246832847595 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.340136051178 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.39689707756 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 ..elapsed time for k point: 0.835608005524 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 7.53619384766 done test_poynting: 7.56s test_resolution ======================== test_resolution: 0.00s test_run_te ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00641798973083 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.473460197449 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.39809703827 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.307378053665 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.277051925659 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.321910858154 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.456104040146 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.375862121582 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.321044921875 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.276428937912 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.268020868301 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.266596078873 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.21368598938 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.245825052261 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.336479187012 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.398173093796 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 .elapsed time for k point: 0.839979887009 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 6.78653717041 done test_run_te: 6.79s test_run_te_no_geometry ======================== Initializing eigensolver data Computing 8 bands with 1e-07 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: Geometric object tree has depth 1 and 0 object nodes (vs. 0 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00492596626282 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 8 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1.41421, 1.41421, 1.41421 elapsed time for k point: 0.0775878429413 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 2 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.1, 0.9, 1.00499, 1.00499, 1.1, 1.34536, 1.34536, 1.48661 elapsed time for k point: 0.031081199646 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.2, 0.8, 1.0198, 1.0198, 1.2, 1.28062, 1.28062, 1.56205 elapsed time for k point: 0.0194120407104 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.3, 0.7, 1.04403, 1.04403, 1.22066, 1.22066, 1.3, 1.64012 elapsed time for k point: 0.0192370414734 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.4, 0.6, 1.07703, 1.07703, 1.16619, 1.16619, 1.4, 1.72047 elapsed time for k point: 0.0193328857422 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.5, 0.5, 1.11803, 1.11803, 1.11803, 1.11803, 1.5, 1.80278 elapsed time for k point: 0.0193281173706 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 2 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.509902, 0.509902, 1.02956, 1.02956, 1.2083, 1.2083, 1.50333, 1.74929 elapsed time for k point: 0.0310950279236 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 2 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.538516, 0.566775, 0.956971, 0.9598, 1.3061, 1.30974, 1.52004, 1.59611 elapsed time for k point: 0.0311379432678 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 8 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.583095, 0.583095, 0.860233, 0.860233, 1.39284, 1.39284, 1.52971, 1.52971 elapsed time for k point: 0.0997359752655 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.640312, 0.640312, 0.781025, 0.781025, 1.48661, 1.48661, 1.55242, 1.55242 elapsed time for k point: 0.0197749137878 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.707107, 0.707107, 0.707107, 0.707107, 1.58114, 1.58114, 1.58114, 1.58114 elapsed time for k point: 0.019670009613 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 77 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.565685, 0.72111, 0.72111, 0.848528, 1.45602, 1.45602, 1.52315, 1.52315 elapsed time for k point: 0.881185054779 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.424264, 0.761577, 0.761577, 0.989949, 1.33417, 1.33417, 1.47648, 1.47648 elapsed time for k point: 0.019562959671 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.282843, 0.824621, 0.824621, 1.13137, 1.21655, 1.21655, 1.44222, 1.44222 elapsed time for k point: 0.0194661617279 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 1 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.141421, 0.905539, 0.905539, 1.10454, 1.10454, 1.27279, 1.42127, 1.42127 elapsed time for k point: 0.0197570323944 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 1 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1.41421, 1.41421, 1.41421 .elapsed time for k point: 0.0157558917999 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.707106781187 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.500000000035 at Vector3<0.5, 0.0, 0.0> to 1.00000000005 at Vector3<0.0, 0.0, 0.0> Band 3 range: 0.707106781188 at Vector3<0.5, 0.5, 0.0> to 1.11803398876 at Vector3<0.5, 0.0, 0.0> Band 4 range: 0.70710678119 at Vector3<0.5, 0.5, 0.0> to 1.13137084993 at Vector3<0.2, 0.2, 0.0> Band 5 range: 1.0 at Vector3<0.0, 0.0, 0.0> to 1.58113883008 at Vector3<0.5, 0.5, 0.0> Band 6 range: 1.11803398877 at Vector3<0.5, 0.0, 0.0> to 1.58113883009 at Vector3<0.5, 0.5, 0.0> Band 7 range: 1.28062484752 at Vector3<0.2, 0.0, 0.0> to 1.58113883009 at Vector3<0.5, 0.5, 0.0> Band 8 range: 1.41421356238 at Vector3<0.0, 0.0, 0.0> to 1.80277563765 at Vector3<0.5, 0.0, 0.0> total elapsed time for run: 1.35200405121 done test_run_te_no_geometry: 1.35s test_run_te_with_mu_material ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Initializing mu function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00871586799622 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 204 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.669987, 0.783178, 0.78318, 0.965522, 1.18154, 1.18154, 1.20597 elapsed time for k point: 3.65209913254 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 154 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0813996, 0.654814, 0.784954, 0.787051, 0.973107, 1.147, 1.15475, 1.23489 elapsed time for k point: 3.45261788368 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 109 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.161634, 0.615231, 0.789764, 0.798457, 0.982219, 1.11674, 1.12242, 1.27406 elapsed time for k point: 2.44912910461 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 98 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.238847, 0.561888, 0.796082, 0.816438, 0.967926, 1.09564, 1.12526, 1.31351 elapsed time for k point: 2.21010494232 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... iteration 176: trace = 6.685487478616417 (0.00925124% change) Finished solving for bands 1 to 8 after 279 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.307852, 0.505558, 0.80155, 0.837884, 0.938877, 1.07767, 1.16248, 1.26133 elapsed time for k point: 6.36220598221 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 77 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.344122, 0.473282, 0.803737, 0.850595, 0.922321, 1.07128, 1.20345, 1.21829 elapsed time for k point: 1.78534293175 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 87 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.349806, 0.482366, 0.768987, 0.886345, 0.90475, 1.06612, 1.21866, 1.22114 elapsed time for k point: 1.9815299511 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 102 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.365505, 0.508431, 0.720714, 0.859475, 0.938003, 1.05964, 1.21894, 1.25305 elapsed time for k point: 2.33441209793 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 123 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.387171, 0.548256, 0.676549, 0.800668, 0.989113, 1.05673, 1.21445, 1.27327 elapsed time for k point: 2.77789497375 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... iteration 176: trace = 6.67715220308155 (0.0210549% change) Finished solving for bands 1 to 8 after 328 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.407624, 0.596325, 0.643243, 0.739976, 1.03397, 1.05588, 1.19281, 1.24454 elapsed time for k point: 7.43365812302 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 69 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.416529, 0.630179, 0.63018, 0.701793, 1.05575, 1.05575, 1.17509, 1.24128 elapsed time for k point: 1.56020593643 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 99 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.39535, 0.591668, 0.641198, 0.766761, 1.02252, 1.04927, 1.20755, 1.24532 elapsed time for k point: 2.24600791931 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 127 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.326025, 0.580731, 0.672069, 0.852808, 0.974388, 1.03211, 1.23516, 1.24808 elapsed time for k point: 2.88514089584 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 106 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.226064, 0.606225, 0.716276, 0.861027, 1.00531, 1.00779, 1.22714, 1.22782 elapsed time for k point: 2.39601993561 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 126 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.114855, 0.645572, 0.76138, 0.812, 0.980404, 1.09879, 1.19545, 1.21663 elapsed time for k point: 2.83639597893 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 132 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.669987, 0.783178, 0.78318, 0.965522, 1.18154, 1.18154, 1.20597 elapsed time for k point: 2.38153004646 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.416529123304 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.473282323487 at Vector3<0.5, 0.0, 0.0> to 0.669986728129 at Vector3<0.0, 0.0, 0.0> Band 3 range: 0.630180264682 at Vector3<0.5, 0.5, 0.0> to 0.803736532303 at Vector3<0.5, 0.0, 0.0> Band 4 range: 0.701793255698 at Vector3<0.5, 0.5, 0.0> to 0.886344816771 at Vector3<0.5, 0.1, 0.0> Band 5 range: 0.904749848581 at Vector3<0.5, 0.1, 0.0> to 1.0557468193 at Vector3<0.5, 0.5, 0.0> Band 6 range: 1.00779256061 at Vector3<0.2, 0.2, 0.0> to 1.18154037443 at Vector3<0.0, 0.0, 0.0> Band 7 range: 1.12242425197 at Vector3<0.2, 0.0, 0.0> to 1.23515676792 at Vector3<0.3, 0.3, 0.0> Band 8 range: 1.20597286367 at Vector3<0.0, 0.0, 0.0> to 1.31350625236 at Vector3<0.3, 0.0, 0.0> Gap from band 1 (0.416529123304) to band 2 (0.473282323487), 12.7562306348% Gap from band 4 (0.886344816771) to band 5 (0.904749848581), 2.05517130568% total elapsed time for run: 48.7569789886 done mu: 1-5, mean 1.50265, harm. mean 1.12084, 14.5508% > 1, 12.5663% "fill" Outputting test_run_te_with_mu_material-mu.h5... mu: 1-5, mean 1.50265, harm. mean 1.12084, 14.5508% > 1, 12.5663% "fill" .test_run_te_with_mu_material: 48.78s test_run_tm ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00637316703796 solve_kpoint (0,0,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1, tm band 2, tm band 3, tm band 4, tm band 5, tm band 6, tm band 7, tm band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 61 iterations. tmfreqs:, 1, 0, 0, 0, 0, 0, 0.546027, 0.552094, 0.552096, 0.812093, 0.854314, 0.951107, 1.08259 elapsed time for k point: 0.549715995789 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tmfreqs:, 2, 0.1, 0, 0, 0.1, 0.0643671, 0.518896, 0.552617, 0.579095, 0.812721, 0.852958, 0.941428, 1.04995 elapsed time for k point: 0.265197038651 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 3, 0.2, 0, 0, 0.2, 0.126061, 0.48795, 0.553991, 0.610359, 0.812384, 0.849484, 0.912816, 1.02959 elapsed time for k point: 0.153678894043 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 4, 0.3, 0, 0, 0.3, 0.181523, 0.45665, 0.555709, 0.644685, 0.802314, 0.845326, 0.880698, 1.025 elapsed time for k point: 0.153062820435 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 5, 0.4, 0, 0, 0.4, 0.224302, 0.429317, 0.557116, 0.682524, 0.772176, 0.842059, 0.865404, 1.0269 elapsed time for k point: 0.154461145401 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 6, 0.5, 0, 0, 0.5, 0.241821, 0.417114, 0.557658, 0.713395, 0.741311, 0.84083, 0.862516, 1.02856 elapsed time for k point: 0.153437852859 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.245235, 0.4236, 0.551085, 0.711571, 0.749855, 0.841982, 0.862609, 1.01714 elapsed time for k point: 0.144428014755 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 11 iterations. tmfreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.25442, 0.441321, 0.535034, 0.706018, 0.772267, 0.845818, 0.862861, 0.989395 elapsed time for k point: 0.132454156876 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.266397, 0.465222, 0.516482, 0.697068, 0.802974, 0.853388, 0.863228, 0.954203 elapsed time for k point: 0.14201593399 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 14 iterations. tmfreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.276774, 0.48701, 0.501823, 0.687264, 0.837704, 0.86397, 0.865932, 0.916273 elapsed time for k point: 0.166377067566 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 15 iterations. tmfreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.280948, 0.496196, 0.496197, 0.682617, 0.859474, 0.878316, 0.878316, 0.879351 elapsed time for k point: 0.17861700058 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 16 iterations. tmfreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.27141, 0.485365, 0.501693, 0.689111, 0.830636, 0.844978, 0.893706, 0.898991 elapsed time for k point: 0.191589832306 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.236529, 0.473888, 0.515941, 0.679199, 0.819377, 0.829518, 0.897603, 0.933446 elapsed time for k point: 0.144359827042 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.172884, 0.482973, 0.533242, 0.640233, 0.819202, 0.838111, 0.910409, 0.976551 elapsed time for k point: 0.144716978073 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 14 iterations. tmfreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.0904174, 0.510404, 0.546943, 0.593803, 0.81373, 0.851132, 0.935551, 1.02882 elapsed time for k point: 0.166445970535 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 59 iterations. tmfreqs:, 16, 0, 0, 0, 0, 0, 0.546027, 0.552094, 0.552096, 0.812093, 0.854314, 0.951107, 1.08259 .elapsed time for k point: 0.538223028183 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.280947953525 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.417114249325 at Vector3<0.5, 0.0, 0.0> to 0.546026779337 at Vector3<0.0, 0.0, 0.0> Band 3 range: 0.496197452765 at Vector3<0.5, 0.5, 0.0> to 0.557657636298 at Vector3<0.5, 0.0, 0.0> Band 4 range: 0.552095586454 at Vector3<0.0, 0.0, 0.0> to 0.713395151642 at Vector3<0.5, 0.0, 0.0> Band 5 range: 0.741310965707 at Vector3<0.5, 0.0, 0.0> to 0.859474106957 at Vector3<0.5, 0.5, 0.0> Band 6 range: 0.829517615025 at Vector3<0.3, 0.3, 0.0> to 0.878315547346 at Vector3<0.5, 0.5, 0.0> Band 7 range: 0.862515905381 at Vector3<0.5, 0.0, 0.0> to 0.951107453906 at Vector3<0.0, 0.0, 0.0> Band 8 range: 0.879351095829 at Vector3<0.5, 0.5, 0.0> to 1.08259238415 at Vector3<0.0, 0.0, 0.0> Gap from band 1 (0.280947953525) to band 2 (0.417114249325), 39.0126539564% Gap from band 4 (0.713395151642) to band 5 (0.741310965707), 3.83800050492% total elapsed time for run: 3.38917303085 done test_run_tm: 3.39s test_set_eigenvectors ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00636410713196 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.471108913422 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.3894431591 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.306835174561 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.278734922409 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.32820892334 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.46407699585 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.389208078384 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.328926801682 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.284430980682 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.275800943375 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.265853881836 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.211485862732 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.250133037567 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.347898006439 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.399661064148 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.833754062653 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 6.8359079361 done Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00638389587402 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.485156059265 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.41134595871 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.304665088654 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.283077001572 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.330136060715 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.470599889755 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.393348932266 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.342798948288 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.288775920868 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.274645090103 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.270714998245 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.213114976883 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.248109817505 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.336370944977 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.39569401741 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.832211017609 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 6.89118885994 done Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00630593299866 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.464326858521 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.35954117775 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.302867889404 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.282435894012 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.322895050049 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.454726934433 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.383538961411 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.330589056015 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.283886909485 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.272151947021 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.261220932007 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.20571398735 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.236248016357 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.327035188675 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.378849983215 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 .elapsed time for k point: 0.80238699913 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 6.67866301537 done test_set_eigenvectors: 20.41s test_sq_rods ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00625586509705 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 46 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.561945, 0.780843, 0.780846, 0.924372, 1.00804, 1.00804, 1.09859 elapsed time for k point: 0.40470790863 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 134 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897998, 0.56021, 0.767785, 0.782438, 0.912603, 1.00889, 1.00949, 1.11586 elapsed time for k point: 1.49186491966 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 27 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178853, 0.553301, 0.732522, 0.786672, 0.890463, 1.01386, 1.02078, 1.11301 elapsed time for k point: 0.304638147354 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 22 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.266124, 0.534865, 0.689376, 0.79205, 0.872926, 1.0209, 1.04285, 1.10753 elapsed time for k point: 0.246901035309 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 27 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.349588, 0.49478, 0.658508, 0.796524, 0.862684, 1.02898, 1.07044, 1.10003 elapsed time for k point: 0.301432132721 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 48 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.413346, 0.444623, 0.648672, 0.798265, 0.859327, 1.03311, 1.0958, 1.09742 elapsed time for k point: 0.529062986374 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.424298, 0.448983, 0.644549, 0.802551, 0.854853, 0.98984, 1.05831, 1.11679 elapsed time for k point: 0.365803003311 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 27 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.455354, 0.461161, 0.63323, 0.814782, 0.834251, 0.934558, 1.01274, 1.12367 elapsed time for k point: 0.302997112274 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.478427, 0.501912, 0.61745, 0.784489, 0.83371, 0.906541, 0.967734, 1.12636 elapsed time for k point: 0.259683132172 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.495605, 0.556867, 0.601739, 0.720584, 0.858432, 0.897772, 0.926611, 1.12762 elapsed time for k point: 0.270768880844 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 22 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.503606, 0.594344, 0.594357, 0.679389, 0.883665, 0.895782, 0.895787, 1.12801 elapsed time for k point: 0.261228084564 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.474671, 0.549917, 0.608032, 0.745035, 0.848355, 0.895854, 0.945891, 1.12708 elapsed time for k point: 0.212904930115 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 20 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.373254, 0.543225, 0.646251, 0.817389, 0.830457, 0.896516, 1.0176, 1.12198 elapsed time for k point: 0.23668384552 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252369, 0.551073, 0.700804, 0.797552, 0.899586, 0.90339, 1.08791, 1.10099 elapsed time for k point: 0.304238080978 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 35 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.12694, 0.558854, 0.755651, 0.785047, 0.909884, 0.968813, 1.04814, 1.11332 elapsed time for k point: 0.413785934448 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 85 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.561945, 0.780843, 0.780846, 0.924372, 1.00804, 1.00804, 1.09859 elapsed time for k point: 0.764443874359 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.503605801522 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.444622913471 at Vector3<0.5, 0.0, 0.0> to 0.594344024552 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.594356639447 at Vector3<0.5, 0.5, 0.0> to 0.780842812191 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679388741308 at Vector3<0.5, 0.5, 0.0> to 0.817389371954 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.830457382234 at Vector3<0.3, 0.3, 0.0> to 0.924371683059 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.895781768412 at Vector3<0.5, 0.5, 0.0> to 1.03311041392 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.895786874533 at Vector3<0.5, 0.5, 0.0> to 1.09580214922 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.09741680959 at Vector3<0.5, 0.0, 0.0> to 1.12801276481 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.594344024552) to band 3 (0.594356639447), 0.00212246791043% Gap from band 4 (0.817389371954) to band 5 (0.830457382234), 1.58607106473% Gap from band 7 (1.09580214922) to band 8 (1.09741680959), 0.14724114588% total elapsed time for run: 6.68128490448 done Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00624203681946 solve_kpoint (0,0,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1, tm band 2, tm band 3, tm band 4, tm band 5, tm band 6, tm band 7, tm band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 35 iterations. tmfreqs:, 1, 0, 0, 0, 0, 0, 0.550336, 0.561338, 0.56134, 0.822948, 0.868842, 0.965325, 1.08938 elapsed time for k point: 0.321685791016 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 27 iterations. tmfreqs:, 2, 0.1, 0, 0, 0.1, 0.0651416, 0.525004, 0.561885, 0.586307, 0.823536, 0.867346, 0.954632, 1.05688 elapsed time for k point: 0.311887025833 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 3, 0.2, 0, 0, 0.2, 0.127665, 0.49365, 0.563323, 0.617312, 0.822737, 0.86353, 0.924306, 1.03882 elapsed time for k point: 0.153956890106 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 4, 0.3, 0, 0, 0.3, 0.184047, 0.461592, 0.565122, 0.651397, 0.810839, 0.858984, 0.892949, 1.03589 elapsed time for k point: 0.152780771255 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 5, 0.4, 0, 0, 0.4, 0.227778, 0.433361, 0.566596, 0.689045, 0.778792, 0.855425, 0.879398, 1.03874 elapsed time for k point: 0.152604103088 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 14 iterations. tmfreqs:, 6, 0.5, 0, 0, 0.5, 0.245809, 0.420657, 0.567163, 0.720092, 0.747203, 0.85409, 0.877012, 1.0408 elapsed time for k point: 0.164224863052 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 11 iterations. tmfreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.249299, 0.427308, 0.560221, 0.718025, 0.756122, 0.855013, 0.877106, 1.02917 elapsed time for k point: 0.131268978119 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.258693, 0.445541, 0.543385, 0.711698, 0.77935, 0.858136, 0.877357, 1.00092 elapsed time for k point: 0.142038822174 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.270963, 0.470322, 0.524053, 0.701396, 0.810963, 0.864394, 0.877683, 0.965108 elapsed time for k point: 0.141722917557 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 14 iterations. tmfreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.281614, 0.493207, 0.508823, 0.689961, 0.846785, 0.874595, 0.878068, 0.926581 elapsed time for k point: 0.164912939072 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 15 iterations. tmfreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.285906, 0.502981, 0.502983, 0.684476, 0.874359, 0.883317, 0.883317, 0.892993 elapsed time for k point: 0.176779985428 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 17 iterations. tmfreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.276089, 0.491352, 0.508683, 0.69258, 0.839723, 0.856431, 0.907219, 0.907347 elapsed time for k point: 0.201142072678 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.240239, 0.47923, 0.523499, 0.685362, 0.829266, 0.840451, 0.910791, 0.941595 elapsed time for k point: 0.143509864807 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.17524, 0.488533, 0.541561, 0.64751, 0.83002, 0.850443, 0.922657, 0.983925 elapsed time for k point: 0.14057302475 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.0915259, 0.516393, 0.555924, 0.601211, 0.824561, 0.86529, 0.948412, 1.03526 elapsed time for k point: 0.153081178665 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 59 iterations. tmfreqs:, 16, 0, 0, 0, 0, 0, 0.550336, 0.561338, 0.56134, 0.822948, 0.868842, 0.965325, 1.08938 .elapsed time for k point: 0.531528949738 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.28590577912 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.4206573384 at Vector3<0.5, 0.0, 0.0> to 0.550336075483 at Vector3<0.0, 0.0, 0.0> Band 3 range: 0.502983097837 at Vector3<0.5, 0.5, 0.0> to 0.567163287813 at Vector3<0.5, 0.0, 0.0> Band 4 range: 0.561339793989 at Vector3<0.0, 0.0, 0.0> to 0.720091820456 at Vector3<0.5, 0.0, 0.0> Band 5 range: 0.747202991048 at Vector3<0.5, 0.0, 0.0> to 0.874359380501 at Vector3<0.5, 0.5, 0.0> Band 6 range: 0.840450969753 at Vector3<0.3, 0.3, 0.0> to 0.883317372582 at Vector3<0.5, 0.5, 0.0> Band 7 range: 0.877011871833 at Vector3<0.5, 0.0, 0.0> to 0.965325380898 at Vector3<0.0, 0.0, 0.0> Band 8 range: 0.89299334956 at Vector3<0.5, 0.5, 0.0> to 1.08937768201 at Vector3<0.0, 0.0, 0.0> Gap from band 1 (0.28590577912) to band 2 (0.4206573384), 38.1428228955% Gap from band 4 (0.720091820456) to band 5 (0.747202991048), 3.69539514201% total elapsed time for run: 3.19380021095 done test_sq_rods: 9.88s test_strip ======================== Initializing eigensolver data Computing 4 bands with 1e-12 tolerance Working in 3 dimensions. Grid size is 1 x 64 x 64. Solving for 4 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 2, 0) (0, 0, 2) Cell volume = 4 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 0.5, -0) (0, -0, 0.5) Geometric objects: block, center = (0,0,0.5625) size (1e+20,1e+20,0.875) axes (1,0,0), (0,1,0), (0,0,1) block, center = (0,0,0) size (1e+20,0.3,0.25) axes (1,0,0), (0,1,0), (0,0,1) Geometric object tree has depth 2 and 24 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: . Initializing fields to random numbers... 11 k-points Vector3<0.1, 0.0, 0.0> Vector3<0.39, 0.0, 0.0> Vector3<0.68, 0.0, 0.0> Vector3<0.97, 0.0, 0.0> Vector3<1.26, 0.0, 0.0> Vector3<1.55, 0.0, 0.0> Vector3<1.84, 0.0, 0.0> Vector3<2.13, 0.0, 0.0> Vector3<2.42, 0.0, 0.0> Vector3<2.71, 0.0, 0.0> Vector3<3.0, 0.0, 0.0> elapsed time for initialization: 0.0170669555664 solve_kpoint (0.1,0,0): freqs:, k index, k1, k2, k3, kmag/2pi, band 1, band 2, band 3, band 4 Solving for bands 1 to 4... Finished solving for bands 1 to 4 after 41 iterations. freqs:, 1, 0.1, 0, 0, 0.1, 0.0807582, 0.0855765, 0.3147, 0.394675 elapsed time for k point: 0.997727870941 zparity:, 1, 0.991845764323, -0.999316577892, 0.926395271398, 0.734287985459 yparity:, 1, -0.999999994167, 0.999999994877, 0.999999317134, -0.999990343255 solve_kpoint (0.39,0,0): Solving for bands 1 to 4... Finished solving for bands 1 to 4 after 30 iterations. freqs:, 2, 0.39, 0, 0, 0.39, 0.305867, 0.318873, 0.435494, 0.471163 elapsed time for k point: 0.719265222549 zparity:, 2, 0.849797629053, -0.856208311583, 0.613504714457, 0.704049364345 yparity:, 2, -0.999999978241, 0.999999790163, 1.00000586834, -0.999935345259 solve_kpoint (0.68,0,0): Solving for bands 1 to 4... Finished solving for bands 1 to 4 after 33 iterations. freqs:, 3, 0.68, 0, 0, 0.68, 0.506676, 0.511416, 0.580115, 0.594058 elapsed time for k point: 0.798604011536 zparity:, 3, 0.643047109776, -0.513297056488, 0.749333227898, -0.517458139401 yparity:, 3, -1.00000924371, 0.999986730786, -0.999977348488, 0.999973952734 solve_kpoint (0.97,0,0): Solving for bands 1 to 4... Finished solving for bands 1 to 4 after 28 iterations. freqs:, 4, 0.97, 0, 0, 0.97, 0.629793, 0.64279, 0.724022, 0.741057 elapsed time for k point: 0.682886123657 zparity:, 4, 0.950559945676, -0.795378249422, 0.290959329597, -0.25994001915 yparity:, 4, -0.999975648561, 0.99997341981, -0.999995157307, 1.00000240214 solve_kpoint (1.26,0,0): Solving for bands 1 to 4... Finished solving for bands 1 to 4 after 53 iterations. freqs:, 5, 1.26, 0, 0, 1.26, 0.691833, 0.716391, 0.880207, 0.915146 elapsed time for k point: 1.27344799042 zparity:, 5, 0.989433203648, -0.941034559795, -0.905709752059, 0.125905116405 yparity:, 5, -0.999934195805, 0.999992049633, -0.999995714577, 1.00002144472 solve_kpoint (1.55,0,0): Solving for bands 1 to 4... Finished solving for bands 1 to 4 after 29 iterations. freqs:, 6, 1.55, 0, 0, 1.55, 0.750543, 0.778256, 0.948183, 1.0502 elapsed time for k point: 0.709416866302 zparity:, 6, 0.995326739506, -0.973076667004, -0.986247911215, 0.787849662325 yparity:, 6, -0.999907911974, 0.999996472511, -1.00000037749, 1.00017628212 solve_kpoint (1.84,0,0): Solving for bands 1 to 4... Finished solving for bands 1 to 4 after 32 iterations. freqs:, 7, 1.84, 0, 0, 1.84, 0.811564, 0.839559, 1.01283, 1.12995 elapsed time for k point: 0.784179925919 zparity:, 7, 0.99732410812, -0.984353627052, -0.992065694749, 0.943289222913 yparity:, 7, -0.999884349307, 0.999998717603, -1.00000422895, 1.00025129511 solve_kpoint (2.13,0,0): Solving for bands 1 to 4... Finished solving for bands 1 to 4 after 111 iterations. freqs:, 8, 2.13, 0, 0, 2.13, 0.875475, 0.902606, 1.07764, 1.18313 elapsed time for k point: 2.66694307327 zparity:, 8, 0.99824862905, -0.989579122305, -0.994248025411, -0.985837439536 yparity:, 8, -0.999863363609, 1.00000027727, -1.00000949462, -0.999844607751 solve_kpoint (2.42,0,0): Solving for bands 1 to 4... Finished solving for bands 1 to 4 after 22 iterations. freqs:, 9, 2.42, 0, 0, 2.42, 0.942027, 0.967822, 1.14317, 1.23602 elapsed time for k point: 0.544819116592 zparity:, 9, 0.998753086191, -0.992422557413, -0.995415920791, -0.990851025724 yparity:, 9, -0.999845914689, 1.00000151004, -1.00001600828, -0.999840967114 solve_kpoint (2.71,0,0): Solving for bands 1 to 4... Finished solving for bands 1 to 4 after 16 iterations. freqs:, 10, 2.71, 0, 0, 2.71, 1.01083, 1.03512, 1.20959, 1.29208 elapsed time for k point: 0.401695966721 zparity:, 10, 0.999058451884, -0.99413850546, -0.996144476211, -0.993490974655 yparity:, 10, -0.999833271898, 1.00000252462, -1.00002309233, -0.999834812139 solve_kpoint (3,0,0): Solving for bands 1 to 4... Finished solving for bands 1 to 4 after 16 iterations. freqs:, 11, 3, 0, 0, 3, 1.0815, 1.10429, 1.27693, 1.35105 elapsed time for k point: 0.397207021713 zparity:, 11, 0.999257350936, -0.995250798058, -0.996639608967, -0.995090516581 yparity:, 11, -0.999826481415, 1.0000033584, -1.00003015737, -0.999833155067 Band 1 range: 0.0807582053405 at Vector3<0.1, 0.0, 0.0> to 1.08149969321 at Vector3<3.0, 0.0, 0.0> Band 2 range: 0.0855765355013 at Vector3<0.1, 0.0, 0.0> to 1.10428530979 at Vector3<3.0, 0.0, 0.0> Band 3 range: 0.314699680033 at Vector3<0.1, 0.0, 0.0> to 1.27692880877 at Vector3<3.0, 0.0, 0.0> Band 4 range: 0.394674794346 at Vector3<0.1, 0.0, 0.0> to 1.35104977582 at Vector3<3.0, 0.0, 0.0> total elapsed time for run: 10.0013701916 done Initializing fields to random numbers... Initializing eigensolver data Computing 4 bands with 1e-12 tolerance Working in 3 dimensions. Grid size is 1 x 64 x 64. Solving for 4 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 2, 0) (0, 0, 2) Cell volume = 4 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 0.5, -0) (0, -0, 0.5) Geometric objects: block, center = (0,0,0.5625) size (1e+20,1e+20,0.875) axes (1,0,0), (0,1,0), (0,0,1) block, center = (0,0,0) size (1e+20,0.3,0.25) axes (1,0,0), (0,1,0), (0,0,1) Geometric object tree has depth 2 and 24 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: . Initializing fields to random numbers... 1 k-points Vector3<2.22580645161, 0.0, 0.0> elapsed time for initialization: 0.0169780254364 solve_kpoint (2.22581,0,0): freqs:, k index, k1, k2, k3, kmag/2pi, band 1, band 2, band 3, band 4 Solving for bands 1 to 4... Finished solving for bands 1 to 4 after 53 iterations. freqs:, 1, 2.22581, 0, 0, 2.22581, 0.897189, 0.92391, 1.0992, 1.20025 elapsed time for k point: 1.30312395096 total elapsed time for run: 1.32041287422 done find-k 4 at 2.22580645161: 0.555084522615 Initializing eigensolver data Computing 4 bands with 1e-12 tolerance Working in 3 dimensions. Grid size is 1 x 64 x 64. Solving for 4 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 2, 0) (0, 0, 2) Cell volume = 4 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 0.5, -0) (0, -0, 0.5) Geometric objects: block, center = (0,0,0.5625) size (1e+20,1e+20,0.875) axes (1,0,0), (0,1,0), (0,0,1) block, center = (0,0,0) size (1e+20,0.3,0.25) axes (1,0,0), (0,1,0), (0,0,1) Geometric object tree has depth 2 and 24 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: . Initializing fields to random numbers... 1 k-points Vector3<0.0645161290323, 0.0, 0.0> elapsed time for initialization: 0.0169250965118 solve_kpoint (0.0645161,0,0): freqs:, k index, k1, k2, k3, kmag/2pi, band 1, band 2, band 3, band 4 Solving for bands 1 to 4... Finished solving for bands 1 to 4 after 42 iterations. freqs:, 1, 0.0645161, 0, 0, 0.0645161, 0.05217, 0.055309, 0.308728, 0.391146 elapsed time for k point: 1.01876187325 total elapsed time for run: 1.03595709801 done find-k 4 at 0.0645161290323: -0.2540155697 Initializing eigensolver data Computing 4 bands with 1e-12 tolerance Working in 3 dimensions. Grid size is 1 x 64 x 64. Solving for 4 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 2, 0) (0, 0, 2) Cell volume = 4 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 0.5, -0) (0, -0, 0.5) Geometric objects: block, center = (0,0,0.5625) size (1e+20,1e+20,0.875) axes (1,0,0), (0,1,0), (0,0,1) block, center = (0,0,0) size (1e+20,0.3,0.25) axes (1,0,0), (0,1,0), (0,0,1) Geometric object tree has depth 2 and 24 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: . Initializing fields to random numbers... 1 k-points Vector3<2.58064516129, 0.0, 0.0> elapsed time for initialization: 0.0171430110931 solve_kpoint (2.58065,0,0): freqs:, k index, k1, k2, k3, kmag/2pi, band 1, band 2, band 3, band 4 Solving for bands 1 to 4... Finished solving for bands 1 to 4 after 46 iterations. freqs:, 1, 2.58065, 0, 0, 2.58065, 0.979885, 1.00486, 1.17985, 1.26669 elapsed time for k point: 1.11497807503 total elapsed time for run: 1.13237905502 done find-k 4 at 2.58064516129: 0.621532505066 Initializing eigensolver data Computing 4 bands with 1e-12 tolerance Working in 3 dimensions. Grid size is 1 x 64 x 64. Solving for 4 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 2, 0) (0, 0, 2) Cell volume = 4 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 0.5, -0) (0, -0, 0.5) Geometric objects: block, center = (0,0,0.5625) size (1e+20,1e+20,0.875) axes (1,0,0), (0,1,0), (0,0,1) block, center = (0,0,0) size (1e+20,0.3,0.25) axes (1,0,0), (0,1,0), (0,0,1) Geometric object tree has depth 2 and 24 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: . Initializing fields to random numbers... 1 k-points Vector3<1.32258064516, 0.0, 0.0> elapsed time for initialization: 0.0170469284058 solve_kpoint (1.32258,0,0): freqs:, k index, k1, k2, k3, kmag/2pi, band 1, band 2, band 3, band 4 Solving for bands 1 to 4... Finished solving for bands 1 to 4 after 67 iterations. freqs:, 1, 1.32258, 0, 0, 1.32258, 0.70442, 0.730073, 0.895938, 0.950718 elapsed time for k point: 1.57052397728 total elapsed time for run: 1.58783388138 done find-k 4 at 1.32258064516: 0.305556312378 Initializing eigensolver data Computing 4 bands with 1e-12 tolerance Working in 3 dimensions. Grid size is 1 x 64 x 64. Solving for 4 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 2, 0) (0, 0, 2) Cell volume = 4 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 0.5, -0) (0, -0, 0.5) Geometric objects: block, center = (0,0,0.5625) size (1e+20,1e+20,0.875) axes (1,0,0), (0,1,0), (0,0,1) block, center = (0,0,0) size (1e+20,0.3,0.25) axes (1,0,0), (0,1,0), (0,0,1) Geometric object tree has depth 2 and 24 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: . Initializing fields to random numbers... 1 k-points Vector3<0.764214546918, 0.0, 0.0> elapsed time for initialization: 0.0170760154724 solve_kpoint (0.764215,0,0): freqs:, k index, k1, k2, k3, kmag/2pi, band 1, band 2, band 3, band 4 Solving for bands 1 to 4... Finished solving for bands 1 to 4 after 41 iterations. freqs:, 1, 0.764215, 0, 0, 0.764215, 0.556038, 0.558219, 0.612015, 0.633507 elapsed time for k point: 0.962731838226 total elapsed time for run: 0.980062961578 done find-k 4 at 0.764214546918: -0.011654653788 Initializing eigensolver data Computing 4 bands with 1e-12 tolerance Working in 3 dimensions. Grid size is 1 x 64 x 64. Solving for 4 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 2, 0) (0, 0, 2) Cell volume = 4 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 0.5, -0) (0, -0, 0.5) Geometric objects: block, center = (0,0,0.5625) size (1e+20,1e+20,0.875) axes (1,0,0), (0,1,0), (0,0,1) block, center = (0,0,0) size (1e+20,0.3,0.25) axes (1,0,0), (0,1,0), (0,0,1) Geometric object tree has depth 2 and 24 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: . Initializing fields to random numbers... 1 k-points Vector3<0.789000236674, 0.0, 0.0> elapsed time for initialization: 0.0166609287262 solve_kpoint (0.789,0,0): freqs:, k index, k1, k2, k3, kmag/2pi, band 1, band 2, band 3, band 4 Solving for bands 1 to 4... Finished solving for bands 1 to 4 after 41 iterations. freqs:, 1, 0.789, 0, 0, 0.789, 0.56861, 0.570789, 0.622618, 0.645257 elapsed time for k point: 0.929583072662 total elapsed time for run: 0.946494102478 done find-k 4 at 0.789000236674: 9.52760944106e-05 find-k 3 at 0.789000236674: -0.0225429396421 (cached) find-k 3 at 0.0645161290323: -0.336433648931 (cached) find-k 3 at 2.58064516129: 0.534691335144 (cached) Initializing eigensolver data Computing 3 bands with 1e-12 tolerance Working in 3 dimensions. Grid size is 1 x 64 x 64. Solving for 3 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 2, 0) (0, 0, 2) Cell volume = 4 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 0.5, -0) (0, -0, 0.5) Geometric objects: block, center = (0,0,0.5625) size (1e+20,1e+20,0.875) axes (1,0,0), (0,1,0), (0,0,1) block, center = (0,0,0) size (1e+20,0.3,0.25) axes (1,0,0), (0,1,0), (0,0,1) Geometric object tree has depth 2 and 24 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: . Initializing fields to random numbers... 1 k-points Vector3<0.839636493413, 0.0, 0.0> elapsed time for initialization: 0.0151131153107 solve_kpoint (0.839636,0,0): freqs:, k index, k1, k2, k3, kmag/2pi, band 1, band 2, band 3 Solving for bands 1 to 3... Finished solving for bands 1 to 3 after 39 iterations. freqs:, 1, 0.839636, 0, 0, 0.839636, 0.590583, 0.594418, 0.647157 elapsed time for k point: 0.601430892944 total elapsed time for run: 0.616811990738 done find-k 3 at 0.839636493413: 0.00199552624961 Initializing eigensolver data Computing 3 bands with 1e-12 tolerance Working in 3 dimensions. Grid size is 1 x 64 x 64. Solving for 3 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 2, 0) (0, 0, 2) Cell volume = 4 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 0.5, -0) (0, -0, 0.5) Geometric objects: block, center = (0,0,0.5625) size (1e+20,1e+20,0.875) axes (1,0,0), (0,1,0), (0,0,1) block, center = (0,0,0) size (1e+20,0.3,0.25) axes (1,0,0), (0,1,0), (0,0,1) Geometric object tree has depth 2 and 24 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: . Initializing fields to random numbers... 1 k-points Vector3<0.835826416059, 0.0, 0.0> elapsed time for initialization: 0.015291929245 solve_kpoint (0.835826,0,0): freqs:, k index, k1, k2, k3, kmag/2pi, band 1, band 2, band 3 Solving for bands 1 to 3... Finished solving for bands 1 to 3 after 39 iterations. freqs:, 1, 0.835826, 0, 0, 0.835826, 0.589103, 0.59274, 0.645172 elapsed time for k point: 0.606141090393 total elapsed time for run: 0.6216609478 done find-k 3 at 0.835826416059: 1.06975429137e-05 find-k 2 at 0.835826416059: -0.0524213315718 (cached) find-k 2 at 0.0645161290323: -0.589852340034 (cached) find-k 2 at 2.58064516129: 0.359697149718 (cached) Initializing eigensolver data Computing 2 bands with 1e-12 tolerance Working in 3 dimensions. Grid size is 1 x 64 x 64. Solving for 2 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 2, 0) (0, 0, 2) Cell volume = 4 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 0.5, -0) (0, -0, 0.5) Geometric objects: block, center = (0,0,0.5625) size (1e+20,1e+20,0.875) axes (1,0,0), (0,1,0), (0,0,1) block, center = (0,0,0) size (1e+20,0.3,0.25) axes (1,0,0), (0,1,0), (0,0,1) Geometric object tree has depth 2 and 24 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: . Initializing fields to random numbers... 1 k-points Vector3<0.954259874649, 0.0, 0.0> elapsed time for initialization: 0.0137100219727 solve_kpoint (0.95426,0,0): freqs:, k index, k1, k2, k3, kmag/2pi, band 1, band 2 Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 30 iterations. freqs:, 1, 0.95426, 0, 0, 0.95426, 0.62585, 0.637763 elapsed time for k point: 0.338364839554 total elapsed time for run: 0.352303981781 done find-k 2 at 0.954259874649: -0.00739874518847 Initializing eigensolver data Computing 2 bands with 1e-12 tolerance Working in 3 dimensions. Grid size is 1 x 64 x 64. Solving for 2 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 2, 0) (0, 0, 2) Cell volume = 4 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 0.5, -0) (0, -0, 0.5) Geometric objects: block, center = (0,0,0.5625) size (1e+20,1e+20,0.875) axes (1,0,0), (0,1,0), (0,0,1) block, center = (0,0,0) size (1e+20,0.3,0.25) axes (1,0,0), (0,1,0), (0,0,1) Geometric object tree has depth 2 and 24 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: . Initializing fields to random numbers... 1 k-points Vector3<0.977006296664, 0.0, 0.0> elapsed time for initialization: 0.0138101577759 solve_kpoint (0.977006,0,0): freqs:, k index, k1, k2, k3, kmag/2pi, band 1, band 2 Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 29 iterations. freqs:, 1, 0.977006, 0, 0, 0.977006, 0.631507, 0.644971 elapsed time for k point: 0.326809883118 total elapsed time for run: 0.340842962265 done find-k 2 at 0.977006296664: -0.000190225578047 find-k 1 at 2.22580645161: 0.252027371793 (cached) find-k 1 at 0.0645161290323: -0.592991247363 (cached) find-k 1 at 2.58064516129: 0.334723526239 (cached) Initializing eigensolver data Computing 1 bands with 1e-12 tolerance Working in 3 dimensions. Grid size is 1 x 64 x 64. Solving for 1 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 2, 0) (0, 0, 2) Cell volume = 4 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 0.5, -0) (0, -0, 0.5) Geometric objects: block, center = (0,0,0.5625) size (1e+20,1e+20,0.875) axes (1,0,0), (0,1,0), (0,0,1) block, center = (0,0,0) size (1e+20,0.3,0.25) axes (1,0,0), (0,1,0), (0,0,1) Geometric object tree has depth 2 and 24 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: . Initializing fields to random numbers... 1 k-points Vector3<1.1208817714, 0.0, 0.0> elapsed time for initialization: 0.0123388767242 solve_kpoint (1.12088,0,0): freqs:, k index, k1, k2, k3, kmag/2pi, band 1 Solving for bands 1 to 1... Finished solving for bands 1 to 1 after 31 iterations. freqs:, 1, 1.12088, 0, 0, 1.12088, 0.663439 elapsed time for k point: 0.169100046158 total elapsed time for run: 0.181653022766 done find-k 1 at 1.1208817714: 0.0182778920892 Initializing eigensolver data Computing 1 bands with 1e-12 tolerance Working in 3 dimensions. Grid size is 1 x 64 x 64. Solving for 1 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 2, 0) (0, 0, 2) Cell volume = 4 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 0.5, -0) (0, -0, 0.5) Geometric objects: block, center = (0,0,0.5625) size (1e+20,1e+20,0.875) axes (1,0,0), (0,1,0), (0,0,1) block, center = (0,0,0) size (1e+20,0.3,0.25) axes (1,0,0), (0,1,0), (0,0,1) Geometric object tree has depth 2 and 24 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: . Initializing fields to random numbers... 1 k-points Vector3<1.03334852826, 0.0, 0.0> elapsed time for initialization: 0.0122110843658 solve_kpoint (1.03335,0,0): freqs:, k index, k1, k2, k3, kmag/2pi, band 1 Solving for bands 1 to 1... Finished solving for bands 1 to 1 after 33 iterations. freqs:, 1, 1.03335, 0, 0, 1.03335, 0.644604 elapsed time for k point: 0.176466941833 total elapsed time for run: 0.188879966736 done find-k 1 at 1.03334852826: -0.000557634136478 Initializing eigensolver data Computing 1 bands with 1e-12 tolerance Working in 3 dimensions. Grid size is 1 x 64 x 64. Solving for 1 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 2, 0) (0, 0, 2) Cell volume = 4 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 0.5, -0) (0, -0, 0.5) Geometric objects: block, center = (0,0,0.5625) size (1e+20,1e+20,0.875) axes (1,0,0), (0,1,0), (0,0,1) block, center = (0,0,0) size (1e+20,0.3,0.25) axes (1,0,0), (0,1,0), (0,0,1) Geometric object tree has depth 2 and 24 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: . Initializing fields to random numbers... 1 k-points Vector3<1.03584152004, 0.0, 0.0> elapsed time for initialization: 0.0122671127319 solve_kpoint (1.03584,0,0): freqs:, k index, k1, k2, k3, kmag/2pi, band 1 Solving for bands 1 to 1... Finished solving for bands 1 to 1 after 33 iterations. freqs:, 1, 1.03584, 0, 0, 1.03584, 0.645161 elapsed time for k point: 0.17883515358 total elapsed time for run: 0.191307067871 done find-k 1 at 1.03584152004: -7.84240499208e-07 Initializing eigensolver data Computing 4 bands with 1e-12 tolerance Working in 3 dimensions. Grid size is 1 x 64 x 64. Solving for 4 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 2, 0) (0, 0, 2) Cell volume = 4 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 0.5, -0) (0, -0, 0.5) Geometric objects: block, center = (0,0,0.5625) size (1e+20,1e+20,0.875) axes (1,0,0), (0,1,0), (0,0,1) block, center = (0,0,0) size (1e+20,0.3,0.25) axes (1,0,0), (0,1,0), (0,0,1) Geometric object tree has depth 2 and 24 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: . Initializing fields to random numbers... 1 k-points Vector3<1.03584503596, 0.0, 0.0> elapsed time for initialization: 0.0164659023285 solve_kpoint (1.03585,0,0): freqs:, k index, k1, k2, k3, kmag/2pi, band 1, band 2, band 3, band 4 Solving for bands 1 to 4... Finished solving for bands 1 to 4 after 42 iterations. freqs:, 1, 1.03585, 0, 0, 1.03585, 0.645161, 0.662112, 0.765915, 0.77985 elapsed time for k point: 0.97053694725 Outputting fields to test_strip-flux.v.k01.b04.x.h5... yparity:, 1, -0.999961745053, 0.999981352697, -0.999996484397, 1.00000240523 velocity:, 1, Vector3<0.223053364007, -1.65971418147e-05, -4.43949571853e-07>, Vector3<0.275781519108, -2.29679616212e-08, 2.48574079429e-06>, Vector3<0.640344418656, -8.89447691177e-07, 2.70293814606e-08>, Vector3<0.598378122761, 6.79883230286e-07, 7.0049006738e-07> total elapsed time for run: 1.24773097038 done Initializing eigensolver data Computing 3 bands with 1e-12 tolerance Working in 3 dimensions. Grid size is 1 x 64 x 64. Solving for 3 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 2, 0) (0, 0, 2) Cell volume = 4 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 0.5, -0) (0, -0, 0.5) Geometric objects: block, center = (0,0,0.5625) size (1e+20,1e+20,0.875) axes (1,0,0), (0,1,0), (0,0,1) block, center = (0,0,0) size (1e+20,0.3,0.25) axes (1,0,0), (0,1,0), (0,0,1) Geometric object tree has depth 2 and 24 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: . Initializing fields to random numbers... 1 k-points Vector3<0.977622101449, 0.0, 0.0> elapsed time for initialization: 0.0152308940887 solve_kpoint (0.977622,0,0): freqs:, k index, k1, k2, k3, kmag/2pi, band 1, band 2, band 3 Solving for bands 1 to 3... Finished solving for bands 1 to 3 after 42 iterations. freqs:, 1, 0.977622, 0, 0, 0.977622, 0.631657, 0.645161, 0.728827 elapsed time for k point: 0.645817995071 Outputting fields to test_strip-flux.v.k01.b03.x.h5... yparity:, 1, -0.999973901721, 0.99997467296, -0.999995585369 velocity:, 1, Vector3<0.242791049683, -1.510429774e-05, -4.45845754544e-07>, Vector3<0.308492291467, -2.80824727514e-07, 2.21219664407e-06>, Vector3<0.631455897551, -1.15170017682e-06, -2.4920645551e-08> total elapsed time for run: 0.940046072006 done Initializing eigensolver data Computing 2 bands with 1e-12 tolerance Working in 3 dimensions. Grid size is 1 x 64 x 64. Solving for 2 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 2, 0) (0, 0, 2) Cell volume = 4 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 0.5, -0) (0, -0, 0.5) Geometric objects: block, center = (0,0,0.5625) size (1e+20,1e+20,0.875) axes (1,0,0), (0,1,0), (0,0,1) block, center = (0,0,0) size (1e+20,0.3,0.25) axes (1,0,0), (0,1,0), (0,0,1) Geometric object tree has depth 2 and 24 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: . Initializing fields to random numbers... 1 k-points Vector3<0.835805768998, 0.0, 0.0> elapsed time for initialization: 0.0137670040131 solve_kpoint (0.835806,0,0): freqs:, k index, k1, k2, k3, kmag/2pi, band 1, band 2 Solving for bands 1 to 2... Finished solving for bands 1 to 2 after 32 iterations. freqs:, 1, 0.835806, 0, 0, 0.835806, 0.589095, 0.592731 elapsed time for k point: 0.358953952789 Outputting fields to test_strip-flux.v.k01.b02.x.h5... yparity:, 1, -1.00004875683, 0.999921187918 velocity:, 1, Vector3<0.392057598298, -1.00894907182e-05, -2.19751683028e-07>, Vector3<0.442646171767, 3.82713625908e-07, 1.06153350775e-06> total elapsed time for run: 0.620460987091 done Initializing eigensolver data Computing 1 bands with 1e-12 tolerance Working in 3 dimensions. Grid size is 1 x 64 x 64. Solving for 1 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 2, 0) (0, 0, 2) Cell volume = 4 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 0.5, -0) (0, -0, 0.5) Geometric objects: block, center = (0,0,0.5625) size (1e+20,1e+20,0.875) axes (1,0,0), (0,1,0), (0,0,1) block, center = (0,0,0) size (1e+20,0.3,0.25) axes (1,0,0), (0,1,0), (0,0,1) Geometric object tree has depth 2 and 24 object nodes (vs. 2 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: . Initializing fields to random numbers... 1 k-points Vector3<0.788801145908, 0.0, 0.0> elapsed time for initialization: 0.0122549533844 solve_kpoint (0.788801,0,0): freqs:, k index, k1, k2, k3, kmag/2pi, band 1 Solving for bands 1 to 1... Finished solving for bands 1 to 1 after 56 iterations. freqs:, 1, 0.788801, 0, 0, 0.788801, 0.568514 .elapsed time for k point: 0.299783945084 Outputting fields to test_strip-flux.v.k01.b01.x.h5... yparity:, 1, -1.00007453249 velocity:, 1, Vector3<0.484362020207, -1.008407132e-05, -1.43904079203e-07> total elapsed time for run: 0.587284088135 done kvals:, 0.645161290323, 1, 4, 0.0, 0.0, 0.0, 1.0, 0.0, 0.0, 1.03584503596, 0.977622101449, 0.835805768998, 0.788801145908 test_strip: 22.96s test_subpixel_averaging ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (1, 0, 0) (0, 1, 0) (0, 0, 1) Cell volume = 1 Reciprocal lattice vectors (/ 2 pi): (1, -0, 0) (-0, 1, -0) (0, -0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.1, 0.0, 0.0> Vector3<0.2, 0.0, 0.0> Vector3<0.3, 0.0, 0.0> Vector3<0.4, 0.0, 0.0> Vector3<0.5, 0.0, 0.0> Vector3<0.5, 0.1, 0.0> Vector3<0.5, 0.2, 0.0> Vector3<0.5, 0.3, 0.0> Vector3<0.5, 0.4, 0.0> Vector3<0.5, 0.5, 0.0> Vector3<0.4, 0.4, 0.0> Vector3<0.3, 0.3, 0.0> Vector3<0.2, 0.2, 0.0> Vector3<0.1, 0.1, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00621700286865 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 52 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.446974039078 solve_kpoint (0.1,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 120 iterations. tefreqs:, 2, 0.1, 0, 0, 0.1, 0.0897332, 0.551138, 0.7616, 0.774682, 0.907199, 1.00188, 1.00357, 1.10209 elapsed time for k point: 1.29944801331 solve_kpoint (0.2,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 3, 0.2, 0, 0, 0.2, 0.178692, 0.544896, 0.728534, 0.778528, 0.880244, 1.00699, 1.01696, 1.10027 elapsed time for k point: 0.292507886887 solve_kpoint (0.3,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 4, 0.3, 0, 0, 0.3, 0.265798, 0.528176, 0.685449, 0.783377, 0.860714, 1.01515, 1.03843, 1.09664 elapsed time for k point: 0.263514995575 solve_kpoint (0.4,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 5, 0.4, 0, 0, 0.4, 0.348956, 0.490738, 0.652797, 0.787382, 0.849999, 1.02443, 1.06441, 1.09121 elapsed time for k point: 0.304244995117 solve_kpoint (0.5,0,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 40 iterations. tefreqs:, 6, 0.5, 0, 0, 0.5, 0.412791, 0.441588, 0.641998, 0.788933, 0.846588, 1.02916, 1.08607, 1.08787 elapsed time for k point: 0.432824134827 solve_kpoint (0.5,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 7, 0.5, 0.1, 0, 0.509902, 0.423741, 0.445781, 0.63823, 0.793147, 0.842943, 0.986523, 1.05018, 1.10383 elapsed time for k point: 0.356840133667 solve_kpoint (0.5,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 8, 0.5, 0.2, 0, 0.538516, 0.454781, 0.457434, 0.627898, 0.805254, 0.826101, 0.927945, 1.00456, 1.10879 elapsed time for k point: 0.313180923462 solve_kpoint (0.5,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 9, 0.5, 0.3, 0, 0.583095, 0.473767, 0.501279, 0.61358, 0.781467, 0.824181, 0.894949, 0.959051, 1.1107 elapsed time for k point: 0.267971038818 solve_kpoint (0.5,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 10, 0.5, 0.4, 0, 0.640312, 0.489649, 0.556045, 0.59957, 0.719611, 0.849247, 0.884337, 0.917168, 1.11162 elapsed time for k point: 0.253434896469 solve_kpoint (0.5,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 11, 0.5, 0.5, 0, 0.707107, 0.496836, 0.593141, 0.593154, 0.679169, 0.878684, 0.881977, 0.881982, 1.11192 elapsed time for k point: 0.250562906265 solve_kpoint (0.4,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tefreqs:, 12, 0.4, 0.4, 0, 0.565685, 0.470987, 0.546003, 0.606732, 0.743602, 0.839223, 0.882254, 0.93697, 1.11121 elapsed time for k point: 0.198971986771 solve_kpoint (0.3,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 13, 0.3, 0.3, 0, 0.424264, 0.372435, 0.536186, 0.644572, 0.809689, 0.825804, 0.883642, 1.0102, 1.10725 elapsed time for k point: 0.231758832932 solve_kpoint (0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 14, 0.2, 0.2, 0, 0.282843, 0.252088, 0.542887, 0.698081, 0.789371, 0.888483, 0.897858, 1.07884, 1.09039 elapsed time for k point: 0.315992832184 solve_kpoint (0.1,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 34 iterations. tefreqs:, 15, 0.1, 0.1, 0, 0.141421, 0.126841, 0.549908, 0.750378, 0.777261, 0.903059, 0.961984, 1.04191, 1.10004 elapsed time for k point: 0.366902112961 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 93 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.552709, 0.773227, 0.77323, 0.922997, 1.00017, 1.00017, 1.09282 elapsed time for k point: 0.784347057343 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.496835864745 at Vector3<0.5, 0.5, 0.0> Band 2 range: 0.441588449723 at Vector3<0.5, 0.0, 0.0> to 0.593140514116 at Vector3<0.5, 0.5, 0.0> Band 3 range: 0.593153586312 at Vector3<0.5, 0.5, 0.0> to 0.773226559307 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.679169013076 at Vector3<0.5, 0.5, 0.0> to 0.809689155168 at Vector3<0.3, 0.3, 0.0> Band 5 range: 0.82418144435 at Vector3<0.5, 0.3, 0.0> to 0.922996519586 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.881977091666 at Vector3<0.5, 0.5, 0.0> to 1.02915970506 at Vector3<0.5, 0.0, 0.0> Band 7 range: 0.881981813442 at Vector3<0.5, 0.5, 0.0> to 1.08607293237 at Vector3<0.5, 0.0, 0.0> Band 8 range: 1.08786896351 at Vector3<0.5, 0.0, 0.0> to 1.11191737076 at Vector3<0.5, 0.5, 0.0> Gap from band 2 (0.593140514116) to band 3 (0.593153586312), 0.00220387097771% Gap from band 4 (0.809689155168) to band 5 (0.82418144435), 1.77398249124% Gap from band 7 (1.08607293237) to band 8 (1.08786896351), 0.165232671622% total elapsed time for run: 6.38940405846 done epsilon: 1-12, mean 2.38229, harm. mean 1.1448, 14.5508% > 1, 12.5663% "fill" .Outputting test_subpixel_averaging-epsilon.h5... test_subpixel_averaging: 6.45s test_tri_holes ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (0.866025, 0.5, 0) (0.866025, -0.5, 0) (0, 0, 1) Cell volume = 0.866025 Reciprocal lattice vectors (/ 2 pi): (0.57735, 1, -0) (0.57735, -1, 0) (-0, 0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.45, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 3 and 16 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.0, 0.1, 0.0> Vector3<0.0, 0.2, 0.0> Vector3<0.0, 0.3, 0.0> Vector3<0.0, 0.4, 0.0> Vector3<0.0, 0.5, 0.0> Vector3<-0.0666666666667, 0.466666666667, 0.0> Vector3<-0.133333333333, 0.433333333333, 0.0> Vector3<-0.2, 0.4, 0.0> Vector3<-0.266666666667, 0.366666666667, 0.0> Vector3<-0.333333333333, 0.333333333333, 0.0> Vector3<-0.266666666667, 0.266666666667, 0.0> Vector3<-0.2, 0.2, 0.0> Vector3<-0.133333333333, 0.133333333333, 0.0> Vector3<-0.0666666666667, 0.0666666666667, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00874900817871 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 56 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.656836, 0.715623, 0.716068, 0.738377, 0.825979, 0.827163, 1.04116 elapsed time for k point: 0.472330093384 solve_kpoint (0,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 51 iterations. tefreqs:, 2, 0, 0.1, 0, 0.11547, 0.0694821, 0.652351, 0.679959, 0.706966, 0.760813, 0.839484, 0.84298, 1.03546 elapsed time for k point: 0.545956134796 solve_kpoint (0,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 3, 0, 0.2, 0, 0.23094, 0.137272, 0.615214, 0.658316, 0.688898, 0.777327, 0.869983, 0.879951, 1.02022 elapsed time for k point: 0.306970119476 solve_kpoint (0,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 27 iterations. tefreqs:, 4, 0, 0.3, 0, 0.34641, 0.200458, 0.560713, 0.652934, 0.672026, 0.788475, 0.905474, 0.920288, 1.00658 elapsed time for k point: 0.30406999588 solve_kpoint (0,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 30 iterations. tefreqs:, 5, 0, 0.4, 0, 0.46188, 0.251902, 0.513413, 0.649737, 0.660743, 0.79604, 0.93646, 0.952374, 1.00191 elapsed time for k point: 0.328186988831 solve_kpoint (0,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 35 iterations. tefreqs:, 6, 0, 0.5, 0, 0.57735, 0.274155, 0.492434, 0.648615, 0.656803, 0.798817, 0.949956, 0.963485, 1.00797 elapsed time for k point: 0.392184019089 solve_kpoint (-0.0666667,0.466667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 28 iterations. tefreqs:, 7, -0.0666667, 0.466667, 0, 0.581187, 0.276103, 0.493884, 0.623964, 0.680084, 0.79654, 0.952442, 0.963435, 1.00796 elapsed time for k point: 0.312433958054 solve_kpoint (-0.133333,0.433333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 31 iterations. tefreqs:, 8, -0.133333, 0.433333, 0, 0.592546, 0.281494, 0.498189, 0.595471, 0.70467, 0.790197, 0.959226, 0.963379, 1.00792 elapsed time for k point: 0.340038061142 solve_kpoint (-0.2,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 31 iterations. tefreqs:, 9, -0.2, 0.4, 0, 0.61101, 0.288945, 0.505245, 0.568143, 0.726282, 0.780907, 0.962873, 0.969263, 1.00805 elapsed time for k point: 0.335145950317 solve_kpoint (-0.266667,0.366667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 32 iterations. tefreqs:, 10, -0.266667, 0.366667, 0, 0.635959, 0.29604, 0.514888, 0.544209, 0.744263, 0.76985, 0.962861, 0.978949, 1.00946 elapsed time for k point: 0.345464944839 solve_kpoint (-0.333333,0.333333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 54 iterations. tefreqs:, 11, -0.333333, 0.333333, 0, 0.666667, 0.299305, 0.526635, 0.526971, 0.757838, 0.758439, 0.962922, 0.983456, 1.01518 elapsed time for k point: 0.59606218338 solve_kpoint (-0.266667,0.266667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 12, -0.266667, 0.266667, 0, 0.533333, 0.280656, 0.522942, 0.556626, 0.735071, 0.77423, 0.95812, 0.968138, 0.99842 elapsed time for k point: 0.325938940048 solve_kpoint (-0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 26 iterations. tefreqs:, 13, -0.2, 0.2, 0, 0.4, 0.227959, 0.557659, 0.592002, 0.715363, 0.778635, 0.930406, 0.931674, 1.00032 elapsed time for k point: 0.300325155258 solve_kpoint (-0.133333,0.133333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 25 iterations. tefreqs:, 14, -0.133333, 0.133333, 0, 0.266667, 0.157628, 0.611565, 0.627491, 0.703542, 0.775273, 0.887377, 0.887503, 1.01567 elapsed time for k point: 0.289253950119 solve_kpoint (-0.0666667,0.0666667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 31 iterations. tefreqs:, 15, -0.0666667, 0.0666667, 0, 0.133333, 0.0801245, 0.65125, 0.670687, 0.706804, 0.763085, 0.844811, 0.846761, 1.03423 elapsed time for k point: 0.35701584816 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 109 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.656836, 0.715623, 0.716068, 0.738377, 0.825979, 0.827163, 1.04116 elapsed time for k point: 0.977343797684 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.299304947312 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 2 range: 0.492434282362 at Vector3<0.0, 0.5, 0.0> to 0.65683626835 at Vector3<0.0, 0.0, 0.0> Band 3 range: 0.526971050645 at Vector3<-0.333333333333, 0.333333333333, 0.0> to 0.715623220021 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.656803142745 at Vector3<0.0, 0.5, 0.0> to 0.75783822175 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 5 range: 0.738377430375 at Vector3<0.0, 0.0, 0.0> to 0.79881687928 at Vector3<0.0, 0.5, 0.0> Band 6 range: 0.82597871647 at Vector3<0.0, 0.0, 0.0> to 0.962921544101 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 7 range: 0.827163453884 at Vector3<0.0, 0.0, 0.0> to 0.983456330353 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 8 range: 0.998420061184 at Vector3<-0.266666666667, 0.266666666667, 0.0> to 1.04115512521 at Vector3<0.0, 0.0, 0.0> Gap from band 1 (0.299304947312) to band 2 (0.492434282362), 48.7860971926% Gap from band 5 (0.79881687928) to band 6 (0.82597871647), 3.34341590548% Gap from band 7 (0.983456330353) to band 8 (0.998420061184), 1.51005692332% total elapsed time for run: 6.54127192497 done Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (0.866025, 0.5, 0) (0.866025, -0.5, 0) (0, 0, 1) Cell volume = 0.866025 Reciprocal lattice vectors (/ 2 pi): (0.57735, 1, -0) (0.57735, -1, 0) (-0, 0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.45, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 3 and 16 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.0, 0.1, 0.0> Vector3<0.0, 0.2, 0.0> Vector3<0.0, 0.3, 0.0> Vector3<0.0, 0.4, 0.0> Vector3<0.0, 0.5, 0.0> Vector3<-0.0666666666667, 0.466666666667, 0.0> Vector3<-0.133333333333, 0.433333333333, 0.0> Vector3<-0.2, 0.4, 0.0> Vector3<-0.266666666667, 0.366666666667, 0.0> Vector3<-0.333333333333, 0.333333333333, 0.0> Vector3<-0.266666666667, 0.266666666667, 0.0> Vector3<-0.2, 0.2, 0.0> Vector3<-0.133333333333, 0.133333333333, 0.0> Vector3<-0.0666666666667, 0.0666666666667, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00875401496887 solve_kpoint (0,0,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1, tm band 2, tm band 3, tm band 4, tm band 5, tm band 6, tm band 7, tm band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 31 iterations. tmfreqs:, 1, 0, 0, 0, 0, 0, 0.398513, 0.492888, 0.493368, 0.682486, 0.682532, 0.692015, 0.898224 elapsed time for k point: 0.280013084412 solve_kpoint (0,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 20 iterations. tmfreqs:, 2, 0, 0.1, 0, 0.11547, 0.0581198, 0.391139, 0.491701, 0.498714, 0.658377, 0.683973, 0.717136, 0.879138 elapsed time for k point: 0.23291015625 solve_kpoint (0,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 16 iterations. tmfreqs:, 3, 0, 0.2, 0, 0.23094, 0.114967, 0.372435, 0.488376, 0.510297, 0.634188, 0.687769, 0.745313, 0.845031 elapsed time for k point: 0.185851812363 solve_kpoint (0,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 14 iterations. tmfreqs:, 4, 0, 0.3, 0, 0.34641, 0.169005, 0.346637, 0.484408, 0.520098, 0.618254, 0.692346, 0.770438, 0.813964 elapsed time for k point: 0.164618968964 solve_kpoint (0,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 5, 0, 0.4, 0, 0.46188, 0.217539, 0.316063, 0.481302, 0.523954, 0.612544, 0.695969, 0.784104, 0.798008 elapsed time for k point: 0.153794765472 solve_kpoint (0,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 15 iterations. tmfreqs:, 6, 0, 0.5, 0, 0.57735, 0.246221, 0.2936, 0.480139, 0.524322, 0.612077, 0.697337, 0.77948, 0.802954 elapsed time for k point: 0.175326824188 solve_kpoint (-0.0666667,0.466667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 14 iterations. tmfreqs:, 7, -0.0666667, 0.466667, 0, 0.581187, 0.247714, 0.293902, 0.474174, 0.530395, 0.610517, 0.697722, 0.778384, 0.803945 elapsed time for k point: 0.164350986481 solve_kpoint (-0.133333,0.433333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 15 iterations. tmfreqs:, 8, -0.133333, 0.433333, 0, 0.592546, 0.252117, 0.294341, 0.462144, 0.543033, 0.606057, 0.698701, 0.775411, 0.806864 elapsed time for k point: 0.176353931427 solve_kpoint (-0.2,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 15 iterations. tmfreqs:, 9, -0.2, 0.4, 0, 0.61101, 0.259212, 0.293544, 0.450321, 0.556823, 0.599242, 0.699858, 0.771489, 0.811554 elapsed time for k point: 0.175539970398 solve_kpoint (-0.266667,0.366667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 16 iterations. tmfreqs:, 10, -0.266667, 0.366667, 0, 0.635959, 0.268674, 0.289451, 0.441996, 0.569747, 0.590701, 0.700763, 0.768006, 0.817777 elapsed time for k point: 0.186239957809 solve_kpoint (-0.333333,0.333333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 27 iterations. tmfreqs:, 11, -0.333333, 0.333333, 0, 0.666667, 0.280092, 0.280155, 0.439082, 0.58087, 0.581035, 0.701106, 0.766461, 0.825015 elapsed time for k point: 0.311475038528 solve_kpoint (-0.266667,0.266667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 15 iterations. tmfreqs:, 12, -0.266667, 0.266667, 0, 0.533333, 0.244445, 0.307226, 0.448708, 0.559739, 0.597235, 0.699583, 0.773933, 0.80772 elapsed time for k point: 0.1760430336 solve_kpoint (-0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 13, -0.2, 0.2, 0, 0.4, 0.192601, 0.336978, 0.467722, 0.538055, 0.609757, 0.695231, 0.77985, 0.802206 elapsed time for k point: 0.152948856354 solve_kpoint (-0.133333,0.133333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 14, -0.133333, 0.133333, 0, 0.266667, 0.132075, 0.365778, 0.483253, 0.517524, 0.627555, 0.689432, 0.753492, 0.835064 elapsed time for k point: 0.153823852539 solve_kpoint (-0.0666667,0.0666667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tmfreqs:, 15, -0.0666667, 0.0666667, 0, 0.133333, 0.0670312, 0.388874, 0.490908, 0.500671, 0.654295, 0.684452, 0.721561, 0.874451 elapsed time for k point: 0.210424900055 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 31 iterations. tmfreqs:, 16, 0, 0, 0, 0, 0, 0.398513, 0.492888, 0.493368, 0.682486, 0.682532, 0.692015, 0.898224 .elapsed time for k point: 0.279296159744 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.280091568174 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 2 range: 0.280155239138 at Vector3<-0.333333333333, 0.333333333333, 0.0> to 0.398512608105 at Vector3<0.0, 0.0, 0.0> Band 3 range: 0.439081722845 at Vector3<-0.333333333333, 0.333333333333, 0.0> to 0.4928881019 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.493368477883 at Vector3<0.0, 0.0, 0.0> to 0.580870136527 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 5 range: 0.581035246804 at Vector3<-0.333333333333, 0.333333333333, 0.0> to 0.682486080137 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.682531744671 at Vector3<0.0, 0.0, 0.0> to 0.701106159321 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 7 range: 0.692014574213 at Vector3<0.0, 0.0, 0.0> to 0.784104262239 at Vector3<0.0, 0.4, 0.0> Band 8 range: 0.798007787259 at Vector3<0.0, 0.4, 0.0> to 0.898223942482 at Vector3<0.0, 0.0, 0.0> Gap from band 1 (0.280091568174) to band 2 (0.280155239138), 0.0227296123829% Gap from band 2 (0.398512608105) to band 3 (0.439081722845), 9.68705571209% Gap from band 3 (0.4928881019) to band 4 (0.493368477883), 0.0974139980871% Gap from band 4 (0.580870136527) to band 5 (0.581035246804), 0.0284206063456% Gap from band 5 (0.682486080137) to band 6 (0.682531744671), 0.00669068687167% Gap from band 7 (0.784104262239) to band 8 (0.798007787259), 1.75759043419% total elapsed time for run: 3.19175410271 done test_tri_holes: 9.74s test_tri_rods ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (0.866025, 0.5, 0) (0.866025, -0.5, 0) (0, 0, 1) Cell volume = 0.866025 Reciprocal lattice vectors (/ 2 pi): (0.57735, 1, -0) (0.57735, -1, 0) (-0, 0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.0, 0.1, 0.0> Vector3<0.0, 0.2, 0.0> Vector3<0.0, 0.3, 0.0> Vector3<0.0, 0.4, 0.0> Vector3<0.0, 0.5, 0.0> Vector3<-0.0666666666667, 0.466666666667, 0.0> Vector3<-0.133333333333, 0.433333333333, 0.0> Vector3<-0.2, 0.4, 0.0> Vector3<-0.266666666667, 0.366666666667, 0.0> Vector3<-0.333333333333, 0.333333333333, 0.0> Vector3<-0.266666666667, 0.266666666667, 0.0> Vector3<-0.2, 0.2, 0.0> Vector3<-0.133333333333, 0.133333333333, 0.0> Vector3<-0.0666666666667, 0.0666666666667, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00673794746399 solve_kpoint (0,0,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1, tm band 2, tm band 3, tm band 4, tm band 5, tm band 6, tm band 7, tm band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 24 iterations. tmfreqs:, 1, 0, 0, 0, 0, 0, 0.560518, 0.560561, 0.593296, 0.837451, 0.837595, 0.994129, 1.09832 elapsed time for k point: 0.217053174973 solve_kpoint (0,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tmfreqs:, 2, 0, 0.1, 0, 0.11547, 0.0711319, 0.538981, 0.559429, 0.617095, 0.834123, 0.839462, 0.988272, 1.08637 elapsed time for k point: 0.208266019821 solve_kpoint (0,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 15 iterations. tmfreqs:, 3, 0, 0.2, 0, 0.23094, 0.138898, 0.508574, 0.556587, 0.65398, 0.825087, 0.84452, 0.968999, 1.05281 elapsed time for k point: 0.174572944641 solve_kpoint (0,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 14 iterations. tmfreqs:, 4, 0, 0.3, 0, 0.34641, 0.198939, 0.479631, 0.553145, 0.693119, 0.813353, 0.850964, 0.932869, 1.02598 elapsed time for k point: 0.163384914398 solve_kpoint (0,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 5, 0, 0.4, 0, 0.46188, 0.244064, 0.4557, 0.550414, 0.730028, 0.80289, 0.856372, 0.891379, 1.01409 elapsed time for k point: 0.151288032532 solve_kpoint (0,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 6, 0, 0.5, 0, 0.57735, 0.262015, 0.445331, 0.549383, 0.749186, 0.797864, 0.85849, 0.870609, 1.01087 elapsed time for k point: 0.15042090416 solve_kpoint (-0.0666667,0.466667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 7, -0.0666667, 0.466667, 0, 0.581187, 0.262984, 0.4475, 0.545804, 0.752448, 0.797093, 0.860461, 0.870245, 0.99895 elapsed time for k point: 0.140777826309 solve_kpoint (-0.133333,0.433333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 8, -0.133333, 0.433333, 0, 0.592546, 0.265671, 0.453801, 0.535912, 0.761319, 0.795166, 0.866056, 0.869135, 0.973413 elapsed time for k point: 0.140491962433 solve_kpoint (-0.2,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 10 iterations. tmfreqs:, 9, -0.2, 0.4, 0, 0.61101, 0.269404, 0.463648, 0.52172, 0.773443, 0.792931, 0.867201, 0.874681, 0.94487 elapsed time for k point: 0.118628025055 solve_kpoint (-0.266667,0.366667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 10 iterations. tmfreqs:, 10, -0.266667, 0.366667, 0, 0.635959, 0.273, 0.476141, 0.505606, 0.78524, 0.791235, 0.864672, 0.885801, 0.918597 elapsed time for k point: 0.119807004929 solve_kpoint (-0.333333,0.333333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 9 iterations. tmfreqs:, 11, -0.333333, 0.333333, 0, 0.666667, 0.27469, 0.489984, 0.490239, 0.79072, 0.790832, 0.863041, 0.899109, 0.89925 elapsed time for k point: 0.108591079712 Fixing e-field (band 1) phase by -1 + 4.11936e-08i; max ampl. = 0.93911 Outputting fields to test_tri_rods-e.k11.b01.z.tm.h5... Fixing e-field (band 2) phase by 4.11936e-08 + 1i; max ampl. = 1.08316 Outputting fields to test_tri_rods-e.k11.b02.z.tm.h5... Fixing e-field (band 3) phase by 1 + -4.11936e-08i; max ampl. = 0.877953 Outputting fields to test_tri_rods-e.k11.b03.z.tm.h5... Fixing e-field (band 4) phase by 1 + -4.11936e-08i; max ampl. = 1.24657 Outputting fields to test_tri_rods-e.k11.b04.z.tm.h5... Fixing e-field (band 5) phase by 4.11936e-08 + 1i; max ampl. = 1.10168 Outputting fields to test_tri_rods-e.k11.b05.z.tm.h5... Fixing e-field (band 6) phase by 1 + -4.11936e-08i; max ampl. = 1.76186 Outputting fields to test_tri_rods-e.k11.b06.z.tm.h5... Fixing e-field (band 7) phase by -1 + 4.11936e-08i; max ampl. = 1.0881 Outputting fields to test_tri_rods-e.k11.b07.z.tm.h5... Fixing e-field (band 8) phase by -1 + 4.11937e-08i; max ampl. = 1.08096 Outputting fields to test_tri_rods-e.k11.b08.z.tm.h5... solve_kpoint (-0.266667,0.266667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 11 iterations. tmfreqs:, 12, -0.266667, 0.266667, 0, 0.533333, 0.2632, 0.47091, 0.51804, 0.764413, 0.795091, 0.864427, 0.896871, 0.932925 elapsed time for k point: 0.129807949066 solve_kpoint (-0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 13, -0.2, 0.2, 0, 0.4, 0.222593, 0.476537, 0.539917, 0.715636, 0.806516, 0.856013, 0.929969, 0.977199 elapsed time for k point: 0.14290189743 solve_kpoint (-0.133333,0.133333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 14, -0.133333, 0.133333, 0, 0.266667, 0.15856, 0.501245, 0.552927, 0.666818, 0.82116, 0.846938, 0.963589, 1.03113 elapsed time for k point: 0.152925014496 solve_kpoint (-0.0666667,0.0666667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 17 iterations. tmfreqs:, 15, -0.0666667, 0.0666667, 0, 0.133333, 0.0819275, 0.534465, 0.558896, 0.622523, 0.832982, 0.840137, 0.98638, 1.08149 elapsed time for k point: 0.199224948883 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 16 iterations. tmfreqs:, 16, 0, 0, 0, 0, 0, 0.560518, 0.560561, 0.593296, 0.837451, 0.837595, 0.994129, 1.09832 elapsed time for k point: 0.148926019669 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.274690225862 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 2 range: 0.445331080847 at Vector3<0.0, 0.5, 0.0> to 0.560518142316 at Vector3<0.0, 0.0, 0.0> Band 3 range: 0.490238914903 at Vector3<-0.333333333333, 0.333333333333, 0.0> to 0.56056079478 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.593296087359 at Vector3<0.0, 0.0, 0.0> to 0.790719597444 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 5 range: 0.790832076333 at Vector3<-0.333333333333, 0.333333333333, 0.0> to 0.837451116754 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.837594852844 at Vector3<0.0, 0.0, 0.0> to 0.86720092649 at Vector3<-0.2, 0.4, 0.0> Band 7 range: 0.869134995574 at Vector3<-0.133333333333, 0.433333333333, 0.0> to 0.994129102266 at Vector3<0.0, 0.0, 0.0> Band 8 range: 0.899249909555 at Vector3<-0.333333333333, 0.333333333333, 0.0> to 1.09831835292 at Vector3<0.0, 0.0, 0.0> Gap from band 1 (0.274690225862) to band 2 (0.445331080847), 47.3988348385% Gap from band 3 (0.56056079478) to band 4 (0.593296087359), 5.6740646237% Gap from band 4 (0.790719597444) to band 5 (0.790832076333), 0.0142238651132% Gap from band 5 (0.837451116754) to band 6 (0.837594852844), 0.0171620472726% Gap from band 6 (0.86720092649) to band 7 (0.869134995574), 0.222775910928% total elapsed time for run: 2.53289198875 done Read lattice vectors Read Bloch wavevector (-0.333333, 0.333333, 0) Input lattice = (0.866025, 0.5, 0), (0.866025, -0.5, 0), (0, 0, 1) Output lattice = (2.59808, 1.5, 0), (1.29904, -2.25, 0), (0, 0, 3) Input data is rank 2, size 32x32x1. Output data 96x83x1 real part range: -1.03932 .. 1.03493 imag part range: -1.08496 .. 1.08496 Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (0.866025, 0.5, 0) (0.866025, -0.5, 0) (0, 0, 1) Cell volume = 0.866025 Reciprocal lattice vectors (/ 2 pi): (0.57735, 1, -0) (0.57735, -1, 0) (-0, 0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: te. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.0, 0.1, 0.0> Vector3<0.0, 0.2, 0.0> Vector3<0.0, 0.3, 0.0> Vector3<0.0, 0.4, 0.0> Vector3<0.0, 0.5, 0.0> Vector3<-0.0666666666667, 0.466666666667, 0.0> Vector3<-0.133333333333, 0.433333333333, 0.0> Vector3<-0.2, 0.4, 0.0> Vector3<-0.266666666667, 0.366666666667, 0.0> Vector3<-0.333333333333, 0.333333333333, 0.0> Vector3<-0.266666666667, 0.266666666667, 0.0> Vector3<-0.2, 0.2, 0.0> Vector3<-0.133333333333, 0.133333333333, 0.0> Vector3<-0.0666666666667, 0.0666666666667, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00678491592407 solve_kpoint (0,0,0): tefreqs:, k index, k1, k2, k3, kmag/2pi, te band 1, te band 2, te band 3, te band 4, te band 5, te band 6, te band 7, te band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 56 iterations. tefreqs:, 1, 0, 0, 0, 0, 0, 0.561229, 0.793929, 0.794659, 1.03341, 1.03342, 1.11597, 1.11681 elapsed time for k point: 0.499305009842 solve_kpoint (0,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 31 iterations. tefreqs:, 2, 0, 0.1, 0, 0.11547, 0.101865, 0.559805, 0.79146, 0.793258, 0.992126, 1.02845, 1.09799, 1.1151 elapsed time for k point: 0.356117010117 solve_kpoint (0,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 29 iterations. tefreqs:, 3, 0, 0.2, 0, 0.23094, 0.202662, 0.555133, 0.784265, 0.784932, 0.925328, 1.01804, 1.06979, 1.11298 elapsed time for k point: 0.33376288414 solve_kpoint (0,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 25 iterations. tefreqs:, 4, 0, 0.3, 0, 0.34641, 0.300756, 0.545003, 0.752836, 0.776604, 0.881527, 1.00851, 1.04494, 1.1117 elapsed time for k point: 0.285987138748 solve_kpoint (0,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 5, 0, 0.4, 0, 0.46188, 0.392756, 0.521577, 0.705571, 0.77011, 0.86865, 1.00251, 1.02766, 1.11107 elapsed time for k point: 0.268684148788 solve_kpoint (0,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 22 iterations. tefreqs:, 6, 0, 0.5, 0, 0.57735, 0.468428, 0.473072, 0.683225, 0.767661, 0.866987, 1.00052, 1.02137, 1.11088 elapsed time for k point: 0.256329059601 solve_kpoint (-0.0666667,0.466667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 7, -0.0666667, 0.466667, 0, 0.581187, 0.472654, 0.474197, 0.67604, 0.772695, 0.866879, 0.969813, 1.05066, 1.11081 elapsed time for k point: 0.276118040085 solve_kpoint (-0.133333,0.433333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 24 iterations. tefreqs:, 8, -0.133333, 0.433333, 0, 0.592546, 0.477432, 0.485081, 0.657266, 0.784802, 0.866577, 0.932933, 1.08112, 1.11059 elapsed time for k point: 0.269703865051 solve_kpoint (-0.2,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 23 iterations. tefreqs:, 9, -0.2, 0.4, 0, 0.61101, 0.48232, 0.50501, 0.630584, 0.799745, 0.866126, 0.900465, 1.09936, 1.11024 elapsed time for k point: 0.262209177017 solve_kpoint (-0.266667,0.366667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 22 iterations. tefreqs:, 10, -0.266667, 0.366667, 0, 0.635959, 0.487852, 0.531427, 0.598151, 0.814208, 0.865617, 0.875643, 1.10711, 1.10983 elapsed time for k point: 0.251059055328 solve_kpoint (-0.333333,0.333333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 19 iterations. tefreqs:, 11, -0.333333, 0.333333, 0, 0.666667, 0.491236, 0.563106, 0.563151, 0.821423, 0.865195, 0.865231, 1.10923, 1.10941 elapsed time for k point: 0.214154005051 solve_kpoint (-0.266667,0.266667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 21 iterations. tefreqs:, 12, -0.266667, 0.266667, 0, 0.533333, 0.446126, 0.532191, 0.637012, 0.806654, 0.86614, 0.893198, 1.10593, 1.10866 elapsed time for k point: 0.233645915985 solve_kpoint (-0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 22 iterations. tefreqs:, 13, -0.2, 0.2, 0, 0.4, 0.345267, 0.542882, 0.713396, 0.795022, 0.875814, 0.938821, 1.09707, 1.10904 elapsed time for k point: 0.248755931854 solve_kpoint (-0.133333,0.133333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 27 iterations. tefreqs:, 14, -0.133333, 0.133333, 0, 0.266667, 0.233479, 0.553269, 0.768719, 0.792196, 0.912766, 0.987203, 1.08919, 1.11098 elapsed time for k point: 0.308058023453 solve_kpoint (-0.0666667,0.0666667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 33 iterations. tefreqs:, 15, -0.0666667, 0.0666667, 0, 0.133333, 0.117556, 0.559323, 0.789736, 0.793576, 0.983043, 1.02374, 1.09661, 1.11448 elapsed time for k point: 0.37415099144 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 35 iterations. tefreqs:, 16, 0, 0, 0, 0, 0, 0.561229, 0.793929, 0.794659, 1.03341, 1.03342, 1.11597, 1.11681 elapsed time for k point: 0.30898809433 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.491235811868 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 2 range: 0.473072239028 at Vector3<0.0, 0.5, 0.0> to 0.563105937871 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 3 range: 0.563150519856 at Vector3<-0.333333333333, 0.333333333333, 0.0> to 0.793928939584 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.767661479904 at Vector3<0.0, 0.5, 0.0> to 0.821423004419 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 5 range: 0.865194814442 at Vector3<-0.333333333333, 0.333333333333, 0.0> to 1.03341300186 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.865230799494 at Vector3<-0.333333333333, 0.333333333333, 0.0> to 1.03342309104 at Vector3<0.0, 0.0, 0.0> Band 7 range: 1.02136766911 at Vector3<0.0, 0.5, 0.0> to 1.11596699076 at Vector3<0.0, 0.0, 0.0> Band 8 range: 1.10866265854 at Vector3<-0.266666666667, 0.266666666667, 0.0> to 1.11681071913 at Vector3<0.0, 0.0, 0.0> Gap from band 2 (0.563105937871) to band 3 (0.563150519856), 0.00791684419559% Gap from band 4 (0.821423004419) to band 5 (0.865194814442), 5.1904835266% total elapsed time for run: 4.75768208504 done epsilon: 1-12, mean 2.59614, harm. mean 1.17149, 17.2852% > 1, 14.5104% "fill" .Read lattice vectors Read Bloch wavevector (0, 0, 0) Input lattice = (0.866025, 0.5, 0), (0.866025, -0.5, 0), (0, 0, 1) Output lattice = (2.59808, 1.5, 0), (1.29904, -2.25, 0), (0, 0, 3) Input data is rank 2, size 32x32x1. Output data 96x83x1 real part range: 1 .. 12 test_tri_rods: 7.34s test_triangular_lattice ======================== Initializing eigensolver data Computing 8 bands with 1e-12 tolerance Working in 2 dimensions. Grid size is 32 x 32 x 1. Solving for 8 bands at a time. Creating Maxwell data... Mesh size is 3. Lattice vectors: (0.866025, 0.5, 0) (0.866025, -0.5, 0) (0, 0, 1) Cell volume = 0.866025 Reciprocal lattice vectors (/ 2 pi): (0.57735, 1, -0) (0.57735, -1, 0) (-0, 0, 1) Geometric objects: cylinder, center = (0,0,0) radius 0.2, height 1e+20, axis (0, 0, 1) Geometric object tree has depth 1 and 1 object nodes (vs. 1 actual objects) Initializing epsilon function... Allocating fields... Solving for band polarization: tm. Initializing fields to random numbers... 16 k-points Vector3<0.0, 0.0, 0.0> Vector3<0.0, 0.1, 0.0> Vector3<0.0, 0.2, 0.0> Vector3<0.0, 0.3, 0.0> Vector3<0.0, 0.4, 0.0> Vector3<0.0, 0.5, 0.0> Vector3<-0.0666666666667, 0.466666666667, 0.0> Vector3<-0.133333333333, 0.433333333333, 0.0> Vector3<-0.2, 0.4, 0.0> Vector3<-0.266666666667, 0.366666666667, 0.0> Vector3<-0.333333333333, 0.333333333333, 0.0> Vector3<-0.266666666667, 0.266666666667, 0.0> Vector3<-0.2, 0.2, 0.0> Vector3<-0.133333333333, 0.133333333333, 0.0> Vector3<-0.0666666666667, 0.0666666666667, 0.0> Vector3<0.0, 0.0, 0.0> elapsed time for initialization: 0.00647902488708 solve_kpoint (0,0,0): tmfreqs:, k index, k1, k2, k3, kmag/2pi, tm band 1, tm band 2, tm band 3, tm band 4, tm band 5, tm band 6, tm band 7, tm band 8 Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 24 iterations. tmfreqs:, 1, 0, 0, 0, 0, 0, 0.560518, 0.560561, 0.593296, 0.837451, 0.837595, 0.994129, 1.09832 elapsed time for k point: 0.215286016464 solve_kpoint (0,0.1,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 18 iterations. tmfreqs:, 2, 0, 0.1, 0, 0.11547, 0.0711319, 0.538981, 0.559429, 0.617095, 0.834123, 0.839462, 0.988272, 1.08637 elapsed time for k point: 0.203267812729 solve_kpoint (0,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 15 iterations. tmfreqs:, 3, 0, 0.2, 0, 0.23094, 0.138898, 0.508574, 0.556587, 0.65398, 0.825087, 0.84452, 0.968999, 1.05281 elapsed time for k point: 0.172528982162 solve_kpoint (0,0.3,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 14 iterations. tmfreqs:, 4, 0, 0.3, 0, 0.34641, 0.198939, 0.479631, 0.553145, 0.693119, 0.813353, 0.850964, 0.932869, 1.02598 elapsed time for k point: 0.15832901001 solve_kpoint (0,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 5, 0, 0.4, 0, 0.46188, 0.244064, 0.4557, 0.550414, 0.730028, 0.80289, 0.856372, 0.891379, 1.01409 elapsed time for k point: 0.144453048706 solve_kpoint (0,0.5,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 6, 0, 0.5, 0, 0.57735, 0.262015, 0.445331, 0.549383, 0.749186, 0.797864, 0.85849, 0.870609, 1.01087 elapsed time for k point: 0.147696018219 solve_kpoint (-0.0666667,0.466667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 7, -0.0666667, 0.466667, 0, 0.581187, 0.262984, 0.4475, 0.545804, 0.752448, 0.797093, 0.860461, 0.870245, 0.99895 elapsed time for k point: 0.138514041901 solve_kpoint (-0.133333,0.433333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 8, -0.133333, 0.433333, 0, 0.592546, 0.265671, 0.453801, 0.535912, 0.761319, 0.795166, 0.866056, 0.869135, 0.973413 elapsed time for k point: 0.138357877731 solve_kpoint (-0.2,0.4,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 10 iterations. tmfreqs:, 9, -0.2, 0.4, 0, 0.61101, 0.269404, 0.463648, 0.52172, 0.773443, 0.792931, 0.867201, 0.874681, 0.94487 elapsed time for k point: 0.117697000504 solve_kpoint (-0.266667,0.366667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 10 iterations. tmfreqs:, 10, -0.266667, 0.366667, 0, 0.635959, 0.273, 0.476141, 0.505606, 0.78524, 0.791235, 0.864672, 0.885801, 0.918597 elapsed time for k point: 0.1174659729 solve_kpoint (-0.333333,0.333333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 9 iterations. tmfreqs:, 11, -0.333333, 0.333333, 0, 0.666667, 0.27469, 0.489984, 0.490239, 0.79072, 0.790832, 0.863041, 0.899109, 0.89925 elapsed time for k point: 0.107115030289 solve_kpoint (-0.266667,0.266667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 11 iterations. tmfreqs:, 12, -0.266667, 0.266667, 0, 0.533333, 0.2632, 0.47091, 0.51804, 0.764413, 0.795091, 0.864427, 0.896871, 0.932925 elapsed time for k point: 0.128278970718 solve_kpoint (-0.2,0.2,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 12 iterations. tmfreqs:, 13, -0.2, 0.2, 0, 0.4, 0.222593, 0.476537, 0.539917, 0.715636, 0.806516, 0.856013, 0.929969, 0.977199 elapsed time for k point: 0.138334989548 solve_kpoint (-0.133333,0.133333,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 13 iterations. tmfreqs:, 14, -0.133333, 0.133333, 0, 0.266667, 0.15856, 0.501245, 0.552927, 0.666818, 0.82116, 0.846938, 0.963589, 1.03113 elapsed time for k point: 0.15074300766 solve_kpoint (-0.0666667,0.0666667,0): Solving for bands 1 to 8... Finished solving for bands 1 to 8 after 17 iterations. tmfreqs:, 15, -0.0666667, 0.0666667, 0, 0.133333, 0.0819275, 0.534465, 0.558896, 0.622523, 0.832982, 0.840137, 0.98638, 1.08149 elapsed time for k point: 0.196300983429 solve_kpoint (0,0,0): Solving for bands 2 to 8... Finished solving for bands 2 to 8 after 16 iterations. tmfreqs:, 16, 0, 0, 0, 0, 0, 0.560518, 0.560561, 0.593296, 0.837451, 0.837595, 0.994129, 1.09832 .. ====================================================================== FAIL: test_output_efield_z (__main__.TestModeSolver) ---------------------------------------------------------------------- Traceback (most recent call last): File "./tests/mpb.py", line 435, in test_output_efield_z self.compare_h5_files(ref_path, res_path) File "./tests/mpb.py", line 191, in compare_h5_files compare_arrays(self, ref[k].value, res[k].value, tol=tol) File "/build/meep-1.7.0/python/tests/utils.py", line 15, in compare_arrays test_instance.assertLess(diff, tol) AssertionError: 0.0035191813738987736 not less than 0.001 ---------------------------------------------------------------------- Ran 45 tests in 819.718s FAILED (failures=1) elapsed time for k point: 0.14573597908 Band 1 range: 0.0 at Vector3<0.0, 0.0, 0.0> to 0.274690225862 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 2 range: 0.445331080847 at Vector3<0.0, 0.5, 0.0> to 0.560518142316 at Vector3<0.0, 0.0, 0.0> Band 3 range: 0.490238914903 at Vector3<-0.333333333333, 0.333333333333, 0.0> to 0.56056079478 at Vector3<0.0, 0.0, 0.0> Band 4 range: 0.593296087359 at Vector3<0.0, 0.0, 0.0> to 0.790719597444 at Vector3<-0.333333333333, 0.333333333333, 0.0> Band 5 range: 0.790832076333 at Vector3<-0.333333333333, 0.333333333333, 0.0> to 0.837451116754 at Vector3<0.0, 0.0, 0.0> Band 6 range: 0.837594852844 at Vector3<0.0, 0.0, 0.0> to 0.86720092649 at Vector3<-0.2, 0.4, 0.0> Band 7 range: 0.869134995574 at Vector3<-0.133333333333, 0.433333333333, 0.0> to 0.994129102266 at Vector3<0.0, 0.0, 0.0> Band 8 range: 0.899249909555 at Vector3<-0.333333333333, 0.333333333333, 0.0> to 1.09831835292 at Vector3<0.0, 0.0, 0.0> Gap from band 1 (0.274690225862) to band 2 (0.445331080847), 47.3988348385% Gap from band 3 (0.56056079478) to band 4 (0.593296087359), 5.6740646237% Gap from band 4 (0.790719597444) to band 5 (0.790832076333), 0.0142238651132% Gap from band 5 (0.837451116754) to band 6 (0.837594852844), 0.0171620472726% Gap from band 6 (0.86720092649) to band 7 (0.869134995574), 0.222775910928% total elapsed time for run: 2.43053388596 done test_triangular_lattice: 2.43s test_update_band_range_data ======================== test_update_band_range_data: 0.00s Elapsed run time = 819.7648 s FAIL tests/mpb.py (exit status: 1) FAIL: tests/multilevel_atom =========================== ----------- Initializing structure... Working in 1D dimensions. Computational cell is 0 x 0 x 3 with resolution 40 block, center = (0,0,-1) size (1e+20,1e+20,1) axes (1,0,0), (0,1,0), (0,0,1) dielectric constant epsilon diagonal = (2.25,2.25,2.25) time for set_epsilon = 0.000190973 s multilevel atom susceptibility ----------- Meep progress: 936.5125/7000.0 = 13.4% done in 4.0s, 25.9s to go on time step 74921 (time=936.513), 5.33905e-05 s/step Meep progress: 1844.3625/7000.0 = 26.3% done in 8.0s, 22.4s to go on time step 147550 (time=1844.38), 5.50747e-05 s/step Meep progress: 2760.725/7000.0 = 39.4% done in 12.0s, 18.4s to go on time step 220860 (time=2760.75), 5.45634e-05 s/step Meep progress: 3691.475/7000.0 = 52.7% done in 16.0s, 14.3s to go on time step 295321 (time=3691.51), 5.37197e-05 s/step Meep progress: 4603.6375/7000.0 = 65.8% done in 20.0s, 10.4s to go on time step 368295 (time=4603.69), 5.48145e-05 s/step Meep progress: 5639.1875/7000.0 = 80.6% done in 24.0s, 5.8s to go on time step 451141 (time=5639.26), 4.82828e-05 s/step Meep progress: 6673.1/7000.0 = 95.3% done in 28.0s, 1.4s to go on time step 533854 (time=6673.18), 4.83606e-05 s/step F Field time usage: connecting chunks: 0.000255108 s time stepping: 18.0939 s communicating: 1.57687 s Fourier transforming: 0.137434 s everything else: 9.46482 s ====================================================================== FAIL: test_multilevel_atom (__main__.TestMultiLevelAtom) ---------------------------------------------------------------------- Traceback (most recent call last): File "./tests/multilevel_atom.py", line 66, in test_multilevel_atom sim.run(mp.at_end(check_field), until=7000) File "/build/meep-1.7.0/python/meep/simulation.py", line 1712, in run self._run_until(until, step_funcs) File "/build/meep-1.7.0/python/meep/simulation.py", line 1094, in _run_until _eval_step_func(self, func, 'finish') File "/build/meep-1.7.0/python/meep/simulation.py", line 1929, in _eval_step_func func(sim, todo) File "/build/meep-1.7.0/python/meep/simulation.py", line 1981, in _end _eval_step_func(sim, func, 'step') File "/build/meep-1.7.0/python/meep/simulation.py", line 1927, in _eval_step_func func(sim) File "./tests/multilevel_atom.py", line 62, in check_field self.assertAlmostEqual(fp, -2.7110969214986387) AssertionError: -0.04452311652305546 != -2.7110969214986387 within 7 places ---------------------------------------------------------------------- Ran 1 test in 29.277s FAILED (failures=1) Elapsed run time = 29.2793 s FAIL tests/multilevel_atom.py (exit status: 1) make[1]: Leaving directory '/build/meep-1.7.0' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with autoreconf dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/meep-1.7.0' dh_installchangelogs NEWS.md dh_auto_install make -j1 install DESTDIR=/build/meep-1.7.0/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/meep-1.7.0' Making install in src make[3]: Entering directory '/build/meep-1.7.0/src' make install-am make[4]: Entering directory '/build/meep-1.7.0/src' make[5]: Entering directory '/build/meep-1.7.0/src' /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libmeep.la '/build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libmeep.so.12.0.0 /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeep.so.12.0.0 libtool: install: (cd /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libmeep.so.12.0.0 libmeep.so.12 || { rm -f libmeep.so.12 && ln -s libmeep.so.12.0.0 libmeep.so.12; }; }) libtool: install: (cd /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libmeep.so.12.0.0 libmeep.so || { rm -f libmeep.so && ln -s libmeep.so.12.0.0 libmeep.so; }; }) libtool: install: /usr/bin/install -c .libs/libmeep.lai /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeep.la libtool: install: /usr/bin/install -c .libs/libmeep.a /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeep.a libtool: install: chmod 644 /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeep.a libtool: install: aarch64-linux-gnu-ranlib /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeep.a libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/include' /usr/bin/install -c -m 644 meep.hpp '/build/meep-1.7.0/debian/tmp/usr/include' /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/include/meep' /usr/bin/install -c -m 644 meep/mympi.hpp meep/vec.hpp '/build/meep-1.7.0/debian/tmp/usr/include/meep' make[5]: Leaving directory '/build/meep-1.7.0/src' make[4]: Leaving directory '/build/meep-1.7.0/src' make[3]: Leaving directory '/build/meep-1.7.0/src' Making install in tests make[3]: Entering directory '/build/meep-1.7.0/tests' make[4]: Entering directory '/build/meep-1.7.0/tests' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/meep-1.7.0/tests' make[3]: Leaving directory '/build/meep-1.7.0/tests' Making install in scheme make[3]: Entering directory '/build/meep-1.7.0/scheme' make install-am make[4]: Entering directory '/build/meep-1.7.0/scheme' make[5]: Entering directory '/build/meep-1.7.0/scheme' /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/install -c meep '/build/meep-1.7.0/debian/tmp/usr/bin' libtool: warning: '../src/libmeep.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/meep /build/meep-1.7.0/debian/tmp/usr/bin/meep /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/share/meep' /usr/bin/install -c -m 644 meep.scm meep-enums.scm casimir.scm materials.scm '/build/meep-1.7.0/debian/tmp/usr/share/meep' make[5]: Leaving directory '/build/meep-1.7.0/scheme' make[4]: Leaving directory '/build/meep-1.7.0/scheme' make[3]: Leaving directory '/build/meep-1.7.0/scheme' Making install in libmeepgeom make[3]: Entering directory '/build/meep-1.7.0/libmeepgeom' make[4]: Entering directory '/build/meep-1.7.0/libmeepgeom' /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libmeepgeom.la '/build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libmeepgeom.la' libtool: install: (cd /build/meep-1.7.0/libmeepgeom; /bin/sh "/build/meep-1.7.0/libtool" --tag CXX --mode=relink aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o libmeepgeom.la -rpath /usr/lib/aarch64-linux-gnu meepgeom.lo GDSIIgeom.lo ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -inst-prefix-dir /build/meep-1.7.0/debian/tmp) libtool: relink: aarch64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/8/crtbeginS.o .libs/meepgeom.o .libs/GDSIIgeom.o -L/build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lmeep -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/8/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,-soname -Wl,libmeepgeom.so.12 -o .libs/libmeepgeom.so.12.0.0 libtool: install: /usr/bin/install -c .libs/libmeepgeom.so.12.0.0T /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 libtool: install: (cd /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libmeepgeom.so.12.0.0 libmeepgeom.so.12 || { rm -f libmeepgeom.so.12 && ln -s libmeepgeom.so.12.0.0 libmeepgeom.so.12; }; }) libtool: install: (cd /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libmeepgeom.so.12.0.0 libmeepgeom.so || { rm -f libmeepgeom.so && ln -s libmeepgeom.so.12.0.0 libmeepgeom.so; }; }) libtool: install: /usr/bin/install -c .libs/libmeepgeom.lai /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeepgeom.la libtool: install: /usr/bin/install -c .libs/libmeepgeom.a /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeepgeom.a libtool: install: chmod 644 /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeepgeom.a libtool: install: aarch64-linux-gnu-ranlib /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeepgeom.a libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/include/meep' /usr/bin/install -c -m 644 meepgeom.hpp material_data.hpp '/build/meep-1.7.0/debian/tmp/usr/include/meep' make[4]: Leaving directory '/build/meep-1.7.0/libmeepgeom' make[3]: Leaving directory '/build/meep-1.7.0/libmeepgeom' Making install in libpympb make[3]: Entering directory '/build/meep-1.7.0/libpympb' make[4]: Entering directory '/build/meep-1.7.0/libpympb' /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libpympb.la '/build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libpympb.la' libtool: install: (cd /build/meep-1.7.0/libpympb; /bin/sh "/build/meep-1.7.0/libtool" --tag CXX --mode=relink aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o libpympb.la -rpath /usr/lib/aarch64-linux-gnu libpympb_la-pympb.lo ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -inst-prefix-dir /build/meep-1.7.0/debian/tmp) libtool: relink: aarch64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/8/crtbeginS.o .libs/libpympb_la-pympb.o -L/build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lmeep -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/8/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,-soname -Wl,libpympb.so.12 -o .libs/libpympb.so.12.0.0 libtool: install: /usr/bin/install -c .libs/libpympb.so.12.0.0T /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libpympb.so.12.0.0 libtool: install: (cd /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libpympb.so.12.0.0 libpympb.so.12 || { rm -f libpympb.so.12 && ln -s libpympb.so.12.0.0 libpympb.so.12; }; }) libtool: install: (cd /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libpympb.so.12.0.0 libpympb.so || { rm -f libpympb.so && ln -s libpympb.so.12.0.0 libpympb.so; }; }) libtool: install: /usr/bin/install -c .libs/libpympb.lai /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libpympb.la libtool: install: /usr/bin/install -c .libs/libpympb.a /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libpympb.a libtool: install: chmod 644 /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libpympb.a libtool: install: aarch64-linux-gnu-ranlib /build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libpympb.a libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/include/meep' /usr/bin/install -c -m 644 pympb.hpp '/build/meep-1.7.0/debian/tmp/usr/include/meep' make[4]: Leaving directory '/build/meep-1.7.0/libpympb' make[3]: Leaving directory '/build/meep-1.7.0/libpympb' Making install in python make[3]: Entering directory '/build/meep-1.7.0/python' /bin/sh: git: command not found cp meep.py __init__.py echo "__version__ = ''" >> __init__.py if [[ "3.0.12" = 3.0.12 ]]; then \ sed -i.bak '/^if _swig_python_version_info >= (2, 7, 0):/,/^else:/d' __init__.py; \ sed -i.bak 's/ import _meep/from . import _meep/' __init__.py; \ fi if [[ "3.0.12" == 3.0.12 ]]; then \ sed -i.bak '/^if _swig_python_version_info >= (2, 7, 0):/,/^else:/d' mpb.py; \ sed -i.bak 's/ import _mpb/from . import _mpb/' mpb.py; \ fi make install-am make[4]: Entering directory '/build/meep-1.7.0/python' /bin/sh: git: command not found cp meep.py __init__.py echo "__version__ = ''" >> __init__.py if [[ "3.0.12" = 3.0.12 ]]; then \ sed -i.bak '/^if _swig_python_version_info >= (2, 7, 0):/,/^else:/d' __init__.py; \ sed -i.bak 's/ import _meep/from . import _meep/' __init__.py; \ fi if [[ "3.0.12" == 3.0.12 ]]; then \ sed -i.bak '/^if _swig_python_version_info >= (2, 7, 0):/,/^else:/d' mpb.py; \ sed -i.bak 's/ import _mpb/from . import _mpb/' mpb.py; \ fi mkdir -p meep cp __init__.py ./geom.py ./simulation.py ./source.py ./materials.py .libs/_meep.so meep mkdir -p meep/mpb cp .libs/_mpb.so meep/mpb cp ./mpb.py meep/mpb/__init__.py cp ./solver.py ./mpb_data.py meep/mpb make[5]: Entering directory '/build/meep-1.7.0/python' /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep' /bin/sh ../libtool --mode=install /usr/bin/install -c _meep.la '/build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep' libtool: warning: relinking '_meep.la' libtool: install: (cd /build/meep-1.7.0/python; /bin/sh "/build/meep-1.7.0/libtool" --tag CXX --mode=relink aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o _meep.la -rpath /usr/lib/python2.7/dist-packages/meep _meep_la-meep-python.lo ../src/libmeep.la ../libmeepgeom/libmeepgeom.la -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -inst-prefix-dir /build/meep-1.7.0/debian/tmp) libtool: relink: aarch64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/8/crtbeginS.o .libs/_meep_la-meep-python.o -L/build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lmeep -lmeepgeom -lctlgeom -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/8/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,-soname -Wl,_meep.so.12 -o .libs/_meep.so.12.0.0 libtool: install: /usr/bin/install -c .libs/_meep.so.12.0.0T /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 libtool: install: (cd /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep && { ln -s -f _meep.so.12.0.0 _meep.so.12 || { rm -f _meep.so.12 && ln -s _meep.so.12.0.0 _meep.so.12; }; }) libtool: install: (cd /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep && { ln -s -f _meep.so.12.0.0 _meep.so || { rm -f _meep.so && ln -s _meep.so.12.0.0 _meep.so; }; }) libtool: install: /usr/bin/install -c .libs/_meep.lai /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/_meep.la libtool: install: /usr/bin/install -c .libs/_meep.a /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/_meep.a libtool: install: chmod 644 /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/_meep.a libtool: install: aarch64-linux-gnu-ranlib /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/_meep.a libtool: warning: remember to run 'libtool --finish /usr/lib/python2.7/dist-packages/meep' /bin/sh: git: command not found cp meep.py __init__.py echo "__version__ = ''" >> __init__.py if [[ "3.0.12" = 3.0.12 ]]; then \ sed -i.bak '/^if _swig_python_version_info >= (2, 7, 0):/,/^else:/d' __init__.py; \ sed -i.bak 's/ import _meep/from . import _meep/' __init__.py; \ fi if [[ "3.0.12" == 3.0.12 ]]; then \ sed -i.bak '/^if _swig_python_version_info >= (2, 7, 0):/,/^else:/d' mpb.py; \ sed -i.bak 's/ import _mpb/from . import _mpb/' mpb.py; \ fi /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep' /usr/bin/install -c -m 644 geom.py __init__.py source.py simulation.py materials.py '/build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep' Byte-compiling python modules... geom.py__init__.pysource.pysimulation.pymaterials.py Byte-compiling python modules (optimized versions) ... geom.py__init__.pysource.pysimulation.pymaterials.py /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb' /usr/bin/install -c -m 644 mpb.py solver.py mpb_data.py '/build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb' /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb' /bin/sh ../libtool --mode=install /usr/bin/install -c _mpb.la '/build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb' libtool: warning: relinking '_mpb.la' libtool: install: (cd /build/meep-1.7.0/python; /bin/sh "/build/meep-1.7.0/libtool" --tag CXX --mode=relink aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -o _mpb.la -rpath /usr/lib/python2.7/dist-packages/meep/mpb _mpb_la-mpb-python.lo ../libmeepgeom/libmeepgeom.la ../libpympb/libpympb.la -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -inst-prefix-dir /build/meep-1.7.0/debian/tmp) libtool: relink: aarch64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/8/crtbeginS.o .libs/_mpb_la-mpb-python.o -L/build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lmeepgeom -lpympb -lctlgeom -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/8/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,-soname -Wl,_mpb.so.12 -o .libs/_mpb.so.12.0.0 libtool: install: /usr/bin/install -c .libs/_mpb.so.12.0.0T /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 libtool: install: (cd /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb && { ln -s -f _mpb.so.12.0.0 _mpb.so.12 || { rm -f _mpb.so.12 && ln -s _mpb.so.12.0.0 _mpb.so.12; }; }) libtool: install: (cd /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb && { ln -s -f _mpb.so.12.0.0 _mpb.so || { rm -f _mpb.so && ln -s _mpb.so.12.0.0 _mpb.so; }; }) libtool: install: /usr/bin/install -c .libs/_mpb.lai /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.la libtool: install: /usr/bin/install -c .libs/_mpb.a /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.a libtool: install: chmod 644 /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.a libtool: install: aarch64-linux-gnu-ranlib /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.a libtool: warning: remember to run 'libtool --finish /usr/lib/python2.7/dist-packages/meep/mpb' make install-data-hook make[6]: Entering directory '/build/meep-1.7.0/python' mv /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb/mpb.py /build/meep-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb/__init__.py make[6]: Leaving directory '/build/meep-1.7.0/python' make[5]: Leaving directory '/build/meep-1.7.0/python' make[4]: Leaving directory '/build/meep-1.7.0/python' make[3]: Leaving directory '/build/meep-1.7.0/python' make[3]: Entering directory '/build/meep-1.7.0' make[4]: Entering directory '/build/meep-1.7.0' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 meep.pc '/build/meep-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' make[4]: Leaving directory '/build/meep-1.7.0' make[3]: Leaving directory '/build/meep-1.7.0' make[2]: Leaving directory '/build/meep-1.7.0' rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/*.pyc rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/*.pyo rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/*.a rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/*.la rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb/*.pyc rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb/*.pyo rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb/*.a rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb/*.la make[1]: Leaving directory '/build/meep-1.7.0' dh_install dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: symbol geom_box_tree_stats used by debian/libmeep12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol ensure_periodicity used by debian/libmeep12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol display_geom_box_tree used by debian/libmeep12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol vector3_plus used by debian/libmeep12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol geom_fix_objects0 used by debian/libmeep12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol geometry_lattice used by debian/libmeep12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol vector3_equal used by debian/libmeep12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol object_of_point_in_tree used by debian/libmeep12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol display_geometric_object_info used by debian/libmeep12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol unit_vector3 used by debian/libmeep12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol geometry_lattice used by debian/libmeep12/usr/lib/aarch64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol vector3_equal used by debian/libmeep12/usr/lib/aarch64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN9meep_geom19material_type_equalEPNS_13material_dataES1_ used by debian/libmeep12/usr/lib/aarch64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol object_of_point_in_tree used by debian/libmeep12/usr/lib/aarch64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol geom_fix_objects0 used by debian/libmeep12/usr/lib/aarch64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol shift_to_unit_cell used by debian/libmeep12/usr/lib/aarch64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol point_in_periodic_fixed_objectp used by debian/libmeep12/usr/lib/aarch64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol display_geometric_object_info used by debian/libmeep12/usr/lib/aarch64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN9meep_geom11is_variableEPv used by debian/libmeep12/usr/lib/aarch64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol make_cnumber used by debian/libmeep12/usr/lib/aarch64-linux-gnu/libpympb.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: 27 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 debian/libmeep12/usr/lib/aarch64-linux-gnu/libmeep.so.12.0.0 debian/libmeep12/usr/lib/aarch64-linux-gnu/libpympb.so.12.0.0 were not linked against libcblas.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 debian/libmeep12/usr/lib/aarch64-linux-gnu/libmeep.so.12.0.0 debian/libmeep12/usr/lib/aarch64-linux-gnu/libpympb.so.12.0.0 were not linked against libatlas.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 debian/libmeep12/usr/lib/aarch64-linux-gnu/libmeep.so.12.0.0 debian/libmeep12/usr/lib/aarch64-linux-gnu/libpympb.so.12.0.0 were not linked against libgslcblas.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 debian/libmeep12/usr/lib/aarch64-linux-gnu/libmeep.so.12.0.0 debian/libmeep12/usr/lib/aarch64-linux-gnu/libpympb.so.12.0.0 were not linked against libgfortran.so.5 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 debian/libmeep12/usr/lib/aarch64-linux-gnu/libmeep.so.12.0.0 debian/libmeep12/usr/lib/aarch64-linux-gnu/libpympb.so.12.0.0 were not linked against libz.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 contains an unresolvable reference to symbol PyImport_ImportModule: it's probably a plugin dpkg-shlibdeps: warning: 111 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libcblas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against liblapack.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libgslcblas.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libgsl.so.23 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libfftw3.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libz.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libf77blas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libatlas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libgc.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libgfortran.so.5 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libhdf5_serial.so.103 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep/usr/bin/meep was not linked against libharminv.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 contains an unresolvable reference to symbol PyDict_SetItem: it's probably a plugin dpkg-shlibdeps: warning: 97 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 were not linked against libhdf5_serial.so.103 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 were not linked against libgfortran.so.5 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 were not linked against libgsl.so.23 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 were not linked against libharminv.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 were not linked against libgslcblas.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 were not linked against libz.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 were not linked against libatlas.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 debian/python-meep/usr/lib/python2.7/dist-packages/meep/mpb/_mpb.so.12.0.0 were not linked against libcblas.so.3 (they use none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'meep-dbgsym' in '../meep-dbgsym_1.7.0-3_arm64.deb'. dpkg-deb: building package 'meep' in '../meep_1.7.0-3_arm64.deb'. dpkg-deb: building package 'libmeep12' in '../libmeep12_1.7.0-3_arm64.deb'. dpkg-deb: building package 'libmeep12-dbgsym' in '../libmeep12-dbgsym_1.7.0-3_arm64.deb'. dpkg-deb: building package 'python-meep-dbgsym' in '../python-meep-dbgsym_1.7.0-3_arm64.deb'. dpkg-deb: building package 'libmeep-dev' in '../libmeep-dev_1.7.0-3_arm64.deb'. dpkg-deb: building package 'python-meep' in '../python-meep_1.7.0-3_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../meep_1.7.0-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/19112/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/19112/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/19112 and its subdirectories I: Current time: Sun Sep 12 19:40:57 +14 2021 I: pbuilder-time-stamp: 1631425257