I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 30 09:24:56 +14 2020 I: pbuilder-time-stamp: 1603999496 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lambda-align_1.0.3-5.dsc] I: copying [./lambda-align_1.0.3.orig.tar.gz] I: copying [./lambda-align_1.0.3-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Jan 23 00:22:34 2019 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./lambda-align_1.0.3-5.dsc dpkg-source: info: extracting lambda-align in lambda-align-1.0.3 dpkg-source: info: unpacking lambda-align_1.0.3.orig.tar.gz dpkg-source: info: unpacking lambda-align_1.0.3-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying set-seqan-cmake-dir.patch dpkg-source: info: applying force-link-rt-pthread.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/13173/tmp/hooks/D01_modify_environment starting debug: Running on codethink-sled14-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/13173/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/13173/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/var/lib/jenkins HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=13173 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.jkIFtGEcEZ/pbuilderrc_dejR --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.jkIFtGEcEZ/b2 --logfile b2/build.log lambda-align_1.0.3-5.dsc' SUDO_GID=117 SUDO_UID=110 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root USERNAME=root _='I: set' http_proxy=http://192.168.101.16:3128 I: uname -a Linux i-capture-the-hostname 4.4.0-190-generic #220-Ubuntu SMP Fri Aug 28 23:03:33 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 18 2019 bash -rwxr-xr-x 3 root root 34808 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 35576 Mar 1 2019 cat -rwxr-xr-x 1 root root 60256 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 56096 Mar 1 2019 chmod -rwxr-xr-x 1 root root 64368 Mar 1 2019 chown -rwxr-xr-x 1 root root 134632 Mar 1 2019 cp -rwxr-xr-x 1 root root 129536 Jan 18 2019 dash -rwxr-xr-x 1 root root 97136 Mar 1 2019 date -rwxr-xr-x 1 root root 76736 Mar 1 2019 dd -rwxr-xr-x 1 root root 93752 Mar 1 2019 df -rwxr-xr-x 1 root root 138848 Mar 1 2019 dir -rwxr-xr-x 1 root root 75984 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 27256 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 23 2020 fusermount -rwxr-xr-x 1 root root 174304 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 6 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 27 2018 hostname -rwxr-xr-x 1 root root 64472 Mar 1 2019 ln -rwxr-xr-x 1 root root 52544 Jul 27 2018 login -rwxr-xr-x 1 root root 138848 Mar 1 2019 ls -rwxr-xr-x 1 root root 108552 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 76840 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 64480 Mar 1 2019 mknod -rwxr-xr-x 1 root root 39736 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 10 2019 more -rwsr-xr-x 1 root root 47112 Jan 10 2019 mount -rwxr-xr-x 1 root root 14344 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 138736 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Mar 1 2019 readlink -rwxr-xr-x 1 root root 68440 Mar 1 2019 rm -rwxr-xr-x 1 root root 39624 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Oct 30 09:25 sh -> bash lrwxrwxrwx 1 root root 4 Oct 21 22:28 sh.distrib -> dash -rwxr-xr-x 1 root root 31384 Mar 1 2019 sleep -rwxr-xr-x 1 root root 72480 Mar 1 2019 stty -rwsr-xr-x 1 root root 59424 Jan 10 2019 su -rwxr-xr-x 1 root root 31416 Mar 1 2019 sync -rwxr-xr-x 1 root root 449416 Apr 24 2019 tar -rwxr-xr-x 1 root root 10560 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 88968 Mar 1 2019 touch -rwxr-xr-x 1 root root 27256 Mar 1 2019 true -rwxr-xr-x 1 root root 14264 Apr 23 2020 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 10 2019 umount -rwxr-xr-x 1 root root 31384 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 138848 Mar 1 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/13173/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on openssl; however: Package openssl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbsd0{a} libbz2-dev{a} libcroco3{a} libcurl4{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgssapi-krb5-2{a} libicu63{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps7{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} lsb-base{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 29.6 MB of archives. After unpacking 119 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 libprocps7 arm64 2:3.3.15-2 [58.0 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 lsb-base all 10.2019051400 [28.4 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 procps arm64 2:3.3.15-2 [245 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 cmake-data all 3.13.4-1 [1476 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 libarchive13 arm64 3.3.3-4+deb10u1 [291 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 libkrb5support0 arm64 1.17-3 [64.7 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 libk5crypto3 arm64 1.17-3 [122 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 libkrb5-3 arm64 1.17-3 [353 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 libgssapi-krb5-2 arm64 1.17-3 [150 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-1+deb10u1 [69.3 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 libsasl2-2 arm64 2.1.27+dfsg-1+deb10u1 [105 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 libldap-2.4-2 arm64 2.4.47+dfsg-3+deb10u2 [216 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 libnghttp2-14 arm64 1.36.0-2+deb10u1 [81.9 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 libpsl5 arm64 0.20.2-2 [53.6 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [55.7 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 libssh2-1 arm64 1.8.0-2.1 [135 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 libcurl4 arm64 7.64.0-4+deb10u1 [312 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 libjsoncpp1 arm64 1.7.4-3 [71.0 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 librhash0 arm64 1.3.8-1 [121 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 libuv1 arm64 1.24.1-1 [105 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 cmake arm64 3.13.4-1 [3046 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 libbz2-dev arm64 1.0.6-9.2~deb10u1 [30.9 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 libseqan2-dev all 2.4.0+dfsg-11 [1220 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 openssl arm64 1.1.1d-0+deb10u3 [823 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1 [210 kB] Fetched 29.6 MB in 2s (13.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_arm64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../04-libpipeline1_1.5.1-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_arm64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../06-libncurses6_6.1+20181013-2+deb10u2_arm64.deb ... Unpacking libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package libprocps7:arm64. Preparing to unpack .../07-libprocps7_2%3a3.3.15-2_arm64.deb ... Unpacking libprocps7:arm64 (2:3.3.15-2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../08-lsb-base_10.2019051400_all.deb ... Unpacking lsb-base (10.2019051400) ... Selecting previously unselected package procps. Preparing to unpack .../09-procps_2%3a3.3.15-2_arm64.deb ... Unpacking procps (2:3.3.15-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../10-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../11-libmagic-mgc_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../12-libmagic1_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../13-file_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../14-gettext-base_0.19.8.1-9_arm64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../15-libsigsegv2_2.12-2_arm64.deb ... Unpacking libsigsegv2:arm64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../16-m4_1.4.18-2_arm64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../17-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../18-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../19-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../20-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package cmake-data. Preparing to unpack .../21-cmake-data_3.13.4-1_all.deb ... Unpacking cmake-data (3.13.4-1) ... Selecting previously unselected package libicu63:arm64. Preparing to unpack .../22-libicu63_63.1-6+deb10u1_arm64.deb ... Unpacking libicu63:arm64 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../23-libxml2_2.9.4+dfsg1-7+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libarchive13:arm64. Preparing to unpack .../24-libarchive13_3.3.3-4+deb10u1_arm64.deb ... Unpacking libarchive13:arm64 (3.3.3-4+deb10u1) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../25-libkeyutils1_1.6-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6-6) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../26-libkrb5support0_1.17-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.17-3) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../27-libk5crypto3_1.17-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.17-3) ... Selecting previously unselected package libssl1.1:arm64. Preparing to unpack .../28-libssl1.1_1.1.1d-0+deb10u3_arm64.deb ... Unpacking libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../29-libkrb5-3_1.17-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.17-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../30-libgssapi-krb5-2_1.17-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.17-3) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../31-libsasl2-modules-db_2.1.27+dfsg-1+deb10u1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg-1+deb10u1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../32-libsasl2-2_2.1.27+dfsg-1+deb10u1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.27+dfsg-1+deb10u1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../33-libldap-common_2.4.47+dfsg-3+deb10u2_all.deb ... Unpacking libldap-common (2.4.47+dfsg-3+deb10u2) ... Selecting previously unselected package libldap-2.4-2:arm64. Preparing to unpack .../34-libldap-2.4-2_2.4.47+dfsg-3+deb10u2_arm64.deb ... Unpacking libldap-2.4-2:arm64 (2.4.47+dfsg-3+deb10u2) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../35-libnghttp2-14_1.36.0-2+deb10u1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.36.0-2+deb10u1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../36-libpsl5_0.20.2-2_arm64.deb ... Unpacking libpsl5:arm64 (0.20.2-2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../37-librtmp1_2.4+20151223.gitfa8646d.1-2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../38-libssh2-1_1.8.0-2.1_arm64.deb ... Unpacking libssh2-1:arm64 (1.8.0-2.1) ... Selecting previously unselected package libcurl4:arm64. Preparing to unpack .../39-libcurl4_7.64.0-4+deb10u1_arm64.deb ... Unpacking libcurl4:arm64 (7.64.0-4+deb10u1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../40-libexpat1_2.2.6-2+deb10u1_arm64.deb ... Unpacking libexpat1:arm64 (2.2.6-2+deb10u1) ... Selecting previously unselected package libjsoncpp1:arm64. Preparing to unpack .../41-libjsoncpp1_1.7.4-3_arm64.deb ... Unpacking libjsoncpp1:arm64 (1.7.4-3) ... Selecting previously unselected package librhash0:arm64. Preparing to unpack .../42-librhash0_1.3.8-1_arm64.deb ... Unpacking librhash0:arm64 (1.3.8-1) ... Selecting previously unselected package libuv1:arm64. Preparing to unpack .../43-libuv1_1.24.1-1_arm64.deb ... Unpacking libuv1:arm64 (1.24.1-1) ... Selecting previously unselected package cmake. Preparing to unpack .../44-cmake_3.13.4-1_arm64.deb ... Unpacking cmake (3.13.4-1) ... Selecting previously unselected package libtool. Preparing to unpack .../45-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../46-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../47-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../48-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../49-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../50-libelf1_0.176-1.1_arm64.deb ... Unpacking libelf1:arm64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../51-dwz_0.12-3_arm64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../52-libglib2.0-0_2.58.3-2+deb10u2_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.58.3-2+deb10u2) ... Selecting previously unselected package libcroco3:arm64. Preparing to unpack .../53-libcroco3_0.6.12-3_arm64.deb ... Unpacking libcroco3:arm64 (0.6.12-3) ... Selecting previously unselected package gettext. Preparing to unpack .../54-gettext_0.19.8.1-9_arm64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../55-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../56-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../57-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package libbz2-dev:arm64. Preparing to unpack .../58-libbz2-dev_1.0.6-9.2~deb10u1_arm64.deb ... Unpacking libbz2-dev:arm64 (1.0.6-9.2~deb10u1) ... Selecting previously unselected package libseqan2-dev. Preparing to unpack .../59-libseqan2-dev_2.4.0+dfsg-11_all.deb ... Unpacking libseqan2-dev (2.4.0+dfsg-11) ... Selecting previously unselected package openssl. Preparing to unpack .../60-openssl_1.1.1d-0+deb10u3_arm64.deb ... Unpacking openssl (1.1.1d-0+deb10u3) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../61-zlib1g-dev_1%3a1.2.11.dfsg-1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.11.dfsg-1) ... Setting up libexpat1:arm64 (2.2.6-2+deb10u1) ... Setting up libpipeline1:arm64 (1.5.1-2) ... Setting up lsb-base (10.2019051400) ... Setting up libkeyutils1:arm64 (1.6-6) ... Setting up libpsl5:arm64 (0.20.2-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:arm64 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Setting up libprocps7:arm64 (2:3.3.15-2) ... Setting up libnghttp2-14:arm64 (1.36.0-2+deb10u1) ... Setting up libmagic1:arm64 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u2) ... Setting up libicu63:arm64 (63.1-6+deb10u1) ... Setting up libkrb5support0:arm64 (1.17-3) ... Setting up libseqan2-dev (2.4.0+dfsg-11) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-1+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:arm64 (1.24.1-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libk5crypto3:arm64 (1.17-3) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-1+deb10u1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up librhash0:arm64 (1.3.8-1) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libssh2-1:arm64 (1.8.0-2.1) ... Setting up cmake-data (3.13.4-1) ... Setting up libkrb5-3:arm64 (1.17-3) ... Setting up openssl (1.1.1d-0+deb10u3) ... Setting up libbsd0:arm64 (0.9.1-2) ... Setting up libelf1:arm64 (0.176-1.1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Setting up libjsoncpp1:arm64 (1.7.4-3) ... Setting up libbz2-dev:arm64 (1.0.6-9.2~deb10u1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up libarchive13:arm64 (3.3.3-4+deb10u1) ... Setting up libldap-2.4-2:arm64 (2.4.47+dfsg-3+deb10u2) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:arm64 (1.17-3) ... Setting up libcroco3:arm64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libcurl4:arm64 (7.64.0-4+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up cmake (3.13.4-1) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --builddirectory=build debian/rules override_dh_auto_clean make[1]: Entering directory '/build/lambda-align-1.0.3' rm -f *.1 dh_auto_clean -- make[1]: Leaving directory '/build/lambda-align-1.0.3' dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build debian/rules build dh build --builddirectory=build dh_update_autotools_config -O--builddirectory=build dh_autoreconf -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/build/lambda-align-1.0.3' dh_auto_configure -- -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=RelWithDebInfo cd build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=RelWithDebInfo .. Compiler Detection -- The CXX compiler identification is GNU 8.3.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done Dependency detection -- These dependencies where found: OPENMP TRUE -fopenmp ZLIB TRUE 1.2.11 BZIP2 TRUE 1.0.6 SEQAN TRUE 2.4.0 -- The requirements where met. Build configuration -- LAMBDA version is: 1.0.2 -- The following options are selected for the build: LAMBDA_FASTBUILD OFF LAMBDA_LINGAPS_OPT OFF LAMBDA_MMAPPED_DB ON LAMBDA_NATIVE_BUILD OFF LAMBDA_STATIC_BUILD OFF -- Run 'cmake -LH' to get a comment on each option. -- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option. -- CMAKE_BUILD_TYPE is not "Release", your binaries will be slow. Setting up unit tests -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/lambda-align-1.0.3/build make[1]: Leaving directory '/build/lambda-align-1.0.3' dh_auto_build -O--builddirectory=build cd build && make -j8 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/lambda-align-1.0.3 -B/build/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/lambda-align-1.0.3/build/CMakeFiles /build/lambda-align-1.0.3/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make[3]: Entering directory '/build/lambda-align-1.0.3/build' make[3]: Entering directory '/build/lambda-align-1.0.3/build' cd /build/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align-1.0.3 /build/lambda-align-1.0.3/src /build/lambda-align-1.0.3/build /build/lambda-align-1.0.3/build/src /build/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake --color= cd /build/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align-1.0.3 /build/lambda-align-1.0.3/src /build/lambda-align-1.0.3/build /build/lambda-align-1.0.3/build/src /build/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake --color= Scanning dependencies of target lambda Scanning dependencies of target lambda_indexer make[3]: Leaving directory '/build/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Leaving directory '/build/lambda-align-1.0.3/build' make[3]: Entering directory '/build/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/lambda-align-1.0.3/build' [ 50%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o [ 50%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o cd /build/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"RelWithDebInfo\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fno-omit-frame-pointer -fopenmp -Wno-vla -flto=8 -O2 -g -DNDEBUG -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/lambda-align-1.0.3/src/lambda_indexer.cpp cd /build/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"RelWithDebInfo\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fno-omit-frame-pointer -fopenmp -Wno-vla -flto=8 -O2 -g -DNDEBUG -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/lambda-align-1.0.3/src/lambda.cpp In file included from /build/lambda-align-1.0.3/src/misc.hpp:34, from /build/lambda-align-1.0.3/src/lambda_indexer.hpp:35, from /build/lambda-align-1.0.3/src/lambda_indexer.cpp:31: /build/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] setDate(parser, __DATE__); ^~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:32: /build/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] setDate(parser, __DATE__); ^~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ /build/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] getcwd(cwd, 1000); ~~~~~~^~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:32: /build/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] getcwd(cwd, 1000); ~~~~~~^~~~~~~~~~~ [ 75%] Linking CXX executable ../bin/lambda_indexer cd /build/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda_indexer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fno-omit-frame-pointer -fopenmp -Wno-vla -flto=8 -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread make[3]: Leaving directory '/build/lambda-align-1.0.3/build' [ 75%] Built target lambda_indexer [100%] Linking CXX executable ../bin/lambda cd /build/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fno-omit-frame-pointer -fopenmp -Wno-vla -flto=8 -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread make[3]: Leaving directory '/build/lambda-align-1.0.3/build' [100%] Built target lambda make[2]: Leaving directory '/build/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/lambda-align-1.0.3/build/CMakeFiles 0 make[1]: Leaving directory '/build/lambda-align-1.0.3/build' debian/rules override_dh_auto_test make[1]: Entering directory '/build/lambda-align-1.0.3' cd build/tests && ctest 8 Test project /build/lambda-align-1.0.3/build/tests Start 1: test_mkindex_blastn_sa 1/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.21 sec Start 2: test_mkindex_blastn_fm 2/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.23 sec Start 3: test_mkindex_blastp_sa 3/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.08 sec Start 4: test_mkindex_blastp_fm 4/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.10 sec Start 5: test_mkindex_blastx_sa 5/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.09 sec Start 6: test_mkindex_blastx_fm 6/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.10 sec Start 7: test_mkindex_tblastn_sa 7/80 Test #7: test_mkindex_tblastn_sa .......... Passed 0.32 sec Start 8: test_mkindex_tblastn_fm 8/80 Test #8: test_mkindex_tblastn_fm .......... Passed 0.43 sec Start 9: test_mkindex_tblastx_sa 9/80 Test #9: test_mkindex_tblastx_sa .......... Passed 0.32 sec Start 10: test_mkindex_tblastx_fm 10/80 Test #10: test_mkindex_tblastx_fm .......... Passed 0.44 sec Start 11: test_search_blastn_sa_m0 11/80 Test #11: test_search_blastn_sa_m0 ......... Passed 3.75 sec Start 12: test_search_blastn_sa_m8 12/80 Test #12: test_search_blastn_sa_m8 ......... Passed 3.33 sec Start 13: test_search_blastn_sa_m9 13/80 Test #13: test_search_blastn_sa_m9 ......... Passed 3.30 sec Start 14: test_search_blastn_sa_sam 14/80 Test #14: test_search_blastn_sa_sam ........ Passed 3.41 sec Start 15: test_search_blastn_sa_bam 15/80 Test #15: test_search_blastn_sa_bam ........ Passed 3.08 sec Start 16: test_search_blastn_sa_m9.gz 16/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 3.29 sec Start 17: test_search_blastn_sa_sam.bz2 17/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 5.03 sec Start 18: test_search_blastn_fm_m0 18/80 Test #18: test_search_blastn_fm_m0 ......... Passed 3.85 sec Start 19: test_search_blastn_fm_m8 19/80 Test #19: test_search_blastn_fm_m8 ......... Passed 3.45 sec Start 20: test_search_blastn_fm_m9 20/80 Test #20: test_search_blastn_fm_m9 ......... Passed 3.56 sec Start 21: test_search_blastn_fm_sam 21/80 Test #21: test_search_blastn_fm_sam ........ Passed 3.46 sec Start 22: test_search_blastn_fm_bam 22/80 Test #22: test_search_blastn_fm_bam ........ Passed 3.23 sec Start 23: test_search_blastn_fm_m9.gz 23/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 3.60 sec Start 24: test_search_blastn_fm_sam.bz2 24/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 5.35 sec Start 25: test_search_blastp_sa_m0 25/80 Test #25: test_search_blastp_sa_m0 ......... Passed 0.42 sec Start 26: test_search_blastp_sa_m8 26/80 Test #26: test_search_blastp_sa_m8 ......... Passed 0.38 sec Start 27: test_search_blastp_sa_m9 27/80 Test #27: test_search_blastp_sa_m9 ......... Passed 0.44 sec Start 28: test_search_blastp_sa_sam 28/80 Test #28: test_search_blastp_sa_sam ........ Passed 0.42 sec Start 29: test_search_blastp_sa_bam 29/80 Test #29: test_search_blastp_sa_bam ........ Passed 0.37 sec Start 30: test_search_blastp_sa_m9.gz 30/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 0.47 sec Start 31: test_search_blastp_sa_sam.bz2 31/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 0.57 sec Start 32: test_search_blastp_fm_m0 32/80 Test #32: test_search_blastp_fm_m0 ......... Passed 0.49 sec Start 33: test_search_blastp_fm_m8 33/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.42 sec Start 34: test_search_blastp_fm_m9 34/80 Test #34: test_search_blastp_fm_m9 ......... Passed 0.39 sec Start 35: test_search_blastp_fm_sam 35/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.39 sec Start 36: test_search_blastp_fm_bam 36/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.38 sec Start 37: test_search_blastp_fm_m9.gz 37/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 0.47 sec Start 38: test_search_blastp_fm_sam.bz2 38/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 0.51 sec Start 39: test_search_blastx_sa_m0 39/80 Test #39: test_search_blastx_sa_m0 ......... Passed 1.87 sec Start 40: test_search_blastx_sa_m8 40/80 Test #40: test_search_blastx_sa_m8 ......... Passed 1.49 sec Start 41: test_search_blastx_sa_m9 41/80 Test #41: test_search_blastx_sa_m9 ......... Passed 1.52 sec Start 42: test_search_blastx_sa_sam 42/80 Test #42: test_search_blastx_sa_sam ........ Passed 1.59 sec Start 43: test_search_blastx_sa_bam 43/80 Test #43: test_search_blastx_sa_bam ........ Passed 1.51 sec Start 44: test_search_blastx_sa_m9.gz 44/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 1.72 sec Start 45: test_search_blastx_sa_sam.bz2 45/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 2.97 sec Start 46: test_search_blastx_fm_m0 46/80 Test #46: test_search_blastx_fm_m0 ......... Passed 1.90 sec Start 47: test_search_blastx_fm_m8 47/80 Test #47: test_search_blastx_fm_m8 ......... Passed 1.73 sec Start 48: test_search_blastx_fm_m9 48/80 Test #48: test_search_blastx_fm_m9 ......... Passed 1.82 sec Start 49: test_search_blastx_fm_sam 49/80 Test #49: test_search_blastx_fm_sam ........ Passed 1.76 sec Start 50: test_search_blastx_fm_bam 50/80 Test #50: test_search_blastx_fm_bam ........ Passed 1.83 sec Start 51: test_search_blastx_fm_m9.gz 51/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 2.36 sec Start 52: test_search_blastx_fm_sam.bz2 52/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 3.39 sec Start 53: test_search_tblastn_sa_m0 53/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 2.37 sec Start 54: test_search_tblastn_sa_m8 54/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 2.18 sec Start 55: test_search_tblastn_sa_m9 55/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 2.10 sec Start 56: test_search_tblastn_sa_sam 56/80 Test #56: test_search_tblastn_sa_sam ....... Passed 2.26 sec Start 57: test_search_tblastn_sa_bam 57/80 Test #57: test_search_tblastn_sa_bam ....... Passed 2.29 sec Start 58: test_search_tblastn_sa_m9.gz 58/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 2.29 sec Start 59: test_search_tblastn_sa_sam.bz2 59/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 3.06 sec Start 60: test_search_tblastn_fm_m0 60/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 1.71 sec Start 61: test_search_tblastn_fm_m8 61/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 1.43 sec Start 62: test_search_tblastn_fm_m9 62/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 1.38 sec Start 63: test_search_tblastn_fm_sam 63/80 Test #63: test_search_tblastn_fm_sam ....... Passed 1.36 sec Start 64: test_search_tblastn_fm_bam 64/80 Test #64: test_search_tblastn_fm_bam ....... Passed 1.30 sec Start 65: test_search_tblastn_fm_m9.gz 65/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 1.58 sec Start 66: test_search_tblastn_fm_sam.bz2 66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 2.18 sec Start 67: test_search_tblastx_sa_m0 67/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 7.56 sec Start 68: test_search_tblastx_sa_m8 68/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 7.08 sec Start 69: test_search_tblastx_sa_m9 69/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 7.67 sec Start 70: test_search_tblastx_sa_sam 70/80 Test #70: test_search_tblastx_sa_sam ....... Passed 8.35 sec Start 71: test_search_tblastx_sa_bam 71/80 Test #71: test_search_tblastx_sa_bam ....... Passed 7.83 sec Start 72: test_search_tblastx_sa_m9.gz 72/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 8.37 sec Start 73: test_search_tblastx_sa_sam.bz2 73/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 14.85 sec Start 74: test_search_tblastx_fm_m0 74/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 8.10 sec Start 75: test_search_tblastx_fm_m8 75/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 7.06 sec Start 76: test_search_tblastx_fm_m9 76/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 6.55 sec Start 77: test_search_tblastx_fm_sam 77/80 Test #77: test_search_tblastx_fm_sam ....... Passed 7.82 sec Start 78: test_search_tblastx_fm_bam 78/80 Test #78: test_search_tblastx_fm_bam ....... Passed 6.84 sec Start 79: test_search_tblastx_fm_m9.gz 79/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 8.21 sec Start 80: test_search_tblastx_fm_sam.bz2 80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 14.69 sec 100% tests passed, 0 tests failed out of 80 Total Test time (real) = 236.12 sec make[1]: Leaving directory '/build/lambda-align-1.0.3' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --builddirectory=build dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build dh_auto_install -O--builddirectory=build cd build && make -j8 install DESTDIR=/build/lambda-align-1.0.3/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/lambda-align-1.0.3 -B/build/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/lambda-align-1.0.3/build/CMakeFiles /build/lambda-align-1.0.3/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make[3]: Entering directory '/build/lambda-align-1.0.3/build' cd /build/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align-1.0.3 /build/lambda-align-1.0.3/src /build/lambda-align-1.0.3/build /build/lambda-align-1.0.3/build/src /build/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/lambda-align-1.0.3/build' cd /build/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align-1.0.3 /build/lambda-align-1.0.3/src /build/lambda-align-1.0.3/build /build/lambda-align-1.0.3/build/src /build/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Leaving directory '/build/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/build/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Leaving directory '/build/lambda-align-1.0.3/build' make[3]: Entering directory '/build/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. make[3]: Leaving directory '/build/lambda-align-1.0.3/build' [ 50%] Built target lambda [100%] Built target lambda_indexer make[2]: Leaving directory '/build/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/lambda-align-1.0.3/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/lambda-align-1.0.3/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/lambda-align-1.0.3/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /build/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda -- Installing: /build/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda_indexer -- Installing: /build/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE.rst -- Installing: /build/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-BSD.rst -- Installing: /build/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-GPL3.rst -- Installing: /build/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/README.rst make[1]: Leaving directory '/build/lambda-align-1.0.3/build' debian/rules override_dh_install make[1]: Entering directory '/build/lambda-align-1.0.3' dh_install find debian -name "LICENSE*.rst" -delete make[1]: Leaving directory '/build/lambda-align-1.0.3' dh_installdocs -O--builddirectory=build dh_installchangelogs -O--builddirectory=build debian/rules override_dh_installman make[1]: Entering directory '/build/lambda-align-1.0.3' ./build/bin/lambda --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda.1 mkdir: cannot create directory '/nonexistent': Permission denied ./build/bin/lambda_indexer --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/(defaults to working directory.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda_indexer.1 mkdir: cannot create directory '/nonexistent': Permission denied dh_installman -- make[1]: Leaving directory '/build/lambda-align-1.0.3' dh_installinit -O--builddirectory=build dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build dh_link -O--builddirectory=build dh_strip_nondeterminism -O--builddirectory=build dh_compress -O--builddirectory=build dh_fixperms -O--builddirectory=build dh_missing -O--builddirectory=build dh_dwz -O--builddirectory=build dh_strip -O--builddirectory=build dh_makeshlibs -O--builddirectory=build dh_shlibdeps -O--builddirectory=build dh_installdeb -O--builddirectory=build dh_gencontrol -O--builddirectory=build dh_md5sums -O--builddirectory=build dh_builddeb -O--builddirectory=build dpkg-deb: building package 'lambda-align' in '../lambda-align_1.0.3-5_arm64.deb'. dpkg-deb: building package 'lambda-align-dbgsym' in '../lambda-align-dbgsym_1.0.3-5_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../lambda-align_1.0.3-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/13173/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/13173/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/13173 and its subdirectories I: Current time: Fri Oct 30 09:38:09 +14 2020 I: pbuilder-time-stamp: 1604000289