I: pbuilder: network access will be disabled during build I: Current time: Tue Sep 14 01:24:19 -12 2021 I: pbuilder-time-stamp: 1631625859 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mash_2.1+dfsg-2.dsc] I: copying [./mash_2.1+dfsg.orig.tar.xz] I: copying [./mash_2.1+dfsg-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Feb 7 03:02:33 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mash_2.1+dfsg-2.dsc dpkg-source: info: extracting mash in mash-2.1+dfsg dpkg-source: info: unpacking mash_2.1+dfsg.orig.tar.xz dpkg-source: info: unpacking mash_2.1+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying use_debian_mathjax.patch dpkg-source: info: applying drop_memcpy_wrapper.patch dpkg-source: info: applying link_dynamically_against_capnp.patch dpkg-source: info: applying parallel.patch dpkg-source: info: applying capnp0_7.patch dpkg-source: info: applying use_debian_packaged_libmurmurhash.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1984/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1984' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.e0XB61P9dn/pbuilderrc_3vi6 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.e0XB61P9dn/b1 --logfile b1/build.log mash_2.1+dfsg-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink-sled11-arm64 4.4.0-186-generic #216-Ubuntu SMP Wed Jul 1 05:35:21 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 13 02:48 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/1984/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), capnproto (>= 0.6.1), libcapnp-dev (>= 0.6.1), libgsl-dev, zlib1g-dev, python3-sphinx, libjs-mathjax, asciidoctor, libmurmurhash-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on capnproto (>= 0.6.1); however: Package capnproto is not installed. pbuilder-satisfydepends-dummy depends on libcapnp-dev (>= 0.6.1); however: Package libcapnp-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. pbuilder-satisfydepends-dummy depends on asciidoctor; however: Package asciidoctor is not installed. pbuilder-satisfydepends-dummy depends on libmurmurhash-dev; however: Package libmurmurhash-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: asciidoctor{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} capnproto{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcapnp-0.7.0{a} libcapnp-dev{a} libcroco3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgsl-dev{a} libgsl23{a} libgslcblas0{a} libicu63{a} libjs-jquery{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libmurmurhash-dev{a} libmurmurhash1{a} libncurses6{a} libpipeline1{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libruby2.5{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} mime-support{a} openssl{a} po-debconf{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-distutils{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-jinja2{a} python3-lib2to3{a} python3-markupsafe{a} python3-minimal{a} python3-packaging{a} python3-pkg-resources{a} python3-pygments{a} python3-pyparsing{a} python3-requests{a} python3-roman{a} python3-six{a} python3-sphinx{a} python3-tz{a} python3-urllib3{a} python3.7{a} python3.7-minimal{a} rake{a} readline-common{a} ruby{a} ruby-asciidoctor{a} ruby-did-you-mean{a} ruby-minitest{a} ruby-net-telnet{a} ruby-power-assert{a} ruby-test-unit{a} ruby-xmlrpc{a} ruby2.5{a} rubygems-integration{a} sensible-utils{a} sgml-base{a} sphinx-common{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-lato javascript-common libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-pil shared-mime-info wget xdg-user-dirs zip 0 packages upgraded, 102 newly installed, 0 to remove and 0 not upgraded. Need to get 50.0 MB of archives. After unpacking 230 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 libpython3.7-minimal arm64 3.7.3-2+deb10u2 [588 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 python3.7-minimal arm64 3.7.3-2+deb10u2 [1404 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 python3-minimal arm64 3.7.3-1 [36.6 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libmpdec2 arm64 2.4.2-2 [77.7 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 libreadline7 arm64 7.0-5 [134 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libpython3.7-stdlib arm64 3.7.3-2+deb10u2 [1641 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 python3.7 arm64 3.7.3-2+deb10u2 [330 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libpython3-stdlib arm64 3.7.3-1 [20.0 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 python3 arm64 3.7.3-1 [61.5 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 sgml-base all 1.29 [14.8 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 openssl arm64 1.1.1d-0+deb10u3 [823 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 ca-certificates all 20190110 [157 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 rubygems-integration all 1.11+deb10u1 [5212 B] Get: 29 http://deb.debian.org/debian buster/main arm64 rake all 12.3.1-3+deb10u1 [67.1 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 ruby-did-you-mean all 1.2.1-1 [14.4 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 ruby-minitest all 5.11.3-1 [54.8 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 ruby-net-telnet all 0.1.1-2 [12.5 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 ruby-power-assert all 1.1.1-1 [10.9 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 ruby-test-unit all 3.2.8-1 [72.4 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 ruby-xmlrpc all 0.3.0-2 [23.7 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 libyaml-0-2 arm64 0.2.1-1 [41.4 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 libruby2.5 arm64 2.5.5-3+deb10u2 [3303 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 ruby2.5 arm64 2.5.5-3+deb10u2 [400 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 ruby arm64 1:2.5.1 [11.3 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 ruby-asciidoctor all 1.5.8-1 [188 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 asciidoctor all 1.5.8-1 [75.8 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 libcapnp-0.7.0 arm64 0.7.0-3 [915 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 capnproto arm64 0.7.0-3 [213 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 xml-core all 0.18+nmu1 [23.8 kB] Get: 67 http://deb.debian.org/debian buster/main arm64 docutils-common all 0.14+dfsg-4 [167 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 fonts-mathjax all 2.7.4+dfsg-1 [2209 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 libcapnp-dev arm64 0.7.0-3 [1384 kB] Get: 70 http://deb.debian.org/debian buster/main arm64 libgslcblas0 arm64 2.5+dfsg-6 [69.5 kB] Get: 71 http://deb.debian.org/debian buster/main arm64 libgsl23 arm64 2.5+dfsg-6 [760 kB] Get: 72 http://deb.debian.org/debian buster/main arm64 libgsl-dev arm64 2.5+dfsg-6 [938 kB] Get: 73 http://deb.debian.org/debian buster/main arm64 libjs-jquery all 3.3.1~dfsg-3 [332 kB] Get: 74 http://deb.debian.org/debian buster/main arm64 libjs-mathjax all 2.7.4+dfsg-1 [5658 kB] Get: 75 http://deb.debian.org/debian buster/main arm64 libjs-underscore all 1.9.1~dfsg-1 [99.4 kB] Get: 76 http://deb.debian.org/debian buster/main arm64 libjs-sphinxdoc all 1.8.4-1 [95.9 kB] Get: 77 http://deb.debian.org/debian buster/main arm64 libmurmurhash1 arm64 1.3-2 [5684 B] Get: 78 http://deb.debian.org/debian buster/main arm64 libmurmurhash-dev arm64 1.3-2 [9692 B] Get: 79 http://deb.debian.org/debian buster/main arm64 python-babel-localedata all 2.6.0+dfsg.1-1 [4083 kB] Get: 80 http://deb.debian.org/debian buster/main arm64 python3-alabaster all 0.7.8-1 [18.4 kB] Get: 81 http://deb.debian.org/debian buster/main arm64 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 82 http://deb.debian.org/debian buster/main arm64 python3-tz all 2019.1-1 [27.1 kB] Get: 83 http://deb.debian.org/debian buster/main arm64 python3-babel all 2.6.0+dfsg.1-1 [96.7 kB] Get: 84 http://deb.debian.org/debian buster/main arm64 python3-certifi all 2018.8.24-1 [140 kB] Get: 85 http://deb.debian.org/debian buster/main arm64 python3-chardet all 3.0.4-3 [80.5 kB] Get: 86 http://deb.debian.org/debian buster/main arm64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 87 http://deb.debian.org/debian buster/main arm64 python3-distutils all 3.7.3-1 [142 kB] Get: 88 http://deb.debian.org/debian buster/main arm64 python3-roman all 2.0.0-3 [8768 B] Get: 89 http://deb.debian.org/debian buster/main arm64 python3-docutils all 0.14+dfsg-4 [378 kB] Get: 90 http://deb.debian.org/debian buster/main arm64 python3-idna all 2.6-1 [34.3 kB] Get: 91 http://deb.debian.org/debian buster/main arm64 python3-imagesize all 1.0.0-1 [4960 B] Get: 92 http://deb.debian.org/debian buster/main arm64 python3-markupsafe arm64 1.1.0-1 [14.8 kB] Get: 93 http://deb.debian.org/debian buster/main arm64 python3-jinja2 all 2.10-2 [106 kB] Get: 94 http://deb.debian.org/debian buster/main arm64 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get: 95 http://deb.debian.org/debian buster/main arm64 python3-six all 1.12.0-1 [15.7 kB] Get: 96 http://deb.debian.org/debian buster/main arm64 python3-packaging all 19.0-1 [20.5 kB] Get: 97 http://deb.debian.org/debian buster/main arm64 python3-pygments all 2.3.1+dfsg-1 [594 kB] Get: 98 http://deb.debian.org/debian buster/main arm64 python3-urllib3 all 1.24.1-1 [97.1 kB] Get: 99 http://deb.debian.org/debian buster/main arm64 python3-requests all 2.21.0-1 [66.9 kB] Get: 100 http://deb.debian.org/debian buster/main arm64 sphinx-common all 1.8.4-1 [500 kB] Get: 101 http://deb.debian.org/debian buster/main arm64 python3-sphinx all 1.8.4-1 [481 kB] Get: 102 http://deb.debian.org/debian buster/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1 [210 kB] Fetched 50.0 MB in 5s (10.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../1-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../2-libuchardet0_0.0.6-3_arm64.deb ... 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Unpacking libexpat1:arm64 (2.2.6-2+deb10u1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../9-python3.7-minimal_3.7.3-2+deb10u2_arm64.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u2) ... Setting up libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Setting up libpython3.7-minimal:arm64 (3.7.3-2+deb10u2) ... Setting up libexpat1:arm64 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u2) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Unpacking python3-tz (2019.1-1) ... Selecting previously unselected package python3-babel. Preparing to unpack .../64-python3-babel_2.6.0+dfsg.1-1_all.deb ... Unpacking python3-babel (2.6.0+dfsg.1-1) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../65-python3-certifi_2018.8.24-1_all.deb ... Unpacking python3-certifi (2018.8.24-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../66-python3-chardet_3.0.4-3_all.deb ... Unpacking python3-chardet (3.0.4-3) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../67-python3-lib2to3_3.7.3-1_all.deb ... Unpacking python3-lib2to3 (3.7.3-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../68-python3-distutils_3.7.3-1_all.deb ... Unpacking python3-distutils (3.7.3-1) ... Selecting previously unselected package python3-roman. Preparing to unpack .../69-python3-roman_2.0.0-3_all.deb ... Unpacking python3-roman (2.0.0-3) ... Selecting previously unselected package python3-docutils. Preparing to unpack .../70-python3-docutils_0.14+dfsg-4_all.deb ... Unpacking python3-docutils (0.14+dfsg-4) ... Selecting previously unselected package python3-idna. Preparing to unpack .../71-python3-idna_2.6-1_all.deb ... Unpacking python3-idna (2.6-1) ... Selecting previously unselected package python3-imagesize. Preparing to unpack .../72-python3-imagesize_1.0.0-1_all.deb ... Unpacking python3-imagesize (1.0.0-1) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../73-python3-markupsafe_1.1.0-1_arm64.deb ... Unpacking python3-markupsafe (1.1.0-1) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../74-python3-jinja2_2.10-2_all.deb ... Unpacking python3-jinja2 (2.10-2) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../75-python3-pyparsing_2.2.0+dfsg1-2_all.deb ... Unpacking python3-pyparsing (2.2.0+dfsg1-2) ... Selecting previously unselected package python3-six. Preparing to unpack .../76-python3-six_1.12.0-1_all.deb ... Unpacking python3-six (1.12.0-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../77-python3-packaging_19.0-1_all.deb ... Unpacking python3-packaging (19.0-1) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../78-python3-pygments_2.3.1+dfsg-1_all.deb ... Unpacking python3-pygments (2.3.1+dfsg-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../79-python3-urllib3_1.24.1-1_all.deb ... Unpacking python3-urllib3 (1.24.1-1) ... Selecting previously unselected package python3-requests. Preparing to unpack .../80-python3-requests_2.21.0-1_all.deb ... Unpacking python3-requests (2.21.0-1) ... Selecting previously unselected package sphinx-common. Preparing to unpack .../81-sphinx-common_1.8.4-1_all.deb ... Unpacking sphinx-common (1.8.4-1) ... Selecting previously unselected package python3-sphinx. Preparing to unpack .../82-python3-sphinx_1.8.4-1_all.deb ... Unpacking python3-sphinx (1.8.4-1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../83-zlib1g-dev_1%3a1.2.11.dfsg-1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.11.dfsg-1) ... Setting up libpipeline1:arm64 (1.5.1-2) ... Setting up fonts-mathjax (2.7.4+dfsg-1) ... Setting up libmurmurhash1 (1.3-2) ... Setting up mime-support (3.62) ... Setting up libjs-mathjax (2.7.4+dfsg-1) ... Setting up libgslcblas0:arm64 (2.5+dfsg-6) ... Setting up ruby-power-assert (1.1.1-1) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libyaml-0-2:arm64 (0.2.1-1) ... Setting up libglib2.0-0:arm64 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:arm64 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libcapnp-0.7.0:arm64 (0.7.0-3) ... Setting up libicu63:arm64 (63.1-6+deb10u1) ... Setting up python-babel-localedata (2.6.0+dfsg.1-1) ... Setting up ruby-minitest (5.11.3-1) ... Setting up capnproto (0.7.0-3) ... Setting up autotools-dev (20180224.1) ... Setting up ruby-test-unit (3.2.8-1) ... Setting up libgsl23:arm64 (2.5+dfsg-6) ... Setting up libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up sgml-base (1.29) ... Setting up libmpdec2:arm64 (2.4.2-2) ... Setting up libmurmurhash-dev (1.3-2) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up ruby-did-you-mean (1.2.1-1) ... Setting up openssl (1.1.1d-0+deb10u3) ... Setting up libbsd0:arm64 (0.9.1-2) ... Setting up libelf1:arm64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up ruby-xmlrpc (0.3.0-2) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Setting up libcapnp-dev:arm64 (0.7.0-3) ... Setting up libreadline7:arm64 (7.0-5) ... Setting up libjs-underscore (1.9.1~dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libpython3.7-stdlib:arm64 (3.7.3-2+deb10u2) ... Setting up libgsl-dev (2.5+dfsg-6) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:arm64 (0.6.12-3) ... Setting up libjs-sphinxdoc (1.8.4-1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up xml-core (0.18+nmu1) ... Setting up libpython3-stdlib:arm64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u2) ... Setting up gettext (0.19.8.1-9) ... Setting up python3 (3.7.3-1) ... Setting up rubygems-integration (1.11+deb10u1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (1.1.0-1) ... Setting up python3-tz (2019.1-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-six (1.12.0-1) ... Setting up python3-roman (2.0.0-3) ... Setting up python3-jinja2 (2.10-2) ... Setting up python3-pygments (2.3.1+dfsg-1) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up python3-certifi (2018.8.24-1) ... Setting up sphinx-common (1.8.4-1) ... Setting up python3-idna (2.6-1) ... Setting up python3-urllib3 (1.24.1-1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python3-imagesize (1.0.0-1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up python3-babel (2.6.0+dfsg.1-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-alabaster (0.7.8-1) ... Setting up po-debconf (1.0.21) ... Setting up python3-packaging (19.0-1) ... Setting up python3-chardet (3.0.4-3) ... Setting up python3-requests (2.21.0-1) ... Setting up libruby2.5:arm64 (2.5.5-3+deb10u2) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up ruby2.5 (2.5.5-3+deb10u2) ... Setting up debhelper (12.1.1) ... Setting up ruby (1:2.5.1) ... Setting up ruby-asciidoctor (1.5.8-1) ... Setting up rake (12.3.1-3+deb10u1) ... Setting up asciidoctor (1.5.8-1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.14+dfsg-4) ... Processing triggers for sgml-base (1.29) ... Setting up python3-docutils (0.14+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-sphinx (1.8.4-1) ... update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/mash-2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package mash dpkg-buildpackage: info: source version 2.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with sphinxdoc debian/rules override_dh_auto_clean make[1]: Entering directory '/build/mash-2.1+dfsg' dh_auto_clean rm -rf /build/mash-2.1+dfsg/debian/sphinxdoc /build/mash-2.1+dfsg/debian/man make[1]: Leaving directory '/build/mash-2.1+dfsg' dh_clean debian/rules build dh build --with sphinxdoc dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/mash-2.1+dfsg' dh_auto_configure -- --with-capnp=/usr --with-gsl=/usr --prefix=/build/mash-2.1+dfsg/debian/tmp/usr ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-capnp=/usr --with-gsl=/usr --prefix=/build/mash-2.1\+dfsg/debian/tmp/usr configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C++ preprocessor... g++ -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for capnp... yes checking capnp/common.h usability... yes checking capnp/common.h presence... yes checking for capnp/common.h... yes checking gsl/gsl_cdf.h usability... yes checking gsl/gsl_cdf.h presence... yes checking for gsl/gsl_cdf.h... yes configure: creating ./config.status config.status: creating Makefile configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking make[1]: Leaving directory '/build/mash-2.1+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/mash-2.1+dfsg' dh_auto_build make -j8 make[2]: Entering directory '/build/mash-2.1+dfsg' cd src/mash/capnp;export PATH=/usr/bin/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games;capnp compile -I /usr/include -oc++ MinHash.capnp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/Command.o src/mash/Command.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandBounds.o src/mash/CommandBounds.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandContain.o src/mash/CommandContain.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandDistance.o src/mash/CommandDistance.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandScreen.o src/mash/CommandScreen.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandTriangle.o src/mash/CommandTriangle.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandFind.o src/mash/CommandFind.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandInfo.o src/mash/CommandInfo.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandPaste.o src/mash/CommandPaste.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandSketch.o src/mash/CommandSketch.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandList.o src/mash/CommandList.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/hash.o src/mash/hash.cpp src/mash/hash.cpp: In function ‘hash_u getHash(const char*, int, uint32_t, bool)’: src/mash/hash.cpp:23:48: warning: ‘void MurmurHash3_x64_128(const void*, int, uint32_t, void*)’ is deprecated [-Wdeprecated-declarations] MurmurHash3_x64_128(seq, length, seed, data); ^ In file included from src/mash/hash.cpp:8: /usr/include/murmurhash.h:36:1: note: declared here MurmurHash3_x64_128(const void *data, int len, uint32_t seed, void *out); ^~~~~~~~~~~~~~~~~~~ src/mash/hash.cpp:23:48: warning: ‘void MurmurHash3_x64_128(const void*, int, uint32_t, void*)’ is deprecated [-Wdeprecated-declarations] MurmurHash3_x64_128(seq, length, seed, data); ^ In file included from src/mash/hash.cpp:8: /usr/include/murmurhash.h:36:1: note: declared here MurmurHash3_x64_128(const void *data, int len, uint32_t seed, void *out); ^~~~~~~~~~~~~~~~~~~ g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashList.o src/mash/HashList.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashPriorityQueue.o src/mash/HashPriorityQueue.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashSet.o src/mash/HashSet.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/MinHashHeap.o src/mash/MinHashHeap.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/mash.o src/mash/mash.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/Sketch.o src/mash/Sketch.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/sketchParameterSetup.o src/mash/sketchParameterSetup.cpp g++ -c -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/capnp/MinHash.capnp.o src/mash/capnp/MinHash.capnp.c++ g++ -g -O2 -ffile-prefix-map=/build/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o mash src/mash/Command.o src/mash/CommandBounds.o src/mash/CommandContain.o src/mash/CommandDistance.o src/mash/CommandScreen.o src/mash/CommandTriangle.o src/mash/CommandFind.o src/mash/CommandInfo.o src/mash/CommandPaste.o src/mash/CommandSketch.o src/mash/CommandList.o src/mash/hash.o src/mash/HashList.o src/mash/HashPriorityQueue.o src/mash/HashSet.o src/mash/MinHashHeap.o src/mash/mash.o src/mash/Sketch.o src/mash/sketchParameterSetup.o src/mash/capnp/MinHash.capnp.o -lkj -lcapnp -L/usr/lib -lgsl -lgslcblas -lstdc++ -lz -lm -lpthread -lmurmurhash -Wl,-z,relro -Wl,-z,now ar -cr libmash.a src/mash/Command.o src/mash/CommandBounds.o src/mash/CommandContain.o src/mash/CommandDistance.o src/mash/CommandScreen.o src/mash/CommandTriangle.o src/mash/CommandFind.o src/mash/CommandInfo.o src/mash/CommandPaste.o src/mash/CommandSketch.o src/mash/CommandList.o src/mash/hash.o src/mash/HashList.o src/mash/HashPriorityQueue.o src/mash/HashSet.o src/mash/MinHashHeap.o src/mash/mash.o src/mash/Sketch.o src/mash/sketchParameterSetup.o src/mash/capnp/MinHash.capnp.o ranlib libmash.a make[2]: Leaving directory '/build/mash-2.1+dfsg' sphinx-build doc/sphinx /build/mash-2.1+dfsg/debian/sphinxdoc Running Sphinx v1.8.4 making output directory... building [mo]: targets for 0 po files that are out of date building [html]: targets for 5 source files that are out of date updating environment: 5 added, 0 changed, 0 removed reading sources... [ 20%] data reading sources... [ 40%] distances reading sources... [ 60%] index reading sources... [ 80%] sketches reading sources... [100%] tutorials /build/mash-2.1+dfsg/doc/sphinx/tutorials.rst:9: WARNING: Unknown directive type "download". .. download:: /build/mash-2.1+dfsg/doc/sphinx/tutorials.rst:10: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/mash-2.1+dfsg/doc/sphinx/tutorials.rst:66: WARNING: Unknown directive type "download". .. download:: /build/mash-2.1+dfsg/doc/sphinx/tutorials.rst:72: WARNING: Unknown directive type "download". .. download:: looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 20%] data writing output... [ 40%] distances writing output... [ 60%] index writing output... [ 80%] sketches writing output... [100%] tutorials generating indices... genindex writing additional pages... search copying images... [100%] logo_med.png copying static files... WARNING: html_static_path entry '/build/mash-2.1+dfsg/doc/sphinx/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 5 warnings. The HTML pages are in debian/sphinxdoc. make[1]: Leaving directory '/build/mash-2.1+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/mash-2.1+dfsg' dh_auto_test --no-parallel make -j1 test VERBOSE=1 make[2]: Entering directory '/build/mash-2.1+dfsg' cd test ; ../mash sketch -o genomes.msh genome1.fna genome2.fna genome3.fna Sketching genome1.fna... Sketching genome2.fna... Sketching genome3.fna... Writing to genomes.msh... cd test ; ../mash sketch -r -I reads reads1.fastq reads2.fastq -o reads.msh Estimated genome size: 502360 Estimated coverage: 1.115 Writing to reads.msh... ./mash info -d test/genomes.msh > test/genomes.json ./mash info -d test/reads.msh > test/reads.json diff test/genomes.json test/ref/genomes.json diff test/reads.json test/ref/reads.json ./mash dist test/genomes.msh test/reads.msh > test/genomes.dist diff test/genomes.dist test/ref/genomes.dist cd test ; ../mash screen genomes.msh reads1.fastq reads2.fastq > screen Loading genomes.msh... 1419 distinct hashes. Streaming from 2 inputs... Estimated distinct k-mers in pool: 502359 Summing shared... Computing coverage medians... Writing output... diff test/screen test/ref/screen make[2]: Leaving directory '/build/mash-2.1+dfsg' make[1]: Leaving directory '/build/mash-2.1+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with sphinxdoc dh_testroot dh_prep dh_auto_install make -j8 install DESTDIR=/build/mash-2.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/mash-2.1+dfsg' mkdir -p /build/mash-2.1+dfsg/debian/tmp/usr/bin/ mkdir -p /build/mash-2.1+dfsg/debian/tmp/usr/lib/ mkdir -p /build/mash-2.1+dfsg/debian/tmp/usr/include/ mkdir -p /build/mash-2.1+dfsg/debian/tmp/usr/include/mash mkdir -p /build/mash-2.1+dfsg/debian/tmp/usr/include/mash/capnp cp `pwd`/mash /build/mash-2.1+dfsg/debian/tmp/usr/bin/ cp `pwd`/libmash.a /build/mash-2.1+dfsg/debian/tmp/usr/lib/ cp `pwd`/src/mash/*.h /build/mash-2.1+dfsg/debian/tmp/usr/include/mash/ cp `pwd`/src/mash/capnp/MinHash.capnp.h /build/mash-2.1+dfsg/debian/tmp/usr/include/mash/capnp/ make[1]: Leaving directory '/build/mash-2.1+dfsg' dh_install dh_installdocs dh_sphinxdoc dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/mash-2.1+dfsg' mkdir -p /build/mash-2.1+dfsg/debian/man asciidoctor -a docdate='' -b manpage /build/mash-2.1+dfsg/debian/man_src/*.adoc cp /build/mash-2.1+dfsg/debian/man_src/*.? /build/mash-2.1+dfsg/debian/man dh_installman -- make[1]: Leaving directory '/build/mash-2.1+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mash/usr/bin/mash was not linked against libgslcblas.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mash/usr/bin/mash was not linked against libkj-0.7.0.so (it uses none of the library's symbols) dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libmash-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package mash-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dpkg-gencontrol: warning: package mash-doc: substitution variable ${sphinxdoc:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'libmash-dev' in '../libmash-dev_2.1+dfsg-2_arm64.deb'. dpkg-deb: building package 'mash-dbgsym' in '../mash-dbgsym_2.1+dfsg-2_arm64.deb'. dpkg-deb: building package 'mash' in '../mash_2.1+dfsg-2_arm64.deb'. dpkg-deb: building package 'mash-doc' in '../mash-doc_2.1+dfsg-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../mash_2.1+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1984 and its subdirectories I: Current time: Tue Sep 14 01:27:34 -12 2021 I: pbuilder-time-stamp: 1631626054