I: pbuilder: network access will be disabled during build
I: Current time: Sat Aug  7 08:01:55 -12 2021
I: pbuilder-time-stamp: 1628366515
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [libbio-tools-phylo-paml-perl_1.7.3-2.dsc]
I: copying [./libbio-tools-phylo-paml-perl_1.7.3.orig.tar.gz]
I: copying [./libbio-tools-phylo-paml-perl_1.7.3-2.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Jul 10 02:35:52 2018 -12
gpgv:                using RSA key D1E1316E93A760A8104D85FABB3A68018649AA06
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libbio-tools-phylo-paml-perl_1.7.3-2.dsc
dpkg-source: info: extracting libbio-tools-phylo-paml-perl in libbio-tools-phylo-paml-perl-1.7.3
dpkg-source: info: unpacking libbio-tools-phylo-paml-perl_1.7.3.orig.tar.gz
dpkg-source: info: unpacking libbio-tools-phylo-paml-perl_1.7.3-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying evolver-program-name.patch
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/30028/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='arm64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8'
  DISTRIBUTION=''
  HOME='/var/lib/jenkins'
  HOST_ARCH='arm64'
  IFS=' 	
  '
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='30028'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.bOOETxB7vw/pbuilderrc_jCTz --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.bOOETxB7vw/b1 --logfile b1/build.log libbio-tools-phylo-paml-perl_1.7.3-2.dsc'
  SUDO_GID='117'
  SUDO_UID='110'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  USERNAME='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://192.168.101.16:3128'
I: uname -a
  Linux codethink-sled9-arm64 4.4.0-184-generic #214-Ubuntu SMP Wed Jun 3 11:41:03 UTC 2020 aarch64 GNU/Linux
I: ls -l /bin
  total 4928
  -rwxr-xr-x 1 root root 1216928 Apr 17  2019 bash
  -rwxr-xr-x 3 root root   34808 Jul 10  2019 bunzip2
  -rwxr-xr-x 3 root root   34808 Jul 10  2019 bzcat
  lrwxrwxrwx 1 root root       6 Jul 10  2019 bzcmp -> bzdiff
  -rwxr-xr-x 1 root root    2227 Jul 10  2019 bzdiff
  lrwxrwxrwx 1 root root       6 Jul 10  2019 bzegrep -> bzgrep
  -rwxr-xr-x 1 root root    4877 Jun 24  2019 bzexe
  lrwxrwxrwx 1 root root       6 Jul 10  2019 bzfgrep -> bzgrep
  -rwxr-xr-x 1 root root    3641 Jul 10  2019 bzgrep
  -rwxr-xr-x 3 root root   34808 Jul 10  2019 bzip2
  -rwxr-xr-x 1 root root   14264 Jul 10  2019 bzip2recover
  lrwxrwxrwx 1 root root       6 Jul 10  2019 bzless -> bzmore
  -rwxr-xr-x 1 root root    1297 Jul 10  2019 bzmore
  -rwxr-xr-x 1 root root   35576 Feb 28  2019 cat
  -rwxr-xr-x 1 root root   60256 Feb 28  2019 chgrp
  -rwxr-xr-x 1 root root   56096 Feb 28  2019 chmod
  -rwxr-xr-x 1 root root   64368 Feb 28  2019 chown
  -rwxr-xr-x 1 root root  134632 Feb 28  2019 cp
  -rwxr-xr-x 1 root root  129536 Jan 17  2019 dash
  -rwxr-xr-x 1 root root   97136 Feb 28  2019 date
  -rwxr-xr-x 1 root root   76736 Feb 28  2019 dd
  -rwxr-xr-x 1 root root   93752 Feb 28  2019 df
  -rwxr-xr-x 1 root root  138848 Feb 28  2019 dir
  -rwxr-xr-x 1 root root   75984 Jan  9  2019 dmesg
  lrwxrwxrwx 1 root root       8 Sep 26  2018 dnsdomainname -> hostname
  lrwxrwxrwx 1 root root       8 Sep 26  2018 domainname -> hostname
  -rwxr-xr-x 1 root root   31368 Feb 28  2019 echo
  -rwxr-xr-x 1 root root      28 Jan  7  2019 egrep
  -rwxr-xr-x 1 root root   27256 Feb 28  2019 false
  -rwxr-xr-x 1 root root      28 Jan  7  2019 fgrep
  -rwxr-xr-x 1 root root   68792 Jan  9  2019 findmnt
  -rwsr-xr-x 1 root root   34824 Apr 22  2020 fusermount
  -rwxr-xr-x 1 root root  174304 Jan  7  2019 grep
  -rwxr-xr-x 2 root root    2345 Jan  5  2019 gunzip
  -rwxr-xr-x 1 root root    6375 Jan  5  2019 gzexe
  -rwxr-xr-x 1 root root   89656 Jan  5  2019 gzip
  -rwxr-xr-x 1 root root   18440 Sep 26  2018 hostname
  -rwxr-xr-x 1 root root   64472 Feb 28  2019 ln
  -rwxr-xr-x 1 root root   52544 Jul 26  2018 login
  -rwxr-xr-x 1 root root  138848 Feb 28  2019 ls
  -rwxr-xr-x 1 root root  108552 Jan  9  2019 lsblk
  -rwxr-xr-x 1 root root   76840 Feb 28  2019 mkdir
  -rwxr-xr-x 1 root root   64480 Feb 28  2019 mknod
  -rwxr-xr-x 1 root root   39736 Feb 28  2019 mktemp
  -rwxr-xr-x 1 root root   38840 Jan  9  2019 more
  -rwsr-xr-x 1 root root   47112 Jan  9  2019 mount
  -rwxr-xr-x 1 root root   14344 Jan  9  2019 mountpoint
  -rwxr-xr-x 1 root root  138736 Feb 28  2019 mv
  lrwxrwxrwx 1 root root       8 Sep 26  2018 nisdomainname -> hostname
  lrwxrwxrwx 1 root root      14 Feb 14  2019 pidof -> /sbin/killall5
  -rwxr-xr-x 1 root root   35560 Feb 28  2019 pwd
  lrwxrwxrwx 1 root root       4 Apr 17  2019 rbash -> bash
  -rwxr-xr-x 1 root root   43712 Feb 28  2019 readlink
  -rwxr-xr-x 1 root root   68440 Feb 28  2019 rm
  -rwxr-xr-x 1 root root   39624 Feb 28  2019 rmdir
  -rwxr-xr-x 1 root root   19144 Jan 21  2019 run-parts
  -rwxr-xr-x 1 root root  114016 Dec 22  2018 sed
  lrwxrwxrwx 1 root root       4 Aug  6 02:48 sh -> dash
  -rwxr-xr-x 1 root root   31384 Feb 28  2019 sleep
  -rwxr-xr-x 1 root root   72480 Feb 28  2019 stty
  -rwsr-xr-x 1 root root   59424 Jan  9  2019 su
  -rwxr-xr-x 1 root root   31416 Feb 28  2019 sync
  -rwxr-xr-x 1 root root  449416 Apr 23  2019 tar
  -rwxr-xr-x 1 root root   10560 Jan 21  2019 tempfile
  -rwxr-xr-x 1 root root   88968 Feb 28  2019 touch
  -rwxr-xr-x 1 root root   27256 Feb 28  2019 true
  -rwxr-xr-x 1 root root   14264 Apr 22  2020 ulockmgr_server
  -rwsr-xr-x 1 root root   30728 Jan  9  2019 umount
  -rwxr-xr-x 1 root root   31384 Feb 28  2019 uname
  -rwxr-xr-x 2 root root    2345 Jan  5  2019 uncompress
  -rwxr-xr-x 1 root root  138848 Feb 28  2019 vdir
  -rwxr-xr-x 1 root root   34824 Jan  9  2019 wdctl
  -rwxr-xr-x 1 root root     946 Jan 21  2019 which
  lrwxrwxrwx 1 root root       8 Sep 26  2018 ypdomainname -> hostname
  -rwxr-xr-x 1 root root    1983 Jan  5  2019 zcat
  -rwxr-xr-x 1 root root    1677 Jan  5  2019 zcmp
  -rwxr-xr-x 1 root root    5879 Jan  5  2019 zdiff
  -rwxr-xr-x 1 root root      29 Jan  5  2019 zegrep
  -rwxr-xr-x 1 root root      29 Jan  5  2019 zfgrep
  -rwxr-xr-x 1 root root    2080 Jan  5  2019 zforce
  -rwxr-xr-x 1 root root    7584 Jan  5  2019 zgrep
  -rwxr-xr-x 1 root root    2205 Jan  5  2019 zless
  -rwxr-xr-x 1 root root    1841 Jan  5  2019 zmore
  -rwxr-xr-x 1 root root    4552 Jan  5  2019 znew
I: user script /srv/workspace/pbuilder/30028/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper (>= 10), libbio-perl-perl, libbio-perl-run-perl, libdevel-checkbin-perl, libio-string-perl, paml, perl
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19168 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper (>= 10); however:
  Package debhelper is not installed.
 pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however:
  Package libbio-perl-perl is not installed.
 pbuilder-satisfydepends-dummy depends on libbio-perl-run-perl; however:
  Package libbio-perl-run-perl is not installed.
 pbuilder-satisfydepends-dummy depends on libdevel-checkbin-perl; however:
  Package libdevel-checkbin-perl is not installed.
 pbuilder-satisfydepends-dummy depends on libio-string-perl; however:
  Package libio-string-perl is not installed.
 pbuilder-satisfydepends-dummy depends on paml; however:
  Package paml is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbio-perl-perl{a} libbio-perl-run-perl{a} libbsd0{a} libcroco3{a} libdata-stag-perl{a} libdevel-checkbin-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libio-string-perl{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} paml{a} po-debconf{a} sensible-utils{a} 
The following packages are RECOMMENDED but will NOT be installed:
  curl libace-perl libalgorithm-diff-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libglib2.0-data libgpm2 libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl libipc-run-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk shared-mime-info wget xdg-user-dirs 
0 packages upgraded, 39 newly installed, 0 to remove and 0 not upgraded.
Need to get 25.0 MB of archives. After unpacking 90.3 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB]
Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB]
Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB]
Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB]
Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB]
Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB]
Get: 7 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB]
Get: 8 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB]
Get: 9 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB]
Get: 10 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB]
Get: 11 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB]
Get: 12 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB]
Get: 13 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB]
Get: 14 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB]
Get: 15 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB]
Get: 16 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB]
Get: 17 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB]
Get: 18 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB]
Get: 19 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB]
Get: 20 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB]
Get: 21 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB]
Get: 22 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB]
Get: 23 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB]
Get: 24 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB]
Get: 25 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB]
Get: 26 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB]
Get: 27 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB]
Get: 28 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB]
Get: 29 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB]
Get: 30 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB]
Get: 31 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 32 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB]
Get: 33 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB]
Get: 34 http://deb.debian.org/debian buster/main arm64 libio-string-perl all 1.08-3 [12.3 kB]
Get: 35 http://deb.debian.org/debian buster/main arm64 libdata-stag-perl all 0.14-2 [448 kB]
Get: 36 http://deb.debian.org/debian buster/main arm64 libbio-perl-perl all 1.7.2-3 [4553 kB]
Get: 37 http://deb.debian.org/debian buster/main arm64 libbio-perl-run-perl all 1.7.2-4 [748 kB]
Get: 38 http://deb.debian.org/debian buster/main arm64 libdevel-checkbin-perl all 0.04-1 [5418 B]
Get: 39 http://deb.debian.org/debian buster/main arm64 paml arm64 4.9h+dfsg-1 [639 kB]
Fetched 25.0 MB in 2s (11.5 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libbsd0:arm64.
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(Reading database ... 19168 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ...
Unpacking libbsd0:arm64 (0.9.1-2) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ...
Unpacking bsdmainutils (11.1.2+b1) ...
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Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ...
Unpacking libuchardet0:arm64 (0.0.6-3) ...
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Unpacking groff-base (1.22.4-3) ...
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fakeroot is already the newest version (1.23-1).
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I: Building the package
I: Running cd /build/libbio-tools-phylo-paml-perl-1.7.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b
dpkg-buildpackage: info: source package libbio-tools-phylo-paml-perl
dpkg-buildpackage: info: source version 1.7.3-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by David Miguel Susano Pinto <carandraug+dev@gmail.com>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 fakeroot debian/rules clean
dh clean
   dh_clean
 debian/rules build
dh build
   dh_update_autotools_config
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   dh_auto_configure
	perl -I. Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/build/libbio-tools-phylo-paml-perl-1.7.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/libbio-tools-phylo-paml-perl-1.7.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro"
Warning: prerequisite Bio::Tools::Run::Alignment::Clustalw 0 not found.
Warning: prerequisite Bio::Tools::Run::Alignment::TCoffee 0 not found.
Locating bin:basemlg... found at /usr/bin/basemlg.
Locating bin:codeml... found at /usr/bin/codeml.
Locating bin:paml-evolver... found at /usr/bin/paml-evolver.
Locating bin:yn00... found at /usr/bin/yn00.
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Bio::Tools::Phylo::PAML
Writing MYMETA.yml and MYMETA.json
   dh_auto_build
	make -j8
make[1]: Entering directory '/build/libbio-tools-phylo-paml-perl-1.7.3'
cp lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm blib/lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm
cp lib/Bio/Tools/Phylo/PAML/Codeml.pm blib/lib/Bio/Tools/Phylo/PAML/Codeml.pm
cp lib/Bio/Tools/Phylo/PAML/ModelResult.pm blib/lib/Bio/Tools/Phylo/PAML/ModelResult.pm
cp lib/Bio/Tools/Run/Phylo/PAML/Yn00.pm blib/lib/Bio/Tools/Run/Phylo/PAML/Yn00.pm
cp lib/Bio/Tools/Run/Phylo/PAML/Baseml.pm blib/lib/Bio/Tools/Run/Phylo/PAML/Baseml.pm
cp lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm blib/lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm
cp lib/Bio/Tools/Phylo/PAML/Result.pm blib/lib/Bio/Tools/Phylo/PAML/Result.pm
cp lib/Bio/Tools/Phylo/PAML.pm blib/lib/Bio/Tools/Phylo/PAML.pm
cp bin/bp_pairwise_kaks blib/script/bp_pairwise_kaks
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_pairwise_kaks
Manifying 1 pod document
Manifying 8 pod documents
make[1]: Leaving directory '/build/libbio-tools-phylo-paml-perl-1.7.3'
   dh_auto_test
	make -j8 test TEST_VERBOSE=1
make[1]: Entering directory '/build/libbio-tools-phylo-paml-perl-1.7.3'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t ........... 
1..9
ok 1 - Bio/Tools/Phylo/PAML.pm loaded ok
ok 2 - Bio/Tools/Phylo/PAML/Codeml.pm loaded ok
ok 3 - Bio/Tools/Phylo/PAML/ModelResult.pm loaded ok
ok 4 - Bio/Tools/Phylo/PAML/Result.pm loaded ok
ok 5 - Bio/Tools/Run/Phylo/PAML/Baseml.pm loaded ok
ok 6 - Bio/Tools/Run/Phylo/PAML/Codeml.pm loaded ok
ok 7 - Bio/Tools/Run/Phylo/PAML/Evolver.pm loaded ok
ok 8 - Bio/Tools/Run/Phylo/PAML/Yn00.pm loaded ok
ok 9 # skip bin/bp_pairwise_kaks isn't perl
ok
t/author-eol.t ........... skipped: these tests are for testing by the author
t/author-mojibake.t ...... skipped: these tests are for testing by the author
t/author-no-tabs.t ....... skipped: these tests are for testing by the author
t/author-pod-coverage.t .. skipped: these tests are for testing by the author
t/author-pod-syntax.t .... skipped: these tests are for testing by the author
t/PAML-parser.t .......... 
ok 1
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ok 162 - node\#8 reconstructed seq
ok 163 - ancestral AA
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ok 238 - NEB positively selected sites
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ok 250 - bug 3040
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1..255
ok
t/PAML-run.t ............. 
ok 1
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ok 3 - got results
ok 4 - got a result
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1..29
ok
All tests successful.
Files=8, Tests=293,  7 wallclock secs ( 0.17 usr  0.02 sys +  6.70 cusr  0.44 csys =  7.33 CPU)
Result: PASS
make[1]: Leaving directory '/build/libbio-tools-phylo-paml-perl-1.7.3'
   create-stamp debian/debhelper-build-stamp
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	make -j8 install DESTDIR=/build/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/build/libbio-tools-phylo-paml-perl-1.7.3'
Manifying 1 pod document
Manifying 8 pod documents
Installing /build/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Codeml.pm
Installing /build/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Baseml.pm
Installing /build/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Yn00.pm
Installing /build/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Evolver.pm
Installing /build/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Phylo/PAML.pm
Installing /build/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Phylo/PAML/Result.pm
Installing /build/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Phylo/PAML/ModelResult.pm
Installing /build/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Phylo/PAML/Codeml.pm
Installing /build/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man1/bp_pairwise_kaks.1p
Installing /build/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Yn00.3pm
Installing /build/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Evolver.3pm
Installing /build/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Codeml.3pm
Installing /build/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Baseml.3pm
Installing /build/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Phylo::PAML::Result.3pm
Installing /build/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Phylo::PAML::ModelResult.3pm
Installing /build/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Phylo::PAML::Codeml.3pm
Installing /build/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Phylo::PAML.3pm
Installing /build/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/bin/bp_pairwise_kaks
make[1]: Leaving directory '/build/libbio-tools-phylo-paml-perl-1.7.3'
   dh_installdocs
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dpkg-deb: building package 'libbio-tools-phylo-paml-perl' in '../libbio-tools-phylo-paml-perl_1.7.3-2_all.deb'.
 dpkg-genbuildinfo --build=binary
 dpkg-genchanges --build=binary >../libbio-tools-phylo-paml-perl_1.7.3-2_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/30028 and its subdirectories
I: Current time: Sat Aug  7 08:02:53 -12 2021
I: pbuilder-time-stamp: 1628366573