I: pbuilder: network access will be disabled during build I: Current time: Sun Jan 15 16:54:27 +14 2023 I: pbuilder-time-stamp: 1673751267 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pybedtools_0.8.0-1.dsc] I: copying [./python-pybedtools_0.8.0.orig.tar.gz] I: copying [./python-pybedtools_0.8.0-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Jan 20 05:43:36 2019 +14 gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-pybedtools_0.8.0-1.dsc dpkg-source: info: extracting python-pybedtools in python-pybedtools-0.8.0 dpkg-source: info: unpacking python-pybedtools_0.8.0.orig.tar.gz dpkg-source: info: unpacking python-pybedtools_0.8.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying define_filenotfounderror_python2.patch dpkg-source: info: applying remove_badges_from_documentation.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/132235/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/132235/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/132235/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=d77f1cb060ce494ca76aeb462c0d8773 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=132235 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.4eYl327AJ0/pbuilderrc_bYl1 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.4eYl327AJ0/b2 --logfile b2/build.log python-pybedtools_0.8.0-1.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash -rwxr-xr-x 1 root root 109408 Mar 1 2019 date -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd -rwxr-xr-x 1 root root 93744 Mar 1 2019 df -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 35424 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln -rwxr-xr-x 1 root root 56760 Jul 27 2018 login -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 10 2019 more -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Jan 15 16:54 sh -> bash lrwxrwxrwx 1 root root 4 Dec 11 18:20 sh.distrib -> dash -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty -rwsr-xr-x 1 root root 63568 Jan 10 2019 su -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch -rwxr-xr-x 1 root root 35424 Mar 1 2019 true -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/132235/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 10), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-nose, python3-numpy, python3-numpydoc, python3-pandas, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 10); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpydoc; however: Package python3-numpydoc is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-tk; however: Package python3-tk is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on r-base-core; however: Package r-base-core is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} blt{a} bsdmainutils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbsd0{a} libcairo2{a} libcroco3{a} libcurl3-gnutls{a} libcurl4{a} libdatrie1{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts2{a} libice6{a} libicu63{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libnghttp2-14{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libssl1.1{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp6{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxss1{a} libxt6{a} libyaml-0-2{a} lsb-base{a} m4{a} man-db{a} mime-support{a} openssl{a} po-debconf{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-cycler{a} python3-dateutil{a} python3-dev{a} python3-distutils{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-jinja2{a} python3-kiwisolver{a} python3-lib2to3{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-nose{a} python3-numpy{a} python3-numpydoc{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-pygments{a} python3-pyparsing{a} python3-pysam{a} python3-requests{a} python3-roman{a} python3-setuptools{a} python3-six{a} python3-sphinx{a} python3-tk{a} python3-tz{a} python3-urllib3{a} python3-yaml{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} r-base-core{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tk8.6-blt2.5{a} ttf-bitstream-vera{a} ucf{a} unzip{a} x11-common{a} xdg-utils{a} xml-core{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl lynx publicsuffix python3-bs4 python3-html5lib python3-lxml python3-numexpr python3-pil python3-scipy python3-tables r-base-dev r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 175 newly installed, 0 to remove and 0 not upgraded. Need to get 148 MB of archives. After unpacking 403 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u7 [1539 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 sgml-base all 1.29 [14.8 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 bedtools amd64 2.27.1+dfsg-4 [593 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libtcl8.6 amd64 8.6.9+dfsg-2 [1005 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u2 [380 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 ttf-bitstream-vera all 1.10-8 [352 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libtk8.6 amd64 8.6.9-2 [768 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4 [587 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 blt amd64 2.5.3+dfsg-4 [14.8 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1d-0+deb10u7 [845 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 cython3 amd64 0.29.2-2 [1392 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 dh-python all 3.20190308 [99.3 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 docutils-common all 0.14+dfsg-4 [167 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 fonts-lyx all 2.3.2-1 [199 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u3 [65.8 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u3 [122 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u3 [370 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u3 [158 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 94 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u6 [224 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get: 98 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 libcurl3-gnutls amd64 7.64.0-4+deb10u2 [330 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u2 [332 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get: 102 http://deb.debian.org/debian buster/main amd64 libdeflate0 amd64 1.2-1 [55.4 kB] Get: 103 http://deb.debian.org/debian buster/main amd64 libexpat1-dev amd64 2.2.6-2+deb10u1 [153 kB] Get: 104 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u1 [63.7 kB] Get: 105 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get: 106 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get: 107 http://deb.debian.org/debian buster/main amd64 libhts2 amd64 1.9-12~deb10u1 [305 kB] Get: 108 http://deb.debian.org/debian buster/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get: 109 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 110 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 111 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get: 112 http://deb.debian.org/debian buster/main amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get: 113 http://deb.debian.org/debian buster/main amd64 libjs-underscore all 1.9.1~dfsg-1+deb10u1 [100.0 kB] Get: 114 http://deb.debian.org/debian buster/main amd64 libjs-sphinxdoc all 1.8.4-1 [95.9 kB] Get: 115 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get: 116 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get: 117 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get: 118 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get: 119 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] Get: 120 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get: 121 http://deb.debian.org/debian buster/main amd64 libpaper1 amd64 1.1.28 [21.3 kB] Get: 122 http://deb.debian.org/debian buster/main amd64 libpaper-utils amd64 1.1.28 [18.0 kB] Get: 123 http://deb.debian.org/debian buster/main amd64 libpython3.7 amd64 3.7.3-2+deb10u3 [1498 kB] Get: 124 http://deb.debian.org/debian buster/main amd64 libpython3.7-dev amd64 3.7.3-2+deb10u3 [48.4 MB] Get: 125 http://deb.debian.org/debian buster/main amd64 libpython3-dev amd64 3.7.3-1 [20.1 kB] Get: 126 http://deb.debian.org/debian buster/main amd64 libpython3-all-dev amd64 3.7.3-1 [1068 B] Get: 127 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 128 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get: 129 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u2 [271 kB] Get: 130 http://deb.debian.org/debian buster/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get: 131 http://deb.debian.org/debian buster/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get: 132 http://deb.debian.org/debian buster/main amd64 python-babel-localedata all 2.6.0+dfsg.1-1 [4083 kB] Get: 133 http://deb.debian.org/debian buster/main amd64 python-matplotlib-data all 3.0.2-2 [4138 kB] Get: 134 http://deb.debian.org/debian buster/main amd64 python3-alabaster all 0.7.8-1 [18.4 kB] Get: 135 http://deb.debian.org/debian buster/main amd64 python3-all amd64 3.7.3-1 [1068 B] Get: 136 http://deb.debian.org/debian buster/main amd64 python3.7-dev amd64 3.7.3-2+deb10u3 [510 kB] Get: 137 http://deb.debian.org/debian buster/main amd64 python3-dev amd64 3.7.3-1 [1264 B] Get: 138 http://deb.debian.org/debian buster/main amd64 python3-all-dev amd64 3.7.3-1 [1064 B] Get: 139 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 140 http://deb.debian.org/debian buster/main amd64 python3-tz all 2019.1-1 [27.1 kB] Get: 141 http://deb.debian.org/debian buster/main amd64 python3-babel all 2.6.0+dfsg.1-1 [96.7 kB] Get: 142 http://deb.debian.org/debian buster/main amd64 python3-certifi all 2018.8.24-1 [140 kB] Get: 143 http://deb.debian.org/debian buster/main amd64 python3-chardet all 3.0.4-3 [80.5 kB] Get: 144 http://deb.debian.org/debian buster/main amd64 python3-six all 1.12.0-1 [15.7 kB] Get: 145 http://deb.debian.org/debian buster/main amd64 python3-cycler all 0.10.0-1 [7556 B] Get: 146 http://deb.debian.org/debian buster/main amd64 python3-dateutil all 2.7.3-3 [64.5 kB] Get: 147 http://deb.debian.org/debian buster/main amd64 python3-roman all 2.0.0-3 [8768 B] Get: 148 http://deb.debian.org/debian buster/main amd64 python3-docutils all 0.14+dfsg-4 [378 kB] Get: 149 http://deb.debian.org/debian buster/main amd64 python3-idna all 2.6-1 [34.3 kB] Get: 150 http://deb.debian.org/debian buster/main amd64 python3-imagesize all 1.0.0-1 [4960 B] Get: 151 http://deb.debian.org/debian buster/main amd64 python3-markupsafe amd64 1.1.0-1 [14.8 kB] Get: 152 http://deb.debian.org/debian buster/main amd64 python3-jinja2 all 2.10-2 [106 kB] Get: 153 http://deb.debian.org/debian buster/main amd64 python3-kiwisolver amd64 1.0.1-2+b1 [65.4 kB] Get: 154 http://deb.debian.org/debian buster/main amd64 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get: 155 http://deb.debian.org/debian buster/main amd64 python3-numpy amd64 1:1.16.2-1 [2119 kB] Get: 156 http://deb.debian.org/debian buster/main amd64 python3-matplotlib amd64 3.0.2-2 [5353 kB] Get: 157 http://deb.debian.org/debian buster/main amd64 python3-nose all 1.3.7-4 [132 kB] Get: 158 http://deb.debian.org/debian buster/main amd64 sphinx-common all 1.8.4-1 [500 kB] Get: 159 http://deb.debian.org/debian buster/main amd64 python3-packaging all 19.0-1 [20.5 kB] Get: 160 http://deb.debian.org/debian buster/main amd64 python3-pygments all 2.3.1+dfsg-1+deb10u2 [594 kB] Get: 161 http://deb.debian.org/debian buster/main amd64 python3-urllib3 all 1.24.1-1 [97.1 kB] Get: 162 http://deb.debian.org/debian buster/main amd64 python3-requests all 2.21.0-1 [66.9 kB] Get: 163 http://deb.debian.org/debian buster/main amd64 python3-sphinx all 1.8.4-1 [481 kB] Get: 164 http://deb.debian.org/debian buster/main amd64 python3-numpydoc all 0.7.0-1 [18.3 kB] Get: 165 http://deb.debian.org/debian buster/main amd64 python3-pandas-lib amd64 0.23.3+dfsg-3 [3475 kB] Get: 166 http://deb.debian.org/debian buster/main amd64 python3-pandas all 0.23.3+dfsg-3 [1750 kB] Get: 167 http://deb.debian.org/debian buster/main amd64 python3-pysam amd64 0.15.2+ds-2 [1661 kB] Get: 168 http://deb.debian.org/debian buster/main amd64 python3-setuptools all 40.8.0-1 [306 kB] Get: 169 http://deb.debian.org/debian buster/main amd64 python3-tk amd64 3.7.3-1 [97.4 kB] Get: 170 http://deb.debian.org/debian buster/main amd64 python3-yaml amd64 3.13-2 [121 kB] Get: 171 http://deb.debian.org/debian buster/main amd64 zip amd64 3.0-11+b1 [234 kB] Get: 172 http://deb.debian.org/debian buster/main amd64 unzip amd64 6.0-23+deb10u2 [172 kB] Get: 173 http://deb.debian.org/debian buster/main amd64 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get: 174 http://deb.debian.org/debian buster/main amd64 r-base-core amd64 3.5.2-1 [23.9 MB] Get: 175 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] Fetched 148 MB in 4s (41.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../1-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../2-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../3-groff-base_1.22.4-3+deb10u1_amd64.deb ... Unpacking groff-base (1.22.4-3+deb10u1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../4-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../5-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../6-libssl1.1_1.1.1d-0+deb10u7_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1d-0+deb10u7) ... Selecting previously unselected package libpython3.7-minimal:amd64. Preparing to unpack .../7-libpython3.7-minimal_3.7.3-2+deb10u3_amd64.deb ... Unpacking libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../8-libexpat1_2.2.6-2+deb10u1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-2+deb10u1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../9-python3.7-minimal_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u3) ... Setting up libssl1.1:amd64 (1.1.1d-0+deb10u7) ... Setting up libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20090 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.3-1_amd64.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../2-libmpdec2_2.4.2-2_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../4-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package libpython3.7-stdlib:amd64. Preparing to unpack .../5-libpython3.7-stdlib_3.7.3-2+deb10u3_amd64.deb ... Unpacking libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package python3.7. Preparing to unpack .../6-python3.7_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7 (3.7.3-2+deb10u3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../7-libpython3-stdlib_3.7.3-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... 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No schema files found: doing nothing. Setting up fonts-lyx (2.3.2-1) ... Setting up unzip (6.0-23+deb10u2) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up libdeflate0:amd64 (1.2-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u6) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up python-babel-localedata (2.6.0+dfsg.1-1) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u3) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up zip (3.0-11+b1) ... Setting up autotools-dev (20180224.1) ... Setting up libexpat1-dev:amd64 (2.2.6-2+deb10u1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Setting up libx11-data (2:1.6.7-1+deb10u2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libfribidi0:amd64 (1.0.5-3.1+deb10u1) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up libtcl8.6:amd64 (8.6.9+dfsg-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:amd64 (0.6.1-2+deb10u1) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u3) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libthai-data (0.1.28-2) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up sgml-base (1.29) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u3) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u2) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Setting up python-matplotlib-data (3.0.2-2) ... Setting up openssl (1.1.1d-0+deb10u7) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up xdg-utils (1.1.3-1+deb10u1) ... Setting up bedtools (2.27.1+dfsg-4) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libjs-underscore (1.9.1~dfsg-1+deb10u1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libpython3.7:amd64 (3.7.3-2+deb10u3) ... Setting up libtool (2.4.6-9) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libpython3.7-dev:amd64 (3.7.3-2+deb10u3) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u6) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libthai0:amd64 (0.1.28-2) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 137 added, 0 removed; done. Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up libfreetype6:amd64 (2.9.1-3+deb10u2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u3) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up libjs-sphinxdoc (1.8.4-1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up xml-core (0.18+nmu1) ... Setting up libcurl4:amd64 (7.64.0-4+deb10u2) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:amd64 (1.1.28) ... Creating config file /etc/papersize with new version Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libpython3-dev:amd64 (3.7.3-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Setting up python3 (3.7.3-1) ... Setting up libpaper-utils (1.1.28) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (1.1.0-1) ... Setting up python3.7-dev (3.7.3-2+deb10u3) ... Setting up python3-tz (2019.1-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-six (1.12.0-1) ... Setting up python3-roman (2.0.0-3) ... Setting up python3-jinja2 (2.10-2) ... Setting up python3-pygments (2.3.1+dfsg-1+deb10u2) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up python3-certifi (2018.8.24-1) ... Setting up libpython3-all-dev:amd64 (3.7.3-1) ... Setting up sphinx-common (1.8.4-1) ... Setting up python3-cycler (0.10.0-1) ... Setting up python3-idna (2.6-1) ... Setting up cython3 (0.29.2-2) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up python3-urllib3 (1.24.1-1) ... Setting up python3-dateutil (2.7.3-3) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python3-imagesize (1.0.0-1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.2-2) ... Setting up python3-setuptools (40.8.0-1) ... Setting up libhts2:amd64 (1.9-12~deb10u1) ... Setting up python3-babel (2.6.0+dfsg.1-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-alabaster (0.7.8-1) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:amd64 (8.6.9-2) ... Setting up libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up python3-all (3.7.3-1) ... Setting up python3-yaml (3.13-2) ... Setting up python3-nose (1.3.7-4) ... Setting up libcairo2:amd64 (1.16.0-4+deb10u1) ... Setting up python3-packaging (19.0-1) ... Setting up python3-chardet (3.0.4-3) ... Setting up python3-dev (3.7.3-1) ... Setting up python3-requests (2.21.0-1) ... Setting up python3-kiwisolver (1.0.1-2+b1) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up python3-all-dev (3.7.3-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4) ... Setting up python3-matplotlib (3.0.2-2) ... Setting up python3-pysam (0.15.2+ds-2) ... Setting up blt (2.5.3+dfsg-4) ... Setting up python3-pandas-lib (0.23.3+dfsg-3) ... Setting up python3-tk:amd64 (3.7.3-1) ... Setting up python3-pandas (0.23.3+dfsg-3) ... Setting up r-base-core (3.5.2-1) ... Creating config file /etc/R/Renviron with new version Setting up dh-autoreconf (19) ... Setting up debhelper (12.1.1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.14+dfsg-4) ... Processing triggers for sgml-base (1.29) ... Setting up python3-docutils (0.14+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-sphinx (1.8.4-1) ... update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode Setting up python3-numpydoc (0.7.0-1) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package hostname: Name or service not known I: Running cd /build/python-pybedtools-0.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pybedtools_0.8.0-1_source.changes dpkg-buildpackage: info: source package python-pybedtools dpkg-buildpackage: info: source version 0.8.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-pybedtools-0.8.0' /bin/rm -rf fakehome .eggs .pybuild /bin/rm -rf debian/python3-pybedtools debian/files /bin/rm -rf pybedtools.egg-info /bin/rm -rf pybedtools/scripts/__pycache__/ /bin/rm -rf pybedtools/contrib/__pycache__/ /bin/rm -rf pybedtools/__pycache__/ find pybedtools -name "*.so" -o -name "*.o" | xargs -r rm rm -rf build /bin/rm -rf pybedtools/cbedtools.cpp pybedtools/featurefuncs.cpp find docs/source/autodocs/ -name "*.rst" | xargs -r /bin/rm #dh_auto_clean make[1]: Leaving directory '/build/python-pybedtools-0.8.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/python-pybedtools-0.8.0' python3 setup.py cythonize running cythonize Compiling pybedtools/cbedtools.pyx because it changed. Compiling pybedtools/featurefuncs.pyx because it changed. [1/2] Cythonizing pybedtools/cbedtools.pyx [2/2] Cythonizing pybedtools/featurefuncs.pyx /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-pybedtools-0.8.0/pybedtools/cbedtools.pxd tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-pybedtools-0.8.0/pybedtools/featurefuncs.pyx tree = Parsing.p_module(s, pxd, full_module_name) dh_auto_build I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/version.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/stats.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/settings.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/paths.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/parallel.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/logger.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/helpers.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/genome_registry.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/filenames.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/bedtool.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/__main__.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/__init__.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools creating /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test1.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/tfuncs.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_scripts.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_len_leak.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_iter.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_issues.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_helpers.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_gzip_support.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_contrib.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_cbedtools.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/regression_tests.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/__init__.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test creating /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigwig.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/venn_maker.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/plotting.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/long_range_interaction.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/intersection_matrix.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigbed.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/__init__.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib creating /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/venn_mpl.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/venn_gchart.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/py_ms_example.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/peak_pie.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/intron_exon_reads.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/intersection_matrix.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/annotate.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/__init__.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts creating /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/__init__.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data running egg_info creating pybedtools.egg-info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt writing manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' writing manifest file 'pybedtools.egg-info/SOURCES.txt' copying pybedtools/cbedtools.cpp -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/featurefuncs.cpp -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools creating /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include copying pybedtools/include/bedFile.cpp -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include copying pybedtools/include/bedFile.h -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include copying pybedtools/include/fileType.cpp -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include copying pybedtools/include/fileType.h -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.cpp -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.h -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include copying pybedtools/include/lineFileUtilities.h -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include copying pybedtools/test/data/y.bam -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/x.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/x.bam -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.c.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.b.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.vcf -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/v.vcf -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_tsses.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_peaks.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_bedpe.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test.fa.fai -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test.fa -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test2.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test1.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/snps.bed.gz -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.fastq -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.bam -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/reads.bam -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/multibamcov_test.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/mm9.bed12 -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/m1.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue_121.bam -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-problem.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-base.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg19.gff -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam.bai -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.othersort.bam -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.gff.gz -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.gff -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.bam -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam.bai -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam.bai -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/expand_test.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/exons.gff -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/democonfig.yaml -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/d.gff -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/c.gff -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/bedpe2.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/bedpe.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/b.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.links.html -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.igv_script -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/164.gtf -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/1000genomes-example.vcf -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data copying pybedtools/featurefuncs.pyx -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/cbedtools.pyx -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/_Window.pyx -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/cbedtools.pxd -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools copying pybedtools/test/gchart-expected.png -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/mpl-expected.png -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/prevent_open_file_regression -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_cases.yaml -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_merge215.yaml -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_merge227.yaml -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_shuffle215.yaml -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/test/test_shuffle227.yaml -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test copying pybedtools/scripts/pybedtools -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts creating /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/examples copying pybedtools/scripts/examples/pbt_plotting_example.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/examples running build_ext building 'pybedtools.cbedtools' extension creating build creating build/temp.linux-amd64-3.7 creating build/temp.linux-amd64-3.7/pybedtools creating build/temp.linux-amd64-3.7/pybedtools/include x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/cbedtools.cpp -o build/temp.linux-amd64-3.7/pybedtools/cbedtools.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/gzstream.cpp -o build/temp.linux-amd64-3.7/pybedtools/include/gzstream.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/fileType.cpp -o build/temp.linux-amd64-3.7/pybedtools/include/fileType.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/bedFile.cpp -o build/temp.linux-amd64-3.7/pybedtools/include/bedFile.o x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-3.7/pybedtools/cbedtools.o build/temp.linux-amd64-3.7/pybedtools/include/gzstream.o build/temp.linux-amd64-3.7/pybedtools/include/fileType.o build/temp.linux-amd64-3.7/pybedtools/include/bedFile.o -lstdc++ -lz -o /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/cbedtools.cpython-37m-x86_64-linux-gnu.so building 'pybedtools.featurefuncs' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/featurefuncs.cpp -o build/temp.linux-amd64-3.7/pybedtools/featurefuncs.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/gzstream.cpp -o build/temp.linux-amd64-3.7/pybedtools/include/gzstream.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/fileType.cpp -o build/temp.linux-amd64-3.7/pybedtools/include/fileType.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/bedFile.cpp -o build/temp.linux-amd64-3.7/pybedtools/include/bedFile.o x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-3.7/pybedtools/featurefuncs.o build/temp.linux-amd64-3.7/pybedtools/include/gzstream.o build/temp.linux-amd64-3.7/pybedtools/include/fileType.o build/temp.linux-amd64-3.7/pybedtools/include/bedFile.o -lstdc++ -lz -o /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/featurefuncs.cpython-37m-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.7 copying and adjusting pybedtools/scripts/venn_gchart.py -> build/scripts-3.7 copying and adjusting pybedtools/scripts/venn_mpl.py -> build/scripts-3.7 copying pybedtools/scripts/annotate.py -> build/scripts-3.7 copying and adjusting pybedtools/scripts/peak_pie.py -> build/scripts-3.7 copying and adjusting pybedtools/scripts/intersection_matrix.py -> build/scripts-3.7 copying and adjusting pybedtools/scripts/intron_exon_reads.py -> build/scripts-3.7 copying pybedtools/scripts/examples/pbt_plotting_example.py -> build/scripts-3.7 copying pybedtools/scripts/pybedtools -> build/scripts-3.7 changing mode of build/scripts-3.7/venn_gchart.py from 664 to 775 changing mode of build/scripts-3.7/venn_mpl.py from 664 to 775 changing mode of build/scripts-3.7/annotate.py from 664 to 775 changing mode of build/scripts-3.7/peak_pie.py from 664 to 775 changing mode of build/scripts-3.7/intersection_matrix.py from 664 to 775 changing mode of build/scripts-3.7/intron_exon_reads.py from 664 to 775 changing mode of build/scripts-3.7/pbt_plotting_example.py from 664 to 775 changing mode of build/scripts-3.7/pybedtools from 664 to 775 python3 setup.py develop --user running develop running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' writing manifest file 'pybedtools.egg-info/SOURCES.txt' running build_ext building 'pybedtools.cbedtools' extension creating build/temp.linux-x86_64-3.7 creating build/temp.linux-x86_64-3.7/pybedtools creating build/temp.linux-x86_64-3.7/pybedtools/include x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/cbedtools.cpp -o build/temp.linux-x86_64-3.7/pybedtools/cbedtools.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/gzstream.cpp -o build/temp.linux-x86_64-3.7/pybedtools/include/gzstream.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/fileType.cpp -o build/temp.linux-x86_64-3.7/pybedtools/include/fileType.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/bedFile.cpp -o build/temp.linux-x86_64-3.7/pybedtools/include/bedFile.o x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.7/pybedtools/cbedtools.o build/temp.linux-x86_64-3.7/pybedtools/include/gzstream.o build/temp.linux-x86_64-3.7/pybedtools/include/fileType.o build/temp.linux-x86_64-3.7/pybedtools/include/bedFile.o -lstdc++ -lz -o /build/python-pybedtools-0.8.0/pybedtools/cbedtools.cpython-37m-x86_64-linux-gnu.so building 'pybedtools.featurefuncs' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/featurefuncs.cpp -o build/temp.linux-x86_64-3.7/pybedtools/featurefuncs.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/gzstream.cpp -o build/temp.linux-x86_64-3.7/pybedtools/include/gzstream.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/fileType.cpp -o build/temp.linux-x86_64-3.7/pybedtools/include/fileType.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.7m -c pybedtools/include/bedFile.cpp -o build/temp.linux-x86_64-3.7/pybedtools/include/bedFile.o x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.7/pybedtools/featurefuncs.o build/temp.linux-x86_64-3.7/pybedtools/include/gzstream.o build/temp.linux-x86_64-3.7/pybedtools/include/fileType.o build/temp.linux-x86_64-3.7/pybedtools/include/bedFile.o -lstdc++ -lz -o /build/python-pybedtools-0.8.0/pybedtools/featurefuncs.cpython-37m-x86_64-linux-gnu.so Creating /build/python-pybedtools-0.8.0/fakehome/.local/lib/python3.7/site-packages/pybedtools.egg-link (link to .) Adding pybedtools 0.8.0 to easy-install.pth file Installing venn_gchart.py script to /build/python-pybedtools-0.8.0/fakehome/.local/bin Installing venn_mpl.py script to /build/python-pybedtools-0.8.0/fakehome/.local/bin Installing annotate.py script to /build/python-pybedtools-0.8.0/fakehome/.local/bin Installing peak_pie.py script to /build/python-pybedtools-0.8.0/fakehome/.local/bin Installing intersection_matrix.py script to /build/python-pybedtools-0.8.0/fakehome/.local/bin Installing intron_exon_reads.py script to /build/python-pybedtools-0.8.0/fakehome/.local/bin Installing pbt_plotting_example.py script to /build/python-pybedtools-0.8.0/fakehome/.local/bin Installing pybedtools script to /build/python-pybedtools-0.8.0/fakehome/.local/bin Installed /build/python-pybedtools-0.8.0 Processing dependencies for pybedtools==0.8.0 Searching for six==1.12.0 Best match: six 1.12.0 Adding six 1.12.0 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for pysam==0.15.2 Best match: pysam 0.15.2 Adding pysam 0.15.2 to easy-install.pth file Using /usr/lib/python3/dist-packages Finished processing dependencies for pybedtools==0.8.0 python3 setup.py build_sphinx running build_sphinx Running Sphinx v1.8.4 making output directory... [autosummary] generating autosummary for: 3-brief-examples.rst, FAQs.rst, autodoc_source.rst, changes.rst, create-a-bedtool-tutorial.rst, default-arguments.rst, each.rst, filtering.rst, flow-of-commands.rst, history.rst, ..., topical-create-a-bedtool.rst, topical-design-principles.rst, topical-documentation-contents.rst, topical-genome.rst, topical-iterators.rst, topical-low-level-ops.rst, topical-random.rst, topical-saving.rst, topical-wrapping.rst, tutorial-contents.rst [autosummary] generating autosummary for: /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.absolute_distance.rst, /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.all_hits.rst, /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.annotate.rst, /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.any_hits.rst, /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.as_intervalfile.rst, /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.at.rst, /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_bed.rst, /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_fastq.rst, /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bed6.rst, /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bedpe_to_bam.rst, ..., /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.helpers.get_tempdir.rst, /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.helpers.set_bedtools_path.rst, /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.helpers.set_tempdir.rst, /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.parallel.parallel_apply.rst, /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.scripts.annotate.rst, /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.scripts.intersection_matrix.rst, /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.scripts.intron_exon_reads.rst, /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.scripts.py_ms_example.rst, /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.scripts.venn_gchart.rst, /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.scripts.venn_mpl.rst building [mo]: targets for 0 po files that are out of date building [html]: targets for 48 source files that are out of date updating environment: 163 added, 0 changed, 0 removed reading sources... 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[100%] tutorial-contents /usr/lib/python3/dist-packages/numpydoc/docscrape.py:139: UserWarning: Unknown section Example warn("Unknown section %s" % key) /usr/lib/python3/dist-packages/numpydoc/docscrape.py:139: UserWarning: Unknown section Example warn("Unknown section %s" % key) /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.expand.rst:13: WARNING: Could not lex literal_block as "python". Highlighting skipped. /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.groupby.rst:32: WARNING: Could not lex literal_block as "python". Highlighting skipped. /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.overlap.rst:24: WARNING: Could not lex literal_block as "python". Highlighting skipped. /build/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.window_maker.rst:20: WARNING: Could not lex literal_block as "python". Highlighting skipped. /build/python-pybedtools-0.8.0/docs/source/default-arguments.rst:35: WARNING: Could not lex literal_block as "python". Highlighting skipped. /build/python-pybedtools-0.8.0/docs/source/topical-design-principles.rst:120: WARNING: unknown option: mergeBed -i /build/python-pybedtools-0.8.0/docs/source/topical-design-principles.rst:127: WARNING: unknown option: -i generating indices... genindex py-modindex highlighting module code... [ 7%] pybedtools highlighting module code... [ 15%] pybedtools.bedtool highlighting module code... [ 23%] pybedtools.cbedtools highlighting module code... [ 30%] pybedtools.contrib.bigbed highlighting module code... [ 38%] pybedtools.contrib.bigwig highlighting module code... [ 46%] pybedtools.contrib.intersection_matrix highlighting module code... [ 53%] pybedtools.contrib.long_range_interaction highlighting module code... [ 61%] pybedtools.contrib.plotting highlighting module code... 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The HTML pages are in build/sphinx/html. make[1]: Leaving directory '/build/python-pybedtools-0.8.0' debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-pybedtools-0.8.0' LICENSE.txt MANIFEST.in README.rst build build-docs.sh condatest.sh debian dev-requirements.txt docker docs ez_setup.py fakehome optional-requirements.txt pybedtools pybedtools.egg-info requirements.txt setup.cfg setup.py test-requirements.txt tools NOT TESTING LICENSE.txt MANIFEST.in README.rst build build-docs.sh condatest.sh debian dev-requirements.txt docker docs ez_setup.py fakehome optional-requirements.txt pybedtools pybedtools.egg-info requirements.txt setup.cfg setup.py test-requirements.txt tools make[1]: Leaving directory '/build/python-pybedtools-0.8.0' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3,sphinxdoc --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_installdirs -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/python-pybedtools-0.8.0' dh_auto_install I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/python-pybedtools-0.8.0/debian/python3-pybedtools running install running build running build_py copying pybedtools/version.py -> /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' writing manifest file 'pybedtools.egg-info/SOURCES.txt' running build_ext running build_scripts running install_lib creating /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr creating /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib creating /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7 creating /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages creating /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/version.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/featurefuncs.cpython-37m-x86_64-linux-gnu.so -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/cbedtools.cpython-37m-x86_64-linux-gnu.so -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/cbedtools.pxd -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/_Window.pyx -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/cbedtools.pyx -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/featurefuncs.pyx -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools creating /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/lineFileUtilities.h -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/gzstream.h -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/gzstream.cpp -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/fileType.h -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/fileType.cpp -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/bedFile.h -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/include/bedFile.cpp -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/include copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/featurefuncs.cpp -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/cbedtools.cpp -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools creating /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts creating /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/examples copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/examples/pbt_plotting_example.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/examples copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/pybedtools -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/__init__.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/annotate.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/intersection_matrix.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/intron_exon_reads.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/peak_pie.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/py_ms_example.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/venn_gchart.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/scripts/venn_mpl.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts creating /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/__init__.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/bigbed.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/intersection_matrix.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/long_range_interaction.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/plotting.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/venn_maker.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/contrib/bigwig.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib creating /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_shuffle227.yaml -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_shuffle215.yaml -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_merge227.yaml -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_merge215.yaml -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_cases.yaml -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/prevent_open_file_regression -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/mpl-expected.png -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/gchart-expected.png -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test creating /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/1000genomes-example.vcf -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/164.gtf -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/a.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/a.igv_script -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/a.links.html -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/b.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/bedpe.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/bedpe2.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/c.gff -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/d.gff -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/democonfig.yaml -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/exons.gff -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/expand_test.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.1.100.bam -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.1.100.bam.bai -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.50.200.bam -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.50.200.bam.bai -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.bam -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.gff -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.gff.gz -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.othersort.bam -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.sorted.bam -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/gdc.sorted.bam.bai -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/hg19.gff -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/hg38-base.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/hg38-problem.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/issue_121.bam -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/m1.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/mm9.bed12 -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/multibamcov_test.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/reads.bam -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/small.bam -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/small.fastq -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/snps.bed.gz -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/tag_test1.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/tag_test2.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/test.fa -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/test.fa.fai -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/test_bedpe.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/test_peaks.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/test_tsses.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/v.vcf -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/vcf-stderr-test.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/vcf-stderr-test.vcf -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/venn.b.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/venn.c.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/x.bam -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/x.bed -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/y.bam -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/data/__init__.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/__init__.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/regression_tests.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_cbedtools.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_contrib.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_gzip_support.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_helpers.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_issues.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_iter.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_len_leak.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test_scripts.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/tfuncs.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/test/test1.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/__init__.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/__main__.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/bedtool.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/filenames.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/genome_registry.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/helpers.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/logger.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/parallel.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/paths.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/settings.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools copying /build/python-pybedtools-0.8.0/.pybuild/cpython3_3.7_pybedtools/build/pybedtools/stats.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/version.py to version.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/examples/pbt_plotting_example.py to pbt_plotting_example.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/annotate.py to annotate.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/intersection_matrix.py to intersection_matrix.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/intron_exon_reads.py to intron_exon_reads.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/peak_pie.py to peak_pie.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/py_ms_example.py to py_ms_example.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/venn_gchart.py to venn_gchart.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/scripts/venn_mpl.py to venn_mpl.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/bigbed.py to bigbed.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/intersection_matrix.py to intersection_matrix.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/long_range_interaction.py to long_range_interaction.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/plotting.py to plotting.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/venn_maker.py to venn_maker.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/contrib/bigwig.py to bigwig.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/data/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/regression_tests.py to regression_tests.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_cbedtools.py to test_cbedtools.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_contrib.py to test_contrib.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_gzip_support.py to test_gzip_support.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_helpers.py to test_helpers.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_issues.py to test_issues.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_iter.py to test_iter.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_len_leak.py to test_len_leak.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test_scripts.py to test_scripts.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/tfuncs.py to tfuncs.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/test/test1.py to test1.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/__main__.py to __main__.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/bedtool.py to bedtool.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/filenames.py to filenames.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/genome_registry.py to genome_registry.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/helpers.py to helpers.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/logger.py to logger.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/parallel.py to parallel.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/paths.py to paths.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/settings.py to settings.cpython-37.pyc byte-compiling /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools/stats.py to stats.cpython-37.pyc running install_egg_info Copying pybedtools.egg-info to /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.7/dist-packages/pybedtools-0.8.0.egg-info Skipping SOURCES.txt running install_scripts creating /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.7/pybedtools -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.7/pbt_plotting_example.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.7/intron_exon_reads.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.7/intersection_matrix.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.7/peak_pie.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.7/annotate.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.7/venn_mpl.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.7/venn_gchart.py -> /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin changing mode of /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/pybedtools to 775 changing mode of /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/pbt_plotting_example.py to 775 changing mode of /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/intron_exon_reads.py to 775 changing mode of /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/intersection_matrix.py to 775 changing mode of /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/peak_pie.py to 775 changing mode of /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/annotate.py to 775 changing mode of /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/venn_mpl.py to 775 changing mode of /build/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/venn_gchart.py to 775 rm -f debian/python3-pybedtools/usr/lib/python3*/dist-packages/pybedtools/test/prevent_open_file_regression mkdir -p debian/pybedtools-bin/usr/bin mv debian/python3-pybedtools/usr/bin/* debian/pybedtools-bin/usr/bin/ rm -fr debian/python-pybedtools/usr/bin rm -fr debian/python3-pybedtools/usr/bin make[1]: Leaving directory '/build/python-pybedtools-0.8.0' dh_installdocs -O--buildsystem=pybuild dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_installman: Cannot find (any matches for) "debian/*.1" (tried in .) dh_systemd_enable -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_systemd_start -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python-pybedtools-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-pybedtools-doc' in '../python-pybedtools-doc_0.8.0-1_all.deb'. dpkg-deb: building package 'python3-pybedtools-dbgsym' in '../python3-pybedtools-dbgsym_0.8.0-1_amd64.deb'. dpkg-deb: building package 'pybedtools-bin' in '../pybedtools-bin_0.8.0-1_all.deb'. dpkg-deb: building package 'python3-pybedtools' in '../python3-pybedtools_0.8.0-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-pybedtools_0.8.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/132235/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/132235/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/132235 and its subdirectories I: Current time: Sun Jan 15 17:03:18 +14 2023 I: pbuilder-time-stamp: 1673751798