I: pbuilder: network access will be disabled during build I: Current time: Mon Aug 23 02:54:18 -12 2021 I: pbuilder-time-stamp: 1629730458 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cdk_1.2.10-7.dsc] I: copying [./cdk_1.2.10.orig.tar.gz] I: copying [./cdk_1.2.10-7.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Mar 30 08:57:00 2018 -12 gpgv: using RSA key B8CE4DE21080DCF903E16C40F513C419E4B9D0AC gpgv: issuer "ebourg@apache.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./cdk_1.2.10-7.dsc dpkg-source: info: extracting cdk in cdk-1.2.10 dpkg-source: info: unpacking cdk_1.2.10.orig.tar.gz dpkg-source: info: unpacking cdk_1.2.10-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 22_fix_build.patch dpkg-source: info: applying ant19.patch dpkg-source: info: applying jama-1.0.3.patch dpkg-source: info: applying java8-compatibility.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/25705/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='25705' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.opj6yQv94E/pbuilderrc_89sr --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.opj6yQv94E/b1 --logfile b1/build.log cdk_1.2.10-7.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink-sled13-arm64 4.4.0-185-generic #215-Ubuntu SMP Mon Jun 8 21:55:24 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 22 02:49 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/25705/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: ant-contrib, ant-optional, antlr, debhelper (>= 11), default-jdk, docbook-xsl (>= 1.66.1), javacc, javahelper, libjama-java (>= 1.0.3), libjgrapht0.6-java, liblog4j1.2-java, libvecmath-java, libxerces2-java, libxom-java, libxpp3-java, r-cran-rjava dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on ant-contrib; however: Package ant-contrib is not installed. pbuilder-satisfydepends-dummy depends on ant-optional; however: Package ant-optional is not installed. pbuilder-satisfydepends-dummy depends on antlr; however: Package antlr is not installed. pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on docbook-xsl (>= 1.66.1); however: Package docbook-xsl is not installed. pbuilder-satisfydepends-dummy depends on javacc; however: Package javacc is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on libjama-java (>= 1.0.3); however: Package libjama-java is not installed. pbuilder-satisfydepends-dummy depends on libjgrapht0.6-java; however: Package libjgrapht0.6-java is not installed. pbuilder-satisfydepends-dummy depends on liblog4j1.2-java; however: Package liblog4j1.2-java is not installed. pbuilder-satisfydepends-dummy depends on libvecmath-java; however: Package libvecmath-java is not installed. pbuilder-satisfydepends-dummy depends on libxerces2-java; however: Package libxerces2-java is not installed. pbuilder-satisfydepends-dummy depends on libxom-java; however: Package libxom-java is not installed. pbuilder-satisfydepends-dummy depends on libxpp3-java; however: Package libxpp3-java is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rjava; however: Package r-cran-rjava is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: ant{a} ant-contrib{a} ant-optional{a} antlr{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} ca-certificates-java{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} docbook-xsl{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gnupg-utils{a} gpg{a} gpg-agent{a} gpg-wks-client{a} gpg-wks-server{a} gpgconf{a} gpgsm{a} groff-base{a} intltool-debian{a} java-common{a} javacc{a} javahelper{a} junit{a} libantlr-java{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libassuan0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libb-hooks-op-check-perl{a} libblas3{a} libbsd0{a} libcairo2{a} libclass-method-modifiers-perl{a} libcroco3{a} libcups2{a} libcurl4{a} libdatrie1{a} libdbus-1-3{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-etnaviv1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libelf1{a} libencode-locale-perl{a} libexpat1{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libice6{a} libicu63{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libjama-java{a} libjaxen-java{a} libjbig0{a} libjgraph-java{a} libjgrapht0.6-java{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libksba8{a} liblapack3{a} liblcms2-2{a} libldap-2.4-2{a} libldap-common{a} libllvm7{a} liblog4j1.2-java{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libmodule-runtime-perl{a} libmoo-perl{a} libmpdec2{a} libncurses6{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libnpth0{a} libnspr4{a} libnss3{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} librole-tiny-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libssl1.1{a} libstrictures-perl{a} libsub-exporter-progressive-perl{a} libsub-quote-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvecmath-java{a} libwebp6{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxft2{a} libxi6{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxom-java{a} libxpp3-java{a} libxrender1{a} libxshmfence1{a} libxss1{a} libxt6{a} libxtst6{a} libxxf86vm1{a} lsb-base{a} m4{a} man-db{a} mime-support{a} netbase{a} openjdk-11-jdk{a} openjdk-11-jdk-headless{a} openjdk-11-jre{a} openjdk-11-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-minimal{a} python3.7{a} python3.7-minimal{a} r-base-core{a} r-cran-rjava{a} readline-common{a} sensible-utils{a} sgml-base{a} ucf{a} unzip{a} wdiff{a} x11-common{a} xdg-utils{a} xml-core{a} zip{a} The following packages are RECOMMENDED but will NOT be installed: at curl dbus debian-keyring docbook-xml dput dput-ng dupload equivs fonts-dejavu-extra krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libclass-xsaccessor-perl libdata-dump-perl libdistro-info-perl libfile-mimeinfo-perl libgit-wrapper-perl libgitlab-api-v4-perl libglib2.0-data libgpm2 libhtml-form-perl libhtml-format-perl libhttp-daemon-perl liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnet-dbus-perl libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libsub-name-perl libx11-protocol-perl libxt-dev licensecheck lintian lynx publicsuffix python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg r-base-dev r-doc-html r-recommended shared-mime-info strace wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 241 newly installed, 0 to remove and 0 not upgraded. Need to get 346 MB of archives. After unpacking 870 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 libpython3.7-minimal arm64 3.7.3-2+deb10u1 [588 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 python3.7-minimal arm64 3.7.3-2+deb10u1 [1404 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 python3-minimal arm64 3.7.3-1 [36.6 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libmpdec2 arm64 2.4.2-2 [77.7 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 libreadline7 arm64 7.0-5 [134 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libpython3.7-stdlib arm64 3.7.3-2+deb10u1 [1640 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 python3.7 arm64 3.7.3-2+deb10u1 [330 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libpython3-stdlib arm64 3.7.3-1 [20.0 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 python3 arm64 3.7.3-1 [61.5 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 sgml-base all 1.29 [14.8 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 netbase all 5.6 [19.4 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 ucf all 3.0038+nmu1 [69.0 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 openssl arm64 1.1.1d-0+deb10u3 [823 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 ca-certificates all 20190110 [157 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 libnspr4 arm64 2:4.20-1 [105 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 libnss3 arm64 2:3.42.1-1+deb10u2 [1082 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 ca-certificates-java all 20190405 [15.7 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 java-common all 0.71 [14.4 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 libavahi-common-data arm64 0.7-4+b1 [122 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 libavahi-common3 arm64 0.7-4+b1 [53.5 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 libdbus-1-3 arm64 1.12.16-1 [204 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 libavahi-client3 arm64 0.7-4+b1 [56.8 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 libkrb5support0 arm64 1.17-3 [64.7 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 libk5crypto3 arm64 1.17-3 [122 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 libkrb5-3 arm64 1.17-3 [353 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 libgssapi-krb5-2 arm64 1.17-3 [150 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 libcups2 arm64 2.2.10-6+deb10u3 [310 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 liblcms2-2 arm64 2.9-3 [137 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 libjpeg62-turbo arm64 1:1.5.2-2+b1 [115 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 libpng16-16 arm64 1.6.36-6 [287 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 libfreetype6 arm64 2.9.1-3+deb10u1 [355 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 fontconfig-config all 2.13.1-2 [280 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 libfontconfig1 arm64 2.13.1-2 [343 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 libasound2-data all 1.1.8-1 [59.6 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 libasound2 arm64 1.1.8-1 [333 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 libpcsclite1 arm64 1.8.24-1 [58.1 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 libxau6 arm64 1:1.0.8-1+b2 [19.3 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 libxcb1 arm64 1.13.1-2 [135 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 libx11-data all 2:1.6.7-1 [298 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 libx11-6 arm64 2:1.6.7-1 [735 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 libxext6 arm64 2:1.3.3-1+b2 [48.6 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 libxi6 arm64 2:1.7.9-1 [79.0 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 lsb-base all 10.2019051400 [28.4 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 x11-common all 1:7.7+19 [251 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 libxtst6 arm64 2:1.2.3-1 [26.7 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 openjdk-11-jre-headless arm64 11.0.6+10-1~deb10u1 [36.4 MB] Get: 66 http://deb.debian.org/debian buster/main arm64 default-jre-headless arm64 2:1.11-71 [10.9 kB] Get: 67 http://deb.debian.org/debian buster/main arm64 ant all 1.10.5-2 [2082 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 ant-contrib all 1.0~b3+svn177-10 [262 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 ant-optional all 1.10.5-2 [379 kB] Get: 70 http://deb.debian.org/debian buster/main arm64 libantlr-java all 2.7.7+dfsg-9.2 [459 kB] Get: 71 http://deb.debian.org/debian buster/main arm64 antlr all 2.7.7+dfsg-9.2 [13.9 kB] Get: 72 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 73 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 74 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 75 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 76 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 77 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 78 http://deb.debian.org/debian buster/main arm64 dctrl-tools arm64 2.24-3 [101 kB] Get: 79 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 80 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 81 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 82 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 83 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 84 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 85 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 86 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 87 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 88 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 89 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 90 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 91 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 92 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 93 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 94 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 95 http://deb.debian.org/debian buster/main arm64 libglvnd0 arm64 1.1.0-1 [42.4 kB] Get: 96 http://deb.debian.org/debian buster/main arm64 libdrm-common all 2.4.97-1 [13.8 kB] Get: 97 http://deb.debian.org/debian buster/main arm64 libdrm2 arm64 2.4.97-1 [39.5 kB] Get: 98 http://deb.debian.org/debian buster/main arm64 libglapi-mesa arm64 18.3.6-2+deb10u1 [74.8 kB] Get: 99 http://deb.debian.org/debian buster/main arm64 libx11-xcb1 arm64 2:1.6.7-1 [190 kB] Get: 100 http://deb.debian.org/debian buster/main arm64 libxcb-dri2-0 arm64 1.13.1-2 [101 kB] Get: 101 http://deb.debian.org/debian buster/main arm64 libxcb-dri3-0 arm64 1.13.1-2 [100 kB] Get: 102 http://deb.debian.org/debian buster/main arm64 libxcb-glx0 arm64 1.13.1-2 [116 kB] Get: 103 http://deb.debian.org/debian buster/main arm64 libxcb-present0 arm64 1.13.1-2 [99.1 kB] Get: 104 http://deb.debian.org/debian buster/main arm64 libxcb-sync1 arm64 1.13.1-2 [102 kB] Get: 105 http://deb.debian.org/debian buster/main arm64 libxfixes3 arm64 1:5.0.3-1 [21.0 kB] Get: 106 http://deb.debian.org/debian buster/main arm64 libxdamage1 arm64 1:1.1.4-3+b3 [14.8 kB] Get: 107 http://deb.debian.org/debian buster/main arm64 libxshmfence1 arm64 1.3-1 [8712 B] Get: 108 http://deb.debian.org/debian buster/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b2 [20.1 kB] Get: 109 http://deb.debian.org/debian buster/main arm64 libdrm-amdgpu1 arm64 2.4.97-1 [26.6 kB] Get: 110 http://deb.debian.org/debian buster/main arm64 libdrm-etnaviv1 arm64 2.4.97-1 [21.0 kB] Get: 111 http://deb.debian.org/debian buster/main arm64 libdrm-nouveau2 arm64 2.4.97-1 [25.5 kB] Get: 112 http://deb.debian.org/debian buster/main arm64 libdrm-radeon1 arm64 2.4.97-1 [30.0 kB] Get: 113 http://deb.debian.org/debian buster/main arm64 libedit2 arm64 3.1-20181209-1 [91.2 kB] Get: 114 http://deb.debian.org/debian buster/main arm64 libllvm7 arm64 1:7.0.1-8 [10.8 MB] Get: 115 http://deb.debian.org/debian buster/main arm64 libsensors-config all 1:3.5.0-3 [31.6 kB] Get: 116 http://deb.debian.org/debian buster/main arm64 libsensors5 arm64 1:3.5.0-3 [51.8 kB] Get: 117 http://deb.debian.org/debian buster/main arm64 libgl1-mesa-dri arm64 18.3.6-2+deb10u1 [4910 kB] Get: 118 http://deb.debian.org/debian buster/main arm64 libglx-mesa0 arm64 18.3.6-2+deb10u1 [180 kB] Get: 119 http://deb.debian.org/debian buster/main arm64 libglx0 arm64 1.1.0-1 [29.0 kB] Get: 120 http://deb.debian.org/debian buster/main arm64 libgl1 arm64 1.1.0-1 [92.5 kB] Get: 121 http://deb.debian.org/debian buster/main arm64 libgif7 arm64 5.1.4-3 [41.7 kB] Get: 122 http://deb.debian.org/debian buster/main arm64 openjdk-11-jre arm64 11.0.6+10-1~deb10u1 [32.8 kB] Get: 123 http://deb.debian.org/debian buster/main arm64 default-jre arm64 2:1.11-71 [1044 B] Get: 124 http://deb.debian.org/debian buster/main arm64 openjdk-11-jdk-headless arm64 11.0.6+10-1~deb10u1 [205 MB] Get: 125 http://deb.debian.org/debian buster/main arm64 default-jdk-headless arm64 2:1.11-71 [1104 B] Get: 126 http://deb.debian.org/debian buster/main arm64 openjdk-11-jdk arm64 11.0.6+10-1~deb10u1 [2182 kB] Get: 127 http://deb.debian.org/debian buster/main arm64 default-jdk arm64 2:1.11-71 [1056 B] Get: 128 http://deb.debian.org/debian buster/main arm64 libassuan0 arm64 2.5.2-1 [47.1 kB] Get: 129 http://deb.debian.org/debian buster/main arm64 gpgconf arm64 2.2.12-1+deb10u1 [503 kB] Get: 130 http://deb.debian.org/debian buster/main arm64 libksba8 arm64 1.3.5-2 [84.7 kB] Get: 131 http://deb.debian.org/debian buster/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-1+deb10u1 [69.3 kB] Get: 132 http://deb.debian.org/debian buster/main arm64 libsasl2-2 arm64 2.1.27+dfsg-1+deb10u1 [105 kB] Get: 133 http://deb.debian.org/debian buster/main arm64 libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 134 http://deb.debian.org/debian buster/main arm64 libldap-2.4-2 arm64 2.4.47+dfsg-3+deb10u2 [216 kB] Get: 135 http://deb.debian.org/debian buster/main arm64 libnpth0 arm64 1.6-1 [17.6 kB] Get: 136 http://deb.debian.org/debian buster/main arm64 dirmngr arm64 2.2.12-1+deb10u1 [694 kB] Get: 137 http://deb.debian.org/debian buster/main arm64 gnupg-l10n all 2.2.12-1+deb10u1 [1010 kB] Get: 138 http://deb.debian.org/debian buster/main arm64 gnupg-utils arm64 2.2.12-1+deb10u1 [824 kB] Get: 139 http://deb.debian.org/debian buster/main arm64 gpg arm64 2.2.12-1+deb10u1 [827 kB] Get: 140 http://deb.debian.org/debian buster/main arm64 pinentry-curses arm64 1.1.0-2 [62.7 kB] Get: 141 http://deb.debian.org/debian buster/main arm64 gpg-agent arm64 2.2.12-1+deb10u1 [601 kB] Get: 142 http://deb.debian.org/debian buster/main arm64 gpg-wks-client arm64 2.2.12-1+deb10u1 [478 kB] Get: 143 http://deb.debian.org/debian buster/main arm64 gpg-wks-server arm64 2.2.12-1+deb10u1 [472 kB] Get: 144 http://deb.debian.org/debian buster/main arm64 gpgsm arm64 2.2.12-1+deb10u1 [587 kB] Get: 145 http://deb.debian.org/debian buster/main arm64 gnupg all 2.2.12-1+deb10u1 [715 kB] Get: 146 http://deb.debian.org/debian buster/main arm64 libfile-which-perl all 1.23-1 [16.6 kB] Get: 147 http://deb.debian.org/debian buster/main arm64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get: 148 http://deb.debian.org/debian buster/main arm64 libio-pty-perl arm64 1:1.08-1.1+b5 [32.8 kB] Get: 149 http://deb.debian.org/debian buster/main arm64 libipc-run-perl all 20180523.0-1 [101 kB] Get: 150 http://deb.debian.org/debian buster/main arm64 libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get: 151 http://deb.debian.org/debian buster/main arm64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get: 152 http://deb.debian.org/debian buster/main arm64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get: 153 http://deb.debian.org/debian buster/main arm64 libb-hooks-op-check-perl arm64 0.22-1+b1 [11.4 kB] Get: 154 http://deb.debian.org/debian buster/main arm64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get: 155 http://deb.debian.org/debian buster/main arm64 libdevel-callchecker-perl arm64 0.008-1 [15.6 kB] Get: 156 http://deb.debian.org/debian buster/main arm64 libparams-classify-perl arm64 0.015-1+b1 [25.4 kB] Get: 157 http://deb.debian.org/debian buster/main arm64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get: 158 http://deb.debian.org/debian buster/main arm64 libimport-into-perl all 1.002005-1 [11.6 kB] Get: 159 http://deb.debian.org/debian buster/main arm64 librole-tiny-perl all 2.000006-1 [19.4 kB] Get: 160 http://deb.debian.org/debian buster/main arm64 libstrictures-perl all 2.000005-1 [18.3 kB] Get: 161 http://deb.debian.org/debian buster/main arm64 libsub-quote-perl all 2.005001-1 [17.9 kB] Get: 162 http://deb.debian.org/debian buster/main arm64 libmoo-perl all 2.003004-2 [57.4 kB] Get: 163 http://deb.debian.org/debian buster/main arm64 libencode-locale-perl all 1.05-1 [13.7 kB] Get: 164 http://deb.debian.org/debian buster/main arm64 libtimedate-perl all 2.3000-2+deb10u1 [38.1 kB] Get: 165 http://deb.debian.org/debian buster/main arm64 libhttp-date-perl all 6.02-1 [10.7 kB] Get: 166 http://deb.debian.org/debian buster/main arm64 libfile-listing-perl all 6.04-1 [10.3 kB] Get: 167 http://deb.debian.org/debian buster/main arm64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get: 168 http://deb.debian.org/debian buster/main arm64 liburi-perl all 1.76-1 [89.9 kB] Get: 169 http://deb.debian.org/debian buster/main arm64 libhtml-parser-perl arm64 3.72-3+b3 [103 kB] Get: 170 http://deb.debian.org/debian buster/main arm64 libhtml-tree-perl all 5.07-2 [213 kB] Get: 171 http://deb.debian.org/debian buster/main arm64 libio-html-perl all 1.001-1 [17.6 kB] Get: 172 http://deb.debian.org/debian buster/main arm64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get: 173 http://deb.debian.org/debian buster/main arm64 libhttp-message-perl all 6.18-1 [77.8 kB] Get: 174 http://deb.debian.org/debian buster/main arm64 libhttp-cookies-perl all 6.04-1 [17.8 kB] Get: 175 http://deb.debian.org/debian buster/main arm64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get: 176 http://deb.debian.org/debian buster/main arm64 perl-openssl-defaults arm64 3 [6782 B] Get: 177 http://deb.debian.org/debian buster/main arm64 libnet-ssleay-perl arm64 1.85-2+b1 [303 kB] Get: 178 http://deb.debian.org/debian buster/main arm64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get: 179 http://deb.debian.org/debian buster/main arm64 libnet-http-perl all 6.18-1 [24.5 kB] Get: 180 http://deb.debian.org/debian buster/main arm64 liblwp-protocol-https-perl all 6.07-2 [9242 B] Get: 181 http://deb.debian.org/debian buster/main arm64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get: 182 http://deb.debian.org/debian buster/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 183 http://deb.debian.org/debian buster/main arm64 libwww-perl all 6.36-2 [188 kB] Get: 184 http://deb.debian.org/debian buster/main arm64 patchutils arm64 0.3.4-2 [84.7 kB] Get: 185 http://deb.debian.org/debian buster/main arm64 wdiff arm64 1.2.2-2+b1 [121 kB] Get: 186 http://deb.debian.org/debian buster/main arm64 devscripts arm64 2.19.5+deb10u1 [1045 kB] Get: 187 http://deb.debian.org/debian buster/main arm64 xml-core all 0.18+nmu1 [23.8 kB] Get: 188 http://deb.debian.org/debian buster/main arm64 docbook-xsl all 1.79.1+dfsg-2 [1249 kB] Get: 189 http://deb.debian.org/debian buster/main arm64 fontconfig arm64 2.13.1-2 [405 kB] Get: 190 http://deb.debian.org/debian buster/main arm64 junit all 3.8.2-9 [110 kB] Get: 191 http://deb.debian.org/debian buster/main arm64 javacc all 5.0-8 [280 kB] Get: 192 http://deb.debian.org/debian buster/main arm64 javahelper all 0.72.9 [96.4 kB] Get: 193 http://deb.debian.org/debian buster/main arm64 libgfortran5 arm64 8.3.0-6 [298 kB] Get: 194 http://deb.debian.org/debian buster/main arm64 libblas3 arm64 3.8.0-2 [100 kB] Get: 195 http://deb.debian.org/debian buster/main arm64 libpixman-1-0 arm64 0.36.0-1 [436 kB] Get: 196 http://deb.debian.org/debian buster/main arm64 libxcb-render0 arm64 1.13.1-2 [108 kB] Get: 197 http://deb.debian.org/debian buster/main arm64 libxcb-shm0 arm64 1.13.1-2 [99.3 kB] Get: 198 http://deb.debian.org/debian buster/main arm64 libcairo2 arm64 1.16.0-4 [644 kB] Get: 199 http://deb.debian.org/debian buster/main arm64 libnghttp2-14 arm64 1.36.0-2+deb10u1 [81.9 kB] Get: 200 http://deb.debian.org/debian buster/main arm64 libpsl5 arm64 0.20.2-2 [53.6 kB] Get: 201 http://deb.debian.org/debian buster/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [55.7 kB] Get: 202 http://deb.debian.org/debian buster/main arm64 libssh2-1 arm64 1.8.0-2.1 [135 kB] Get: 203 http://deb.debian.org/debian buster/main arm64 libcurl4 arm64 7.64.0-4+deb10u1 [312 kB] Get: 204 http://deb.debian.org/debian buster/main arm64 libdatrie1 arm64 0.2.12-2 [38.6 kB] Get: 205 http://deb.debian.org/debian buster/main arm64 libfribidi0 arm64 1.0.5-3.1+deb10u1 [63.6 kB] Get: 206 http://deb.debian.org/debian buster/main arm64 libgraphite2-3 arm64 1.3.13-7 [75.8 kB] Get: 207 http://deb.debian.org/debian buster/main arm64 libharfbuzz0b arm64 2.3.1-1 [1155 kB] Get: 208 http://deb.debian.org/debian buster/main arm64 libice6 arm64 2:1.0.9-2 [52.0 kB] Get: 209 http://deb.debian.org/debian buster/main arm64 libjama-java all 1.0.3-1 [31.4 kB] Get: 210 http://deb.debian.org/debian buster/main arm64 libjaxen-java all 1.1.6-4 [214 kB] Get: 211 http://deb.debian.org/debian buster/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get: 212 http://deb.debian.org/debian buster/main arm64 libjgraph-java all 5.12.4.2+dfsg-5 [205 kB] Get: 213 http://deb.debian.org/debian buster/main arm64 libjgrapht0.6-java all 0.6.0-11 [81.0 kB] Get: 214 http://deb.debian.org/debian buster/main arm64 liblapack3 arm64 3.8.0-2 [1489 kB] Get: 215 http://deb.debian.org/debian buster/main arm64 liblog4j1.2-java all 1.2.17-8 [430 kB] Get: 216 http://deb.debian.org/debian buster/main arm64 libthai-data all 0.1.28-2 [170 kB] Get: 217 http://deb.debian.org/debian buster/main arm64 libthai0 arm64 0.1.28-2 [52.8 kB] Get: 218 http://deb.debian.org/debian buster/main arm64 libpango-1.0-0 arm64 1.42.4-8~deb10u1 [179 kB] Get: 219 http://deb.debian.org/debian buster/main arm64 libpangoft2-1.0-0 arm64 1.42.4-8~deb10u1 [65.7 kB] Get: 220 http://deb.debian.org/debian buster/main arm64 libpangocairo-1.0-0 arm64 1.42.4-8~deb10u1 [54.0 kB] Get: 221 http://deb.debian.org/debian buster/main arm64 libpaper1 arm64 1.1.28 [21.1 kB] Get: 222 http://deb.debian.org/debian buster/main arm64 libpaper-utils arm64 1.1.28 [18.0 kB] Get: 223 http://deb.debian.org/debian buster/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get: 224 http://deb.debian.org/debian buster/main arm64 libtcl8.6 arm64 8.6.9+dfsg-2 [950 kB] Get: 225 http://deb.debian.org/debian buster/main arm64 libwebp6 arm64 0.6.1-2 [233 kB] Get: 226 http://deb.debian.org/debian buster/main arm64 libtiff5 arm64 4.1.0+git191117-2~deb10u1 [259 kB] Get: 227 http://deb.debian.org/debian buster/main arm64 libxft2 arm64 2.3.2-2 [51.3 kB] Get: 228 http://deb.debian.org/debian buster/main arm64 libxss1 arm64 1:1.2.3-1 [17.8 kB] Get: 229 http://deb.debian.org/debian buster/main arm64 libtk8.6 arm64 8.6.9-2 [728 kB] Get: 230 http://deb.debian.org/debian buster/main arm64 libvecmath-java all 1.5.2-7 [97.0 kB] Get: 231 http://deb.debian.org/debian buster/main arm64 libxml-commons-external-java all 1.4.01-3 [240 kB] Get: 232 http://deb.debian.org/debian buster/main arm64 libxml-commons-resolver1.1-java all 1.2-9 [91.6 kB] Get: 233 http://deb.debian.org/debian buster/main arm64 libxerces2-java all 2.12.0-1 [1440 kB] Get: 234 http://deb.debian.org/debian buster/main arm64 libxom-java all 1.2.10-1 [170 kB] Get: 235 http://deb.debian.org/debian buster/main arm64 libxpp3-java all 1.1.4c-3 [292 kB] Get: 236 http://deb.debian.org/debian buster/main arm64 libxt6 arm64 1:1.1.5-1+b3 [175 kB] Get: 237 http://deb.debian.org/debian buster/main arm64 zip arm64 3.0-11+b1 [225 kB] Get: 238 http://deb.debian.org/debian buster/main arm64 unzip arm64 6.0-23+deb10u1 [166 kB] Get: 239 http://deb.debian.org/debian buster/main arm64 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get: 240 http://deb.debian.org/debian buster/main arm64 r-base-core arm64 3.5.2-1 [23.8 MB] Get: 241 http://deb.debian.org/debian buster/main arm64 r-cran-rjava arm64 0.9-10-2+b1 [662 kB] Fetched 346 MB in 52s (6694 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../1-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../2-libuchardet0_0.0.6-3_arm64.deb ... 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Setting up liblcms2-2:arm64 (2.9-3) ... Setting up libpixman-1-0:arm64 (0.36.0-1) ... Setting up wdiff (1.2.2-2+b1) ... Setting up lsb-base (10.2019051400) ... Setting up libx11-xcb1:arm64 (2:1.6.7-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libxau6:arm64 (1:1.0.8-1+b2) ... Setting up libkeyutils1:arm64 (1.6-6) ... Setting up libpsl5:arm64 (0.20.2-2) ... Setting up mime-support (3.62) ... Setting up java-common (0.71) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libdatrie1:arm64 (0.2.12-2) ... Setting up libclass-method-modifiers-perl (2.12-1) ... Setting up libio-pty-perl (1:1.08-1.1+b5) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libvecmath-java (1.5.2-7) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:arm64 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libglvnd0:arm64 (1.1.0-1) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up unzip (6.0-23+deb10u1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.30-1) ... Setting up libsensors-config (1:3.5.0-3) ... Setting up libnghttp2-14:arm64 (1.36.0-2+deb10u1) ... Setting up libmagic1:arm64 (1:5.35-4+deb10u1) ... Setting up perl-openssl-defaults:arm64 (3) ... Setting up liblog4j1.2-java (1.2.17-8) ... Setting up libjama-java (1.0.3-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libencode-locale-perl (1.05-1) ... Setting up libnpth0:arm64 (1.6-1) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libassuan0:arm64 (2.5.2-1) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u2) ... Setting up libjbig0:arm64 (2.1-3.1+b2) ... Setting up libicu63:arm64 (63.1-6+deb10u1) ... Setting up libkrb5support0:arm64 (1.17-3) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-1+deb10u1) ... Setting up libasound2-data (1.1.8-1) ... Setting up patchutils (0.3.4-2) ... Setting up zip (3.0-11+b1) ... Setting up autotools-dev (20180224.1) ... Setting up libjpeg62-turbo:arm64 (1:1.5.2-2+b1) ... Setting up junit (3.8.2-9) ... Setting up libjaxen-java (1.1.6-4) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libnspr4:arm64 (2:4.20-1) ... Setting up gnupg-l10n (2.2.12-1+deb10u1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libavahi-common-data:arm64 (0.7-4+b1) ... Setting up libxpp3-java (1.1.4c-3) ... Setting up libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Setting up libdbus-1-3:arm64 (1.12.16-1) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up libfribidi0:arm64 (1.0.5-3.1+deb10u1) ... Setting up libpng16-16:arm64 (1.6.36-6) ... Setting up libxml-commons-resolver1.1-java (1.2-9) ... Setting up libio-html-perl (1.001-1) ... Setting up libtcl8.6:arm64 (8.6.9+dfsg-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:arm64 (0.6.1-2) ... Setting up libb-hooks-op-check-perl (0.22-1+b1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libpcsclite1:arm64 (1.8.24-1) ... Setting up libsensors5:arm64 (1:3.5.0-3) ... Setting up libk5crypto3:arm64 (1.17-3) ... Setting up libjgraph-java (5.12.4.2+dfsg-5) ... Setting up libglapi-mesa:arm64 (18.3.6-2+deb10u1) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-1+deb10u1) ... Setting up libgfortran5:arm64 (8.3.0-6) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libtimedate-perl (2.3000-2+deb10u1) ... Setting up libgif7:arm64 (5.1.4-3) ... Setting up sensible-utils (0.0.12) ... Setting up libxshmfence1:arm64 (1.3-1) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up libxml-commons-external-java (1.4.01-3) ... Setting up libasound2:arm64 (1.1.8-1) ... Setting up librole-tiny-perl (2.000006-1) ... Setting up libthai-data (0.1.28-2) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up libssh2-1:arm64 (1.8.0-2.1) ... Setting up netbase (5.6) ... Setting up sgml-base (1.29) ... Setting up libstrictures-perl (2.000005-1) ... Setting up libsub-quote-perl (2.005001-1) ... Setting up libkrb5-3:arm64 (1.17-3) ... Setting up libtiff5:arm64 (4.1.0+git191117-2~deb10u1) ... Setting up libmpdec2:arm64 (2.4.2-2) ... Setting up libxerces2-java (2.12.0-1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libantlr-java (2.7.7+dfsg-9.2) ... Setting up openssl (1.1.1d-0+deb10u3) ... Setting up libbsd0:arm64 (0.9.1-2) ... Setting up libdrm-common (2.4.97-1) ... Setting up libelf1:arm64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Setting up xdg-utils (1.1.3-1+deb10u1) ... Setting up liburi-perl (1.76-1) ... Setting up libjgrapht0.6-java (0.6.0-11) ... Setting up dctrl-tools (2.24-3) ... Setting up libreadline7:arm64 (7.0-5) ... Setting up gnupg-utils (2.2.12-1+deb10u1) ... Setting up libnet-ssleay-perl (1.85-2+b1) ... Setting up pinentry-curses (1.1.0-2) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libice6:arm64 (2:1.0.9-2) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up libpython3.7-stdlib:arm64 (3.7.3-2+deb10u1) ... Setting up libxcb1:arm64 (1.13.1-2) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libtool (2.4.6-9) ... Setting up libxcb-render0:arm64 (1.13.1-2) ... Setting up libxcb-glx0:arm64 (1.13.1-2) ... Setting up libedit2:arm64 (3.1-20181209-1) ... Setting up libavahi-common3:arm64 (0.7-4+b1) ... Setting up libldap-2.4-2:arm64 (2.4.47+dfsg-3+deb10u2) ... Setting up libnet-http-perl (6.18-1) ... Setting up m4 (1.4.18-2) ... Setting up libnss3:arm64 (2:3.42.1-1+deb10u2) ... Setting up libxcb-shm0:arm64 (1.13.1-2) ... Setting up libxom-java (1.2.10-1) ... Setting up libdevel-callchecker-perl (0.008-1) ... Setting up libxcb-present0:arm64 (1.13.1-2) ... Setting up libthai0:arm64 (0.1.28-2) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up libblas3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libfreetype6:arm64 (2.9.1-3+deb10u1) ... Setting up libxcb-sync1:arm64 (1.13.1-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:arm64 (1.17-3) ... Setting up libcroco3:arm64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up libxcb-dri2-0:arm64 (1.13.1-2) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libdrm2:arm64 (2.4.97-1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up xml-core (0.18+nmu1) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up gpgconf (2.2.12-1+deb10u1) ... Setting up libcurl4:arm64 (7.64.0-4+deb10u1) ... Setting up libllvm7:arm64 (1:7.0.1-8) ... Setting up libx11-6:arm64 (2:1.6.7-1) ... Setting up libharfbuzz0b:arm64 (2.3.1-1) ... Setting up libsm6:arm64 (2:1.2.3-1) ... Setting up libavahi-client3:arm64 (0.7-4+b1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up gpg (2.2.12-1+deb10u1) ... Setting up libpython3-stdlib:arm64 (3.7.3-1) ... Setting up libhttp-message-perl (6.18-1) ... Setting up libdrm-amdgpu1:arm64 (2.4.97-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:arm64 (1.13.1-2) ... Setting up libpaper1:arm64 (1.1.28) ... Creating config file /etc/papersize with new version Setting up python3.7 (3.7.3-2+deb10u1) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up liblapack3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libdrm-nouveau2:arm64 (2.4.97-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libdrm-etnaviv1:arm64 (2.4.97-1) ... Setting up gpg-agent (2.2.12-1+deb10u1) ... Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up libhttp-cookies-perl (6.04-1) ... Setting up libdrm-radeon1:arm64 (2.4.97-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl (0.015-1+b1) ... Setting up gpgsm (2.2.12-1+deb10u1) ... Setting up libgl1-mesa-dri:arm64 (18.3.6-2+deb10u1) ... Setting up libxext6:arm64 (2:1.3.3-1+b2) ... Setting up python3 (3.7.3-1) ... Setting up libpaper-utils (1.1.28) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxxf86vm1:arm64 (1:1.1.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dirmngr (2.2.12-1+deb10u1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libxfixes3:arm64 (1:5.0.3-1) ... Setting up libxt6:arm64 (1:1.1.5-1+b3) ... Setting up gpg-wks-server (2.2.12-1+deb10u1) ... Setting up libcups2:arm64 (2.2.10-6+deb10u3) ... Setting up libxss1:arm64 (1:1.2.3-1) ... Setting up libfontconfig1:arm64 (2.13.1-2) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.2-2) ... Setting up libxdamage1:arm64 (1:1.1.4-3+b3) ... Setting up libxi6:arm64 (2:1.7.9-1) ... Setting up gpg-wks-client (2.2.12-1+deb10u1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libxtst6:arm64 (2:1.2.3-1) ... Setting up libmoo-perl (2.003004-2) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:arm64 (8.6.9-2) ... Setting up libpango-1.0-0:arm64 (1.42.4-8~deb10u1) ... Setting up libcairo2:arm64 (1.16.0-4) ... Setting up gnupg (2.2.12-1+deb10u1) ... Setting up libpangoft2-1.0-0:arm64 (1.42.4-8~deb10u1) ... Setting up libpangocairo-1.0-0:arm64 (1.42.4-8~deb10u1) ... Setting up libglx-mesa0:arm64 (18.3.6-2+deb10u1) ... Setting up libglx0:arm64 (1.1.0-1) ... Setting up libgl1:arm64 (1.1.0-1) ... Setting up r-base-core (3.5.2-1) ... Creating config file /etc/R/Renviron with new version Setting up default-jre-headless (2:1.11-71) ... Setting up libwww-perl (6.36-2) ... Setting up openjdk-11-jre-headless:arm64 (11.0.6+10-1~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jre:arm64 (11.0.6+10-1~deb10u1) ... Setting up openjdk-11-jdk-headless:arm64 (11.0.6+10-1~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jaotc to provide /usr/bin/jaotc (jaotc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre (2:1.11-71) ... Setting up antlr (2.7.7+dfsg-9.2) ... Setting up dh-autoreconf (19) ... Setting up default-jdk-headless (2:1.11-71) ... Setting up devscripts (2.19.5+deb10u1) ... Setting up r-cran-rjava (0.9-10-2+b1) ... Setting up ant (1.10.5-2) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up openjdk-11-jdk:arm64 (11.0.6+10-1~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up ca-certificates-java (20190405) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Taiwan_GRCA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:Certinomis_-_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AddTrust_External_Root.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up javacc (5.0-8) ... Setting up ant-contrib (1.0~b3+svn177-10) ... Setting up debhelper (12.1.1) ... Setting up default-jdk (2:1.11-71) ... Setting up ant-optional (1.10.5-2) ... Setting up javahelper (0.72.9) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for sgml-base (1.29) ... Setting up docbook-xsl (1.79.1+dfsg-2) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/cdk-1.2.10/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package cdk dpkg-buildpackage: info: source version 1:1.2.10-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Emmanuel Bourg dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with javahelper dh_auto_clean ant -propertyfile ./debian/ant.properties clean Buildfile: /build/cdk-1.2.10/build.xml clean: BUILD SUCCESSFUL Total time: 3 seconds jh_clean dh_clean debian/rules build dh build --with javahelper dh_update_autotools_config dh_autoreconf dh_auto_configure jh_linkjars debian/rules override_dh_auto_build make[1]: Entering directory '/build/cdk-1.2.10' dh_auto_build -- -Dlib=/usr/share/java info dist-all ant -propertyfile ./debian/ant.properties -Duser.name debian -Dlib=/usr/share/java info dist-all Buildfile: /build/cdk-1.2.10/build.xml checkPlatforms: check: info: [echo] Platform: [echo] OS: Linux [echo] Architecture: aarch64 [echo] Version: 4.4.0-185-generic [echo] Mac OS/X found: ${isMacOsX} [echo] [echo] Java/Ant Environment: [echo] Java version: 11.0.6 [echo] Java vendor: Debian [echo] Java dir: /usr/lib/jvm/java-11-openjdk-arm64 [echo] Java ext dir: ${java.ext.dirs} [echo] Ant version: Apache Ant(TM) version 1.10.5 compiled on August 27 2018 [echo] ${ANT_HOME}: /usr/share/ant [echo] hasAnt17: true [echo] [echo] CDK Environment: [echo] CDK version: 1.2.10 [echo] build.xml: $Id$ [echo] Junit found: true [echo] --- required libraries --- [echo] Vecmath found: true [echo] Log4j found: true [echo] JGraphT found: true [echo] --- distributed (but optional) libraries --- [echo] CMLDOM found: ${cmllibs.present} [echo] --- optional libraries --- [echo] [echo] Compiling: [echo] for: modern [echo] debug: on [echo] deprecation: on [echo] optimization: off [echo] parallel: false [echo] threads: 4 [echo] [echo] Available Targets [echo] clean: Remove class files and any temporary files [echo] dist-all: Compile all modules [echo] dist-large: Create the comprehensive jar, with all modules [echo] test-dist-all: Compile all test modules [echo] test-dist-large: Create a single jar file with all test modules [echo] jarTestdata: Create the jar file with all test data. Used in testing [echo] dist-all: checkPlatforms: check: setupBuildDir: [mkdir] Created dir: /build/cdk-1.2.10/build [mkdir] Created dir: /build/cdk-1.2.10/sourcedist [mkdir] Created dir: /build/cdk-1.2.10/dist [mkdir] Created dir: /build/cdk-1.2.10/reports init: javacc: [echo] Compiling Ant 1.6 depending classes. [javacc] Java Compiler Compiler Version 5.0 (Parser Generator) [javacc] (type "javacc" with no arguments for help) [javacc] Warning: Line 3, Column 1: Bad option name "OPTIMIZE_TOKEN_MANAGER". Option setting will be ignored. [javacc] Reading from file /build/cdk-1.2.10/src/main/org/openscience/cdk/iupac/parser/NomParser.jj . . . [javacc] File "TokenMgrError.java" does not exist. Will create one. [javacc] File "ParseException.java" does not exist. Will create one. [javacc] File "Token.java" does not exist. Will create one. [javacc] File "SimpleCharStream.java" does not exist. Will create one. [javacc] Parser generated with 0 errors and 1 warnings. [jjtree] Java Compiler Compiler Version 5.0 (Tree Builder) [jjtree] (type "jjtree" with no arguments for help) [jjtree] Reading from file /build/cdk-1.2.10/src/main/org/openscience/cdk/smiles/smarts/parser/SMARTSParser.jjt . . . [jjtree] File "SMARTSParserTreeConstants.java" does not exist. Will create one. [jjtree] File "SMARTSParserVisitor.java" does not exist. Will create one. [jjtree] File "JJTSMARTSParserState.java" does not exist. Will create one. [jjtree] Annotated grammar generated successfully in /build/cdk-1.2.10/src/main/org/openscience/cdk/smiles/smarts/parser/SMARTSParser.jj [javacc] Java Compiler Compiler Version 5.0 (Parser Generator) [javacc] (type "javacc" with no arguments for help) [javacc] Reading from file /build/cdk-1.2.10/src/main/org/openscience/cdk/smiles/smarts/parser/SMARTSParser.jj . . . [javacc] File "TokenMgrError.java" does not exist. Will create one. [javacc] File "ParseException.java" does not exist. Will create one. [javacc] File "Token.java" does not exist. Will create one. [javacc] File "SimpleCharStream.java" does not exist. Will create one. [javacc] Parser generated successfully. [replace] Replaced 10 occurrences in 10 files. customize: runDoclet: [echo] Not skipping doclet run... [javac] Using javac -source 1.5 is no longer supported, switching to 6 [javac] Compiling 1 source file to /build/cdk-1.2.10/build [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 3 warnings compile-init: checkPlatforms: check: dist.init: [mkdir] Created dir: /build/cdk-1.2.10/dist/jar compile-needed-test: compile-module: [echo] Compiling classes for CDK's interfaces module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: ${module.cdkdepends.present} [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/interfaces [mkdir] Created dir: /build/cdk-1.2.10/build/interfaces [copy] Copying 45 files to /build/cdk-1.2.10/build/src/interfaces [javac] Compiling 45 source files to /build/cdk-1.2.10/build/interfaces [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-interfaces.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-interfaces-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/interfaces [delete] Deleting directory /build/cdk-1.2.10/build/interfaces checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's annotation module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: ${module.cdkdepends.present} [echo] Library dependencies defined: ${module.libdepends.present} [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/annotation [mkdir] Created dir: /build/cdk-1.2.10/build/annotation [copy] Copying 3 files to /build/cdk-1.2.10/build/src/annotation [javac] Compiling 3 source files to /build/cdk-1.2.10/build/annotation [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-annotation.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-annotation-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/annotation [delete] Deleting directory /build/cdk-1.2.10/build/annotation checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's core module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/core [mkdir] Created dir: /build/cdk-1.2.10/build/core [copy] Copying 25 files to /build/cdk-1.2.10/build/src/core [javac] Compiling 25 source files to /build/cdk-1.2.10/build/core [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/core/org/openscience/cdk/config/AtomTypeFactory.java:227: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.openscience.cdk.config.TXTBasedAtomTypeConfigurator"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/core/org/openscience/cdk/config/AtomTypeFactory.java:231: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.openscience.cdk.config.CDKBasedAtomTypeConfigurator"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/core/org/openscience/cdk/config/AtomTypeFactory.java:235: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.openscience.cdk.config.OWLBasedAtomTypeConfigurator"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/core/org/openscience/cdk/config/TXTBasedAtomTypeConfigurator.java:120: warning: [deprecation] Double(String) in Double has been deprecated [javac] mass = new Double(sam); [javac] ^ [javac] /build/cdk-1.2.10/build/src/core/org/openscience/cdk/config/TXTBasedAtomTypeConfigurator.java:121: warning: [deprecation] Double(String) in Double has been deprecated [javac] covalent = new Double(scovalent); [javac] ^ [javac] /build/cdk-1.2.10/build/src/core/org/openscience/cdk/config/atomtypes/AtomTypeReader.java:90: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("gnu.xml.aelfred2.XmlReader"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/core/org/openscience/cdk/config/atomtypes/AtomTypeReader.java:103: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.apache.xerces.parsers.SAXParser"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/core/org/openscience/cdk/config/atomtypes/OWLAtomTypeReader.java:86: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.apache.xerces.parsers.SAXParser"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/core/org/openscience/cdk/config/isotopes/IsotopeReader.java:98: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("gnu.xml.aelfred2.XmlReader"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/core/org/openscience/cdk/config/isotopes/IsotopeReader.java:111: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.apache.xerces.parsers.SAXParser"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] 14 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-core.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-core-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/core [delete] Deleting directory /build/cdk-1.2.10/build/core checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's ioformats module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: ${module.libdepends.present} [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/ioformats [mkdir] Created dir: /build/cdk-1.2.10/build/ioformats [copy] Copying 94 files to /build/cdk-1.2.10/build/src/ioformats [javac] Compiling 94 source files to /build/cdk-1.2.10/build/ioformats [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-ioformats.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-ioformats-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/ioformats [delete] Deleting directory /build/cdk-1.2.10/build/ioformats checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's data module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/data [mkdir] Created dir: /build/cdk-1.2.10/build/data [copy] Copying 41 files to /build/cdk-1.2.10/build/src/data [javac] Compiling 41 source files to /build/cdk-1.2.10/build/data [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] Note: /build/cdk-1.2.10/build/src/data/org/openscience/cdk/formula/AdductFormula.java uses unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-data.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-data-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/data [delete] Deleting directory /build/cdk-1.2.10/build/data checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's dict module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/dict [mkdir] Created dir: /build/cdk-1.2.10/build/dict [copy] Copying 8 files to /build/cdk-1.2.10/build/src/dict [javac] Compiling 8 source files to /build/cdk-1.2.10/build/dict [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/dict/org/openscience/cdk/dict/Dictionary.java:35: warning: [deprecation] XMLReaderFactory in org.xml.sax.helpers has been deprecated [javac] import org.xml.sax.helpers.XMLReaderFactory; [javac] ^ [javac] /build/cdk-1.2.10/build/src/dict/org/openscience/cdk/dict/Dictionary.java:68: warning: [deprecation] XMLReaderFactory in org.xml.sax.helpers has been deprecated [javac] parser = XMLReaderFactory.createXMLReader(); [javac] ^ [javac] 6 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-dict.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-dict-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/dict [delete] Deleting directory /build/cdk-1.2.10/build/dict checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's diff module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/diff [mkdir] Created dir: /build/cdk-1.2.10/build/diff [copy] Copying 24 files to /build/cdk-1.2.10/build/src/diff [javac] Compiling 24 source files to /build/cdk-1.2.10/build/diff [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-diff.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-diff-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/diff [delete] Deleting directory /build/cdk-1.2.10/build/diff checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's qm module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/qm [mkdir] Created dir: /build/cdk-1.2.10/build/qm [copy] Copying 16 files to /build/cdk-1.2.10/build/src/qm [javac] Compiling 16 source files to /build/cdk-1.2.10/build/qm [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] Note: /build/cdk-1.2.10/build/src/qm/org/openscience/cdk/renderer/GraphRendererModel.java uses unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qm.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qm-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/qm [delete] Deleting directory /build/cdk-1.2.10/build/qm checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's standard module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/standard [mkdir] Created dir: /build/cdk-1.2.10/build/standard [copy] Copying 84 files to /build/cdk-1.2.10/build/src/standard [javac] Compiling 84 source files to /build/cdk-1.2.10/build/standard [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/standard/org/openscience/cdk/validate/ProblemMarker.java:49: warning: [deprecation] Boolean(boolean) in Boolean has been deprecated [javac] object.setProperty(ERROR_MARKER, new Boolean(true)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/standard/org/openscience/cdk/validate/ProblemMarker.java:54: warning: [deprecation] Boolean(boolean) in Boolean has been deprecated [javac] object.setProperty(WARNING_MARKER, new Boolean(true)); [javac] ^ [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 6 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-standard.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-standard-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/standard [delete] Deleting directory /build/cdk-1.2.10/build/standard checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's datadebug module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/datadebug [mkdir] Created dir: /build/cdk-1.2.10/build/datadebug [copy] Copying 39 files to /build/cdk-1.2.10/build/src/datadebug [javac] Compiling 39 source files to /build/cdk-1.2.10/build/datadebug [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugAdductFormula.java:70: warning: [deprecation] setCharge(Integer) in AdductFormula has been deprecated [javac] public void setCharge(Integer charge) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugAdductFormula.java:72: warning: [deprecation] setCharge(Integer) in AdductFormula has been deprecated [javac] super.setCharge(charge); [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugAminoAcid.java:256: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] public double getBondOrderSum(IAtom atom) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugAminoAcid.java:258: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] return super.getBondOrderSum(atom); [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugAtomContainer.java:277: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] public double getBondOrderSum(IAtom atom) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugAtomContainer.java:279: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] return super.getBondOrderSum(atom); [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugBioPolymer.java:269: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] public double getBondOrderSum(IAtom atom) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugBioPolymer.java:271: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] return super.getBondOrderSum(atom); [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugCrystal.java:278: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] public double getBondOrderSum(IAtom atom) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugCrystal.java:280: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] return super.getBondOrderSum(atom); [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugMolecule.java:278: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] public double getBondOrderSum(IAtom atom) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugMolecule.java:280: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] return super.getBondOrderSum(atom); [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugMonomer.java:266: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] public double getBondOrderSum(IAtom atom) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugMonomer.java:268: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] return super.getBondOrderSum(atom); [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugPolymer.java:268: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] public double getBondOrderSum(IAtom atom) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugPolymer.java:270: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] return super.getBondOrderSum(atom); [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugRing.java:291: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] public double getBondOrderSum(IAtom atom) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugRing.java:293: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] return super.getBondOrderSum(atom); [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugStrand.java:268: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] public double getBondOrderSum(IAtom atom) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugStrand.java:270: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] return super.getBondOrderSum(atom); [javac] ^ [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 24 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-datadebug.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-datadebug-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/datadebug [delete] Deleting directory /build/cdk-1.2.10/build/datadebug checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's nonotify module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/nonotify [mkdir] Created dir: /build/cdk-1.2.10/build/nonotify [copy] Copying 39 files to /build/cdk-1.2.10/build/src/nonotify [javac] Compiling 39 source files to /build/cdk-1.2.10/build/nonotify [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-nonotify.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-nonotify-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/nonotify [delete] Deleting directory /build/cdk-1.2.10/build/nonotify checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's isomorphism module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/isomorphism [mkdir] Created dir: /build/cdk-1.2.10/build/isomorphism [copy] Copying 16 files to /build/cdk-1.2.10/build/src/isomorphism [javac] Compiling 16 source files to /build/cdk-1.2.10/build/isomorphism [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-isomorphism.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-isomorphism-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/isomorphism [delete] Deleting directory /build/cdk-1.2.10/build/isomorphism checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's atomtype module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/atomtype [mkdir] Created dir: /build/cdk-1.2.10/build/atomtype [copy] Copying 4 files to /build/cdk-1.2.10/build/src/atomtype [javac] Compiling 4 source files to /build/cdk-1.2.10/build/atomtype [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/atomtype/org/openscience/cdk/config/atomtypes/OWLAtomTypeMappingReader.java:85: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.apache.xerces.parsers.SAXParser"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] 5 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-atomtype.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-atomtype-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/atomtype [delete] Deleting directory /build/cdk-1.2.10/build/atomtype checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's render module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/render [mkdir] Created dir: /build/cdk-1.2.10/build/render [copy] Copying 4 files to /build/cdk-1.2.10/build/src/render [javac] Compiling 4 source files to /build/cdk-1.2.10/build/render [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-render.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-render-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/render [delete] Deleting directory /build/cdk-1.2.10/build/render checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's valencycheck module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/valencycheck [mkdir] Created dir: /build/cdk-1.2.10/build/valencycheck [copy] Copying 6 files to /build/cdk-1.2.10/build/src/valencycheck [javac] Compiling 6 source files to /build/cdk-1.2.10/build/valencycheck [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-valencycheck.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-valencycheck-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/valencycheck [delete] Deleting directory /build/cdk-1.2.10/build/valencycheck checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's formula module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/formula [mkdir] Created dir: /build/cdk-1.2.10/build/formula [copy] Copying 19 files to /build/cdk-1.2.10/build/src/formula [javac] Compiling 19 source files to /build/cdk-1.2.10/build/formula [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/formula/org/openscience/cdk/tools/manipulator/MolecularFormulaManipulator.java:546: warning: [deprecation] Integer(String) in Integer has been deprecated [javac] return new Integer(multiple); [javac] ^ [javac] Note: /build/cdk-1.2.10/build/src/formula/org/openscience/cdk/formula/rules/IsotopePatternRule.java uses unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 5 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-formula.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-formula-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/formula [delete] Deleting directory /build/cdk-1.2.10/build/formula checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's io module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/io [mkdir] Created dir: /build/cdk-1.2.10/build/io [copy] Copying 79 files to /build/cdk-1.2.10/build/src/io [javac] Compiling 79 source files to /build/cdk-1.2.10/build/io [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/CMLReader.java:147: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("gnu.xml.aelfred2.XmlReader"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/CMLReader.java:160: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.apache.xerces.parsers.SAXParser"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/Gaussian98Reader.java:504: warning: [deprecation] Double(double) in Double has been deprecated [javac] ac.getAtom(atomIndex).setProperty(CDKConstants.ISOTROPIC_SHIELDING, new Double(shielding)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/MDLReader.java:374: warning: [deprecation] Double(String) in Double has been deprecated [javac] x = new Double(line.substring( 0,10).trim()).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/MDLReader.java:375: warning: [deprecation] Double(String) in Double has been deprecated [javac] y = new Double(line.substring(10,20).trim()).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/MDLReader.java:376: warning: [deprecation] Double(String) in Double has been deprecated [javac] z = new Double(line.substring(20,30).trim()).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/MDLReader.java:481: warning: [deprecation] Double(double) in Double has been deprecated [javac] atom.setProperty("first shift",new Double(shift)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/MDLReader.java:485: warning: [deprecation] Double(double) in Double has been deprecated [javac] atom.setProperty("second shift",new Double(shift)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/ReaderFactory.java:156: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass(readerClassName).newInstance(); [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/WriterFactory.java:155: warning: [deprecation] newInstance() in Class has been deprecated [javac] if (writer != null) return writer.newInstance(); [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/WriterFactory.java:159: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass(writerClassName).newInstance(); [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/XYZReader.java:189: warning: [deprecation] Double(String) in Double has been deprecated [javac] x = (new Double(tokenizer.nextToken())).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/XYZReader.java:190: warning: [deprecation] Double(String) in Double has been deprecated [javac] y = (new Double(tokenizer.nextToken())).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/XYZReader.java:191: warning: [deprecation] Double(String) in Double has been deprecated [javac] z = (new Double(tokenizer.nextToken())).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/XYZReader.java:194: warning: [deprecation] Double(String) in Double has been deprecated [javac] charge = (new Double(tokenizer.nextToken())).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/cml/QSARConvention.java:143: warning: [deprecation] Boolean(String) in Boolean has been deprecated [javac] result = new BooleanResult(new Boolean(descriptorValue).booleanValue()); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/iterator/event/EventCMLReader.java:125: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("gnu.xml.aelfred2.XmlReader"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/iterator/event/EventCMLReader.java:138: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.apache.xerces.parsers.SAXParser"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/program/GaussianInputWriter.java:222: warning: [deprecation] Double(double) in Double has been deprecated [javac] st = st + new Double(p3.x).toString() + " " [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/program/GaussianInputWriter.java:223: warning: [deprecation] Double(double) in Double has been deprecated [javac] + new Double(p3.y).toString() + " " [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/program/GaussianInputWriter.java:224: warning: [deprecation] Double(double) in Double has been deprecated [javac] + new Double(p3.z).toString(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/random/RandomAccessReader.java:112: warning: [deprecation] finalize() in Object has been deprecated [javac] protected void finalize() throws Throwable { [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/random/RandomAccessReader.java:118: warning: [deprecation] finalize() in Object has been deprecated [javac] super.finalize(); [javac] ^ [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 27 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-io.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-io-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/io [delete] Deleting directory /build/cdk-1.2.10/build/io checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's structgen module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: ${module.libdepends.present} [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/structgen [mkdir] Created dir: /build/cdk-1.2.10/build/structgen [copy] Copying 8 files to /build/cdk-1.2.10/build/src/structgen [javac] Compiling 8 source files to /build/cdk-1.2.10/build/structgen [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-structgen.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-structgen-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/structgen [delete] Deleting directory /build/cdk-1.2.10/build/structgen checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's pdb module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/pdb [mkdir] Created dir: /build/cdk-1.2.10/build/pdb [copy] Copying 4 files to /build/cdk-1.2.10/build/src/pdb [javac] Compiling 4 source files to /build/cdk-1.2.10/build/pdb [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/pdb/org/openscience/cdk/io/PDBReader.java:302: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] if (readConnect.isSet() && atomNumberMap.put(new Integer(oAtom.getSerial()), oAtom) != null) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/pdb/org/openscience/cdk/io/PDBReader.java:317: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] if (atomNumberMap.put(new Integer(oAtom.getSerial()), oAtom) != null) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/pdb/org/openscience/cdk/io/PDBReader.java:512: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] IAtom firstAtom = (PDBAtom)atomNumberMap.get(new Integer(bondAtomNo)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/pdb/org/openscience/cdk/io/PDBReader.java:513: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] IAtom secondAtom = (PDBAtom)atomNumberMap.get(new Integer(bondedAtomNo)); [javac] ^ [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 8 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-pdb.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-pdb-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/pdb [delete] Deleting directory /build/cdk-1.2.10/build/pdb checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's smiles module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/smiles [mkdir] Created dir: /build/cdk-1.2.10/build/smiles [copy] Copying 7 files to /build/cdk-1.2.10/build/src/smiles [javac] Compiling 7 source files to /build/cdk-1.2.10/build/smiles [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/smiles/org/openscience/cdk/smiles/SmilesGenerator.java:992: warning: [deprecation] Double(double) in Double has been deprecated [javac] hm.put(new Double(BondTools.giveAngle(atom, parent, ((IAtom) chiralNeighbours.get(i)))), Integer.valueOf(i)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/smiles/org/openscience/cdk/smiles/SmilesGenerator.java:1049: warning: [deprecation] Double(double) in Double has been deprecated [javac] hm.put(new Double(BondTools.giveAngle(atom, parent, ((IAtom) chiralNeighbours.get(i)))), Integer.valueOf(i)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/smiles/org/openscience/cdk/smiles/SmilesGenerator.java:1238: warning: [deprecation] Double(double) in Double has been deprecated [javac] hm.put(new Double(BondTools.giveAngle(atom, parent, ((IAtom) chiralNeighbours.get(i)))), Integer.valueOf(i)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/smiles/org/openscience/cdk/smiles/SmilesGenerator.java:1257: warning: [deprecation] Double(double) in Double has been deprecated [javac] hm.put(new Double(BondTools.giveAngle(atom, parent, ((IAtom) chiralNeighbours.get(i)))), Integer.valueOf(i)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/smiles/org/openscience/cdk/smiles/SmilesGenerator.java:1276: warning: [deprecation] Double(double) in Double has been deprecated [javac] hm.put(new Double(BondTools.giveAngle(atom, parent, ((IAtom) chiralNeighbours.get(i)))), Integer.valueOf(i)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/smiles/org/openscience/cdk/smiles/SmilesGenerator.java:1297: warning: [deprecation] Double(double) in Double has been deprecated [javac] hm.put(new Double((BondTools.giveAngleFromMiddle(atom, parent, ((IAtom) chiralNeighbours.get(i))))), Integer.valueOf(i)); [javac] ^ [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 10 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-smiles.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-smiles-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/smiles [delete] Deleting directory /build/cdk-1.2.10/build/smiles checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's sdg module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/sdg [mkdir] Created dir: /build/cdk-1.2.10/build/sdg [copy] Copying 6 files to /build/cdk-1.2.10/build/src/sdg [javac] Compiling 6 source files to /build/cdk-1.2.10/build/sdg [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/sdg/org/openscience/cdk/layout/AtomPlacer.java:887: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] ac.getAtom(f).setProperty("Weight", new Integer(weights[f])); [javac] ^ [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 5 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-sdg.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-sdg-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/sdg [delete] Deleting directory /build/cdk-1.2.10/build/sdg checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's inchi module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/inchi [mkdir] Created dir: /build/cdk-1.2.10/build/inchi [copy] Copying 3 files to /build/cdk-1.2.10/build/src/inchi [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-inchi.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-inchi-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/inchi [delete] Deleting directory /build/cdk-1.2.10/build/inchi checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's libiocml module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/libiocml [mkdir] Created dir: /build/cdk-1.2.10/build/libiocml [copy] Copying 4 files to /build/cdk-1.2.10/build/src/libiocml [javac] Compiling 1 source file to /build/cdk-1.2.10/build/libiocml [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-libiocml.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-libiocml-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/libiocml [delete] Deleting directory /build/cdk-1.2.10/build/libiocml checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's control module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/control [mkdir] Created dir: /build/cdk-1.2.10/build/control [copy] Copying 5 files to /build/cdk-1.2.10/build/src/control [javac] Compiling 5 source files to /build/cdk-1.2.10/build/control [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-control.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-control-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/control [delete] Deleting directory /build/cdk-1.2.10/build/control checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's extra module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/extra [mkdir] Created dir: /build/cdk-1.2.10/build/extra [copy] Copying 79 files to /build/cdk-1.2.10/build/src/extra [javac] Compiling 79 source files to /build/cdk-1.2.10/build/extra [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/config/elements/ElementPTReader.java:91: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("gnu.xml.aelfred2.XmlReader"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/config/elements/ElementPTReader.java:104: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.apache.xerces.parsers.SAXParser"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/INChIReader.java:134: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("gnu.xml.aelfred2.XmlReader"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/INChIReader.java:147: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.apache.xerces.parsers.SAXParser"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/ZMatrixReader.java:193: warning: [deprecation] Double(String) in Double has been deprecated [javac] d[i] = new Double(tokenizer.nextToken()); [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/ZMatrixReader.java:200: warning: [deprecation] Double(String) in Double has been deprecated [javac] d[i] = new Double(tokenizer.nextToken()); [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/ZMatrixReader.java:201: warning: [deprecation] Integer(String) in Integer has been deprecated [javac] a_atom[i] = new Integer(tokenizer.nextToken()) -1; [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/ZMatrixReader.java:202: warning: [deprecation] Double(String) in Double has been deprecated [javac] a[i] = new Double(tokenizer.nextToken()); [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/ZMatrixReader.java:208: warning: [deprecation] Integer(String) in Integer has been deprecated [javac] d_atom[i] = new Integer(tokenizer.nextToken()) -1; [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/ZMatrixReader.java:209: warning: [deprecation] Double(String) in Double has been deprecated [javac] d[i] = new Double(tokenizer.nextToken()); [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/ZMatrixReader.java:210: warning: [deprecation] Integer(String) in Integer has been deprecated [javac] a_atom[i] = new Integer(tokenizer.nextToken()) -1; [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/ZMatrixReader.java:211: warning: [deprecation] Double(String) in Double has been deprecated [javac] a[i] = new Double(tokenizer.nextToken()); [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/ZMatrixReader.java:212: warning: [deprecation] Integer(String) in Integer has been deprecated [javac] da_atom[i] = new Integer(tokenizer.nextToken()) -1; [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/ZMatrixReader.java:213: warning: [deprecation] Double(String) in Double has been deprecated [javac] da[i] = new Double(tokenizer.nextToken()); [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/protein/ProteinPocketFinder.java:427: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] + (int) root.z, new Integer(1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/validate/BasicValidator.java:321: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] int bos = (int)molecule.getBondOrderSum(atom); [javac] ^ [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 20 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-extra.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-extra-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/extra [delete] Deleting directory /build/cdk-1.2.10/build/extra checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's reaction module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/reaction [mkdir] Created dir: /build/cdk-1.2.10/build/reaction [copy] Copying 54 files to /build/cdk-1.2.10/build/src/reaction [javac] Compiling 54 source files to /build/cdk-1.2.10/build/reaction [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/reaction/org/openscience/cdk/reaction/ReactionEngine.java:86: warning: [deprecation] newInstance() in Class has been deprecated [javac] mechanism = (IReactionMechanism) this.getClass().getClassLoader().loadClass(mechanismName).newInstance(); [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/reaction/org/openscience/cdk/reaction/ReactionEngine.java:122: warning: [deprecation] newInstance() in Class has been deprecated [javac] IParameterReact ipc = (IParameterReact) this.getClass().getClassLoader().loadClass(paramName).newInstance(); [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] 6 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-reaction.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-reaction-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/reaction [delete] Deleting directory /build/cdk-1.2.10/build/reaction checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's pdbcml module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/pdbcml [mkdir] Created dir: /build/cdk-1.2.10/build/pdbcml [copy] Copying 1 file to /build/cdk-1.2.10/build/src/pdbcml [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-pdbcml.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-pdbcml-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/pdbcml [delete] Deleting directory /build/cdk-1.2.10/build/pdbcml checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's libiomd module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/libiomd [mkdir] Created dir: /build/cdk-1.2.10/build/libiomd [copy] Copying 5 files to /build/cdk-1.2.10/build/src/libiomd [javac] Compiling 4 source files to /build/cdk-1.2.10/build/libiomd [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] Note: /build/cdk-1.2.10/build/src/libiomd/org/openscience/cdk/libio/md/MDMolecule.java uses unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-libiomd.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-libiomd-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/libiomd [delete] Deleting directory /build/cdk-1.2.10/build/libiomd checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's charges module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/charges [mkdir] Created dir: /build/cdk-1.2.10/build/charges [copy] Copying 10 files to /build/cdk-1.2.10/build/src/charges [javac] Compiling 10 source files to /build/cdk-1.2.10/build/charges [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/charges/org/openscience/cdk/charges/AtomTypeCharges.java:132: warning: [deprecation] Double(double) in Double has been deprecated [javac] ac.getAtom(i).setCharge(new Double(ac.getAtom(i).getFormalCharge())); [javac] ^ [javac] /build/cdk-1.2.10/build/src/charges/org/openscience/cdk/charges/InductivePartialCharges.java:112: warning: [deprecation] Double(double) in Double has been deprecated [javac] atoms[a].setProperty("InductivePartialCharge", new Double(pCh[a + (s * atoms.length)])); [javac] ^ [javac] /build/cdk-1.2.10/build/src/charges/org/openscience/cdk/charges/InductivePartialCharges.java:113: warning: [deprecation] Double(double) in Double has been deprecated [javac] atoms[a].setProperty("EffectiveAtomicElectronegativity", new Double(ElEn[a + (s * atoms.length)])); [javac] ^ [javac] 7 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-charges.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-charges-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/charges [delete] Deleting directory /build/cdk-1.2.10/build/charges checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's smarts module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: true [mkdir] Created dir: /build/cdk-1.2.10/build/src/smarts [mkdir] Created dir: /build/cdk-1.2.10/build/smarts [copy] Copying 84 files to /build/cdk-1.2.10/build/src/smarts [javac] Compiling 84 source files to /build/cdk-1.2.10/build/smarts [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] Note: /build/cdk-1.2.10/build/src/smarts/org/openscience/cdk/isomorphism/matchers/smarts/SmallestRingAtom.java uses unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 4 warnings [copy] Copying 1 file to /build/cdk-1.2.10/build [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-smarts.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-smarts-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/smarts [delete] Deleting directory /build/cdk-1.2.10/build/smarts checkPlatforms: check: dist.init: compile-needed-test: compile-module: checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's qsar module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: true [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/qsar [mkdir] Created dir: /build/cdk-1.2.10/build/qsar [copy] Copying 30 files to /build/cdk-1.2.10/build/src/qsar [javac] Compiling 25 source files to /build/cdk-1.2.10/build/qsar [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:115: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.rms = V2M.VectorToMatrix(rms, ncase, npvar); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:116: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.xscores = V2M.VectorToMatrix(xscores, nobs, maxncomp); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:117: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.yscores = V2M.VectorToMatrix(yscores, nobs, maxncomp); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:118: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.yload = V2M.VectorToMatrix(yload, npvar, maxncomp); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:119: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.xload = V2M.VectorToMatrix(xload, nvar, maxncomp); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:120: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.ypred = V2M.VectorToCube(ypred, ncase, nobs, npvar); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:121: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.B = V2M.VectorToCube(B, ncase, nvar, npvar); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:147: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.rms = V2M.VectorToMatrix(rms, ncase, npvar); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:148: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.rmssd = V2M.VectorToMatrix(rmssd, ncase, npvar); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:149: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.r2 = V2M.VectorToMatrix(r2, ncase, npvar);; [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:150: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.ypred = V2M.VectorToCube(ypred, ncase, nobs, npvar); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/RModel.java:536: warning: [deprecation] finalize() in Object has been deprecated [javac] protected void finalize() { [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/CNNRegressionModel.java:149: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.params.put("rang", new Double(0.7)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/CNNRegressionModel.java:150: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.params.put("decay", new Double(0.0)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/CNNRegressionModel.java:155: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.params.put("abstol", new Double(1.0e-4)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/CNNRegressionModel.java:156: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.params.put("reltol", new Double(1.0e-8)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/CNNRegressionModel.java:229: warning: [deprecation] Double(double) in Double has been deprecated [javac] yy[i][0] = new Double(y[i]); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/CNNRegressionModel.java:231: warning: [deprecation] Double(double) in Double has been deprecated [javac] xx[i][j] = new Double(x[i][j]); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/CNNRegressionModel.java:284: warning: [deprecation] Double(double) in Double has been deprecated [javac] xx[i][j] = new Double(x[i][j]); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/CNNRegressionModel.java:289: warning: [deprecation] Double(double) in Double has been deprecated [javac] yy[i][j] = new Double(y[i][j]); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/LinearRegressionModel.java:179: warning: [deprecation] Double(double) in Double has been deprecated [javac] y[i] = new Double(yy[i]); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/LinearRegressionModel.java:180: warning: [deprecation] Double(double) in Double has been deprecated [javac] weights[i] = new Double(1.0); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/LinearRegressionModel.java:184: warning: [deprecation] Double(double) in Double has been deprecated [javac] x[i][j] = new Double(xx[i][j]); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/LinearRegressionModel.java:241: warning: [deprecation] Double(double) in Double has been deprecated [javac] y[i] = new Double(yy[i]); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/LinearRegressionModel.java:242: warning: [deprecation] Double(double) in Double has been deprecated [javac] wts[i] = new Double(weights[i]); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/LinearRegressionModel.java:246: warning: [deprecation] Double(double) in Double has been deprecated [javac] x[i][j] = new Double(xx[i][j]); [javac] ^ [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 30 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsar.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsar-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/qsar [delete] Deleting directory /build/cdk-1.2.10/build/qsar checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's ionpot module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: ${module.libdepends.present} [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/ionpot [mkdir] Created dir: /build/cdk-1.2.10/build/ionpot [copy] Copying 1 file to /build/cdk-1.2.10/build/src/ionpot [javac] Compiling 1 source file to /build/cdk-1.2.10/build/ionpot [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-ionpot.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-ionpot-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/ionpot [delete] Deleting directory /build/cdk-1.2.10/build/ionpot checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's fingerprint module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/fingerprint [mkdir] Created dir: /build/cdk-1.2.10/build/fingerprint [copy] Copying 7 files to /build/cdk-1.2.10/build/src/fingerprint [javac] Compiling 7 source files to /build/cdk-1.2.10/build/fingerprint [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-fingerprint.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-fingerprint-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/fingerprint [delete] Deleting directory /build/cdk-1.2.10/build/fingerprint checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's pcore module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/pcore [mkdir] Created dir: /build/cdk-1.2.10/build/pcore [copy] Copying 8 files to /build/cdk-1.2.10/build/src/pcore [javac] Compiling 8 source files to /build/cdk-1.2.10/build/pcore [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-pcore.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-pcore-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/pcore [delete] Deleting directory /build/cdk-1.2.10/build/pcore checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's qsaratomic module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/qsaratomic [mkdir] Created dir: /build/cdk-1.2.10/build/qsaratomic [copy] Copying 28 files to /build/cdk-1.2.10/build/src/qsaratomic [javac] Compiling 28 source files to /build/cdk-1.2.10/build/qsaratomic [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsaratomic.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsaratomic-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/qsaratomic [delete] Deleting directory /build/cdk-1.2.10/build/qsaratomic checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's qsarbond module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/qsarbond [mkdir] Created dir: /build/cdk-1.2.10/build/qsarbond [copy] Copying 5 files to /build/cdk-1.2.10/build/src/qsarbond [javac] Compiling 5 source files to /build/cdk-1.2.10/build/qsarbond [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsarbond.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsarbond-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/qsarbond [delete] Deleting directory /build/cdk-1.2.10/build/qsarbond checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's qsarprotein module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/qsarprotein [mkdir] Created dir: /build/cdk-1.2.10/build/qsarprotein [copy] Copying 2 files to /build/cdk-1.2.10/build/src/qsarprotein [javac] Compiling 2 source files to /build/cdk-1.2.10/build/qsarprotein [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/qsarprotein/org/openscience/cdk/qsar/descriptors/protein/TaeAminoAcidDescriptor.java:161: warning: [deprecation] Double(String) in Double has been deprecated [javac] for (int j = 1; j < components.length; j++) data[j - 1] = new Double(components[j]); [javac] ^ [javac] Note: /build/cdk-1.2.10/build/src/qsarprotein/org/openscience/cdk/qsar/descriptors/protein/TaeAminoAcidDescriptor.java uses unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 5 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsarprotein.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsarprotein-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/qsarprotein [delete] Deleting directory /build/cdk-1.2.10/build/qsarprotein checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's qsarcml module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/qsarcml [mkdir] Created dir: /build/cdk-1.2.10/build/qsarcml [copy] Copying 1 file to /build/cdk-1.2.10/build/src/qsarcml [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsarcml.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsarcml-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/qsarcml [delete] Deleting directory /build/cdk-1.2.10/build/qsarcml checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's qsarmolecular module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: true [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/qsarmolecular [mkdir] Created dir: /build/cdk-1.2.10/build/qsarmolecular [copy] Copying 44 files to /build/cdk-1.2.10/build/src/qsarmolecular [javac] Compiling 44 source files to /build/cdk-1.2.10/build/qsarmolecular [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/DescriptorEngine.java:685: warning: [deprecation] newInstance() in Class has been deprecated [javac] IDescriptor descriptor = (IDescriptor) this.getClass().getClassLoader().loadClass(descriptorName).newInstance(); [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/KappaShapeIndicesDescriptor.java:174: warning: [deprecation] Double(double) in Double has been deprecated [javac] if (!singlePaths.contains(new Double(bond1))) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/KappaShapeIndicesDescriptor.java:181: warning: [deprecation] Double(double) in Double has been deprecated [javac] if (!singlePaths.contains(new Double(bond2))) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/KappaShapeIndicesDescriptor.java:196: warning: [deprecation] Double(double) in Double has been deprecated [javac] if (!singlePaths.contains(new Double(bond3))) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:101: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.0+3.0+3+0+0+0+0+3+0+0", new Double(3.24)); // 1 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:102: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+2.0+3.0+2+0+0+0+0+1+1+0", new Double(12.36)); // 2 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:103: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+3.0+3.0+1+0+0+0+0+0+0+1", new Double(23.79)); // 3 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:104: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+2.0+5.0+3+0+0+0+0+1+2+0", new Double(11.68)); // 4 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:105: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+3.0+5.0+2+0+0+0+0+0+1+1", new Double(13.6)); // 5 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:106: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.0+3.0+3+0+0+0+1+3+0+0", new Double(3.01)); // 6 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:107: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.0+3.0+3+1+0+0+0+3+0+0", new Double(12.03)); // 7 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:108: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.0+3.0+3+1+0+0+1+3+0+0", new Double(21.94)); // 8 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:109: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+2.0+3.0+2+1+0+0+0+1+1+0", new Double(23.85)); //9 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:110: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.0+3.0+3+2+0+0+0+3+0+0", new Double(26.02)); // 10 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:111: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.0+4.0+4+0+1+0+0+4+0+0", new Double(0.0)); //11 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:112: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+2.0+4.0+3+0+1+0+0+2+1+0", new Double(3.01)); //12 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:113: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+3.0+4.0+2+0+1+0+0+1+0+1", new Double(4.36)); //13 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:114: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.0+4.0+4+1+1+0+0+4+0+0", new Double(4.44)); //14 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:115: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+2.0+4.0+3+1+1+0+0+2+1+0", new Double(13.97)); //15 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:116: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.0+4.0+4+2+1+0+0+4+0+0", new Double(16.61)); //16 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:117: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+2.0+4.0+3+2+1+0+0+2+1+0", new Double(25.59)); //17 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:118: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.0+4.0+4+3+1+0+0+4+0+0", new Double(27.64)); //18 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:119: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.5+3.0+2+0+0+2+0+0+0+0", new Double(12.89)); //19 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:120: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.5+4.5+3+0+0+3+0+0+0+0", new Double(4.41)); //20 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:121: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.5+4.0+3+0+0+2+0+1+0+0", new Double(4.93)); //21 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:122: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+2.0+5.0+3+0+0+2+0+0+1+0", new Double(8.39)); //22 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:123: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.5+4.0+3+1+0+2+0+1+0+0", new Double(15.79)); //23 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:124: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.5+4.5+3+0+1+3+0+0+0+0", new Double(4.1)); //24 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:125: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.5+4.0+3+0+1+2+0+1+0+0", new Double(3.88)); //25 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:126: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.5+4.0+3+1+1+2+0+1+0+0", new Double(14.14)); //26 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:128: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("O+1.0+2.0+2+0+0+0+0+2+0+0", new Double(9.23)); //27 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:129: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("O+1.0+2.0+2+0+0+0+1+2+0+0", new Double(12.53)); //28 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:130: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("O+2.0+2.0+1+0+0+0+0+0+1+0", new Double(17.07)); //29 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:131: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("O+1.0+1.0+1+0+-1+0+0+1+0+0", new Double(23.06)); //30 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:132: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("O+1.0+2.0+2+1+0+0+0+2+0+0", new Double(20.23)); //31 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:133: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("O+1.5+3.0+2+0+0+2+0+0+0+0", new Double(13.14)); //32 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:135: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("S+1.0+2.0+2+0+0+0+0+2+0+0", new Double(25.3)); //33 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:136: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("S+2.0+2.0+1+0+0+0+0+0+1+0", new Double(32.09)); //34 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:137: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("S+2.0+4.0+3+0+0+0+0+2+1+0", new Double(19.21)); //35 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:138: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("S+2.0+6.0+4+0+0+0+0+2+2+0", new Double(8.38)); //36 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:139: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("S+1.0+2.0+2+1+0+0+0+2+0+0", new Double(38.8)); //37 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:140: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("S+1.5+3.0+2+0+0+2+0+0+0+0", new Double(28.24)); //38 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:141: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("S+2.0+5.0+3+0+0+2+0+0+1+0", new Double(21.7)); //39 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:143: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("P+1.0+3.0+3+0+0+0+0+3+0+0", new Double(13.59)); //40 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:144: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("P+2.0+3.0+3+0+0+0+0+1+1+0", new Double(34.14)); //41 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:145: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("P+2.0+5.0+4+0+0+0+0+3+1+0", new Double(9.81)); //42 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:146: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("P+2.0+5.0+4+1+0+0+0+3+1+0", new Double(23.47)); //43 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:145: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("H", new Double(0.084)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:146: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("B", new Double(0.900)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:147: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("C", new Double(1.000)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:148: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("N", new Double(1.166)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:149: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("O", new Double(1.332)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:150: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("F", new Double(1.582)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:151: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("Al", new Double(2.246)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:152: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("Si", new Double(2.339)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:153: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("P", new Double(2.579)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:154: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("S", new Double(2.670)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:155: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("Cl", new Double(2.952)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:156: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("Fe", new Double(4.650)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:157: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("Co", new Double(4.907)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:158: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("Ni", new Double(4.887)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:159: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("Cu", new Double(5.291)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:160: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("Zn", new Double(5.445)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:161: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("Br", new Double(6.653)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:162: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("Sn", new Double(9.884)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:163: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("I", new Double(10.566)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:165: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("H", new Double(0.299)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:166: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("B", new Double(0.796)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:167: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("C", new Double(1.000)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:168: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("N", new Double(0.695)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:169: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("O", new Double(0.512)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:170: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("F", new Double(0.410)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:171: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("Al", new Double(1.626)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:172: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("Si", new Double(1.424)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:173: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("P", new Double(1.181)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:174: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("S", new Double(1.088)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:175: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("Cl", new Double(1.035)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:176: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("Fe", new Double(1.829)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:177: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("Co", new Double(1.561)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:178: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("Ni", new Double(0.764)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:179: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("Cu", new Double(0.512)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:180: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("Zn", new Double(1.708)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:181: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("Br", new Double(1.384)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:182: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("Sn", new Double(2.042)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:183: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("I", new Double(1.728)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:185: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("H", new Double(0.944)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:186: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("B", new Double(0.828)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:187: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("C", new Double(1.000)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:188: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("N", new Double(1.163)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:189: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("O", new Double(1.331)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:190: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("F", new Double(1.457)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:191: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("Al", new Double(0.624)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:192: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("Si", new Double(0.779)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:193: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("P", new Double(0.916)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:194: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("S", new Double(1.077)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:195: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("Cl", new Double(1.265)); [javac] ^ [javac] Note: /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java has additional uses or overrides of a deprecated API. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 100 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsarmolecular.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsarmolecular-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/qsarmolecular [delete] Deleting directory /build/cdk-1.2.10/build/qsarmolecular checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's forcefield module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/forcefield [mkdir] Created dir: /build/cdk-1.2.10/build/forcefield [copy] Copying 23 files to /build/cdk-1.2.10/build/src/forcefield [javac] Compiling 23 source files to /build/cdk-1.2.10/build/forcefield [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/ForceFieldConfigurator.java:283: warning: [deprecation] Double(double) in Double has been deprecated [javac] atom.setProperty("MAX_BOND_ORDER", new Double(molecule.getMaximumBondOrder(atom).ordinal()+1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:101: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:103: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:110: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:113: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:120: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:123: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:130: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:133: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:140: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:143: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:150: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:153: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:160: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:163: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:170: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:173: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:218: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:221: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:228: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:231: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:238: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:241: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:248: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:251: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:284: warning: [deprecation] Double(String) in Double has been deprecated [javac] mass = new Double(sam).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:316: warning: [deprecation] Double(String) in Double has been deprecated [javac] double epsi = new Double(sepsi).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:317: warning: [deprecation] Double(String) in Double has been deprecated [javac] double radius = new Double(sradius).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:318: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(radius)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:319: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(epsi)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:343: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:344: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va2 = new Double(value2).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:345: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:346: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:369: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:370: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va2 = new Double(value2).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:371: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:372: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:395: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:396: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va2 = new Double(value2).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:397: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:398: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:421: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:422: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va2 = new Double(value2).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:423: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:424: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:450: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:451: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va2 = new Double(value2).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:452: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va3 = new Double(value3).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:453: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va4 = new Double(value4).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:454: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:455: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:456: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va3)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:457: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va4)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:462: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:463: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:464: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va3)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:465: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va4)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:492: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:493: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va2 = new Double(value2).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:494: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va3 = new Double(value3).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:495: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va4 = new Double(value4).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:496: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:497: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:498: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va3)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:499: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va4)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:525: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:526: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va2 = new Double(value2).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:527: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va3 = new Double(value3).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:528: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va4 = new Double(value4).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:529: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:530: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:531: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va3)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:532: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va4)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:553: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:554: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:575: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:576: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:581: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:614: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:615: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va2 = new Double(value2).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:616: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va3 = new Double(value3).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:617: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:618: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:619: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va3)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:624: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:625: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:626: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va3)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:658: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:659: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va2 = new Double(value2).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:660: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va3 = new Double(value3).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:661: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:662: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:663: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va3)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:684: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:685: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] Note: Some input files additionally use or override a deprecated API. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 100 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-forcefield.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-forcefield-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/forcefield [delete] Deleting directory /build/cdk-1.2.10/build/forcefield checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's qsarionpot module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: ${module.libdepends.present} [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/qsarionpot [mkdir] Created dir: /build/cdk-1.2.10/build/qsarionpot [copy] Copying 3 files to /build/cdk-1.2.10/build/src/qsarionpot [javac] Compiling 3 source files to /build/cdk-1.2.10/build/qsarionpot [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsarionpot.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsarionpot-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/qsarionpot [delete] Deleting directory /build/cdk-1.2.10/build/qsarionpot checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's builder3d module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/builder3d [mkdir] Created dir: /build/cdk-1.2.10/build/builder3d [copy] Copying 5 files to /build/cdk-1.2.10/build/src/builder3d [javac] Compiling 5 source files to /build/cdk-1.2.10/build/builder3d [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-builder3d.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-builder3d-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/builder3d [delete] Deleting directory /build/cdk-1.2.10/build/builder3d checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's builder3dtools module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/builder3dtools [mkdir] Created dir: /build/cdk-1.2.10/build/builder3dtools [copy] Copying 1 file to /build/cdk-1.2.10/build/src/builder3dtools [javac] Compiling 1 source file to /build/cdk-1.2.10/build/builder3dtools [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/builder3dtools/org/openscience/cdk/modeling/builder3d/TemplateExtractor.java:440: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] timings.put(bin, new Integer((((Integer)timings.get(bin)).intValue()) + 1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/builder3dtools/org/openscience/cdk/modeling/builder3d/TemplateExtractor.java:442: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] timings.put(bin, new Integer(1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/builder3dtools/org/openscience/cdk/modeling/builder3d/TemplateExtractor.java:555: warning: [deprecation] Boolean(String) in Boolean has been deprecated [javac] args[1], new Boolean(args[2]).booleanValue(), new Boolean( [javac] ^ [javac] /build/cdk-1.2.10/build/src/builder3dtools/org/openscience/cdk/modeling/builder3d/TemplateExtractor.java:555: warning: [deprecation] Boolean(String) in Boolean has been deprecated [javac] args[1], new Boolean(args[2]).booleanValue(), new Boolean( [javac] ^ [javac] Note: /build/cdk-1.2.10/build/src/builder3dtools/org/openscience/cdk/modeling/builder3d/TemplateExtractor.java uses unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 8 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-builder3dtools.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-builder3dtools-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/builder3dtools [delete] Deleting directory /build/cdk-1.2.10/build/builder3dtools BUILD SUCCESSFUL Total time: 1 minute 4 seconds make[1]: Leaving directory '/build/cdk-1.2.10' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with javahelper dh_testroot dh_prep dh_installdirs dh_auto_install debian/rules override_dh_install make[1]: Entering directory '/build/cdk-1.2.10' dh_install for COMPONENT in annotation atomtype builder3d builder3dtools charges control core data dict diff extra fingerprint forcefield formula interfaces ioformats io ionpot isomorphism libiocml libiomd nonotify pcore pdb qm qsar qsaratomic qsarbond qsarionpot qsarmolecular qsarprotein reaction render sdg smarts smiles standard structgen valencycheck; do \ install -m 644 dist/jar/cdk-$COMPONENT.jar \ debian/libcdk-java/usr/share/java/cdk-$COMPONENT-1.2.10.jar; \ ln -s cdk-$COMPONENT-1.2.10.jar \ debian/libcdk-java/usr/share/java/cdk-$COMPONENT.jar; \ if [ $COMPONENT != "core" ]; then \ echo usr/share/java/cdk-$COMPONENT.jar cdk-core.jar >> debian/classpath; \ else \ echo usr/share/java/cdk-$COMPONENT.jar jama.jar jgrapht.jar log4j-1.2.jar xercesImpl.jar vecmath.jar xom.jar >> debian/classpath; \ fi \ done make[1]: Leaving directory '/build/cdk-1.2.10' jh_installjavadoc dh_installdocs dh_installchangelogs dh_perl dh_link jh_installlibs jh_classpath jh_manifest jh_depends dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libcdk-java' in '../libcdk-java_1.2.10-7_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../cdk_1.2.10-7_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/25705 and its subdirectories I: Current time: Mon Aug 23 02:59:15 -12 2021 I: pbuilder-time-stamp: 1629730755