I: pbuilder: network access will be disabled during build I: Current time: Mon Aug 9 21:58:29 -12 2021 I: pbuilder-time-stamp: 1628589509 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [librcsb-core-wrapper_1.005-6.dsc] I: copying [./librcsb-core-wrapper_1.005.orig.tar.gz] I: copying [./librcsb-core-wrapper_1.005-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Jan 18 10:16:53 2019 -12 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./librcsb-core-wrapper_1.005-6.dsc dpkg-source: info: extracting librcsb-core-wrapper in librcsb-core-wrapper-1.005 dpkg-source: info: unpacking librcsb-core-wrapper_1.005.orig.tar.gz dpkg-source: info: unpacking librcsb-core-wrapper_1.005-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying wrapper-module dpkg-source: info: applying rm-duplicate-module dpkg-source: info: applying bash dpkg-source: info: applying unistd dpkg-source: info: applying devnull-log dpkg-source: info: applying docs dpkg-source: info: applying objectfiles dpkg-source: info: applying parallel-build dpkg-source: info: applying setup.py.in dpkg-source: info: applying hardening dpkg-source: info: applying spelling dpkg-source: info: applying exit-in-shlib dpkg-source: info: applying make_test_target dpkg-source: info: applying regcomp_cert_fix.patch dpkg-source: info: applying gcc5.patch dpkg-source: info: applying xerces32.patch dpkg-source: info: applying gcc-8.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/7506/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='7506' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.PqM51RujBI/pbuilderrc_N7hV --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.PqM51RujBI/b1 --logfile b1/build.log librcsb-core-wrapper_1.005-6.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink-sled9-arm64 4.4.0-184-generic #214-Ubuntu SMP Wed Jun 3 11:41:03 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 8 02:49 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/7506/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 10), doxygen, graphviz, dh-python, libboost-python-dev, libxerces-c-dev, python-all-dev, libtool, libtool-bin, bison, flex dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 10); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libxerces-c-dev; however: Package libxerces-c-dev is not installed. pbuilder-satisfydepends-dummy depends on python-all-dev; however: Package python-all-dev is not installed. pbuilder-satisfydepends-dummy depends on libtool; however: Package libtool is not installed. pbuilder-satisfydepends-dummy depends on libtool-bin; however: Package libtool-bin is not installed. pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bison{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} flex{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libbison-dev{a} libboost-python-dev{a} libboost-python1.67-dev{a} libboost-python1.67.0{a} libboost1.67-dev{a} libbsd0{a} libcairo2{a} libcdt5{a} libcgraph6{a} libclang1-6.0{a} libcroco3{a} libcurl3-gnutls{a} libdatrie1{a} libedit2{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgd3{a} libglib2.0-0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgts-0.7-5{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libice6{a} libicu-dev{a} libicu63{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} libldap-2.4-2{a} libldap-common{a} libllvm6.0{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libnghttp2-14{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpsl5{a} libpython-all-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libssl1.1{a} libthai-data{a} libthai0{a} libtiff5{a} libtool{a} libtool-bin{a} libuchardet0{a} libwebp6{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxdot4{a} libxerces-c-dev{a} libxerces-c3.2{a} libxext6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} lsb-base{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-all{a} python-all-dev{a} python-dev{a} python-minimal{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} ucf{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-liberation krb5-locales libarchive-cpio-perl libfl-dev libglib2.0-data libgpm2 libgts-bin libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 155 newly installed, 0 to remove and 0 not upgraded. Need to get 125 MB of archives. After unpacking 534 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 libpython2.7-minimal arm64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 python2.7-minimal arm64 2.7.16-2+deb10u1 [1292 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 python2-minimal arm64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 python-minimal arm64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 libreadline7 arm64 7.0-5 [134 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libpython2.7-stdlib arm64 2.7.16-2+deb10u1 [1890 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 python2.7 arm64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libpython2-stdlib arm64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 libpython-stdlib arm64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 python2 arm64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 python arm64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 flex arm64 2.6.4-6.2 [446 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 libpython3.7-minimal arm64 3.7.3-2+deb10u1 [588 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 python3.7-minimal arm64 3.7.3-2+deb10u1 [1404 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 python3-minimal arm64 3.7.3-1 [36.6 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 libmpdec2 arm64 2.4.2-2 [77.7 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 libpython3.7-stdlib arm64 3.7.3-2+deb10u1 [1640 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 python3.7 arm64 3.7.3-2+deb10u1 [330 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 libpython3-stdlib arm64 3.7.3-1 [20.0 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 python3 arm64 3.7.3-1 [61.5 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 ucf all 3.0038+nmu1 [69.0 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 libbison-dev arm64 2:3.3.2.dfsg-1 [500 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 bison arm64 2:3.3.2.dfsg-1 [855 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 python3-distutils all 3.7.3-1 [142 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 dh-python all 3.20190308 [99.3 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 libedit2 arm64 3.1-20181209-1 [91.2 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 libllvm6.0 arm64 1:6.0.1-10 [13.1 MB] Get: 66 http://deb.debian.org/debian buster/main arm64 libclang1-6.0 arm64 1:6.0.1-10 [6190 kB] Get: 67 http://deb.debian.org/debian buster/main arm64 doxygen arm64 1.8.13-10 [3701 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 libpng16-16 arm64 1.6.36-6 [287 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 libfreetype6 arm64 2.9.1-3+deb10u1 [355 kB] Get: 70 http://deb.debian.org/debian buster/main arm64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 71 http://deb.debian.org/debian buster/main arm64 fontconfig-config all 2.13.1-2 [280 kB] Get: 72 http://deb.debian.org/debian buster/main arm64 libfontconfig1 arm64 2.13.1-2 [343 kB] Get: 73 http://deb.debian.org/debian buster/main arm64 fontconfig arm64 2.13.1-2 [405 kB] Get: 74 http://deb.debian.org/debian buster/main arm64 libpixman-1-0 arm64 0.36.0-1 [436 kB] Get: 75 http://deb.debian.org/debian buster/main arm64 libxau6 arm64 1:1.0.8-1+b2 [19.3 kB] Get: 76 http://deb.debian.org/debian buster/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 77 http://deb.debian.org/debian buster/main arm64 libxcb1 arm64 1.13.1-2 [135 kB] Get: 78 http://deb.debian.org/debian buster/main arm64 libx11-data all 2:1.6.7-1 [298 kB] Get: 79 http://deb.debian.org/debian buster/main arm64 libx11-6 arm64 2:1.6.7-1 [735 kB] Get: 80 http://deb.debian.org/debian buster/main arm64 libxcb-render0 arm64 1.13.1-2 [108 kB] Get: 81 http://deb.debian.org/debian buster/main arm64 libxcb-shm0 arm64 1.13.1-2 [99.3 kB] Get: 82 http://deb.debian.org/debian buster/main arm64 libxext6 arm64 2:1.3.3-1+b2 [48.6 kB] Get: 83 http://deb.debian.org/debian buster/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB] Get: 84 http://deb.debian.org/debian buster/main arm64 libcairo2 arm64 1.16.0-4 [644 kB] Get: 85 http://deb.debian.org/debian buster/main arm64 libcdt5 arm64 2.40.1-6 [59.6 kB] Get: 86 http://deb.debian.org/debian buster/main arm64 libcgraph6 arm64 2.40.1-6 [81.8 kB] Get: 87 http://deb.debian.org/debian buster/main arm64 libjpeg62-turbo arm64 1:1.5.2-2+b1 [115 kB] Get: 88 http://deb.debian.org/debian buster/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get: 89 http://deb.debian.org/debian buster/main arm64 libwebp6 arm64 0.6.1-2 [233 kB] Get: 90 http://deb.debian.org/debian buster/main arm64 libtiff5 arm64 4.1.0+git191117-2~deb10u1 [259 kB] Get: 91 http://deb.debian.org/debian buster/main arm64 libxpm4 arm64 1:3.5.12-1 [43.9 kB] Get: 92 http://deb.debian.org/debian buster/main arm64 libgd3 arm64 2.2.5-5.2 [125 kB] Get: 93 http://deb.debian.org/debian buster/main arm64 libgts-0.7-5 arm64 0.7.6+darcs121130-4 [125 kB] Get: 94 http://deb.debian.org/debian buster/main arm64 libltdl7 arm64 2.4.6-9 [389 kB] Get: 95 http://deb.debian.org/debian buster/main arm64 libfribidi0 arm64 1.0.5-3.1+deb10u1 [63.6 kB] Get: 96 http://deb.debian.org/debian buster/main arm64 libthai-data all 0.1.28-2 [170 kB] Get: 97 http://deb.debian.org/debian buster/main arm64 libdatrie1 arm64 0.2.12-2 [38.6 kB] Get: 98 http://deb.debian.org/debian buster/main arm64 libthai0 arm64 0.1.28-2 [52.8 kB] Get: 99 http://deb.debian.org/debian buster/main arm64 libpango-1.0-0 arm64 1.42.4-8~deb10u1 [179 kB] Get: 100 http://deb.debian.org/debian buster/main arm64 libgraphite2-3 arm64 1.3.13-7 [75.8 kB] Get: 101 http://deb.debian.org/debian buster/main arm64 libharfbuzz0b arm64 2.3.1-1 [1155 kB] Get: 102 http://deb.debian.org/debian buster/main arm64 libpangoft2-1.0-0 arm64 1.42.4-8~deb10u1 [65.7 kB] Get: 103 http://deb.debian.org/debian buster/main arm64 libpangocairo-1.0-0 arm64 1.42.4-8~deb10u1 [54.0 kB] Get: 104 http://deb.debian.org/debian buster/main arm64 libpathplan4 arm64 2.40.1-6 [61.9 kB] Get: 105 http://deb.debian.org/debian buster/main arm64 libxdot4 arm64 2.40.1-6 [57.0 kB] Get: 106 http://deb.debian.org/debian buster/main arm64 libgvc6 arm64 2.40.1-6 [590 kB] Get: 107 http://deb.debian.org/debian buster/main arm64 libgvpr2 arm64 2.40.1-6 [204 kB] Get: 108 http://deb.debian.org/debian buster/main arm64 lsb-base all 10.2019051400 [28.4 kB] Get: 109 http://deb.debian.org/debian buster/main arm64 x11-common all 1:7.7+19 [251 kB] Get: 110 http://deb.debian.org/debian buster/main arm64 libice6 arm64 2:1.0.9-2 [52.0 kB] Get: 111 http://deb.debian.org/debian buster/main arm64 liblab-gamut1 arm64 2.40.1-6 [220 kB] Get: 112 http://deb.debian.org/debian buster/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get: 113 http://deb.debian.org/debian buster/main arm64 libxt6 arm64 1:1.1.5-1+b3 [175 kB] Get: 114 http://deb.debian.org/debian buster/main arm64 libxmu6 arm64 2:1.1.2-2+b3 [57.8 kB] Get: 115 http://deb.debian.org/debian buster/main arm64 libxaw7 arm64 2:1.0.13-1+b2 [167 kB] Get: 116 http://deb.debian.org/debian buster/main arm64 graphviz arm64 2.40.1-6 [560 kB] Get: 117 http://deb.debian.org/debian buster/main arm64 icu-devtools arm64 63.1-6+deb10u1 [179 kB] Get: 118 http://deb.debian.org/debian buster/main arm64 libboost1.67-dev arm64 1.67.0-13+deb10u1 [8388 kB] Get: 119 http://deb.debian.org/debian buster/main arm64 libboost-python1.67.0 arm64 1.67.0-13+deb10u1 [316 kB] Get: 120 http://deb.debian.org/debian buster/main arm64 libpython2.7 arm64 2.7.16-2+deb10u1 [958 kB] Get: 121 http://deb.debian.org/debian buster/main arm64 libexpat1-dev arm64 2.2.6-2+deb10u1 [128 kB] Get: 122 http://deb.debian.org/debian buster/main arm64 libpython2.7-dev arm64 2.7.16-2+deb10u1 [31.5 MB] Get: 123 http://deb.debian.org/debian buster/main arm64 libpython2-dev arm64 2.7.16-1 [20.9 kB] Get: 124 http://deb.debian.org/debian buster/main arm64 libpython-dev arm64 2.7.16-1 [20.9 kB] Get: 125 http://deb.debian.org/debian buster/main arm64 python2.7-dev arm64 2.7.16-2+deb10u1 [296 kB] Get: 126 http://deb.debian.org/debian buster/main arm64 python2-dev arm64 2.7.16-1 [1216 B] Get: 127 http://deb.debian.org/debian buster/main arm64 python-dev arm64 2.7.16-1 [1192 B] Get: 128 http://deb.debian.org/debian buster/main arm64 libpython3.7 arm64 3.7.3-2+deb10u1 [1371 kB] Get: 129 http://deb.debian.org/debian buster/main arm64 libpython3.7-dev arm64 3.7.3-2+deb10u1 [2379 kB] Get: 130 http://deb.debian.org/debian buster/main arm64 libpython3-dev arm64 3.7.3-1 [20.1 kB] Get: 131 http://deb.debian.org/debian buster/main arm64 python3.7-dev arm64 3.7.3-2+deb10u1 [509 kB] Get: 132 http://deb.debian.org/debian buster/main arm64 python3-dev arm64 3.7.3-1 [1264 B] Get: 133 http://deb.debian.org/debian buster/main arm64 libboost-python1.67-dev arm64 1.67.0-13+deb10u1 [329 kB] Get: 134 http://deb.debian.org/debian buster/main arm64 libboost-python-dev arm64 1.67.0.1 [3948 B] Get: 135 http://deb.debian.org/debian buster/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get: 136 http://deb.debian.org/debian buster/main arm64 libkrb5support0 arm64 1.17-3 [64.7 kB] Get: 137 http://deb.debian.org/debian buster/main arm64 libk5crypto3 arm64 1.17-3 [122 kB] Get: 138 http://deb.debian.org/debian buster/main arm64 libkrb5-3 arm64 1.17-3 [353 kB] Get: 139 http://deb.debian.org/debian buster/main arm64 libgssapi-krb5-2 arm64 1.17-3 [150 kB] Get: 140 http://deb.debian.org/debian buster/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-1+deb10u1 [69.3 kB] Get: 141 http://deb.debian.org/debian buster/main arm64 libsasl2-2 arm64 2.1.27+dfsg-1+deb10u1 [105 kB] Get: 142 http://deb.debian.org/debian buster/main arm64 libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 143 http://deb.debian.org/debian buster/main arm64 libldap-2.4-2 arm64 2.4.47+dfsg-3+deb10u2 [216 kB] Get: 144 http://deb.debian.org/debian buster/main arm64 libnghttp2-14 arm64 1.36.0-2+deb10u1 [81.9 kB] Get: 145 http://deb.debian.org/debian buster/main arm64 libpsl5 arm64 0.20.2-2 [53.6 kB] Get: 146 http://deb.debian.org/debian buster/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [55.7 kB] Get: 147 http://deb.debian.org/debian buster/main arm64 libssh2-1 arm64 1.8.0-2.1 [135 kB] Get: 148 http://deb.debian.org/debian buster/main arm64 libcurl3-gnutls arm64 7.64.0-4+deb10u1 [310 kB] Get: 149 http://deb.debian.org/debian buster/main arm64 libicu-dev arm64 63.1-6+deb10u1 [9062 kB] Get: 150 http://deb.debian.org/debian buster/main arm64 libpython-all-dev arm64 2.7.16-1 [1064 B] Get: 151 http://deb.debian.org/debian buster/main arm64 libtool-bin arm64 2.4.6-9 [431 kB] Get: 152 http://deb.debian.org/debian buster/main arm64 libxerces-c3.2 arm64 3.2.2+debian-1+b1 [783 kB] Get: 153 http://deb.debian.org/debian buster/main arm64 libxerces-c-dev arm64 3.2.2+debian-1+b1 [1626 kB] Get: 154 http://deb.debian.org/debian buster/main arm64 python-all arm64 2.7.16-1 [1044 B] Get: 155 http://deb.debian.org/debian buster/main arm64 python-all-dev arm64 2.7.16-1 [1068 B] Fetched 125 MB in 5s (23.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_arm64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../04-libpipeline1_1.5.1-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_arm64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:arm64. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_arm64.deb ... Unpacking libpython2.7-minimal:arm64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_arm64.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../08-python2-minimal_2.7.16-1_arm64.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../09-python-minimal_2.7.16-1_arm64.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:arm64. Preparing to unpack .../10-libssl1.1_1.1.1d-0+deb10u3_arm64.deb ... Unpacking libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Selecting previously unselected package mime-support. Preparing to unpack .../11-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../12-libexpat1_2.2.6-2+deb10u1_arm64.deb ... Unpacking libexpat1:arm64 (2.2.6-2+deb10u1) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:arm64. Preparing to unpack .../14-libreadline7_7.0-5_arm64.deb ... Unpacking libreadline7:arm64 (7.0-5) ... Selecting previously unselected package libpython2.7-stdlib:arm64. Preparing to unpack .../15-libpython2.7-stdlib_2.7.16-2+deb10u1_arm64.deb ... Unpacking libpython2.7-stdlib:arm64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../16-python2.7_2.7.16-2+deb10u1_arm64.deb ... Unpacking python2.7 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-stdlib:arm64. Preparing to unpack .../17-libpython2-stdlib_2.7.16-1_arm64.deb ... Unpacking libpython2-stdlib:arm64 (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:arm64. Preparing to unpack .../18-libpython-stdlib_2.7.16-1_arm64.deb ... Unpacking libpython-stdlib:arm64 (2.7.16-1) ... Setting up libpython2.7-minimal:arm64 (2.7.16-2+deb10u1) ... Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20631 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_arm64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20664 files and directories currently installed.) Preparing to unpack .../0-python_2.7.16-1_arm64.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../1-libsigsegv2_2.12-2_arm64.deb ... Unpacking libsigsegv2:arm64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../2-m4_1.4.18-2_arm64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package flex. Preparing to unpack .../3-flex_2.6.4-6.2_arm64.deb ... Unpacking flex (2.6.4-6.2) ... Selecting previously unselected package libpython3.7-minimal:arm64. Preparing to unpack .../4-libpython3.7-minimal_3.7.3-2+deb10u1_arm64.deb ... Unpacking libpython3.7-minimal:arm64 (3.7.3-2+deb10u1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../5-python3.7-minimal_3.7.3-2+deb10u1_arm64.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u1) ... Setting up libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Setting up libpython3.7-minimal:arm64 (3.7.3-2+deb10u1) ... Setting up libexpat1:arm64 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21085 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.7.3-1_arm64.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package libmpdec2:arm64. Preparing to unpack .../libmpdec2_2.4.2-2_arm64.deb ... Unpacking libmpdec2:arm64 (2.4.2-2) ... Selecting previously unselected package libpython3.7-stdlib:arm64. Preparing to unpack .../libpython3.7-stdlib_3.7.3-2+deb10u1_arm64.deb ... Unpacking libpython3.7-stdlib:arm64 (3.7.3-2+deb10u1) ... Selecting previously unselected package python3.7. Preparing to unpack .../python3.7_3.7.3-2+deb10u1_arm64.deb ... Unpacking python3.7 (3.7.3-2+deb10u1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../libpython3-stdlib_3.7.3-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21497 files and directories currently installed.) Preparing to unpack .../000-python3_3.7.3-1_arm64.deb ... Unpacking python3 (3.7.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../003-libmagic1_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.19.8.1-9_arm64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package ucf. Preparing to unpack .../006-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package autoconf. Preparing to unpack .../007-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../008-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... 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Selecting previously unselected package libxerces-c3.2:arm64. Preparing to unpack .../120-libxerces-c3.2_3.2.2+debian-1+b1_arm64.deb ... Unpacking libxerces-c3.2:arm64 (3.2.2+debian-1+b1) ... Selecting previously unselected package libxerces-c-dev. Preparing to unpack .../121-libxerces-c-dev_3.2.2+debian-1+b1_arm64.deb ... Unpacking libxerces-c-dev (3.2.2+debian-1+b1) ... Selecting previously unselected package python-all. Preparing to unpack .../122-python-all_2.7.16-1_arm64.deb ... Unpacking python-all (2.7.16-1) ... Selecting previously unselected package python-all-dev. Preparing to unpack .../123-python-all-dev_2.7.16-1_arm64.deb ... Unpacking python-all-dev (2.7.16-1) ... Setting up libboost1.67-dev:arm64 (1.67.0-13+deb10u1) ... Setting up libpipeline1:arm64 (1.5.1-2) ... Setting up libxdot4 (2.40.1-6) ... Setting up libgraphite2-3:arm64 (1.3.13-7) ... Setting up libpixman-1-0:arm64 (0.36.0-1) ... Setting up lsb-base (10.2019051400) ... Setting up libxau6:arm64 (1:1.0.8-1+b2) ... Setting up libkeyutils1:arm64 (1.6-6) ... Setting up libpsl5:arm64 (0.20.2-2) ... Setting up mime-support (3.62) ... Setting up libbison-dev:arm64 (2:3.3.2.dfsg-1) ... Setting up libdatrie1:arm64 (0.2.12-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:arm64 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up liblab-gamut1 (2.40.1-6) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:arm64 (1.36.0-2+deb10u1) ... Setting up libmagic1:arm64 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u2) ... Setting up libjbig0:arm64 (2.1-3.1+b2) ... Setting up libicu63:arm64 (63.1-6+deb10u1) ... Setting up libkrb5support0:arm64 (1.17-3) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-1+deb10u1) ... Setting up libgts-0.7-5:arm64 (0.7.6+darcs121130-4) ... Setting up autotools-dev (20180224.1) ... Setting up libexpat1-dev:arm64 (2.2.6-2+deb10u1) ... Setting up libjpeg62-turbo:arm64 (1:1.5.2-2+b1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libpathplan4 (2.40.1-6) ... Setting up libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up libfribidi0:arm64 (1.0.5-3.1+deb10u1) ... Setting up libpng16-16:arm64 (1.6.36-6) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:arm64 (0.6.1-2) ... Setting up icu-devtools (63.1-6+deb10u1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libk5crypto3:arm64 (1.17-3) ... Setting up libltdl7:arm64 (2.4.6-9) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-1+deb10u1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up libboost-python1.67.0 (1.67.0-13+deb10u1) ... Setting up libthai-data (0.1.28-2) ... Setting up libssh2-1:arm64 (1.8.0-2.1) ... Setting up libcdt5 (2.40.1-6) ... Setting up libkrb5-3:arm64 (1.17-3) ... Setting up libcgraph6 (2.40.1-6) ... Setting up libtiff5:arm64 (4.1.0+git191117-2~deb10u1) ... Setting up libmpdec2:arm64 (2.4.2-2) ... Setting up libbsd0:arm64 (0.9.1-2) ... Setting up libelf1:arm64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libicu-dev:arm64 (63.1-6+deb10u1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Setting up libreadline7:arm64 (7.0-5) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libice6:arm64 (2:1.0.9-2) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up libpython3.7-stdlib:arm64 (3.7.3-2+deb10u1) ... Setting up libxcb1:arm64 (1.13.1-2) ... Setting up libpython3.7:arm64 (3.7.3-2+deb10u1) ... Setting up libtool (2.4.6-9) ... Setting up libxcb-render0:arm64 (1.13.1-2) ... Setting up libpython3.7-dev:arm64 (3.7.3-2+deb10u1) ... Setting up libedit2:arm64 (3.1-20181209-1) ... Setting up libldap-2.4-2:arm64 (2.4.47+dfsg-3+deb10u2) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-shm0:arm64 (1.13.1-2) ... Setting up libllvm6.0:arm64 (1:6.0.1-10) ... Setting up libclang1-6.0:arm64 (1:6.0.1-10) ... Setting up libpython2.7-stdlib:arm64 (2.7.16-2+deb10u1) ... Setting up libthai0:arm64 (0.1.28-2) ... Setting up doxygen (1.8.13-10) ... Setting up libfreetype6:arm64 (2.9.1-3+deb10u1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:arm64 (1.17-3) ... Setting up libcroco3:arm64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up libgvpr2 (2.40.1-6) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up bison (2:3.3.2.dfsg-1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libx11-6:arm64 (2:1.6.7-1) ... Setting up libharfbuzz0b:arm64 (2.3.1-1) ... Setting up libsm6:arm64 (2:1.2.3-1) ... Setting up libpython3-stdlib:arm64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u1) ... Setting up libtool-bin (2.4.6-9) ... Setting up libpython2.7:arm64 (2.7.16-2+deb10u1) ... Setting up flex (2.6.4-6.2) ... Setting up libpython2.7-dev:arm64 (2.7.16-2+deb10u1) ... Setting up gettext (0.19.8.1-9) ... Setting up libpython3-dev:arm64 (3.7.3-1) ... Setting up libxpm4:arm64 (1:3.5.12-1) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up libpython2-stdlib:arm64 (2.7.16-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libxext6:arm64 (2:1.3.3-1+b2) ... Setting up libcurl3-gnutls:arm64 (7.64.0-4+deb10u1) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up python3.7-dev (3.7.3-2+deb10u1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:arm64 (2.7.16-1) ... Setting up libxt6:arm64 (1:1.1.5-1+b3) ... Setting up libpython2-dev:arm64 (2.7.16-1) ... Setting up libfontconfig1:arm64 (2.13.1-2) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python2.7-dev (2.7.16-2+deb10u1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libxmu6:arm64 (2:1.1.2-2+b3) ... Setting up libxerces-c3.2:arm64 (3.2.2+debian-1+b1) ... Setting up python2-dev (2.7.16-1) ... Setting up po-debconf (1.0.21) ... Setting up libpango-1.0-0:arm64 (1.42.4-8~deb10u1) ... Setting up libxaw7:arm64 (2:1.0.13-1+b2) ... Setting up python-all (2.7.16-1) ... Setting up libcairo2:arm64 (1.16.0-4) ... Setting up libpython-dev:arm64 (2.7.16-1) ... Setting up libxerces-c-dev (3.2.2+debian-1+b1) ... Setting up python3-dev (3.7.3-1) ... Setting up libgd3:arm64 (2.2.5-5.2) ... Setting up libpangoft2-1.0-0:arm64 (1.42.4-8~deb10u1) ... Setting up libpangocairo-1.0-0:arm64 (1.42.4-8~deb10u1) ... Setting up python-dev (2.7.16-1) ... Setting up libpython-all-dev:arm64 (2.7.16-1) ... Setting up libgvc6 (2.40.1-6) ... Setting up python-all-dev (2.7.16-1) ... Setting up libboost-python1.67-dev (1.67.0-13+deb10u1) ... Setting up graphviz (2.40.1-6) ... Setting up libboost-python-dev (1.67.0.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up debhelper (12.1.1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/librcsb-core-wrapper-1.005/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package librcsb-core-wrapper dpkg-buildpackage: info: source version 1.005-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with python2 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/librcsb-core-wrapper-1.005' dh_auto_clean make -j8 clean make[2]: Entering directory '/build/librcsb-core-wrapper-1.005' rm -rf docs rm -rf rcsb ------------------------------------------------------------ **** Cleaning etc **** ------------------------------------------------------------ ------------------------------------------------------------ **** Cleaning common **** ------------------------------------------------------------ ------------------------------------------------------------ **** Cleaning test results in dict-obj-file **** ------------------------------------------------------------ make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/common' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/dict-obj-file' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/dict-obj-file' ------------------------------------------------------------ **** Cleaning test results in pdbml-parser **** ------------------------------------------------------------ make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/pdbml-parser' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/common' ------------------------------------------------------------ **** Cleaning tables **** ------------------------------------------------------------ make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/tables' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/pdbml-parser' make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/tables' ------------------------------------------------------------ **** Cleaning regex **** ------------------------------------------------------------ make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/regex' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/regex' ------------------------------------------------------------ **** Cleaning cif-file **** ------------------------------------------------------------ make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/cif-file' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/cif-file' ------------------------------------------------------------ **** Cleaning cif-parser **** ------------------------------------------------------------ make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/cif-parser' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/cif-parser' ------------------------------------------------------------ **** Cleaning cif-file-util **** ------------------------------------------------------------ make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/cif-file-util' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/cif-file-util' ------------------------------------------------------------ **** Cleaning dict-obj-file **** ------------------------------------------------------------ make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/dict-obj-file' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/dict-obj-file' ------------------------------------------------------------ **** Cleaning pdbml-parser **** ------------------------------------------------------------ make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/pdbml-parser' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/pdbml-parser' ------------------------------------------------------------ **** Cleaning cctbx **** ------------------------------------------------------------ make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/cctbx' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/cctbx' make[2]: Leaving directory '/build/librcsb-core-wrapper-1.005' rm -rf wrapper/python/build make[1]: Leaving directory '/build/librcsb-core-wrapper-1.005' dh_clean debian/rules build dh build --with python2 dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/librcsb-core-wrapper-1.005' dh_auto_build make -j8 make[2]: Entering directory '/build/librcsb-core-wrapper-1.005' sh -c '\ export PIC=-fPIC; \ export WWPDB_XERCESC_INC=/usr/include; \ export WWPDB_XERCESC_LIB_DIR=/usr/lib; \ export WWPDB_XERCESC_LIB=xerces-c; \ ( cd ./util; ./compile.sh ); \ libtool --mode=link g++ -version-info 0:1:0 -rpath /usr/lib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -l${WWPDB_XERCESC_LIB} -o lib/librcsb-core-wrapper.la lib/*.lo' ------------------------------------------------------------ **** Making etc **** ------------------------------------------------------------ Using platform specific configuration for system: gnu4 Platform configuration done. ------------------------------------------------------------ **** Making common **** ------------------------------------------------------------ make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/common' libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/RcsbPlatform.C -o ./obj/RcsbPlatform.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/RcsbFile.C -o ./obj/RcsbFile.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/BlockIO.C -o ./obj/BlockIO.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/Serializer.C -o ./obj/Serializer.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/GenString.C -o ./obj/GenString.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifString.C -o ./obj/CifString.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/GenCont.C -o ./obj/GenCont.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/Exceptions.C -o ./obj/Exceptions.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/RcsbFile.C -fPIC -DPIC -o ./obj/.libs/RcsbFile.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/RcsbPlatform.C -fPIC -DPIC -o ./obj/.libs/RcsbPlatform.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/BlockIO.C -fPIC -DPIC -o ./obj/.libs/BlockIO.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/Serializer.C -fPIC -DPIC -o ./obj/.libs/Serializer.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/GenString.C -fPIC -DPIC -o ./obj/.libs/GenString.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifString.C -fPIC -DPIC -o ./obj/.libs/CifString.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/GenCont.C -fPIC -DPIC -o ./obj/.libs/GenCont.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/Exceptions.C -fPIC -DPIC -o ./obj/.libs/Exceptions.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/RcsbPlatform.C -o ./obj/RcsbPlatform.o >/dev/null 2>&1 libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DataInfo.C -o ./obj/DataInfo.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DataInfo.C -fPIC -DPIC -o ./obj/.libs/DataInfo.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/BlockIO.C -o ./obj/BlockIO.o >/dev/null 2>&1 src/GenString.C: In static member function 'static bool String::IsNumber(const string&)': src/GenString.C:539:12: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] catch (exception) ^~~~~~~~~ libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/Exceptions.C -o ./obj/Exceptions.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/RcsbFile.C -o ./obj/RcsbFile.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/GenCont.C -o ./obj/GenCont.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifString.C -o ./obj/CifString.o >/dev/null 2>&1 libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/mapped_vector.C -o ./obj/mapped_vector.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/mapped_ptr_vector.C -o ./obj/mapped_ptr_vector.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/mapped_vector.C -fPIC -DPIC -o ./obj/.libs/mapped_vector.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/mapped_ptr_vector.C -fPIC -DPIC -o ./obj/.libs/mapped_ptr_vector.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/mapped_vector.C -o ./obj/mapped_vector.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DataInfo.C -o ./obj/DataInfo.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/mapped_ptr_vector.C -o ./obj/mapped_ptr_vector.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/GenString.C -o ./obj/GenString.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/Serializer.C -o ./obj/Serializer.o >/dev/null 2>&1 a - RcsbPlatform.o a - RcsbFile.o a - BlockIO.o a - Serializer.o a - GenString.o a - CifString.o a - GenCont.o a - Exceptions.o a - DataInfo.o a - mapped_vector.o a - mapped_ptr_vector.o cp -f -t ../lib ./obj/RcsbPlatform.o ./obj/RcsbFile.o ./obj/BlockIO.o ./obj/Serializer.o ./obj/GenString.o ./obj/CifString.o ./obj/GenCont.o ./obj/Exceptions.o ./obj/DataInfo.o ./obj/mapped_vector.o ./obj/mapped_ptr_vector.o ./obj/RcsbPlatform.lo ./obj/RcsbFile.lo ./obj/BlockIO.lo ./obj/Serializer.lo ./obj/GenString.lo ./obj/CifString.lo ./obj/GenCont.lo ./obj/Exceptions.lo ./obj/DataInfo.lo ./obj/mapped_vector.lo ./obj/mapped_ptr_vector.lo mkdir -p ../lib/.libs && cp -f -t ../lib/.libs ./obj/.libs/RcsbPlatform.o ./obj/.libs/RcsbFile.o ./obj/.libs/BlockIO.o ./obj/.libs/Serializer.o ./obj/.libs/GenString.o ./obj/.libs/CifString.o ./obj/.libs/GenCont.o ./obj/.libs/Exceptions.o ./obj/.libs/DataInfo.o ./obj/.libs/mapped_vector.o ./obj/.libs/mapped_ptr_vector.o true lib/common.a lib/common.a is up to date. ../etc/cifinstall -m 0444 ./lib/common.a ../lib x - RcsbPlatform.o x - RcsbFile.o x - BlockIO.o x - Serializer.o x - GenString.o x - CifString.o x - GenCont.o x - Exceptions.o x - DataInfo.o x - mapped_vector.o x - mapped_ptr_vector.o x - RcsbPlatform.o x - RcsbFile.o x - BlockIO.o x - Serializer.o x - GenString.o x - CifString.o x - GenCont.o x - Exceptions.o x - DataInfo.o x - mapped_vector.o x - mapped_ptr_vector.o a - BlockIO.o a - CifString.o a - DataInfo.o a - Exceptions.o a - GenCont.o a - GenString.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - mapped_ptr_vector.o a - mapped_vector.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/common' ------------------------------------------------------------ **** Making tables **** ------------------------------------------------------------ make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/tables' libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/TTable.C -o ./obj/TTable.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/ITTable.C -o ./obj/ITTable.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/ISTable.C -o ./obj/ISTable.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/TableFile.C -o ./obj/TableFile.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/ISTable.C -fPIC -DPIC -o ./obj/.libs/ISTable.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/TableFile.C -fPIC -DPIC -o ./obj/.libs/TableFile.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/ITTable.C -fPIC -DPIC -o ./obj/.libs/ITTable.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/TTable.C -fPIC -DPIC -o ./obj/.libs/TTable.o src/TableFile.C: In member function 'std::__cxx11::string TableFile::GetFirstBlockName()': src/TableFile.C:474:12: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=] catch (out_of_range) ^~~~~~~~~~~~ src/ISTable.C: In member function 'bool ISTable::IsColumnPresent(const string&)': src/ISTable.C:228:12: warning: catching polymorphic type 'class NotFoundException' by value [-Wcatch-value=] catch (NotFoundException) ^~~~~~~~~~~~~~~~~ src/ITTable.C: In member function 'void ITTable::AppendToColumn(unsigned int, const string&)': src/ITTable.C:169:16: warning: catching polymorphic type 'class AlreadyExistsException' by value [-Wcatch-value=] catch (AlreadyExistsException) ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function 'void ITTable::ClearColumn(unsigned int)': src/ITTable.C:244:12: warning: catching polymorphic type 'class AlreadyExistsException' by value [-Wcatch-value=] catch (AlreadyExistsException) ^~~~~~~~~~~~~~~~~~~~~~ src/ISTable.C: In member function 'unsigned int ISTable::InsertRow(unsigned int, const std::vector >&)': src/ISTable.C:649:20: warning: catching polymorphic type 'class AlreadyExistsException' by value [-Wcatch-value=] catch (AlreadyExistsException) ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function 'unsigned int ITTable::InsertRow(unsigned int, const std::vector >&)': src/ITTable.C:326:16: warning: catching polymorphic type 'class AlreadyExistsException' by value [-Wcatch-value=] catch (AlreadyExistsException) ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function 'void ITTable::FillRow(unsigned int, const std::vector >&)': src/ITTable.C:362:12: warning: catching polymorphic type 'class AlreadyExistsException' by value [-Wcatch-value=] catch (AlreadyExistsException) ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function 'void ITTable::ClearRow(unsigned int)': src/ITTable.C:439:12: warning: catching polymorphic type 'class AlreadyExistsException' by value [-Wcatch-value=] catch (AlreadyExistsException) ^~~~~~~~~~~~~~~~~~~~~~ src/ISTable.C: In function 'std::ostream& operator<<(std::ostream&, const ISTable&)': src/ISTable.C:1826:20: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=] catch (out_of_range) ^~~~~~~~~~~~ src/ITTable.C: In member function 'void ITTable::FillColumn(unsigned int, std::vector >::const_iterator, std::vector >::const_iterator)': src/ITTable.C:1645:12: warning: catching polymorphic type 'class AlreadyExistsException' by value [-Wcatch-value=] catch (AlreadyExistsException) ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function 'void ITTable::AppendToColumn(unsigned int, const std::vector >&)': src/ITTable.C:1714:16: warning: catching polymorphic type 'class AlreadyExistsException' by value [-Wcatch-value=] catch (AlreadyExistsException) ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function 'int ITTable::UpdateCell(const string&, unsigned int, unsigned int)': src/ITTable.C:1759:12: warning: catching polymorphic type 'class AlreadyExistsException' by value [-Wcatch-value=] catch (AlreadyExistsException) ^~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/TTable.C -o ./obj/TTable.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/TableFile.C -o ./obj/TableFile.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/ITTable.C -o ./obj/ITTable.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/ISTable.C -o ./obj/ISTable.o >/dev/null 2>&1 a - TTable.o a - ITTable.o a - ISTable.o a - TableFile.o cp -f -t ../lib ./obj/TTable.o ./obj/ITTable.o ./obj/ISTable.o ./obj/TableFile.o ./obj/TTable.lo ./obj/ITTable.lo ./obj/ISTable.lo ./obj/TableFile.lo mkdir -p ../lib/.libs && cp -f -t ../lib/.libs ./obj/.libs/TTable.o ./obj/.libs/ITTable.o ./obj/.libs/ISTable.o ./obj/.libs/TableFile.o true lib/tables.a lib/tables.a is up to date. ../etc/cifinstall -m 0444 ./lib/tables.a ../lib x - BlockIO.o x - CifString.o x - DataInfo.o x - Exceptions.o x - GenCont.o x - GenString.o x - RcsbFile.o x - RcsbPlatform.o x - Serializer.o x - mapped_ptr_vector.o x - mapped_vector.o x - TTable.o x - ITTable.o x - ISTable.o x - TableFile.o a - BlockIO.o a - CifString.o a - DataInfo.o a - Exceptions.o a - GenCont.o a - GenString.o a - ISTable.o a - ITTable.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - TTable.o a - TableFile.o a - mapped_ptr_vector.o a - mapped_vector.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/tables' ------------------------------------------------------------ **** Making regex **** ------------------------------------------------------------ make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/regex' libtool --mode=compile gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regcomp.c -o ./obj/regcomp.o libtool --mode=compile gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regexec.c -o ./obj/regexec.o libtool --mode=compile gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regerror.c -o ./obj/regerror.o libtool --mode=compile gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regfree.c -o ./obj/regfree.o libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regfree.c -fPIC -DPIC -o ./obj/.libs/regfree.o libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regerror.c -fPIC -DPIC -o ./obj/.libs/regerror.o libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regexec.c -fPIC -DPIC -o ./obj/.libs/regexec.o libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regcomp.c -fPIC -DPIC -o ./obj/.libs/regcomp.o libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regfree.c -o ./obj/regfree.o >/dev/null 2>&1 libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regerror.c -o ./obj/regerror.o >/dev/null 2>&1 libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regcomp.c -o ./obj/regcomp.o >/dev/null 2>&1 libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regexec.c -o ./obj/regexec.o >/dev/null 2>&1 a - regcomp.o a - regexec.o a - regerror.o a - regfree.o cp -f -t ../lib ./obj/regcomp.o ./obj/regexec.o ./obj/regerror.o ./obj/regfree.o ./obj/regcomp.lo ./obj/regexec.lo ./obj/regerror.lo ./obj/regfree.lo mkdir -p ../lib/.libs && cp -f -t ../lib/.libs ./obj/.libs/regcomp.o ./obj/.libs/regexec.o ./obj/.libs/regerror.o ./obj/.libs/regfree.o true lib/regex.a lib/regex.a is up to date. ../etc/cifinstall -m 0444 ./lib/regex.a ../lib x - BlockIO.o x - CifString.o x - DataInfo.o x - Exceptions.o x - GenCont.o x - GenString.o x - ISTable.o x - ITTable.o x - RcsbFile.o x - RcsbPlatform.o x - Serializer.o x - TTable.o x - TableFile.o x - mapped_ptr_vector.o x - mapped_vector.o x - regcomp.o x - regexec.o x - regerror.o x - regfree.o a - BlockIO.o a - CifString.o a - DataInfo.o a - Exceptions.o a - GenCont.o a - GenString.o a - ISTable.o a - ITTable.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - TTable.o a - TableFile.o a - mapped_ptr_vector.o a - mapped_vector.o a - regcomp.o a - regerror.o a - regexec.o a - regfree.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/regex' ------------------------------------------------------------ **** Making cif-file **** ------------------------------------------------------------ make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/cif-file' libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifFile.C -o ./obj/CifFile.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DicFile.C -o ./obj/DicFile.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/ParentChild.C -o ./obj/ParentChild.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifParentChild.C -o ./obj/CifParentChild.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifDataInfo.C -o ./obj/CifDataInfo.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifExcept.C -o ./obj/CifExcept.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifExcept.C -fPIC -DPIC -o ./obj/.libs/CifExcept.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DicFile.C -fPIC -DPIC -o ./obj/.libs/DicFile.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/ParentChild.C -fPIC -DPIC -o ./obj/.libs/ParentChild.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifParentChild.C -fPIC -DPIC -o ./obj/.libs/CifParentChild.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifFile.C -fPIC -DPIC -o ./obj/.libs/CifFile.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifDataInfo.C -fPIC -DPIC -o ./obj/.libs/CifDataInfo.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifExcept.C -o ./obj/CifExcept.o >/dev/null 2>&1 src/CifFile.C: In member function 'int CifFile::CheckCellRange(const string&, const string&, const std::vector >&, const std::vector >&)': src/CifFile.C:2503:12: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] catch (exception) ^~~~~~~~~ libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifDataInfo.C -o ./obj/CifDataInfo.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DicFile.C -o ./obj/DicFile.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifParentChild.C -o ./obj/CifParentChild.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifFile.C -o ./obj/CifFile.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/ParentChild.C -o ./obj/ParentChild.o >/dev/null 2>&1 a - CifFile.o a - DicFile.o a - ParentChild.o a - CifParentChild.o a - CifDataInfo.o a - CifExcept.o cp -f -t ../lib ./obj/CifFile.o ./obj/DicFile.o ./obj/ParentChild.o ./obj/CifParentChild.o ./obj/CifDataInfo.o ./obj/CifExcept.o ./obj/CifFile.lo ./obj/DicFile.lo ./obj/ParentChild.lo ./obj/CifParentChild.lo ./obj/CifDataInfo.lo ./obj/CifExcept.lo mkdir -p ../lib/.libs && cp -f -t ../lib/.libs ./obj/.libs/CifFile.o ./obj/.libs/DicFile.o ./obj/.libs/ParentChild.o ./obj/.libs/CifParentChild.o ./obj/.libs/CifDataInfo.o ./obj/.libs/CifExcept.o true lib/cif-file.a lib/cif-file.a is up to date. ../etc/cifinstall -m 0444 ./lib/cif-file.a ../lib x - BlockIO.o x - CifString.o x - DataInfo.o x - Exceptions.o x - GenCont.o x - GenString.o x - ISTable.o x - ITTable.o x - RcsbFile.o x - RcsbPlatform.o x - Serializer.o x - TTable.o x - TableFile.o x - mapped_ptr_vector.o x - mapped_vector.o x - regcomp.o x - regerror.o x - regexec.o x - regfree.o x - CifFile.o x - DicFile.o x - ParentChild.o x - CifParentChild.o x - CifDataInfo.o x - CifExcept.o a - BlockIO.o a - CifDataInfo.o a - CifExcept.o a - CifFile.o a - CifParentChild.o a - CifString.o a - DataInfo.o a - DicFile.o a - Exceptions.o a - GenCont.o a - GenString.o a - ISTable.o a - ITTable.o a - ParentChild.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - TTable.o a - TableFile.o a - mapped_ptr_vector.o a - mapped_vector.o a - regcomp.o a - regerror.o a - regexec.o a - regfree.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/cif-file' ------------------------------------------------------------ **** Making cif-parser **** ------------------------------------------------------------ make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/cif-parser' libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifFileReadDef.C -o ./obj/CifFileReadDef.o sh -c 'cd ./src; bison -d -v -l -p cifparser_ ../src/CifParser.y' libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifParserBase.C -o ./obj/CifParserBase.o sh -c 'cd ./src; bison -d -v -l -p dicparser_ ../src/DICParser.y' libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DICParserBase.C -o ./obj/DICParserBase.o mv src/CifParser.tab.c src/CifParser.c mv src/CifParser.tab.h src/CifParser.h libtool --mode=compile gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifParser.c -o obj/CifParser.o mv src/DICParser.tab.c src/DICParser.c mv src/DICParser.tab.h src/DICParser.h libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifFileReadDef.C -fPIC -DPIC -o ./obj/.libs/CifFileReadDef.o libtool --mode=compile gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DICParser.c -o obj/DICParser.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifParserBase.C -fPIC -DPIC -o ./obj/.libs/CifParserBase.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DICParserBase.C -fPIC -DPIC -o ./obj/.libs/DICParserBase.o libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifParser.c -fPIC -DPIC -o obj/.libs/CifParser.o libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DICParser.c -fPIC -DPIC -o obj/.libs/DICParser.o libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifParser.c -o obj/CifParser.o >/dev/null 2>&1 libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DICParser.c -o obj/DICParser.o >/dev/null 2>&1 flex -Cfr -L -Pdicparser_ -t ./src/DICScanner.l > ./src/DICScanner.c libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DICScannerBase.C -o ./obj/DICScannerBase.o flex -Cfr -L -Pcifparser_ -t ./src/CifScanner.l > ./src/CifScanner.c libtool --mode=compile gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c ./src/DICScanner.c -o ./obj/DICScanner.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifScannerBase.C -o ./obj/CifScannerBase.o libtool --mode=compile gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c ./src/CifScanner.c -o ./obj/CifScanner.o libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c ./src/DICScanner.c -fPIC -DPIC -o ./obj/.libs/DICScanner.o libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c ./src/CifScanner.c -fPIC -DPIC -o ./obj/.libs/CifScanner.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DICScannerBase.C -fPIC -DPIC -o ./obj/.libs/DICScannerBase.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifScannerBase.C -fPIC -DPIC -o ./obj/.libs/CifScannerBase.o libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c ./src/DICScanner.c -o ./obj/DICScanner.o >/dev/null 2>&1 libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c ./src/CifScanner.c -o ./obj/CifScanner.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifFileReadDef.C -o ./obj/CifFileReadDef.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DICScannerBase.C -o ./obj/DICScannerBase.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifScannerBase.C -o ./obj/CifScannerBase.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifParserBase.C -o ./obj/CifParserBase.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DICParserBase.C -o ./obj/DICParserBase.o >/dev/null 2>&1 a - CifFileReadDef.o a - CifScanner.o a - CifScannerBase.o a - CifParser.o a - CifParserBase.o a - DICScanner.o a - DICScannerBase.o a - DICParser.o a - DICParserBase.o cp -f -t ../lib ./obj/CifFileReadDef.o ./obj/CifScanner.o ./obj/CifScannerBase.o ./obj/CifParser.o ./obj/CifParserBase.o ./obj/DICScanner.o ./obj/DICScannerBase.o ./obj/DICParser.o ./obj/DICParserBase.o ./obj/CifFileReadDef.lo ./obj/CifScanner.lo ./obj/CifScannerBase.lo ./obj/CifParser.lo ./obj/CifParserBase.lo ./obj/DICScanner.lo ./obj/DICScannerBase.lo ./obj/DICParser.lo ./obj/DICParserBase.lo mkdir -p ../lib/.libs && cp -f -t ../lib/.libs ./obj/.libs/CifFileReadDef.o ./obj/.libs/CifScanner.o ./obj/.libs/CifScannerBase.o ./obj/.libs/CifParser.o ./obj/.libs/CifParserBase.o ./obj/.libs/DICScanner.o ./obj/.libs/DICScannerBase.o ./obj/.libs/DICParser.o ./obj/.libs/DICParserBase.o true lib/cifparse-obj.a lib/cifparse-obj.a is up to date. ../etc/cifinstall -m 0444 ./lib/cifparse-obj.a ../lib x - BlockIO.o x - CifDataInfo.o x - CifExcept.o x - CifFile.o x - CifParentChild.o x - CifString.o x - DataInfo.o x - DicFile.o x - Exceptions.o x - GenCont.o x - GenString.o x - ISTable.o x - ITTable.o x - ParentChild.o x - RcsbFile.o x - RcsbPlatform.o x - Serializer.o x - TTable.o x - TableFile.o x - mapped_ptr_vector.o x - mapped_vector.o x - regcomp.o x - regerror.o x - regexec.o x - regfree.o x - CifFileReadDef.o x - CifScanner.o x - CifScannerBase.o x - CifParser.o x - CifParserBase.o x - DICScanner.o x - DICScannerBase.o x - DICParser.o x - DICParserBase.o a - BlockIO.o a - CifDataInfo.o a - CifExcept.o a - CifFile.o a - CifFileReadDef.o a - CifParentChild.o a - CifParser.o a - CifParserBase.o a - CifScanner.o a - CifScannerBase.o a - CifString.o a - DICParser.o a - DICParserBase.o a - DICScanner.o a - DICScannerBase.o a - DataInfo.o a - DicFile.o a - Exceptions.o a - GenCont.o a - GenString.o a - ISTable.o a - ITTable.o a - ParentChild.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - TTable.o a - TableFile.o a - mapped_ptr_vector.o a - mapped_vector.o a - regcomp.o a - regerror.o a - regexec.o a - regfree.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib rm src/DICParser.h src/CifParser.h make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/cif-parser' ------------------------------------------------------------ **** Making cif-file-util **** ------------------------------------------------------------ make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/cif-file-util' libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifFileUtil.C -o ./obj/CifFileUtil.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifCorrector.C -o ./obj/CifCorrector.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifCorrector.C -fPIC -DPIC -o ./obj/.libs/CifCorrector.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifFileUtil.C -fPIC -DPIC -o ./obj/.libs/CifFileUtil.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifFileUtil.C -o ./obj/CifFileUtil.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifCorrector.C -o ./obj/CifCorrector.o >/dev/null 2>&1 a - CifFileUtil.o a - CifCorrector.o cp -f -t ../lib ./obj/CifFileUtil.o ./obj/CifCorrector.o ./obj/CifFileUtil.lo ./obj/CifCorrector.lo mkdir -p ../lib/.libs && cp -f -t ../lib/.libs ./obj/.libs/CifFileUtil.o ./obj/.libs/CifCorrector.o true lib/cif-file-util.a lib/cif-file-util.a is up to date. ../etc/cifinstall -m 0444 ./lib/cif-file-util.a ../lib x - BlockIO.o x - CifDataInfo.o x - CifExcept.o x - CifFile.o x - CifFileReadDef.o x - CifParentChild.o x - CifParser.o x - CifParserBase.o x - CifScanner.o x - CifScannerBase.o x - CifString.o x - DICParser.o x - DICParserBase.o x - DICScanner.o x - DICScannerBase.o x - DataInfo.o x - DicFile.o x - Exceptions.o x - GenCont.o x - GenString.o x - ISTable.o x - ITTable.o x - ParentChild.o x - RcsbFile.o x - RcsbPlatform.o x - Serializer.o x - TTable.o x - TableFile.o x - mapped_ptr_vector.o x - mapped_vector.o x - regcomp.o x - regerror.o x - regexec.o x - regfree.o x - CifFileUtil.o x - CifCorrector.o a - BlockIO.o a - CifCorrector.o a - CifDataInfo.o a - CifExcept.o a - CifFile.o a - CifFileReadDef.o a - CifFileUtil.o a - CifParentChild.o a - CifParser.o a - CifParserBase.o a - CifScanner.o a - CifScannerBase.o a - CifString.o a - DICParser.o a - DICParserBase.o a - DICScanner.o a - DICScannerBase.o a - DataInfo.o a - DicFile.o a - Exceptions.o a - GenCont.o a - GenString.o a - ISTable.o a - ITTable.o a - ParentChild.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - TTable.o a - TableFile.o a - mapped_ptr_vector.o a - mapped_vector.o a - regcomp.o a - regerror.o a - regexec.o a - regfree.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/cif-file-util' ------------------------------------------------------------ **** Making dict-obj-file **** ------------------------------------------------------------ make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/dict-obj-file' libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjContInfo.C -o ./obj/DictObjContInfo.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjCont.C -o ./obj/DictObjCont.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjFile.C -o ./obj/DictObjFile.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictDataInfo.C -o ./obj/DictDataInfo.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictParentChild.C -o ./obj/DictParentChild.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjFileCreator.C -o obj/DictObjFileCreator.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjFileReader.C -o obj/DictObjFileReader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjFileSelectiveReader.C -o obj/DictObjFileSelectiveReader.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictParentChild.C -fPIC -DPIC -o ./obj/.libs/DictParentChild.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictDataInfo.C -fPIC -DPIC -o ./obj/.libs/DictDataInfo.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjContInfo.C -fPIC -DPIC -o ./obj/.libs/DictObjContInfo.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjFile.C -fPIC -DPIC -o ./obj/.libs/DictObjFile.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjCont.C -fPIC -DPIC -o ./obj/.libs/DictObjCont.o src/DictObjCont.C: In member function 'void DictObjCont::PrintContainers(const string&, const string&, const ObjContInfo&)': src/DictObjCont.C:640:16: warning: catching polymorphic type 'class NotFoundException' by value [-Wcatch-value=] catch (NotFoundException) ^~~~~~~~~~~~~~~~~ libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictDataInfo.C -o ./obj/DictDataInfo.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictParentChild.C -o ./obj/DictParentChild.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjFile.C -o ./obj/DictObjFile.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjContInfo.C -o ./obj/DictObjContInfo.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjCont.C -o ./obj/DictObjCont.o >/dev/null 2>&1 a - DictObjContInfo.o a - DictObjCont.o a - DictObjFile.o a - DictDataInfo.o a - DictParentChild.o cp -f -t ../lib ./obj/DictObjContInfo.o ./obj/DictObjCont.o ./obj/DictObjFile.o ./obj/DictDataInfo.o ./obj/DictParentChild.o ./obj/DictObjContInfo.lo ./obj/DictObjCont.lo ./obj/DictObjFile.lo ./obj/DictDataInfo.lo ./obj/DictParentChild.lo mkdir -p ../lib/.libs && cp -f -t ../lib/.libs ./obj/.libs/DictObjContInfo.o ./obj/.libs/DictObjCont.o ./obj/.libs/DictObjFile.o ./obj/.libs/DictDataInfo.o ./obj/.libs/DictParentChild.o true lib/dict-obj-file.a lib/dict-obj-file.a is up to date. ../etc/cifinstall -m 0444 ./lib/dict-obj-file.a ../lib x - BlockIO.o x - CifCorrector.o x - CifDataInfo.o x - CifExcept.o x - CifFile.o x - CifFileReadDef.o x - CifFileUtil.o x - CifParentChild.o x - CifParser.o x - CifParserBase.o x - CifScanner.o x - CifScannerBase.o x - CifString.o x - DICParser.o x - DICParserBase.o x - DICScanner.o x - DICScannerBase.o x - DataInfo.o x - DicFile.o x - Exceptions.o x - GenCont.o x - GenString.o x - ISTable.o x - ITTable.o x - ParentChild.o x - RcsbFile.o x - RcsbPlatform.o x - Serializer.o x - TTable.o x - TableFile.o x - mapped_ptr_vector.o x - mapped_vector.o x - regcomp.o x - regerror.o x - regexec.o x - regfree.o x - DictObjContInfo.o x - DictObjCont.o x - DictObjFile.o x - DictDataInfo.o x - DictParentChild.o a - BlockIO.o a - CifCorrector.o a - CifDataInfo.o a - CifExcept.o a - CifFile.o a - CifFileReadDef.o a - CifFileUtil.o a - CifParentChild.o a - CifParser.o a - CifParserBase.o a - CifScanner.o a - CifScannerBase.o a - CifString.o a - DICParser.o a - DICParserBase.o a - DICScanner.o a - DICScannerBase.o a - DataInfo.o a - DicFile.o a - DictDataInfo.o a - DictObjCont.o a - DictObjContInfo.o a - DictObjFile.o a - DictParentChild.o a - Exceptions.o a - GenCont.o a - GenString.o a - ISTable.o a - ITTable.o a - ParentChild.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - TTable.o a - TableFile.o a - mapped_ptr_vector.o a - mapped_vector.o a - regcomp.o a - regerror.o a - regexec.o a - regfree.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -w -static obj/DictObjFileCreator.o ../lib/dict-obj-file.a ../lib/cif-file-util.a ../lib/cif-file.a ../lib/cifparse-obj.a ../lib/tables.a ../lib/common.a ../lib/regex.a -lm -o ./bin/DictObjFileCreator g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -w -static obj/DictObjFileReader.o ../lib/dict-obj-file.a ../lib/cif-file-util.a ../lib/cif-file.a ../lib/cifparse-obj.a ../lib/tables.a ../lib/common.a ../lib/regex.a -lm -o ./bin/DictObjFileReader g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -w -static obj/DictObjFileSelectiveReader.o ../lib/dict-obj-file.a ../lib/cif-file-util.a ../lib/cif-file.a ../lib/cifparse-obj.a ../lib/tables.a ../lib/common.a ../lib/regex.a -lm -o ./bin/DictObjFileSelectiveReader make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/dict-obj-file' ------------------------------------------------------------ **** Making pdbml-parser **** ------------------------------------------------------------ make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/pdbml-parser' libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include -c src/PdbMlFileUtil.C -o ./obj/PdbMlFileUtil.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include -c src/PdbMlParserHandler.C -o ./obj/PdbMlParserHandler.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include -c src/misc_util.C -o ./obj/misc_util.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include -c src/xml2mmcif.C -o obj/xml2mmcif.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include -c src/PdbMlFileUtil.C -fPIC -DPIC -o ./obj/.libs/PdbMlFileUtil.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include -c src/PdbMlParserHandler.C -fPIC -DPIC -o ./obj/.libs/PdbMlParserHandler.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include -c src/misc_util.C -fPIC -DPIC -o ./obj/.libs/misc_util.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include -c src/PdbMlFileUtil.C -o ./obj/PdbMlFileUtil.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include -c src/misc_util.C -o ./obj/misc_util.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include -c src/PdbMlParserHandler.C -o ./obj/PdbMlParserHandler.o >/dev/null 2>&1 a - PdbMlFileUtil.o a - PdbMlParserHandler.o a - misc_util.o cp -f -t ../lib ./obj/PdbMlFileUtil.o ./obj/PdbMlParserHandler.o ./obj/misc_util.o ./obj/PdbMlFileUtil.lo ./obj/PdbMlParserHandler.lo ./obj/misc_util.lo mkdir -p ../lib/.libs && cp -f -t ../lib/.libs ./obj/.libs/PdbMlFileUtil.o ./obj/.libs/PdbMlParserHandler.o ./obj/.libs/misc_util.o true lib/pdbml-parser.a lib/pdbml-parser.a is up to date. ../etc/cifinstall -m 0444 ./lib/pdbml-parser.a ../lib x - BlockIO.o x - CifCorrector.o x - CifDataInfo.o x - CifExcept.o x - CifFile.o x - CifFileReadDef.o x - CifFileUtil.o x - CifParentChild.o x - CifParser.o x - CifParserBase.o x - CifScanner.o x - CifScannerBase.o x - CifString.o x - DICParser.o x - DICParserBase.o x - DICScanner.o x - DICScannerBase.o x - DataInfo.o x - DicFile.o x - DictDataInfo.o x - DictObjCont.o x - DictObjContInfo.o x - DictObjFile.o x - DictParentChild.o x - Exceptions.o x - GenCont.o x - GenString.o x - ISTable.o x - ITTable.o x - ParentChild.o x - RcsbFile.o x - RcsbPlatform.o x - Serializer.o x - TTable.o x - TableFile.o x - mapped_ptr_vector.o x - mapped_vector.o x - regcomp.o x - regerror.o x - regexec.o x - regfree.o x - PdbMlFileUtil.o x - PdbMlParserHandler.o x - misc_util.o a - BlockIO.o a - CifCorrector.o a - CifDataInfo.o a - CifExcept.o a - CifFile.o a - CifFileReadDef.o a - CifFileUtil.o a - CifParentChild.o a - CifParser.o a - CifParserBase.o a - CifScanner.o a - CifScannerBase.o a - CifString.o a - DICParser.o a - DICParserBase.o a - DICScanner.o a - DICScannerBase.o a - DataInfo.o a - DicFile.o a - DictDataInfo.o a - DictObjCont.o a - DictObjContInfo.o a - DictObjFile.o a - DictParentChild.o a - Exceptions.o a - GenCont.o a - GenString.o a - ISTable.o a - ITTable.o a - ParentChild.o a - PdbMlFileUtil.o a - PdbMlParserHandler.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - TTable.o a - TableFile.o a - mapped_ptr_vector.o a - mapped_vector.o a - misc_util.o a - regcomp.o a - regerror.o a - regexec.o a - regfree.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib g++ -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -w -L/usr/lib obj/xml2mmcif.o ../lib/pdbml-parser.a ../lib/dict-obj-file.a ../lib/cif-file-util.a ../lib/cif-file.a ../lib/cifparse-obj.a ../lib/tables.a ../lib/common.a ../lib/regex.a -lxerces-c -lm -o ./bin/xml2mmcif make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/pdbml-parser' ------------------------------------------------------------ **** Making cctbx **** ------------------------------------------------------------ make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/cctbx' make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/cctbx' libtool: link: g++ -fPIC -DPIC -shared lib/.libs/BlockIO.o lib/.libs/CifCorrector.o lib/.libs/CifDataInfo.o lib/.libs/CifExcept.o lib/.libs/CifFile.o lib/.libs/CifFileReadDef.o lib/.libs/CifFileUtil.o lib/.libs/CifParentChild.o lib/.libs/CifParser.o lib/.libs/CifParserBase.o lib/.libs/CifScanner.o lib/.libs/CifScannerBase.o lib/.libs/CifString.o lib/.libs/DICParser.o lib/.libs/DICParserBase.o lib/.libs/DICScanner.o lib/.libs/DICScannerBase.o lib/.libs/DataInfo.o lib/.libs/DicFile.o lib/.libs/DictDataInfo.o lib/.libs/DictObjCont.o lib/.libs/DictObjContInfo.o lib/.libs/DictObjFile.o lib/.libs/DictParentChild.o lib/.libs/Exceptions.o lib/.libs/GenCont.o lib/.libs/GenString.o lib/.libs/ISTable.o lib/.libs/ITTable.o lib/.libs/ParentChild.o lib/.libs/PdbMlFileUtil.o lib/.libs/PdbMlParserHandler.o lib/.libs/RcsbFile.o lib/.libs/RcsbPlatform.o lib/.libs/Serializer.o lib/.libs/TTable.o lib/.libs/TableFile.o lib/.libs/mapped_ptr_vector.o lib/.libs/mapped_vector.o lib/.libs/misc_util.o lib/.libs/regcomp.o lib/.libs/regerror.o lib/.libs/regexec.o lib/.libs/regfree.o -lxerces-c -lstdc++ -lm -lc -lgcc_s -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -Wl,-soname -Wl,librcsb-core-wrapper.so.0 -o lib/.libs/librcsb-core-wrapper.so.0.0.1 libtool: link: (cd "lib/.libs" && rm -f "librcsb-core-wrapper.so.0" && ln -s "librcsb-core-wrapper.so.0.0.1" "librcsb-core-wrapper.so.0") libtool: link: (cd "lib/.libs" && rm -f "librcsb-core-wrapper.so" && ln -s "librcsb-core-wrapper.so.0.0.1" "librcsb-core-wrapper.so") libtool: link: ar cru lib/.libs/librcsb-core-wrapper.a lib/BlockIO.o lib/CifCorrector.o lib/CifDataInfo.o lib/CifExcept.o lib/CifFile.o lib/CifFileReadDef.o lib/CifFileUtil.o lib/CifParentChild.o lib/CifParser.o lib/CifParserBase.o lib/CifScanner.o lib/CifScannerBase.o lib/CifString.o lib/DICParser.o lib/DICParserBase.o lib/DICScanner.o lib/DICScannerBase.o lib/DataInfo.o lib/DicFile.o lib/DictDataInfo.o lib/DictObjCont.o lib/DictObjContInfo.o lib/DictObjFile.o lib/DictParentChild.o lib/Exceptions.o lib/GenCont.o lib/GenString.o lib/ISTable.o lib/ITTable.o lib/ParentChild.o lib/PdbMlFileUtil.o lib/PdbMlParserHandler.o lib/RcsbFile.o lib/RcsbPlatform.o lib/Serializer.o lib/TTable.o lib/TableFile.o lib/mapped_ptr_vector.o lib/mapped_vector.o lib/misc_util.o lib/regcomp.o lib/regerror.o lib/regexec.o lib/regfree.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib lib/.libs/librcsb-core-wrapper.a libtool: link: ( cd "lib/.libs" && rm -f "librcsb-core-wrapper.la" && ln -s "../librcsb-core-wrapper.la" "librcsb-core-wrapper.la" ) cd wrapper && make OPT=-O make[3]: Entering directory '/build/librcsb-core-wrapper-1.005/wrapper' sed -e 's!@C++FLAGS@!-g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -O -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I -I !g; s!@DEFINES@! -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW !g; s!@EXT_COMP_OPT@!-ftemplate-depth-128 -fno-inline -Wall!; s!@EXT_LIBS_DIRS@!-L -L -L!g; s!@EXT_LIBS@!-l -l -l!g;' < "python/setup.py.in" > "python/setup.py" ln -sf ../src python/src make[3]: Leaving directory '/build/librcsb-core-wrapper-1.005/wrapper' make[2]: Leaving directory '/build/librcsb-core-wrapper-1.005' # When using debhelper 11 something is very different in the installation. # The next line tries to hack around this - but this is not the solution - thus reverting debhelper compat level # cp -a common/include/* pdbml-parser/include/* cif-file/include/* tables/include/* include /usr/bin/make doc make[2]: Entering directory '/build/librcsb-core-wrapper-1.005' rm -rf rcsb && cp -r include rcsb grep -lr '^#include "' rcsb | xargs sed -i -e '/^#include "/{ s/#include "\([^"]\+\)"/#include /; }' mkdir -p docs/doxyfiles echo PROJECT_NAME = librcsb-core-wrapper > docs/doxyfiles/Doxyfile echo PROJECT_NUMBER = 1.005 >> docs/doxyfiles/Doxyfile echo OUTPUT_DIRECTORY = docs >> docs/doxyfiles/Doxyfile echo INPUT = rcsb >> docs/doxyfiles/Doxyfile cat etc/Doxyfile-template >> docs/doxyfiles/Doxyfile doxygen docs/doxyfiles/Doxyfile warning: Tag `USE_WINDOWS_ENCODING' at line 75 of file `docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `DETAILS_AT_TOP' at line 177 of file `docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `SHOW_DIRECTORIES' at line 411 of file `docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `HTML_ALIGN_MEMBERS' at line 732 of file `docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_SCHEMA' at line 964 of file `docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_DTD' at line 970 of file `docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `MAX_DOT_GRAPH_WIDTH' at line 1246 of file `docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `MAX_DOT_GRAPH_HEIGHT' at line 1254 of file `docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" make[2]: Leaving directory '/build/librcsb-core-wrapper-1.005' dh_auto_build --sourcedirectory=wrapper/python dh_auto_build: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_build: This feature will be removed in compat 12. pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions pyversions: missing debian/pyversions file, fall back to supported versions cd wrapper/python && python setup.py build --force running build running build_ext building 'CorePyWrap' extension creating build creating build/temp.linux-aarch64-2.7 creating build/temp.linux-aarch64-2.7/src aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../include -I/usr/include/python2.7 -c src/DataInfoPyWrap.C -o build/temp.linux-aarch64-2.7/src/DataInfoPyWrap.o -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../include -I/usr/include/python2.7 -c src/RcsbFilePyWrap.C -o build/temp.linux-aarch64-2.7/src/RcsbFilePyWrap.o -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../include -I/usr/include/python2.7 -c src/DictDataInfoPyWrap.C -o build/temp.linux-aarch64-2.7/src/DictDataInfoPyWrap.o -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../include -I/usr/include/python2.7 -c src/CorePyWrap.C -o build/temp.linux-aarch64-2.7/src/CorePyWrap.o -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../include -I/usr/include/python2.7 -c src/TableFilePyWrap.C -o build/temp.linux-aarch64-2.7/src/TableFilePyWrap.o -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../include -I/usr/include/python2.7 -c src/CifDataInfoPyWrap.C -o build/temp.linux-aarch64-2.7/src/CifDataInfoPyWrap.o -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../include -I/usr/include/python2.7 -c src/ISTablePyWrap.C -o build/temp.linux-aarch64-2.7/src/ISTablePyWrap.o -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW src/ISTablePyWrap.C: In function 'void InitISTablePyWrapper()': src/ISTablePyWrap.C:205:268: warning: typedef 'Search_function_type' locally defined but not used [-Wunused-local-typedefs] typedef void ( ::ISTable::*Search_function_type )( ::std::vector< unsigned int > &,::std::vector< std::string > const &,::std::vector< std::string > const &,unsigned int const,::ITTable::eSearchDir const,::ITTable::eSearchType const,::std::string const & ) ; ^ src/ISTablePyWrap.C:245:120: warning: typedef 'GetColumn_function_type' locally defined but not used [-Wunused-local-typedefs] typedef void ( ::ISTable::*GetColumn_function_type )( ::std::vector< std::string > &,::std::string const & ) ; ^ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../include -I/usr/include/python2.7 -c src/StlPyWrap.C -o build/temp.linux-aarch64-2.7/src/StlPyWrap.o -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../include -I/usr/include/python2.7 -c src/CifFilePyWrap.C -o build/temp.linux-aarch64-2.7/src/CifFilePyWrap.o -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW src/CifFilePyWrap.C: In function 'void InitCifFilePyWrapper()': src/CifFilePyWrap.C:168:157: warning: typedef 'GetAttributeValue_function_type' locally defined but not used [-Wunused-local-typedefs] typedef void ( ::CifFile::*GetAttributeValue_function_type )( ::std::string &,::std::string const &,::std::string const &,::std::string const & ) ; ^ src/CifFilePyWrap.C:182:203: warning: typedef 'GetAttributeValueIf_function_type' locally defined but not used [-Wunused-local-typedefs] typedef void ( ::CifFile::*GetAttributeValueIf_function_type )( ::std::string &,::std::string const &,::std::string const &,::std::string const &,::std::string const &,::std::string const & ) ; ^ src/CifFilePyWrap.C:196:173: warning: typedef 'GetAttributeValues_function_type' locally defined but not used [-Wunused-local-typedefs] typedef void ( ::CifFile::*GetAttributeValues_function_type )( ::std::vector< std::string > &,::std::string const &,::std::string const &,::std::string const & ) ; ^ src/CifFilePyWrap.C:210:219: warning: typedef 'GetAttributeValuesIf_function_type' locally defined but not used [-Wunused-local-typedefs] typedef void ( ::CifFile::*GetAttributeValuesIf_function_type )( ::std::vector< std::string > &,::std::string const &,::std::string const &,::std::string const &,::std::string const &,::std::string const & ) ; ^ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../include -I/usr/include/python2.7 -c src/DicFilePyWrap.C -o build/temp.linux-aarch64-2.7/src/DicFilePyWrap.o -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../include -I/usr/include/python2.7 -c src/PdbMlFilePyWrap.C -o build/temp.linux-aarch64-2.7/src/PdbMlFilePyWrap.o -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../include -I/usr/include/python2.7 -c src/DictObjFilePyWrap.C -o build/temp.linux-aarch64-2.7/src/DictObjFilePyWrap.o -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../include -I/usr/include/python2.7 -c src/CharPyWrap.C -o build/temp.linux-aarch64-2.7/src/CharPyWrap.o -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../include -I/usr/include/python2.7 -c src/TypeCodePyWrap.C -o build/temp.linux-aarch64-2.7/src/TypeCodePyWrap.o -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW creating build/lib.linux-aarch64-2.7 aarch64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/librcsb-core-wrapper-1.005=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-2.7/src/DataInfoPyWrap.o build/temp.linux-aarch64-2.7/src/RcsbFilePyWrap.o build/temp.linux-aarch64-2.7/src/DictDataInfoPyWrap.o build/temp.linux-aarch64-2.7/src/CorePyWrap.o build/temp.linux-aarch64-2.7/src/TableFilePyWrap.o build/temp.linux-aarch64-2.7/src/CifDataInfoPyWrap.o build/temp.linux-aarch64-2.7/src/ISTablePyWrap.o build/temp.linux-aarch64-2.7/src/StlPyWrap.o build/temp.linux-aarch64-2.7/src/CifFilePyWrap.o build/temp.linux-aarch64-2.7/src/DicFilePyWrap.o build/temp.linux-aarch64-2.7/src/PdbMlFilePyWrap.o build/temp.linux-aarch64-2.7/src/DictObjFilePyWrap.o build/temp.linux-aarch64-2.7/src/CharPyWrap.o build/temp.linux-aarch64-2.7/src/TypeCodePyWrap.o -L../../lib/.libs -lrcsb-core-wrapper -lboost_python27 -o build/lib.linux-aarch64-2.7/CorePyWrap.so dh override_dh_auto_build --with python2 make[1]: Leaving directory '/build/librcsb-core-wrapper-1.005' dh_auto_test make -j8 test make[1]: Entering directory '/build/librcsb-core-wrapper-1.005' ------- compile targets are compile_lnx_38, compile_lnx_41, compile_wwpdb_py27 and compile_osx ------- ------------------------------------------------------------ **** Testing dict-obj-file **** ------------------------------------------------------------ make[2]: Entering directory '/build/librcsb-core-wrapper-1.005/dict-obj-file' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. Creating mmCIF/DDL object dictionary DictObjFileCreator Version 8.0 Dictionary SDB filename: ./mmcif_std.sdb Object filename: ./mmcif_std.odb Number of dictionary datablocks: 1 Building dictionary object: mmcif_std.dic Writing dictionary object: mmcif_std.dic Last index = 19806 Return code = 0 Running reading test 1 Running reading test 2 Tests execution time is 1 seconds. make[2]: Leaving directory '/build/librcsb-core-wrapper-1.005/dict-obj-file' ------------------------------------------------------------ **** Testing pdbml-parser **** ------------------------------------------------------------ make[2]: Entering directory '/build/librcsb-core-wrapper-1.005/pdbml-parser' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. /build/librcsb-core-wrapper-1.005/pdbml-parser/test/1ysh.xml Saving 1 columns and 5 rows in table audit_author Saving 19 columns and 1 rows in table pdbx_database_status Saving 5 columns and 1 rows in table database_PDB_rev Saving 7 columns and 3 rows in table struct_ref Saving 11 columns and 3 rows in table struct_ref_seq Saving 12 columns and 3 rows in table struct_ref_seq_dif Saving 3 columns and 1 rows in table struct_keywords Saving 3 columns and 1 rows in table em_assembly Saving 3 columns and 1 rows in table em_sample_preparation Saving 2 columns and 1 rows in table em_sample_support Saving 3 columns and 1 rows in table em_vitrification Saving 2 columns and 1 rows in table symmetry Saving 21 columns and 1 rows in table em_imaging Saving 3 columns and 1 rows in table em_detector Saving 3 columns and 1 rows in table refine Saving 4 columns and 1 rows in table em_3d_reconstruction Saving 13 columns and 1 rows in table database_PDB_matrix Saving 2 columns and 1 rows in table database_PDB_remark Saving 3 columns and 1 rows in table em_2d_projection_selection Saving 3 columns and 1 rows in table em_image_scans Saving 1 columns and 1 rows in table entry Saving 2 columns and 1 rows in table exptl Saving 2 columns and 9 rows in table ndb_struct_conf_na Saving 24 columns and 65 rows in table ndb_struct_na_base_pair Saving 43 columns and 59 rows in table ndb_struct_na_base_pair_step Saving 3 columns and 3 rows in table pdbx_entity_name Saving 3 columns and 1 rows in table software Saving 13 columns and 1 rows in table atom_sites Saving 11 columns and 1 rows in table citation Saving 2 columns and 1 rows in table computing Saving 2 columns and 3 rows in table database_2 Saving 6 columns and 6 rows in table entity Saving 3 columns and 424 rows in table entity_poly_seq Saving 6 columns and 6 rows in table entity_poly Saving 8 columns and 3 rows in table entity_src_nat Saving 10 columns and 424 rows in table pdbx_poly_seq_scheme Saving 8 columns and 1 rows in table refine_hist Saving 3 columns and 1 rows in table struct Saving 4 columns and 6 rows in table struct_asym Saving 4 columns and 6 rows in table struct_biol_gen Saving 17 columns and 11 rows in table struct_conf Saving 19 columns and 186 rows in table struct_conn Saving 2 columns and 1 rows in table struct_conn_type Saving 2 columns and 2 rows in table struct_sheet Saving 4 columns and 5 rows in table struct_sheet_order Saving 14 columns and 7 rows in table struct_sheet_range Saving 19 columns and 5 rows in table pdbx_struct_sheet_hbond Saving 1 columns and 5 rows in table atom_type Saving 6 columns and 24 rows in table chem_comp Saving 3 columns and 5 rows in table citation_author Saving 3 columns and 2 rows in table audit_conform Saving 3 columns and 1 rows in table audit Saving 2 columns and 1 rows in table pdbx_audit Saving 19 columns and 5576 rows in table atom_site /build/librcsb-core-wrapper-1.005/pdbml-parser/test/1ysh.xml Tests execution time is 1 seconds. make[2]: Leaving directory '/build/librcsb-core-wrapper-1.005/pdbml-parser' make[1]: Leaving directory '/build/librcsb-core-wrapper-1.005' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python2 dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/librcsb-core-wrapper-1.005' # lkajan: there is no real install mechanism in the upstream sources dh_auto_install --sourcedirectory=wrapper/python dh_auto_install: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_install: This feature will be removed in compat 12. pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions pyversions: missing debian/pyversions file, fall back to supported versions cd wrapper/python && python setup.py install --force --root=/build/librcsb-core-wrapper-1.005/debian/tmp --no-compile -O0 --install-layout=deb running install running build running build_ext running install_lib creating /build/librcsb-core-wrapper-1.005/debian/tmp creating /build/librcsb-core-wrapper-1.005/debian/tmp/usr creating /build/librcsb-core-wrapper-1.005/debian/tmp/usr/lib creating /build/librcsb-core-wrapper-1.005/debian/tmp/usr/lib/python2.7 creating /build/librcsb-core-wrapper-1.005/debian/tmp/usr/lib/python2.7/dist-packages copying build/lib.linux-aarch64-2.7/CorePyWrap.so -> /build/librcsb-core-wrapper-1.005/debian/tmp/usr/lib/python2.7/dist-packages running install_egg_info Writing /build/librcsb-core-wrapper-1.005/debian/tmp/usr/lib/python2.7/dist-packages/python_corepywrap-1.000.egg-info dh override_dh_auto_install --with python2 make[1]: Leaving directory '/build/librcsb-core-wrapper-1.005' dh_install debian/rules override_dh_installdocs make[1]: Entering directory '/build/librcsb-core-wrapper-1.005' dh_installdocs find debian -name "*.md5" -delete make[1]: Leaving directory '/build/librcsb-core-wrapper-1.005' dh_installchangelogs dh_installexamples dh_python2 I: dh_python2 fs:343: renaming CorePyWrap.so to CorePyWrap.aarch64-linux-gnu.so dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip debian/rules override_dh_makeshlibs make[1]: Entering directory '/build/librcsb-core-wrapper-1.005' dh_makeshlibs -V make[1]: Leaving directory '/build/librcsb-core-wrapper-1.005' dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package python-corepywrap: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package python-corepywrap: substitution variable ${python:Versions} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'librcsb-core-wrapper0' in '../librcsb-core-wrapper0_1.005-6_arm64.deb'. dpkg-deb: building package 'librcsb-core-wrapper0-dbgsym' in '../librcsb-core-wrapper0-dbgsym_1.005-6_arm64.deb'. dpkg-deb: building package 'librcsb-core-wrapper0-dev' in '../librcsb-core-wrapper0-dev_1.005-6_arm64.deb'. dpkg-deb: building package 'python-corepywrap' in '../python-corepywrap_1.005-6_arm64.deb'. dpkg-deb: building package 'python-corepywrap-dbgsym' in '../python-corepywrap-dbgsym_1.005-6_arm64.deb'. dpkg-deb: building package 'librcsb-core-wrapper-doc' in '../librcsb-core-wrapper-doc_1.005-6_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../librcsb-core-wrapper_1.005-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/7506 and its subdirectories I: Current time: Mon Aug 9 22:07:06 -12 2021 I: pbuilder-time-stamp: 1628590026