I: pbuilder: network access will be disabled during build I: Current time: Wed Nov 10 23:16:58 +14 2021 I: pbuilder-time-stamp: 1636535818 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libgo-perl_0.15-7.dsc] I: copying [./libgo-perl_0.15.orig.tar.gz] I: copying [./libgo-perl_0.15-7.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Oct 26 04:52:04 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libgo-perl_0.15-7.dsc dpkg-source: info: extracting libgo-perl in libgo-perl-0.15 dpkg-source: info: unpacking libgo-perl_0.15.orig.tar.gz dpkg-source: info: unpacking libgo-perl_0.15-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-whatis-entries.patch dpkg-source: info: applying fix-missing-manpages dpkg-source: info: applying fix-pod.patch dpkg-source: info: applying fix_test_xsltproc dpkg-source: info: applying fix_hash_in_go_io_dotty.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying spelling2.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/25476/tmp/hooks/D01_modify_environment starting debug: Running on codethink-sled11-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/25476/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/25476/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/var/lib/jenkins HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=25476 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.J1KQPmRrJf/pbuilderrc_pb6h --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.J1KQPmRrJf/b2 --logfile b2/build.log libgo-perl_0.15-7.dsc' SUDO_GID=117 SUDO_UID=110 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root USERNAME=root _='I: set' http_proxy=http://192.168.101.16:3128 I: uname -a Linux i-capture-the-hostname 4.4.0-190-generic #220-Ubuntu SMP Fri Aug 28 23:03:33 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 18 2019 bash -rwxr-xr-x 3 root root 34808 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 35576 Mar 1 2019 cat -rwxr-xr-x 1 root root 60256 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 56096 Mar 1 2019 chmod -rwxr-xr-x 1 root root 64368 Mar 1 2019 chown -rwxr-xr-x 1 root root 134632 Mar 1 2019 cp -rwxr-xr-x 1 root root 129536 Jan 18 2019 dash -rwxr-xr-x 1 root root 97136 Mar 1 2019 date -rwxr-xr-x 1 root root 76736 Mar 1 2019 dd -rwxr-xr-x 1 root root 93752 Mar 1 2019 df -rwxr-xr-x 1 root root 138848 Mar 1 2019 dir -rwxr-xr-x 1 root root 75984 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 27256 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 23 2020 fusermount -rwxr-xr-x 1 root root 174304 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 6 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 27 2018 hostname -rwxr-xr-x 1 root root 64472 Mar 1 2019 ln -rwxr-xr-x 1 root root 52544 Jul 27 2018 login -rwxr-xr-x 1 root root 138848 Mar 1 2019 ls -rwxr-xr-x 1 root root 108552 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 76840 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 64480 Mar 1 2019 mknod -rwxr-xr-x 1 root root 39736 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 10 2019 more -rwsr-xr-x 1 root root 47112 Jan 10 2019 mount -rwxr-xr-x 1 root root 14344 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 138736 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Mar 1 2019 readlink -rwxr-xr-x 1 root root 68440 Mar 1 2019 rm -rwxr-xr-x 1 root root 39624 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Nov 10 23:17 sh -> bash lrwxrwxrwx 1 root root 4 Nov 10 04:48 sh.distrib -> dash -rwxr-xr-x 1 root root 31384 Mar 1 2019 sleep -rwxr-xr-x 1 root root 72480 Mar 1 2019 stty -rwsr-xr-x 1 root root 59424 Jan 10 2019 su -rwxr-xr-x 1 root root 31416 Mar 1 2019 sync -rwxr-xr-x 1 root root 449416 Apr 24 2019 tar -rwxr-xr-x 1 root root 10560 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 88968 Mar 1 2019 touch -rwxr-xr-x 1 root root 27256 Mar 1 2019 true -rwxr-xr-x 1 root root 14264 Apr 23 2020 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 10 2019 umount -rwxr-xr-x 1 root root 31384 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 138848 Mar 1 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/25476/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), perl, libdata-stag-perl, libxml-libxslt-perl, libxml-writer-perl, libxml-checker-perl, xsltproc, libbio-perl-perl, rename dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libdata-stag-perl; however: Package libdata-stag-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-libxslt-perl; however: Package libxml-libxslt-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-writer-perl; however: Package libxml-writer-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-checker-perl; however: Package libxml-checker-perl is not installed. pbuilder-satisfydepends-dummy depends on xsltproc; however: Package xsltproc is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on rename; however: Package rename is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbio-perl-perl{a} libbsd0{a} libcroco3{a} libdata-stag-perl{a} libelf1{a} libencode-locale-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu63{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libsigsegv2{a} libssl1.1{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml-checker-perl{a} libxml-dom-perl{a} libxml-libxml-perl{a} libxml-libxslt-perl{a} libxml-namespacesupport-perl{a} libxml-parser-perl{a} libxml-perl{a} libxml-regexp-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml-writer-perl{a} libxml2{a} libxslt1.1{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} rename{a} sensible-utils{a} ucf{a} xsltproc{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libclone-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libglib2.0-data libgpm2 libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libxml-dom-xpath-perl libxml-sax-expat-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl lynx perl-tk shared-mime-info wget xdg-user-dirs 0 packages upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 29.0 MB of archives. After unpacking 99.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 netbase all 5.6 [19.4 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 ucf all 3.0038+nmu1 [69.0 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 openssl arm64 1.1.1d-0+deb10u3 [823 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 ca-certificates all 20190110 [157 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 libio-string-perl all 1.08-3 [12.3 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 libdata-stag-perl all 0.14-2 [448 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 libbio-perl-perl all 1.7.2-3 [4553 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 libencode-locale-perl all 1.05-1 [13.7 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 libtimedate-perl all 2.3000-2+deb10u1 [38.1 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 libhttp-date-perl all 6.02-1 [10.7 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 libfile-listing-perl all 6.04-1 [10.3 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 liburi-perl all 1.76-1 [89.9 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 libhtml-parser-perl arm64 3.72-3+b3 [103 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 libhtml-tree-perl all 5.07-2 [213 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 libio-html-perl all 1.001-1 [17.6 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 libhttp-message-perl all 6.18-1 [77.8 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 libhttp-cookies-perl all 6.04-1 [17.8 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 perl-openssl-defaults arm64 3 [6782 B] Get: 57 http://deb.debian.org/debian buster/main arm64 libnet-ssleay-perl arm64 1.85-2+b1 [303 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 libnet-http-perl all 6.18-1 [24.5 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 libwww-perl all 6.36-2 [188 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 liblwp-protocol-https-perl all 6.07-2 [9242 B] Get: 64 http://deb.debian.org/debian buster/main arm64 libxml-parser-perl arm64 2.44-4 [212 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 libxml-perl all 0.08-3 [93.3 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 libxml-regexp-perl all 0.04-1 [8370 B] Get: 67 http://deb.debian.org/debian buster/main arm64 libxml-dom-perl all 1.44-2 [179 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 libxml-checker-perl all 0.13-6 [44.9 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get: 70 http://deb.debian.org/debian buster/main arm64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get: 71 http://deb.debian.org/debian buster/main arm64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get: 72 http://deb.debian.org/debian buster/main arm64 libxml-libxml-perl arm64 2.0134+dfsg-1 [334 kB] Get: 73 http://deb.debian.org/debian buster/main arm64 libxslt1.1 arm64 1.1.32-2.2~deb10u1 [225 kB] Get: 74 http://deb.debian.org/debian buster/main arm64 libxml-libxslt-perl arm64 1.96-1+b1 [46.7 kB] Get: 75 http://deb.debian.org/debian buster/main arm64 libxml-writer-perl all 0.625-1 [29.7 kB] Get: 76 http://deb.debian.org/debian buster/main arm64 rename all 1.10-1 [17.2 kB] Get: 77 http://deb.debian.org/debian buster/main arm64 xsltproc arm64 1.1.32-2.2~deb10u1 [121 kB] Fetched 29.0 MB in 2s (13.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... 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Selecting previously unselected package libxml-parser-perl. Preparing to unpack .../63-libxml-parser-perl_2.44-4_arm64.deb ... Unpacking libxml-parser-perl (2.44-4) ... Selecting previously unselected package libxml-perl. Preparing to unpack .../64-libxml-perl_0.08-3_all.deb ... Unpacking libxml-perl (0.08-3) ... Selecting previously unselected package libxml-regexp-perl. Preparing to unpack .../65-libxml-regexp-perl_0.04-1_all.deb ... Unpacking libxml-regexp-perl (0.04-1) ... Selecting previously unselected package libxml-dom-perl. Preparing to unpack .../66-libxml-dom-perl_1.44-2_all.deb ... Unpacking libxml-dom-perl (1.44-2) ... Selecting previously unselected package libxml-checker-perl. Preparing to unpack .../67-libxml-checker-perl_0.13-6_all.deb ... Unpacking libxml-checker-perl (0.13-6) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../68-libxml-namespacesupport-perl_1.12-1_all.deb ... 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Preparing to unpack .../74-libxml-writer-perl_0.625-1_all.deb ... Unpacking libxml-writer-perl (0.625-1) ... Selecting previously unselected package rename. Preparing to unpack .../75-rename_1.10-1_all.deb ... Unpacking rename (1.10-1) ... Selecting previously unselected package xsltproc. Preparing to unpack .../76-xsltproc_1.1.32-2.2~deb10u1_arm64.deb ... Unpacking xsltproc (1.1.32-2.2~deb10u1) ... Setting up libexpat1:arm64 (2.2.6-2+deb10u1) ... Setting up libpipeline1:arm64 (1.5.1-2) ... Setting up libxml-regexp-perl (0.04-1) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:arm64 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up libmagic1:arm64 (1:5.35-4+deb10u1) ... Setting up perl-openssl-defaults:arm64 (3) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libencode-locale-perl (1.05-1) ... Setting up rename (1.10-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:arm64 (63.1-6+deb10u1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up autotools-dev (20180224.1) ... Setting up libxml-writer-perl (0.625-1) ... Setting up libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up libio-html-perl (1.001-1) ... Setting up autopoint (0.19.8.1-9) ... Setting up libtimedate-perl (2.3000-2+deb10u1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up netbase (5.6) ... Setting up libbio-perl-perl (1.7.2-3) ... Setting up openssl (1.1.1d-0+deb10u3) ... Setting up libbsd0:arm64 (0.9.1-2) ... Setting up libelf1:arm64 (0.176-1.1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Setting up liburi-perl (1.76-1) ... Setting up libnet-ssleay-perl (1.85-2+b1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libtool (2.4.6-9) ... Setting up libnet-http-perl (6.18-1) ... Setting up m4 (1.4.18-2) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:arm64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up libxslt1.1:arm64 (1.1.32-2.2~deb10u1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up libhttp-message-perl (6.18-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhttp-negotiate-perl (6.01-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libhttp-cookies-perl (6.04-1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up xsltproc (1.1.32-2.2~deb10u1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up po-debconf (1.0.21) ... Setting up libxml-libxslt-perl (1.96-1+b1) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up libwww-perl (6.36-2) ... Setting up dh-autoreconf (19) ... Setting up libxml-parser-perl (2.44-4) ... Setting up debhelper (12.1.1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up libxml-perl (0.08-3) ... Setting up libxml-dom-perl (1.44-2) ... Setting up libxml-checker-perl (0.13-6) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libgo-perl-0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libgo-perl dpkg-buildpackage: info: source version 0.15-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/build/libgo-perl-0.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/libgo-perl-0.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for GO Writing MYMETA.yml and MYMETA.json dh_auto_build make -j8 make[1]: Entering directory '/build/libgo-perl-0.15' cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm cp GO/Handlers/obj.pm blib/lib/GO/Handlers/obj.pm cp GO/Handlers/text_html.pm blib/lib/GO/Handlers/text_html.pm cp GO/Handlers/pathlist.pm blib/lib/GO/Handlers/pathlist.pm cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm cp GO/IO/Blast.pm blib/lib/GO/IO/Blast.pm cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm cp GO/IO/XML.pm blib/lib/GO/IO/XML.pm cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm cp GO/Handlers/obo_sxpr.pm blib/lib/GO/Handlers/obo_sxpr.pm cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm cp GO/Model/DB.pm blib/lib/GO/Model/DB.pm cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm cp GO/IO/Dotty.pm blib/lib/GO/IO/Dotty.pm cp GO/Basic.pm blib/lib/GO/Basic.pm cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm cp GO/Handlers/obj_yaml.pm blib/lib/GO/Handlers/obj_yaml.pm cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm cp GO/Handlers/go_def.pm blib/lib/GO/Handlers/go_def.pm cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm cp GO/Handlers/abstract_prolog_writer.pm blib/lib/GO/Handlers/abstract_prolog_writer.pm cp GO/Handlers/owl.pm blib/lib/GO/Handlers/owl.pm cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm cp GO/Parsers/go_ids_parser.pm blib/lib/GO/Parsers/go_ids_parser.pm cp GO/Parsers/mesh_parser.pm blib/lib/GO/Parsers/mesh_parser.pm cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm cp GO/Model/Modification.pm blib/lib/GO/Model/Modification.pm cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm cp GO/Model/Relationship.pm blib/lib/GO/Model/Relationship.pm cp GO/Model/Term.pm blib/lib/GO/Model/Term.pm cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm cp GO/Parsers/ParserEventNames.pm blib/lib/GO/Parsers/ParserEventNames.pm cp GO/Parser.pm blib/lib/GO/Parser.pm cp GO/Parsers/go_def_parser.pm blib/lib/GO/Parsers/go_def_parser.pm cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm cp GO/Parsers/obo_parser.pm blib/lib/GO/Parsers/obo_parser.pm cp GO/Model/Graph.pm blib/lib/GO/Model/Graph.pm cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm cp GO/Parsers/ncbi_taxonomy_parser.pm blib/lib/GO/Parsers/ncbi_taxonomy_parser.pm cp GO/Model/Ontology.pm blib/lib/GO/Model/Ontology.pm cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm cp GO/Model/GraphIterator.pm blib/lib/GO/Model/GraphIterator.pm cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm cp GO/Model/TreeIterator.pm blib/lib/GO/Model/TreeIterator.pm cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm cp GO/Model/Xref.pm blib/lib/GO/Model/Xref.pm cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm cp GO/Model/Evidence.pm blib/lib/GO/Model/Evidence.pm cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm cp GO/xsl/oboxml_to_racer.xsl blib/lib/GO/xsl/oboxml_to_racer.xsl cp GO/Utils.pm blib/lib/GO/Utils.pm cp GO/xsl/ipr_to_oboxml.xsl blib/lib/GO/xsl/ipr_to_oboxml.xsl cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm cp GO/xsl/oboxml_to_obotext.xsl blib/lib/GO/xsl/oboxml_to_obotext.xsl cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm cp GO/Parsers/unknown_format_parser.pm blib/lib/GO/Parsers/unknown_format_parser.pm cp GO/Parsers/references_parser.pm blib/lib/GO/Parsers/references_parser.pm cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl cp GO/xsl/oboxml_to_godb_prestore.xsl blib/lib/GO/xsl/oboxml_to_godb_prestore.xsl cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl cp GO/Parsers/owl_parser.pm blib/lib/GO/Parsers/owl_parser.pm cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl cp go-perl.pod blib/lib/go-perl.pod cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl cp GO/xsl/oboxml_to_simple_owl.xsl blib/lib/GO/xsl/oboxml_to_simple_owl.xsl cp GO/xsl/text_html.xsl blib/lib/GO/xsl/text_html.xsl cp GO/xsl/oboxml_to_owl.xsl blib/lib/GO/xsl/oboxml_to_owl.xsl cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm cp GO/xsl/oboxml_to_chadoxml.xsl blib/lib/GO/xsl/oboxml_to_chadoxml.xsl cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl cp scripts/go-apply-xslt blib/script/go-apply-xslt cp scripts/go-dag-summary.pl blib/script/go-dag-summary.pl cp scripts/go-export-graph.pl blib/script/go-export-graph.pl cp scripts/go-export-prolog.pl blib/script/go-export-prolog.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-apply-xslt "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-dag-summary.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-graph.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-prolog.pl cp scripts/go-filter-subset.pl blib/script/go-filter-subset.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-filter-subset.pl cp scripts/go-show-assocs-by-node.pl blib/script/go-show-assocs-by-node.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-assocs-by-node.pl cp scripts/go-show-paths-to-root.pl blib/script/go-show-paths-to-root.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-paths-to-root.pl cp scripts/go2chadoxml blib/script/go2chadoxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2chadoxml cp scripts/go2error_report blib/script/go2error_report "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2error_report cp scripts/go2fmt.pl blib/script/go2fmt.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2fmt.pl cp scripts/go2godb_prestore blib/script/go2godb_prestore "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2godb_prestore cp scripts/go2obo blib/script/go2obo "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo cp scripts/go2obo_html blib/script/go2obo_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_html cp scripts/go2obo_text blib/script/go2obo_text "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_text cp scripts/go2obo_xml blib/script/go2obo_xml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_xml cp scripts/go2owl blib/script/go2owl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2owl cp scripts/go2pathlist blib/script/go2pathlist "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2pathlist cp scripts/go2prolog blib/script/go2prolog "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2prolog cp scripts/go2rdf blib/script/go2rdf "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdf cp scripts/go2rdfxml blib/script/go2rdfxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdfxml cp scripts/go2summary blib/script/go2summary "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2summary cp scripts/go2sxpr blib/script/go2sxpr "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2sxpr cp scripts/go2tbl blib/script/go2tbl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2tbl cp scripts/go2text_html blib/script/go2text_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2text_html cp scripts/go2xml blib/script/go2xml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2xml cp scripts/map2slim blib/script/map2slim "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/map2slim Manifying 10 pod documents Manifying 38 pod documents Manifying 33 pod documents make[1]: Leaving directory '/build/libgo-perl-0.15' dh_auto_test make -j8 test TEST_VERBOSE=1 make[1]: Entering directory '/build/libgo-perl-0.15' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/t010build.t ............ 1..6 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:39 2021 # Current time GMT: Wed Nov 10 09:17:39 2021 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok t/t020paths.t ............ 1..7 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:39 2021 # Current time GMT: Wed Nov 10 09:17:39 2021 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok t/t030detecterror.t ...... 1..4 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:39 2021 # Current time GMT: Wed Nov 10 09:17:39 2021 # Using Test.pm version 1.31 ok 1 ok 2 '(error (message "\"synonym:krebs cycle\" doesn't look valid") (file "./t/data/test_bad_function.dat") (line " %high-potential iron-sulfur carrier ; synonym:krebs cycle" ) (line_no "6") (parse_class "GO::Parsers::go_ont_parser")) '(error (message "clash on GO:0015000; was 'obsolete' now 'not-polyferredoxin'" ) (file "./t/data/test_bad_function.dat") (line "%not-polyferredoxin ; GO:0015000") (line_no "8") (parse_class "GO::Parsers::go_ont_parser")) ok 3 '(error (message "\"synonym:krebs cycle\" doesn't look valid") (file "./t/data/test_bad_function.dat") (line " %high-potential iron-sulfur carrier ; synonym:krebs cycle" ) (line_no "6") (parse_class "GO::Parsers::go_ont_parser")) '(error (message "clash on GO:0015000; was 'obsolete' now 'not-polyferredoxin'" ) (file "./t/data/test_bad_function.dat") (line "%not-polyferredoxin ; GO:0015000") (line_no "8") (parse_class "GO::Parsers::go_ont_parser")) ok 4 ok t/t050oboformat.t ........ 1..6 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:39 2021 # Current time GMT: Wed Nov 10 09:17:39 2021 # Using Test.pm version 1.31 ok 1 ok 2 ROOT: molecular_function ROOT: biological_process ROOT: cellular_component ok 3 ok 4 EDGE|GO:0008263|GO:0008578|is_a EDGE|GO:0004844|GO:0008578|is_a EDGE|GO:0008534|GO:0008578|is_a EDGE|GO:0003907|GO:0008578|is_a EDGE|GO:0008578|GO:0003824|is_a EDGE|GO:0003704|GO:0003702|is_a EDGE|GO:0003677|GO:0003676|is_a EDGE|GO:0003676|GO:0003674|is_a EDGE|GO:0003700|GO:0003677|is_a EDGE|GO:0003692|GO:0003677|is_a EDGE|GO:0003682|GO:0003677|is_a EDGE|GO:0003695|GO:0003677|is_a EDGE|GO:0003685|GO:0003677|is_a EDGE|GO:0003720|GO:0003677|is_a EDGE|GO:0003681|GO:0003677|is_a EDGE|GO:0003687|GO:0003677|is_a EDGE|GO:0003697|GO:0003677|is_a EDGE|GO:0003678|GO:0003677|is_a EDGE|GO:0003696|GO:0003677|is_a EDGE|GO:0000217|GO:0003677|is_a EDGE|GO:0003693|GO:0003677|is_a EDGE|GO:0000182|GO:0003677|is_a EDGE|GO:0003694|GO:0003677|is_a EDGE|GO:0003684|GO:0003677|is_a EDGE|GO:0003680|GO:0003677|is_a EDGE|GO:0008301|GO:0003677|is_a EDGE|GO:0003690|GO:0003677|is_a EDGE|GO:0003677|GO:0003676|is_a EDGE|GO:0003691|GO:0003720|is_a EDGE|GO:0003691|GO:0003690|is_a EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0003705|GO:0003702|is_a EDGE|GO:0000133|GO:0005938|part_of EDGE|GO:0000133|GO:0005934|part_of EDGE|GO:0000133|GO:0005935|part_of EDGE|GO:0043025|GO:0005623|part_of EDGE|GO:0004844|GO:0003686|is_a EDGE|GO:0004844|GO:0008578|is_a EDGE|GO:0000182|GO:0003677|is_a EDGE|GO:0048148|GO:0042220|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0003703|GO:0003702|is_a EDGE|GO:0003717|GO:0003715|is_a EDGE|GO:0003716|GO:0003715|is_a EDGE|GO:0003718|GO:0003715|is_a EDGE|GO:0003715|GO:0003700|is_a EDGE|GO:0003688|GO:0003687|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0008416|GO:0003824|is_a EDGE|GO:0003716|GO:0003715|is_a EDGE|GO:0003691|GO:0003690|is_a EDGE|GO:0000150|GO:0003690|is_a EDGE|GO:0003690|GO:0003677|is_a EDGE|GO:0003707|GO:0003706|is_a EDGE|GO:0003707|GO:0004879|is_a EDGE|GO:0003676|GO:0003674|is_a EDGE|GO:0003824|GO:0003674|is_a EDGE|GO:0003717|GO:0003715|is_a EDGE|GO:0003708|GO:0003706|is_a EDGE|GO:0003707|GO:0003706|is_a EDGE|GO:0003706|GO:0003702|is_a EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0000299|GO:0005624|is_a EDGE|GO:0000217|GO:0003677|is_a EDGE|GO:0004844|GO:0003686|is_a EDGE|GO:0008263|GO:0003686|is_a EDGE|GO:0003907|GO:0003686|is_a EDGE|GO:0003686|GO:0003824|is_a EDGE|GO:0003686|GO:0003685|is_a EDGE|GO:0008336|GO:0003824|is_a EDGE|GO:0008578|GO:0003824|is_a EDGE|GO:0003837|GO:0003824|is_a EDGE|GO:0003908|GO:0003824|is_a EDGE|GO:0003906|GO:0003824|is_a EDGE|GO:0008461|GO:0003824|is_a EDGE|GO:0003832|GO:0003824|is_a EDGE|GO:0003686|GO:0003824|is_a EDGE|GO:0003833|GO:0003824|is_a EDGE|GO:0003905|GO:0003824|is_a EDGE|GO:0008416|GO:0003824|is_a EDGE|GO:0008464|GO:0003824|is_a EDGE|GO:0008111|GO:0003824|is_a EDGE|GO:0003839|GO:0003824|is_a EDGE|GO:0003826|GO:0003824|is_a EDGE|GO:0003834|GO:0003824|is_a EDGE|GO:0008488|GO:0003824|is_a EDGE|GO:0003904|GO:0003824|is_a EDGE|GO:0003825|GO:0003824|is_a EDGE|GO:0008456|GO:0003824|is_a EDGE|GO:0003840|GO:0003824|is_a EDGE|GO:0003824|GO:0003674|is_a EDGE|GO:0003688|GO:0003687|is_a EDGE|GO:0003689|GO:0003687|is_a EDGE|GO:0003687|GO:0003677|is_a EDGE|GO:0008159|GO:0003711|is_a EDGE|GO:0003839|GO:0003824|is_a EDGE|GO:0003718|GO:0003715|is_a EDGE|GO:0003708|GO:0003706|is_a EDGE|GO:0003708|GO:0004879|is_a EDGE|GO:0008488|GO:0003824|is_a EDGE|GO:0003825|GO:0003824|is_a EDGE|GO:0003840|GO:0003824|is_a EDGE|GO:0003678|GO:0004386|is_a EDGE|GO:0003678|GO:0003677|is_a EDGE|GO:0003832|GO:0003824|is_a EDGE|GO:0003683|GO:0003682|is_a EDGE|GO:0008461|GO:0003824|is_a EDGE|GO:0003686|GO:0003685|is_a EDGE|GO:0003685|GO:0003677|is_a EDGE|GO:0003692|GO:0003677|is_a EDGE|GO:0000144|GO:0030481|is_a EDGE|GO:0000144|GO:0000142|part_of EDGE|GO:0008263|GO:0003686|is_a EDGE|GO:0008263|GO:0008578|is_a EDGE|GO:0003826|GO:0003824|is_a EDGE|GO:0003684|GO:0003677|is_a EDGE|GO:0005626|GO:0000267|is_a EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0003908|GO:0008172|is_a EDGE|GO:0003908|GO:0003824|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0003681|GO:0003677|is_a EDGE|GO:0008464|GO:0003824|is_a EDGE|GO:0008301|GO:0003677|is_a EDGE|GO:0003704|GO:0003702|is_a EDGE|GO:0003705|GO:0003702|is_a EDGE|GO:0003706|GO:0003702|is_a EDGE|GO:0003703|GO:0003702|is_a EDGE|GO:0003702|GO:0003700|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008534|GO:0008578|is_a EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0005935|GO:0005933|part_of EDGE|GO:0005934|GO:0005933|part_of EDGE|GO:0005933|GO:0005623|part_of EDGE|GO:0005933|GO:0005623|part_of EDGE|GO:0043025|GO:0005623|part_of EDGE|GO:0000267|GO:0005623|part_of EDGE|GO:0005623|GO:0005575|is_a EDGE|GO:0000150|GO:0003690|is_a EDGE|GO:0003709|GO:0003700|is_a EDGE|GO:0008148|GO:0003711|is_a EDGE|GO:0000133|GO:0005935|part_of EDGE|GO:0000142|GO:0005935|part_of EDGE|GO:0005935|GO:0005933|part_of EDGE|GO:0005935|GO:0000134|is_a EDGE|GO:0003680|GO:0003677|is_a EDGE|GO:0000299|GO:0005624|is_a EDGE|GO:0005624|GO:0000267|is_a EDGE|GO:0000133|GO:0005934|part_of EDGE|GO:0005934|GO:0000134|is_a EDGE|GO:0005934|GO:0005933|part_of EDGE|GO:0008336|GO:0003824|is_a EDGE|GO:0003837|GO:0003824|is_a EDGE|GO:0005623|GO:0005575|is_a EDGE|GO:0003710|GO:0003700|is_a EDGE|GO:0005624|GO:0000267|is_a EDGE|GO:0005626|GO:0000267|is_a EDGE|GO:0000267|GO:0005623|part_of EDGE|GO:0003696|GO:0003677|is_a EDGE|GO:0003905|GO:0003824|is_a EDGE|GO:0003711|GO:0003700|is_a EDGE|GO:0003715|GO:0003700|is_a EDGE|GO:0003702|GO:0003700|is_a EDGE|GO:0003701|GO:0003700|is_a EDGE|GO:0003709|GO:0003700|is_a EDGE|GO:0003710|GO:0003700|is_a EDGE|GO:0003700|GO:0003677|is_a EDGE|GO:0003697|GO:0003677|is_a EDGE|GO:0003721|GO:0003964|is_a EDGE|GO:0003721|GO:0003720|is_a EDGE|GO:0003904|GO:0003824|is_a EDGE|GO:0003904|GO:0003913|is_a EDGE|GO:0003689|GO:0003687|is_a EDGE|GO:0008456|GO:0003824|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0048149|GO:0045471|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0003906|GO:0003824|is_a EDGE|GO:0003693|GO:0003677|is_a EDGE|GO:0003695|GO:0003677|is_a EDGE|GO:0003833|GO:0003824|is_a EDGE|GO:0003683|GO:0003682|is_a EDGE|GO:0003682|GO:0003677|is_a EDGE|GO:0003907|GO:0008578|is_a EDGE|GO:0003907|GO:0003686|is_a EDGE|GO:0003721|GO:0003720|is_a EDGE|GO:0003691|GO:0003720|is_a EDGE|GO:0003720|GO:0003677|is_a EDGE|GO:0008111|GO:0003824|is_a EDGE|GO:0003701|GO:0003700|is_a EDGE|GO:0003834|GO:0003824|is_a EDGE|GO:0008148|GO:0003711|is_a EDGE|GO:0008159|GO:0003711|is_a EDGE|GO:0003711|GO:0003700|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0003694|GO:0003677|is_a EDGE|GO:0000144|GO:0000142|part_of EDGE|GO:0000142|GO:0005935|part_of EDGE|GO:0000142|GO:0030480|is_a total parent rels:118 total (both ways):218 ok 5 ok 6 ok t/t060oboformat2.t ....... 1..36 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:40 2021 # Current time GMT: Wed Nov 10 09:17:40 2021 # Using Test.pm version 1.31 ok 1 Parsing: ./t/data/go-truncated.obo ok 2 ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: root ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: Part of TERMS: 29 DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a SYNS:fake synonym|FAKE:0001|class I PI3K EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007636|GO:0007635|is_a DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0035094|is_a EDGE|GO:0035095|GO:0030534|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a DEFXREFS:GO:jic EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048149|GO:0045471|is_a SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0042630|GO:0009414|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a DEFXREFS:GO:ai EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0008344|GO:0007626|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0048266|GO:0048265|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0001662|GO:0042596|is_a DEFXREFS:GO:jic EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0008150|root|is_a SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of DEFXREFS:GO:jic EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048148|GO:0042220|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a DEFXREFS:GO:mah EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0008343|GO:0007631|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a DEFXREFS:GO:curators EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a DEFXREFS:GO:curators EDGE|GO:0042595|GO:0042594|is_a EDGE|GO:0042595|GO:0007631|is_a total defs:27 total def xrefs:42 total xrefs:2 total comments:2 total syns:12 total EXACT syns:1 total obs:1 total parent rels:37 total (both ways):64 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ./t/data/go-truncated.obo from:obo_text to:obo_xml ok 13 Parsing: ./t/data/go-truncated.obo.obo_xml ok 14 ROOT: Part of ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: root ROOT: 1-phosphatidylinositol-4-phosphate kinase TERMS: 29 DEFXREFS:GO:curators EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042595|GO:0042594|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a DEFXREFS:GO:curators EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:GO:mah EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0008343|GO:0030534|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of DEFXREFS:GO:jic EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048148|GO:0042220|is_a SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048150|GO:0045472|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0001662|GO:0042596|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0048266|GO:0048265|is_a DEFXREFS:GO:ai EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0008344|GO:0030534|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0042630|GO:0009414|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a DEFXREFS:GO:jic EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048149|GO:0045471|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0035095|GO:0035094|is_a SYNS:fake synonym|FAKE:0001|class I PI3K EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007636|GO:0007630|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a total defs:27 total def xrefs:42 total xrefs:2 total comments:2 total syns:12 total EXACT syns:1 total obs:1 total parent rels:37 total (both ways):64 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ./t/data/go-truncated.obo.obo_xml from:obo_xml to:obo_text ok 25 Parsing: ./t/data/go-truncated.obo.obo_xml.obo_text ok 26 ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: root ROOT: Part of ROOT: 1-phosphatidylinositol-4-phosphate kinase TERMS: 29 DEFXREFS:GO:jic EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048150|GO:0045472|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0001662|GO:0042596|is_a SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a EDGE|GO:0008150|root|is_a DEFXREFS:GO:curators EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a DEFXREFS:GO:mah EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0008343|GO:0030534|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of DEFXREFS:GO:jic EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048148|GO:0042220|is_a DEFXREFS:GO:curators EDGE|GO:0042595|GO:0042594|is_a EDGE|GO:0042595|GO:0007631|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a SYNS:class I PI3K|FAKE:0001|fake synonym EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0035095|GO:0035094|is_a DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007636|GO:0007630|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0009414|is_a EDGE|GO:0042630|GO:0007610|is_a DEFXREFS:GO:jic EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048149|GO:0045471|is_a SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0048266|GO:0048265|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a DEFXREFS:GO:ai EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0008344|GO:0030534|is_a total defs:27 total def xrefs:42 total xrefs:2 total comments:2 total syns:12 total EXACT syns:1 total obs:1 total parent rels:37 total (both ways):64 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok t/t070parseannot2obj.t ... 1..5 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:40 2021 # Current time GMT: Wed Nov 10 09:17:40 2021 # Using Test.pm version 1.31 ok 1 ok 2 TERM: GO:0003673 Gene_Ontology *DEEP: 86 TERM: GO:0008150 biological_process *DEEP: 52 TERM: GO:0007610 behavior *DEEP: 0 TERM: GO:0000004 biological_process unknown PROD: ziplock *DEEP: 1 TERM: GO:0007154 cell communication *DEEP: 3 TERM: GO:0008037 cell recognition *DEEP: 0 TERM: GO:0007267 cell-cell signaling *DEEP: 0 TERM: GO:0030383 host-pathogen interaction *DEEP: 0 TERM: GO:0009719 response to endogenous stimulus PROD: zip *DEEP: 1 TERM: GO:0009605 response to external stimulus *DEEP: 0 TERM: GO:0009628 response to abiotic stimulus *DEEP: 0 TERM: GO:0009607 response to biotic stimulus *DEEP: 0 TERM: GO:0007165 signal transduction PROD: zpg PROD: Zyx102EF *DEEP: 2 TERM: GO:0008151 cell growth and/or maintenance *DEEP: 18 TERM: GO:0007049 cell cycle PROD: zip PROD: zwilch *DEEP: 2 TERM: GO:0016049 cell growth *DEEP: 0 TERM: GO:0019725 cell homeostasis *DEEP: 0 TERM: GO:0016043 cell organization and biogenesis *DEEP: 3 TERM: GO:0007028 cytoplasm organization and biogenesis *DEEP: 3 TERM: GO:0006996 organelle organization and biogenesis *DEEP: 3 TERM: GO:0007010 cytoskeleton organization and biogenesis PROD: zip PROD: zip PROD: Zyx102EF *DEEP: 3 TERM: GO:0007005 mitochondrion organization and biogenesis *DEEP: 0 TERM: GO:0008283 cell proliferation PROD: zip *DEEP: 1 TERM: GO:0006943 chemi-mechanical coupling *DEEP: 0 TERM: GO:0008152 metabolism *DEEP: 10 TERM: GO:0006519 amino acid and derivative metabolism *DEEP: 0 TERM: GO:0009058 biosynthesis *DEEP: 0 TERM: GO:0005975 carbohydrate metabolism PROD: Zw *DEEP: 1 TERM: GO:0009056 catabolism PROD: Zw *DEEP: 1 TERM: GO:0006731 coenzymes and prosthetic group metabolism PROD: Zw *DEEP: 1 TERM: GO:0006118 electron transport *DEEP: 0 TERM: GO:0006091 energy pathways PROD: Zw *DEEP: 1 TERM: GO:0006629 lipid metabolism *DEEP: 0 TERM: GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolism PROD: Zw *DEEP: 6 TERM: GO:0006259 DNA metabolism *DEEP: 0 TERM: GO:0006350 transcription PROD: zfh2 PROD: Zfrp8 PROD: Zn72D PROD: Zpr1 PROD: Zyx102EF *DEEP: 5 TERM: GO:0019538 protein metabolism *DEEP: 0 TERM: GO:0006412 protein biosynthesis *DEEP: 0 TERM: GO:0006464 protein modification *DEEP: 0 TERM: GO:0019748 secondary metabolism *DEEP: 0 TERM: GO:0006950 response to stress *DEEP: 0 TERM: GO:0006810 transport *DEEP: 2 TERM: GO:0006811 ion transport PROD: ZIP1 PROD: Zip3 *DEEP: 2 TERM: GO:0015031 protein transport *DEEP: 0 TERM: GO:0016265 death *DEEP: 2 TERM: GO:0008219 cell death PROD: Zfrp8 PROD: zip *DEEP: 2 TERM: GO:0007275 development PROD: zip *DEEP: 23 TERM: GO:0030154 cell differentiation PROD: zip *DEEP: 1 TERM: GO:0009790 embryonic development PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip *DEEP: 5 TERM: GO:0040007 growth *DEEP: 0 TERM: GO:0009653 morphogenesis PROD: zfh2 PROD: zfh2 PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: Zwim *DEEP: 11 TERM: GO:0040029 regulation of gene expression, epigenetic *DEEP: 0 TERM: GO:0000003 reproduction PROD: zip PROD: ziti PROD: zpg PROD: zpg PROD: zuc *DEEP: 5 TERM: GO:0007582 physiological processes PROD: zip PROD: zip PROD: zip PROD: zormin PROD: Zyx102EF *DEEP: 5 TERM: GO:0016032 viral life cycle *DEEP: 0 TERM: GO:0005575 cellular_component *DEEP: 13 TERM: GO:0005623 cell PROD: zpg *DEEP: 11 TERM: GO:0005622 intracellular *DEEP: 10 TERM: GO:0005694 chromosome *DEEP: 0 TERM: GO:0005929 cilium *DEEP: 0 TERM: GO:0005737 cytoplasm PROD: zip *DEEP: 4 TERM: GO:0000229 cytoplasmic chromosome *DEEP: 0 TERM: GO:0016023 cytoplasmic vesicle *DEEP: 0 TERM: GO:0005856 cytoskeleton PROD: zip PROD: zip PROD: Zyx102EF *DEEP: 3 TERM: GO:0005829 cytosol *DEEP: 0 TERM: GO:0005783 endoplasmic reticulum *DEEP: 0 TERM: GO:0005768 endosome *DEEP: 0 TERM: GO:0005794 Golgi apparatus *DEEP: 0 TERM: GO:0005811 lipid particle *DEEP: 0 TERM: GO:0005815 microtubule organizing center *DEEP: 0 TERM: GO:0005739 mitochondrion *DEEP: 0 TERM: GO:0005777 peroxisome *DEEP: 0 TERM: GO:0009536 plastid *DEEP: 0 TERM: GO:0005840 ribosome *DEEP: 0 TERM: GO:0005773 vacuole *DEEP: 0 TERM: GO:0005764 lysosome *DEEP: 0 TERM: GO:0005634 nucleus PROD: zfh2 PROD: zfh2 PROD: Zfrp8 *DEEP: 4 TERM: GO:0000228 nuclear chromosome *DEEP: 0 TERM: GO:0005635 nuclear membrane *DEEP: 0 TERM: GO:0005730 nucleolus PROD: Zpr1 *DEEP: 1 TERM: GO:0005654 nucleoplasm *DEEP: 0 TERM: GO:0005886 plasma membrane PROD: zpg PROD: zpg *DEEP: 2 TERM: GO:0009579 thylakoid *DEEP: 0 TERM: GO:0008372 cellular_component unknown PROD: ziplock PROD: ziti *DEEP: 2 TERM: GO:0030312 external encapsulating structure *DEEP: 0 TERM: GO:0030313 cell envelope *DEEP: 0 TERM: GO:0005618 cell wall *DEEP: 0 TERM: GO:0005576 extracellular *DEEP: 0 TERM: GO:0005578 extracellular matrix *DEEP: 0 TERM: GO:0005615 extracellular space *DEEP: 0 TERM: GO:0005941 unlocalized *DEEP: 0 TERM: GO:0003674 molecular_function *DEEP: 21 TERM: GO:0016209 antioxidant activity *DEEP: 0 TERM: GO:0016329 apoptosis regulator activity *DEEP: 0 TERM: GO:0005488 binding *DEEP: 6 TERM: GO:0005509 calcium ion binding *DEEP: 0 TERM: GO:0030246 carbohydrate binding *DEEP: 0 TERM: GO:0008289 lipid binding *DEEP: 0 TERM: GO:0003676 nucleic acid binding *DEEP: 5 TERM: GO:0003677 DNA binding PROD: zfh2 PROD: zfh2 PROD: Zfrp8 *DEEP: 4 TERM: GO:0003682 chromatin binding PROD: Zfrp8 *DEEP: 1 TERM: GO:0003700 transcription factor activity *DEEP: 0 TERM: GO:0004518 nuclease activity *DEEP: 0 TERM: GO:0003723 RNA binding PROD: Zn72D *DEEP: 1 TERM: GO:0008135 translation factor activity, nucleic acid binding *DEEP: 0 TERM: GO:0000166 nucleotide binding *DEEP: 0 TERM: GO:0019825 oxygen binding *DEEP: 0 TERM: GO:0005515 protein binding *DEEP: 1 TERM: GO:0008092 cytoskeletal protein binding PROD: zip *DEEP: 1 TERM: GO:0003779 actin binding *DEEP: 0 TERM: GO:0003824 catalytic activity PROD: Zw PROD: Zw *DEEP: 4 TERM: GO:0016787 hydrolase PROD: zip *DEEP: 1 TERM: GO:0008233 peptidase activity *DEEP: 0 TERM: GO:0004721 protein phosphatase activity *DEEP: 0 TERM: GO:0016301 kinase *DEEP: 1 TERM: GO:0004672 protein kinase activity PROD: Zwim *DEEP: 1 TERM: GO:0016740 transferase *DEEP: 0 TERM: GO:0005194 cell adhesion molecule activity *DEEP: 0 TERM: GO:0003754 chaperone activity *DEEP: 0 TERM: GO:0030188 chaperone regulator activity *DEEP: 0 TERM: GO:0003793 defense/immunity protein activity *DEEP: 0 TERM: GO:0030234 enzyme regulator activity *DEEP: 0 TERM: GO:0005554 molecular_function unknown PROD: ziplock PROD: ziti *DEEP: 2 TERM: GO:0003774 motor activity PROD: zip *DEEP: 1 TERM: GO:0045735 nutrient reservoir activity *DEEP: 0 TERM: GO:0017028 protein stabilization activity *DEEP: 0 TERM: GO:0008638 protein tagging activity *DEEP: 0 TERM: GO:0004871 signal transducer activity *DEEP: 0 TERM: GO:0004872 receptor activity *DEEP: 0 TERM: GO:0005102 receptor binding *DEEP: 0 TERM: GO:0005198 structural molecule activity PROD: zip PROD: zormin PROD: Zyx102EF *DEEP: 3 TERM: GO:0030528 transcription regulator activity PROD: zfh2 PROD: Zyx102EF *DEEP: 2 TERM: GO:0045182 translation regulator *DEEP: 0 TERM: GO:0005215 transporter activity PROD: ZIP1 PROD: Zip3 PROD: zpg *DEEP: 3 TERM: GO:0005489 electron transporter activity *DEEP: 0 TERM: GO:0005216 ion channel activity *DEEP: 0 TERM: GO:0005326 neurotransmitter transporter activity *DEEP: 0 TERM: GO:0030533 triplet codon-amino acid adaptor activity *DEEP: 0 TERM: part_of part_of *DEEP: 0 ok 3 annots: 86 ok 4 Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene ok 5 ok t/t080gofmt2.t ........... 1..3 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:41 2021 # Current time GMT: Wed Nov 10 09:17:41 2021 # Using Test.pm version 1.31 ok 1 ok 2 '(term (id "GO:0003673") (name "Gene_Ontology") (is_root "1") (namespace "Gene_Ontology")) '(term (id "GO:0003674") (name "molecular_function") (namespace "molecular_function") (relationship (type "part_of") (to "GO:0003673"))) '(term (id "X:1") (name "zoo") (namespace "molecular_function") (is_a "GO:0003674")) '(term (id "X:2") (name "goo") (namespace "molecular_function") (relationship (type "inverse_of") (to "X:1"))) '(term (id "X;3") (name "poo") (namespace "molecular_function") (relationship (type "disjoint_from") (to "X:2"))) '(term (id "X:5") (name "ooh") (namespace "molecular_function") (relationship (type "star") (to "X;3"))) '(term (id "X:6") (name "moo") (namespace "molecular_function") (relationship (type "hash") (to "X:5"))) ok 3 ok t/t100roundtrip.t ........ 1..2 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:41 2021 # Current time GMT: Wed Nov 10 09:17:41 2021 # Using Test.pm version 1.31 ./t/data/test-function.dat from:go_ont to:prolog ./t/data/test-function.dat from:go_ont to:obo_xml ./t/data/test-function.dat from:go_ont to:rdf ./t/data/test-function.dat from:go_ont to:pathlist ./t/data/test-function.dat from:go_ont to:summary TOTAL TERMS : 72 TOTAL SYNS : 2 TOTAL XREFS : 17 ./t/data/test-function.dat from:go_ont to:obo_text ./t/data/test-function.dat.obo_text from:obo_text to:prolog ./t/data/test-function.dat.obo_text from:obo_text to:rdf ./t/data/test-function.dat.obo_text from:obo_text to:pathlist ./t/data/test-function.dat.obo_text from:obo_text to:summary TOTAL TERMS : 72 TOTAL SYNS : 2 TOTAL XREFS : 17 ./t/data/test-function.dat.obo_text from:obo_text to:obo_xml ./t/data/test-function.dat.obo_text.obo_xml from:obo_xml to:go_ont ok 1 ./t/data/GO.defs from:go_def to:obo_xml ./t/data/GO.defs.obo_xml from:obo_xml to:go_def ok 2 ok t/t110basic.t ............ 1..4 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:43 2021 # Current time GMT: Wed Nov 10 09:17:43 2021 # Using Test.pm version 1.31 GO:0016604 GO:0016604 ok 1 PARENTS nucleoplasm ok 2 Gene_Ontology cell cellular_component intracellular nucleoplasm nucleus ok 3 GO:0005654 RENT complex chromatin remodeling complex chromatin silencing complex nuclear body nuclear speck ok 4 GO:0005654 ok t/t130relations.t ........ 1..7 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:43 2021 # Current time GMT: Wed Nov 10 09:17:43 2021 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 OBO_REL:part_of ok 7 ok t/t140subgraph.t ......... 1..1 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:43 2021 # Current time GMT: Wed Nov 10 09:17:43 2021 # Using Test.pm version 1.31 $Gene_Ontology ; GO:0003673 %molecular_function ; GO:0003674 %nucleic acid binding ; GO:0003676 %DNA binding ; GO:0003677 %transcription factor ; GO:0003700 ; synonym:GO:0000130 ok 1 ok t/t150xref.t ............. 1..2 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:44 2021 # Current time GMT: Wed Nov 10 09:17:44 2021 # Using Test.pm version 1.31 ok 1 ok 2 ok t/t160logicaldef.t ....... 1..5 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:44 2021 # Current time GMT: Wed Nov 10 09:17:44 2021 # Using Test.pm version 1.31 ok 1 ns: biological_process ok 2 ldef ns: foo ok 3 GO:0007626 OBOL:during FBdv:00005336 GO:0007626 ok 4 ok 5 ok t/t170chadoxml.t ......... 1..9 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:45 2021 # Current time GMT: Wed Nov 10 09:17:45 2021 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok t/t175chadoxml_oborel.t .. 1..9 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:45 2021 # Current time GMT: Wed Nov 10 09:17:45 2021 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok t/t180ncbi_taxonomy.t .... 1..4 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:45 2021 # Current time GMT: Wed Nov 10 09:17:45 2021 # Using Test.pm version 1.31 ./t/data/sample.ncbi_taxonomy from:ncbi_taxonomy to:obo ok 1 ok 2 ok 3 Phenylobacterium immobile {test} ok 4 ok t/t200impliedlinks.t ..... 1..2 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:46 2021 # Current time GMT: Wed Nov 10 09:17:46 2021 # Using Test.pm version 1.31 ok 1 ok 2 ok t/t210cache.t ............ 1..6 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:47 2021 # Current time GMT: Wed Nov 10 09:17:47 2021 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok t/t220xref_esc.t ......... 1..6 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:47 2021 # Current time GMT: Wed Nov 10 09:17:47 2021 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 UM-BBD_pathwayID:2,4,5-t UM-BBD_pathwayID:2,4,5-t ok 4 ok 5 ok 6 ok t/t230term_expression.t .. 1..1 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:47 2021 # Current time GMT: Wed Nov 10 09:17:47 2021 # Using Test.pm version 1.31 GO:1234 part_of CL:abc GO:1234 part_of CL:abc part_of AO:999 GO:1234 part_of CL:abc part_of AO:999 has_coordinate x:left GO:1234 results_in_output_of CHEBI:765 ^part_of CL:abc part_of AO:999 has_coordinate x:left ok 1 ok t/t240ga2obj.t ........... 1..3 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:47 2021 # Current time GMT: Wed Nov 10 09:17:47 2021 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok t/t260oborel_in_chado.t .. 1..6 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:48 2021 # Current time GMT: Wed Nov 10 09:17:48 2021 # Using Test.pm version 1.31 OBO_REL part_of part_of relationship internal is_transitive cvterm_property_type is_transitive 1 1 OBO_REL part_of ok 1 relationship ok 2 ok 3 ok 4 ok 5 ok 6 ok t/t270oborel_in_owl.t .... 1..4 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:48 2021 # Current time GMT: Wed Nov 10 09:17:48 2021 # Using Test.pm version 1.31 '(owl:TransitiveProperty (@ (rdf:about "http://purl.org/obo/owl/OBO_REL#part_of")) (oboInOwl:hasOBONamespace "relationship") (oboInOwl:hasDbXref (oboInOwl:DbXref (rdfs:label "OBO_REL:part_of") (oboInOwl:hasURI (@ (rdf:datatype "http://www.w3.org/2001/XMLSchema#anyURI")) (. "http://purl.org/obo/owl/OBO_REL#OBO_REL_part_of" ))))) ok 1 http://purl.org/obo/owl/OBO_REL#part_of ok 2 '(owl:ObjectProperty (@ (rdf:about "http://purl.org/obo/owl/obo#foo")) (rdfs:label (@ (xml:lang "en")) (. "foo")) (rdfs:comment (@ (rdf:datatype "http://www.w3.org/2001/XMLSchema#string")) (. "for testing purposes"))) ok 3 '(owl:AnnotationProperty (@ (rdf:about "http://purl.org/obo/owl/obo#bar")) (rdfs:label (@ (xml:lang "en")) (. "bar")) (rdfs:comment (@ (rdf:datatype "http://www.w3.org/2001/XMLSchema#string")) (. "for testing purposes"))) ok 4 ok t/t290disjoint.t ......... 1..2 # Running under perl version 5.028001 for linux # Current time local: Wed Nov 10 23:17:49 2021 # Current time GMT: Wed Nov 10 09:17:49 2021 # Using Test.pm version 1.31 ok 1 GO:0009987 GO:0051704 ok 2 ok All tests successful. Files=24, Tests=140, 10 wallclock secs ( 0.30 usr 0.06 sys + 9.55 cusr 0.53 csys = 10.44 CPU) Result: PASS make[1]: Leaving directory '/build/libgo-perl-0.15' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j8 install DESTDIR=/build/libgo-perl-0.15/debian/libgo-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/libgo-perl-0.15' Manifying 10 pod documents Manifying 38 pod documents Manifying 33 pod documents Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/go-perl.pod Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Utils.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjFactory.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjCache.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Basic.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_godb_prestore.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/owl_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/unknown_format_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ont_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxonomy_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_emitter.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ParserEventNames.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Metadata/Panther.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Species.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Evidence.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/TreeIterator.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Ontology.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/LogicalDefinition.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Relationship.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/DB.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/CrossProduct.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/go_assoc.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/ObanOwl.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_def.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/summary.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/rdf.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/pathlist.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/text_html.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/base.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/map2slim.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2fmt.pl.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2error_report.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-paths-to-root.pl.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-assocs-by-node.pl.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-filter-subset.pl.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-export-prolog.pl.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-export-graph.pl.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-dag-summary.pl.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-apply-xslt.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/go-perl.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Utils.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::xrf_abbs_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::unknown_format_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::refgenomes_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::references_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::owl_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_xml_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_text_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obj_emitter.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxonomy_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxon_names_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mgi_assoc_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mesh_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::locuslink_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_xref_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ont_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ids_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_def_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_assoc_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::generic_tagval_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::base_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ParserEventNames.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjFactory.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjCache.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Xref.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::TreeIterator.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Term.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Species.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Seq.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Root.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Restriction.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Relationship.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Property.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Path.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Ontology.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Modification.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::LogicalDefinition.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphNodeInstance.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphIterator.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Graph.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GeneProduct.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Evidence.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::DB.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::CrossProduct.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Association.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Metadata::Panther.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::go_assoc.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::RDFXML.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::ObanOwl.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::OBDXML.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Dotty.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Blast.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Analysis.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::xsl_base.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::text_html.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::tbl.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::summary.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl_to_obo_text.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_text.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_html.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_godb_flat.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obj.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::godb_prestore.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_xref.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_ont.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_def.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::base.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Basic.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/map2slim Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2xml Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2text_html Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2sxpr Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdf Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2summary Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2tbl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdfxml Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2prolog Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2owl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2pathlist Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_xml Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_html Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2godb_prestore Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2fmt.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_text Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2error_report Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2chadoxml Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-paths-to-root.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-graph.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-prolog.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-assocs-by-node.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-filter-subset.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-dag-summary.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-apply-xslt make[1]: Leaving directory '/build/libgo-perl-0.15' debian/rules override_dh_install make[1]: Entering directory '/build/libgo-perl-0.15' dh_install prename 's/\.pl//' /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/* prename 's/\.pl//' /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/*.pl* make[1]: Leaving directory '/build/libgo-perl-0.15' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libgo-perl' in '../libgo-perl_0.15-7_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libgo-perl_0.15-7_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/25476/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/25476/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/25476 and its subdirectories I: Current time: Wed Nov 10 23:17:56 +14 2021 I: pbuilder-time-stamp: 1636535876