I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 10 12:00:50 +14 2021 I: pbuilder-time-stamp: 1639087250 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-biom-format_2.1.7+dfsg-2.dsc] I: copying [./python-biom-format_2.1.7+dfsg.orig.tar.xz] I: copying [./python-biom-format_2.1.7+dfsg-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Feb 14 11:26:21 2019 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-biom-format_2.1.7+dfsg-2.dsc dpkg-source: info: extracting python-biom-format in python-biom-format-2.1.7+dfsg dpkg-source: info: unpacking python-biom-format_2.1.7+dfsg.orig.tar.xz dpkg-source: info: unpacking python-biom-format_2.1.7+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying ignore_local_dist-packages.patch dpkg-source: info: applying no-web-adds.patch dpkg-source: info: applying fix_future_import.patch dpkg-source: info: applying enable_sloppy_sphinx_build.patch dpkg-source: info: applying sphinx_1.6.patch dpkg-source: info: applying sphinx.ext.pngmath.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/504312/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/504312/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/504312/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=9f9e113fc7ff4ca6bbe90daa77b24b67 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=504312 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.6J5utRMypk/pbuilderrc_izEB --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.6J5utRMypk/b2 --logfile b2/build.log python-biom-format_2.1.7+dfsg-2.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 5.10.0-9-amd64 #1 SMP Debian 5.10.70-1 (2021-09-30) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash -rwxr-xr-x 1 root root 109408 Mar 1 2019 date -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd -rwxr-xr-x 1 root root 93744 Mar 1 2019 df -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 35424 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln -rwxr-xr-x 1 root root 56760 Jul 27 2018 login -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 10 2019 more -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Dec 10 12:01 sh -> bash lrwxrwxrwx 1 root root 4 Nov 8 11:58 sh.distrib -> dash -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty -rwsr-xr-x 1 root root 63568 Jan 10 2019 su -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch -rwxr-xr-x 1 root root 35424 Mar 1 2019 true -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/504312/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), dh-python, cython, python-dev, python-numpy, python-scipy, python-h5py, help2man, python-click, python-cogent, python-future, python-nose, python-pandas, python-setuptools, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on cython; however: Package cython is not installed. pbuilder-satisfydepends-dummy depends on python-dev; however: Package python-dev is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python-scipy; however: Package python-scipy is not installed. pbuilder-satisfydepends-dummy depends on python-h5py; however: Package python-h5py is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on python-click; however: Package python-click is not installed. pbuilder-satisfydepends-dummy depends on python-cogent; however: Package python-cogent is not installed. pbuilder-satisfydepends-dummy depends on python-future; however: Package python-future is not installed. pbuilder-satisfydepends-dummy depends on python-nose; however: Package python-nose is not installed. pbuilder-satisfydepends-dummy depends on python-pandas; however: Package python-pandas is not installed. pbuilder-satisfydepends-dummy depends on python-setuptools; however: Package python-setuptools is not installed. pbuilder-satisfydepends-dummy depends on bash-completion; however: Package bash-completion is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-future; however: Package python3-future is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bash-completion{a} bsdmainutils{a} ca-certificates{a} cython{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libglib2.0-0{a} libhdf5-103{a} libicu63{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libpipeline1{a} libpng16-16{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} openssl{a} po-debconf{a} python{a} python-babel-localedata{a} python-backports.functools-lru-cache{a} python-click{a} python-cogent{a} python-colorama{a} python-configparser{a} python-cycler{a} python-dateutil{a} python-decorator{a} python-dev{a} python-future{a} python-h5py{a} python-kiwisolver{a} python-matplotlib{a} python-matplotlib2-data{a} python-minimal{a} python-nose{a} python-numpy{a} python-pandas{a} python-pandas-lib{a} python-pkg-resources{a} python-pyparsing{a} python-scipy{a} python-setuptools{a} python-six{a} python-subprocess32{a} python-tz{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-click{a} python3-colorama{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-docutils{a} python3-future{a} python3-h5py{a} python3-idna{a} python3-imagesize{a} python3-jinja2{a} python3-lib2to3{a} python3-markupsafe{a} python3-minimal{a} python3-nose{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-pygments{a} python3-pyparsing{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sphinx{a} python3-tz{a} python3-urllib3{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} ttf-bitstream-vera{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: blast2 bwa cd-hit clearcut curl dialign javascript-common libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libpaper-utils lynx muscle python-bs4 python-html5lib python-lxml python-numexpr python-openpyxl python-pil python-statsmodels python-tables python-tk python-xlrd python-xlwt python3-bs4 python3-html5lib python3-lxml python3-matplotlib python3-numexpr python3-pil python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 156 newly installed, 0 to remove and 0 not upgraded. Need to get 182 MB of archives. After unpacking 563 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u7 [1539 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 sgml-base all 1.29 [14.8 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 bash-completion all 1:2.8-6 [208 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1d-0+deb10u7 [845 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 cython amd64 0.29.2-2 [1365 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 cython3 amd64 0.29.2-2 [1392 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 dh-python all 3.20190308 [99.3 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 docutils-common all 0.14+dfsg-4 [167 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 fonts-lyx all 2.3.2-1 [199 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 help2man amd64 1.47.8 [177 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libaec0 amd64 1.0.2-1 [20.1 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 libexpat1-dev amd64 2.2.6-2+deb10u1 [153 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u2 [380 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 libsz2 amd64 1.0.2-1 [6676 B] Get: 78 http://deb.debian.org/debian buster/main amd64 libhdf5-103 amd64 1.10.4+repack-10 [1325 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 libjs-underscore all 1.9.1~dfsg-1+deb10u1 [100.0 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 libjs-sphinxdoc all 1.8.4-1 [95.9 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 libpython2.7 amd64 2.7.16-2+deb10u1 [1036 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 libpython2.7-dev amd64 2.7.16-2+deb10u1 [31.6 MB] Get: 86 http://deb.debian.org/debian buster/main amd64 libpython2-dev amd64 2.7.16-1 [20.9 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 libpython-dev amd64 2.7.16-1 [20.9 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 libpython3.7 amd64 3.7.3-2+deb10u3 [1498 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 libpython3.7-dev amd64 3.7.3-2+deb10u3 [48.4 MB] Get: 90 http://deb.debian.org/debian buster/main amd64 libpython3-dev amd64 3.7.3-1 [20.1 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 libpython3-all-dev amd64 3.7.3-1 [1068 B] Get: 92 http://deb.debian.org/debian buster/main amd64 python-babel-localedata all 2.6.0+dfsg.1-1 [4083 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 python-backports.functools-lru-cache all 1.5-3 [6704 B] Get: 94 http://deb.debian.org/debian buster/main amd64 python-colorama all 0.3.7-1 [25.7 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 python-click all 7.0-1 [73.5 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 python-numpy amd64 1:1.16.2-1 [2101 kB] Get: 98 http://deb.debian.org/debian buster/main amd64 python-numpy amd64 1:1.16.2-1 [2101 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 python-six all 1.12.0-1 [15.7 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 python-dateutil all 2.7.3-3 [76.8 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 ttf-bitstream-vera all 1.10-8 [352 kB] Get: 102 http://deb.debian.org/debian buster/main amd64 python-matplotlib2-data all 2.2.3-6 [4124 kB] Get: 103 http://deb.debian.org/debian buster/main amd64 python-pyparsing all 2.2.0+dfsg1-2 [89.5 kB] Get: 104 http://deb.debian.org/debian buster/main amd64 python-tz all 2019.1-1 [33.6 kB] Get: 105 http://deb.debian.org/debian buster/main amd64 python-cycler all 0.10.0-1 [7448 B] Get: 106 http://deb.debian.org/debian buster/main amd64 python-kiwisolver amd64 1.0.1-2+b1 [67.3 kB] Get: 107 http://deb.debian.org/debian buster/main amd64 python-subprocess32 amd64 3.5.3-1 [29.9 kB] Get: 108 http://deb.debian.org/debian buster/main amd64 python-matplotlib amd64 2.2.3-6 [5073 kB] Get: 109 http://deb.debian.org/debian buster/main amd64 python-cogent amd64 1.9-14 [2483 kB] Get: 110 http://deb.debian.org/debian buster/main amd64 python-configparser all 3.5.0b2-1 [59.2 kB] Get: 111 http://deb.debian.org/debian buster/main amd64 python-decorator all 4.3.0-1.1 [14.4 kB] Get: 112 http://deb.debian.org/debian buster/main amd64 python2.7-dev amd64 2.7.16-2+deb10u1 [294 kB] Get: 113 http://deb.debian.org/debian buster/main amd64 python2-dev amd64 2.7.16-1 [1212 B] Get: 114 http://deb.debian.org/debian buster/main amd64 python-dev amd64 2.7.16-1 [1192 B] Get: 115 http://deb.debian.org/debian buster/main amd64 python-future all 0.16.0-1 [348 kB] Get: 116 http://deb.debian.org/debian buster/main amd64 python-h5py amd64 2.8.0-3 [693 kB] Get: 117 http://deb.debian.org/debian buster/main amd64 python-nose all 1.3.7-4 [132 kB] Get: 118 http://deb.debian.org/debian buster/main amd64 python-pandas-lib amd64 0.23.3+dfsg-3 [3430 kB] Get: 119 http://deb.debian.org/debian buster/main amd64 python-pandas all 0.23.3+dfsg-3 [1750 kB] Get: 120 http://deb.debian.org/debian buster/main amd64 python-scipy amd64 1.1.0-7 [10.1 MB] Get: 121 http://deb.debian.org/debian buster/main amd64 python-setuptools all 40.8.0-1 [382 kB] Get: 122 http://deb.debian.org/debian buster/main amd64 python3-alabaster all 0.7.8-1 [18.4 kB] Get: 123 http://deb.debian.org/debian buster/main amd64 python3-all amd64 3.7.3-1 [1068 B] Get: 124 http://deb.debian.org/debian buster/main amd64 python3.7-dev amd64 3.7.3-2+deb10u3 [510 kB] Get: 125 http://deb.debian.org/debian buster/main amd64 python3-dev amd64 3.7.3-1 [1264 B] Get: 126 http://deb.debian.org/debian buster/main amd64 python3-all-dev amd64 3.7.3-1 [1064 B] Get: 127 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 128 http://deb.debian.org/debian buster/main amd64 python3-tz all 2019.1-1 [27.1 kB] Get: 129 http://deb.debian.org/debian buster/main amd64 python3-babel all 2.6.0+dfsg.1-1 [96.7 kB] Get: 130 http://deb.debian.org/debian buster/main amd64 python3-certifi all 2018.8.24-1 [140 kB] Get: 131 http://deb.debian.org/debian buster/main amd64 python3-chardet all 3.0.4-3 [80.5 kB] Get: 132 http://deb.debian.org/debian buster/main amd64 python3-colorama all 0.3.7-1 [18.1 kB] Get: 133 http://deb.debian.org/debian buster/main amd64 python3-click all 7.0-1 [73.6 kB] Get: 134 http://deb.debian.org/debian buster/main amd64 python3-six all 1.12.0-1 [15.7 kB] Get: 135 http://deb.debian.org/debian buster/main amd64 python3-dateutil all 2.7.3-3 [64.5 kB] Get: 136 http://deb.debian.org/debian buster/main amd64 python3-decorator all 4.3.0-1.1 [14.5 kB] Get: 137 http://deb.debian.org/debian buster/main amd64 python3-roman all 2.0.0-3 [8768 B] Get: 138 http://deb.debian.org/debian buster/main amd64 python3-docutils all 0.14+dfsg-4 [378 kB] Get: 139 http://deb.debian.org/debian buster/main amd64 python3-future all 0.16.0-1 [346 kB] Get: 140 http://deb.debian.org/debian buster/main amd64 python3-numpy amd64 1:1.16.2-1 [2119 kB] Get: 141 http://deb.debian.org/debian buster/main amd64 python3-h5py amd64 2.8.0-3 [1015 kB] Get: 142 http://deb.debian.org/debian buster/main amd64 python3-idna all 2.6-1 [34.3 kB] Get: 143 http://deb.debian.org/debian buster/main amd64 python3-imagesize all 1.0.0-1 [4960 B] Get: 144 http://deb.debian.org/debian buster/main amd64 python3-markupsafe amd64 1.1.0-1 [14.8 kB] Get: 145 http://deb.debian.org/debian buster/main amd64 python3-jinja2 all 2.10-2 [106 kB] Get: 146 http://deb.debian.org/debian buster/main amd64 python3-nose all 1.3.7-4 [132 kB] Get: 147 http://deb.debian.org/debian buster/main amd64 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get: 148 http://deb.debian.org/debian buster/main amd64 python3-packaging all 19.0-1 [20.5 kB] Get: 149 http://deb.debian.org/debian buster/main amd64 python3-pandas-lib amd64 0.23.3+dfsg-3 [3475 kB] Get: 150 http://deb.debian.org/debian buster/main amd64 python3-pandas all 0.23.3+dfsg-3 [1750 kB] Get: 151 http://deb.debian.org/debian buster/main amd64 python3-pygments all 2.3.1+dfsg-1+deb10u2 [594 kB] Get: 152 http://deb.debian.org/debian buster/main amd64 python3-urllib3 all 1.24.1-1 [97.1 kB] Get: 153 http://deb.debian.org/debian buster/main amd64 python3-requests all 2.21.0-1 [66.9 kB] Get: 154 http://deb.debian.org/debian buster/main amd64 python3-scipy amd64 1.1.0-7 [10.0 MB] Get: 155 http://deb.debian.org/debian buster/main amd64 python3-setuptools all 40.8.0-1 [306 kB] Get: 156 http://deb.debian.org/debian buster/main amd64 sphinx-common all 1.8.4-1 [500 kB] Get: 157 http://deb.debian.org/debian buster/main amd64 python3-sphinx all 1.8.4-1 [481 kB] Fetched 181 MB in 7min 0s (432 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20658 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_amd64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... 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Preparing to unpack .../libpython3.7-minimal_3.7.3-2+deb10u3_amd64.deb ... Unpacking libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u3) ... Setting up libssl1.1:amd64 (1.1.1d-0+deb10u7) ... Setting up libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u3) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Unpacking python3-sphinx (1.8.4-1) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up mime-support (3.62) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up fonts-lyx (2.3.2-1) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libaec0:amd64 (1.0.2-1) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up python-babel-localedata (2.6.0+dfsg.1-1) ... Setting up autotools-dev (20180224.1) ... Setting up libexpat1-dev:amd64 (2.2.6-2+deb10u1) ... Setting up bash-completion (1:2.8-6) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up autopoint (0.19.8.1-9) ... 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Setting up xml-core (0.18+nmu1) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up libpython2.7:amd64 (2.7.16-2+deb10u1) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libpython2.7-dev:amd64 (2.7.16-2+deb10u1) ... Setting up gettext (0.19.8.1-9) ... Setting up libpython3-dev:amd64 (3.7.3-1) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (1.1.0-1) ... Setting up python2 (2.7.16-1) ... 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Setting up python3-docutils (0.14+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-sphinx (1.8.4-1) ... update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package hostname: Name or service not known I: Running cd /build/python-biom-format-2.1.7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-biom-format_2.1.7+dfsg-2_source.changes dpkg-buildpackage: info: source package python-biom-format dpkg-buildpackage: info: source version 2.1.7+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python2,python3,bash-completion,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean --test-nose -i python{version} -p 2.7 I: pybuild base:217: python2.7 setup.py clean running clean removing '/build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it pybuild --clean --test-nose -i python{version} -p 3.7 I: pybuild base:217: python3.7 setup.py clean running clean removing '/build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python-biom-format.substvars debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars debian/biom-format-tools.substvars debian/files rm -fr -- debian/python-biom-format/ debian/tmp/ debian/python3-biom-format/ debian/python-biom-format-doc/ debian/biom-format-tools/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build --with python2,python3,bash-completion,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure --test-nose -i python{version} -p 2.7 I: pybuild base:217: python2.7 setup.py config running config pybuild --configure --test-nose -i python{version} -p 3.7 I: pybuild base:217: python3.7 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/python-biom-format-2.1.7+dfsg' # arch USE_CYTHON=true dh_auto_build pybuild --build --test-nose -i python{version} -p 2.7 I: pybuild base:217: /usr/bin/python setup.py build /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-biom-format-2.1.7+dfsg/biom/_filter.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-biom-format-2.1.7+dfsg/biom/_subsample.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-biom-format-2.1.7+dfsg/biom/_transform.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling biom/_filter.pyx because it changed. Compiling biom/_transform.pyx because it changed. Compiling biom/_subsample.pyx because it changed. [1/3] Cythonizing biom/_filter.pyx [2/3] Cythonizing biom/_subsample.pyx [3/3] Cythonizing biom/_transform.pyx running build running build_py creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom copying biom/__init__.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom copying biom/util.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom copying biom/table.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom copying biom/parse.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom copying biom/exception.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom copying biom/err.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests copying biom/tests/test_util.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests copying biom/tests/test_table.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests copying biom/tests/test_parse.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests copying biom/tests/test_err.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests copying biom/tests/long_lines.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests copying biom/tests/__init__.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli copying biom/cli/util.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli copying biom/cli/uc_processor.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli copying biom/cli/table_validator.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli copying biom/cli/table_summarizer.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli copying biom/cli/table_subsetter.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli copying biom/cli/table_normalizer.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli copying biom/cli/table_ids.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli copying biom/cli/table_head.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli copying biom/cli/table_converter.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli copying biom/cli/metadata_adder.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli copying biom/cli/installation_informer.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli copying biom/cli/__init__.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/__init__.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_validate_table.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_uc_processor.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_normalizer.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_converter.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_summarize_table.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_subset_table.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_show_install_info.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_add_metadata.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/__init__.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli running egg_info creating biom_format.egg-info writing requirements to biom_format.egg-info/requires.txt writing biom_format.egg-info/PKG-INFO writing top-level names to biom_format.egg-info/top_level.txt writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution writing manifest file 'biom_format.egg-info/SOURCES.txt' copying biom/_filter.c -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom copying biom/_filter.pyx -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom copying biom/_subsample.c -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom copying biom/_subsample.pyx -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom copying biom/_transform.c -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom copying biom/_transform.pyx -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/assets copying biom/assets/exercise_api.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/assets copying biom/assets/exercise_cli.sh -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/assets creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables copying biom/tests/test_data/bad_table.txt -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/bad_table.txt.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/empty.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/no-contents.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.json -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_data running build_ext building 'biom._filter' extension creating build creating build/temp.linux-amd64-2.7 creating build/temp.linux-amd64-2.7/biom x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_filter.c -o build/temp.linux-amd64-2.7/biom/_filter.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_filter.c:632: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/biom/_filter.o -o /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_filter.so building 'biom._transform' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_transform.c -o build/temp.linux-amd64-2.7/biom/_transform.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_transform.c:632: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/biom/_transform.o -o /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_transform.so building 'biom._subsample' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_subsample.c -o build/temp.linux-amd64-2.7/biom/_subsample.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_subsample.c:632: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/biom/_subsample.o -o /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_subsample.so pybuild --build --test-nose -i python{version} -p 3.7 I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/__init__.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/util.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/table.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/parse.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/exception.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/err.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests copying biom/tests/test_util.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests copying biom/tests/test_table.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests copying biom/tests/test_parse.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests copying biom/tests/test_err.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests copying biom/tests/long_lines.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests copying biom/tests/__init__.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/util.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/uc_processor.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/table_validator.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/table_summarizer.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/table_subsetter.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/table_normalizer.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/table_ids.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/table_head.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/table_converter.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/metadata_adder.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/installation_informer.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli copying biom/cli/__init__.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/__init__.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_validate_table.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_uc_processor.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_normalizer.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_converter.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_summarize_table.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_subset_table.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_show_install_info.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_add_metadata.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/__init__.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli running egg_info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution writing manifest file 'biom_format.egg-info/SOURCES.txt' copying biom/_filter.c -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/_filter.pyx -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/_subsample.c -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/_subsample.pyx -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/_transform.c -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom copying biom/_transform.pyx -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets copying biom/assets/exercise_api.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets copying biom/assets/exercise_cli.sh -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables copying biom/tests/test_data/bad_table.txt -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/bad_table.txt.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/empty.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/no-contents.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.json -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data running build_ext building 'biom._filter' extension creating build/temp.linux-amd64-3.7 creating build/temp.linux-amd64-3.7/biom x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_filter.c -o build/temp.linux-amd64-3.7/biom/_filter.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_filter.c:632: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-3.7/biom/_filter.o -o /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_filter.cpython-37m-x86_64-linux-gnu.so building 'biom._transform' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_transform.c -o build/temp.linux-amd64-3.7/biom/_transform.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_transform.c:632: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-3.7/biom/_transform.o -o /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_transform.cpython-37m-x86_64-linux-gnu.so building 'biom._subsample' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_subsample.c -o build/temp.linux-amd64-3.7/biom/_subsample.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_subsample.c:632: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-3.7/biom/_subsample.o -o /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_subsample.cpython-37m-x86_64-linux-gnu.so # indep: PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html Running Sphinx v1.8.4 making output directory... [autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst Failed to import 'biom.table': no module named biom.table Failed to import 'biom': no module named biom building [mo]: targets for 0 po files that are out of date building [html]: targets for 12 source files that are out of date updating environment: 12 added, 0 changed, 0 removed reading sources... [ 8%] BIOM_LICENSE reading sources... [ 16%] documentation/adding_metadata reading sources... [ 25%] documentation/biom_conversion reading sources... [ 33%] documentation/biom_format reading sources... [ 41%] documentation/format_versions/biom-1.0 reading sources... [ 50%] documentation/format_versions/biom-2.0 reading sources... [ 58%] documentation/format_versions/biom-2.1 reading sources... [ 66%] documentation/index reading sources... [ 75%] documentation/quick_usage_examples reading sources... [ 83%] documentation/summarizing_biom_tables reading sources... [ 91%] documentation/table_objects reading sources... [100%] index WARNING: autodoc: failed to import module 'biom'; the following exception was raised: No module named 'biom._filter' WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised: No module named 'biom._filter' looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 8%] BIOM_LICENSE writing output... [ 16%] documentation/adding_metadata writing output... [ 25%] documentation/biom_conversion writing output... [ 33%] documentation/biom_format writing output... [ 41%] documentation/format_versions/biom-1.0 writing output... [ 50%] documentation/format_versions/biom-2.0 writing output... [ 58%] documentation/format_versions/biom-2.1 writing output... [ 66%] documentation/index writing output... [ 75%] documentation/quick_usage_examples writing output... [ 83%] documentation/summarizing_biom_tables writing output... [ 91%] documentation/table_objects writing output... [100%] index /build/python-biom-format-2.1.7+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated /build/python-biom-format-2.1.7+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated /build/python-biom-format-2.1.7+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated /build/python-biom-format-2.1.7+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated generating indices... writing additional pages... search copying images... [100%] _static/biom-format.png copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 6 warnings. The HTML pages are in build/html. PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man Running Sphinx v1.8.4 making output directory... [autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst Failed to import 'biom.table': no module named biom.table Failed to import 'biom': no module named biom building [mo]: targets for 0 po files that are out of date building [man]: all manpages updating environment: 12 added, 0 changed, 0 removed reading sources... [ 8%] BIOM_LICENSE reading sources... [ 16%] documentation/adding_metadata reading sources... [ 25%] documentation/biom_conversion reading sources... [ 33%] documentation/biom_format reading sources... [ 41%] documentation/format_versions/biom-1.0 reading sources... [ 50%] documentation/format_versions/biom-2.0 reading sources... [ 58%] documentation/format_versions/biom-2.1 reading sources... [ 66%] documentation/index reading sources... [ 75%] documentation/quick_usage_examples reading sources... [ 83%] documentation/summarizing_biom_tables reading sources... [ 91%] documentation/table_objects reading sources... [100%] index WARNING: autodoc: failed to import module 'biom'; the following exception was raised: No module named 'biom._filter' WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised: No module named 'biom._filter' looking for now-outdated files... none found pickling environment... done checking consistency... done writing... biom.1 { documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE } build succeeded, 2 warnings. The manual pages are in build/man. make[1]: Leaving directory '/build/python-biom-format-2.1.7+dfsg' rm -f debian/biom-format-tools.debhelper.log debian/python-biom-format-doc.debhelper.log debian/python-biom-format.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-biom-format-2.1.7+dfsg' cp -a examples /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build cp -a examples /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build dh_auto_test pybuild --test --test-nose -i python{version} -p 2.7 I: pybuild base:217: cd /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build; python2.7 -m nose -v Correctly adds observation metadata without casting it. ... ok Correctly adds observation metadata with casting. ... ok Correctly adds sample metadata without casting it. ... ok Correctly adds sample metadata with casting. ... ok test_default (biom.tests.test_cli.test_show_install_info.TestShowInstallInfo) ... ok Correctly raises politically correct error upon invalid input. ... ok Correctly subsets observations in a table. ... ok Correctly subsets samples in a hdf5 table ... /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/table.py:3981: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future. for start, end in indptr_indices) /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/table.py:3983: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future. for start, end in indptr_indices) ok Correctly subsets samples in a table. ... ok Correctly subsets samples in a hdf5 table ... ok TableSummarizer functions as expected ... ok TableSummarizer functions as expected with qualitative=True ... ok Correctly converts biom to classic. ... ok Correctly converts biom to classic with metadata renaming. ... ok Correctly converts classic to biom. ... ok Correctly converts classic to biom with metadata. ... ok Correctly converts json to HDF5 changing the observation metadata ... ok Correctly converts json to HDF5 changing the sample metadata ... ok test_bad_inputs (biom.tests.test_cli.test_table_normalizer.TableNormalizerTests) ... ok test_basic (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok test_basic_w_mapping (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok test_rep_set_missing_id (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok test_rep_set_no_mapping (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok test_uc (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok test_uc_w_mapping (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok Correctly invalidates a table that is... invalid. ... ok Test an invalid HDF5 table ... ok test_is_int (biom.tests.test_cli.test_validate_table.TableValidatorTests) ... ok Correctly validates a table that is indeed... valid. ... ok validates table:columns: fields ... ok validates data: fields ... ok Make sure we have a datetime stamp ... ok Takes a dense matrix field and validates ... ok Should match format string ... ok validates format url ... ok Should have some string for generated by ... ok Test a valid HDF5 table ... ok test_valid_hdf5_metadata_v200 (biom.tests.test_cli.test_validate_table.TableValidatorTests) ... ok test_valid_hdf5_metadata_v210 (biom.tests.test_cli.test_validate_table.TableValidatorTests) ... ok Make sure we have a valid matrix type ... ok Make sure we have a valid matrix type ... ok Can be nullable or an object ... ok Should just work. ... ok validates rows: field ... ok validates shape information ... ok Takes a sparse matrix field and validates ... ok Should be valid table type ... ok test_test_empty (biom.tests.test_err.ErrModeTests) ... ok test_test_obsdup (biom.tests.test_err.ErrModeTests) ... ok test_test_obsmdsize (biom.tests.test_err.ErrModeTests) ... ok test_test_obssize (biom.tests.test_err.ErrModeTests) ... ok test_test_sampdup (biom.tests.test_err.ErrModeTests) ... ok test_test_sampmdsize (biom.tests.test_err.ErrModeTests) ... ok test_test_sampsize (biom.tests.test_err.ErrModeTests) ... ok test_contains (biom.tests.test_err.ErrorProfileTests) ... ok test_getcall (biom.tests.test_err.ErrorProfileTests) ... ok test_handle_error (biom.tests.test_err.ErrorProfileTests) ... ok test_register_unregister (biom.tests.test_err.ErrorProfileTests) ... ok test_setcall (biom.tests.test_err.ErrorProfileTests) ... ok test_state (biom.tests.test_err.ErrorProfileTests) ... ok test_test (biom.tests.test_err.ErrorProfileTests) ... ok test_errcheck (biom.tests.test_err.SupportTests) ... ok test_errstate (biom.tests.test_err.SupportTests) ... ok test_geterr (biom.tests.test_err.SupportTests) ... ok test_geterrcall (biom.tests.test_err.SupportTests) ... ok test_seterr (biom.tests.test_err.SupportTests) ... ok test_seterrcall (biom.tests.test_err.SupportTests) ... ok test_empty_metadata_inconsistent_handling (biom.tests.test_parse.ParseTests) ... ok get a generatedby string ... ok MetadataMap functions as expected ... ok MetadataMap functions as expected w user-provided header ... ok MetadataMap functions as expected w process_fns ... ok test the biom otu table parser ... ok tests for parse_biom_table when we do not have h5py ... ok Make sure we can parse a HDF5 table through the same loader ... ok test the biom table parser subsetting ... ok tests for parse_biom_table when we have h5py ... ok empty uc file returns empty Table ... ok invalid query sequence identifier detected ... ok single library seed observed ... ok single new seed observed ... ok new and library seeds observed ... ok multiple new seeds observed ... ok sample id with underscores is correctly processed ... ok Yield tables binned by observation metadata ... ok Yield tables binned by sample metadata ... ok test_collapse_median (biom.tests.test_table.SparseTableTests) ... ok Collapse observations by arbitrary metadata ... ok Collapse observations by arbitary metadata ... ok Collapse observations by 1-M metadata using divide mode ... ok Collapse observations by arbitary metadata ... ok Collapse samples by arbitrary metadata ... ok Collapse samples by arbitary metadata ... ok Collapse samples by 1-M metadata using divide mode ... ok Collapse samples by arbitary metadata ... ok Should convert other to sparse type ... ok test_copy_data (biom.tests.test_table.SparseTableTests) ... ok test_copy_ids (biom.tests.test_table.SparseTableTests) ... ok test_copy_metadata (biom.tests.test_table.SparseTableTests) ... ok test_data (biom.tests.test_table.SparseTableTests) ... ok check equality between tables ... ok test_data_sparse (biom.tests.test_table.SparseTableTests) ... ok Print out self in a delimited form ... ok sparse equality ... ok Parses a classic table ... ok test_extract_data_from_tsv_badvalue_complaint (biom.tests.test_table.SparseTableTests) ... ok test_filter_general_observation (biom.tests.test_table.SparseTableTests) ... ok test_filter_general_sample (biom.tests.test_table.SparseTableTests) ... ok test_filter_id_state (biom.tests.test_table.SparseTableTests) ... ok test_filter_observations_id (biom.tests.test_table.SparseTableTests) ... ok test_filter_observations_invert (biom.tests.test_table.SparseTableTests) ... ok test_filter_observations_metadata (biom.tests.test_table.SparseTableTests) ... ok test_filter_observations_remove_everything (biom.tests.test_table.SparseTableTests) ... ok test_filter_out_full_table (biom.tests.test_table.SparseTableTests) ... ok test_filter_return_type (biom.tests.test_table.SparseTableTests) ... ok test_filter_sample_id (biom.tests.test_table.SparseTableTests) ... ok test_filter_sample_invert (biom.tests.test_table.SparseTableTests) ... ok test_filter_sample_metadata (biom.tests.test_table.SparseTableTests) ... ok test_filter_sample_remove_everything (biom.tests.test_table.SparseTableTests) ... ok test_filter_table_with_zeros (biom.tests.test_table.SparseTableTests) ... ok test_filter_using_list_of_ids (biom.tests.test_table.SparseTableTests) ... ok test_from_json_issue_697 (biom.tests.test_table.SparseTableTests) ... ok Test correctly computes density of table. ... ok test_identify_bad_value (biom.tests.test_table.SparseTableTests) ... ok Should iterate over samples ... ok test_iter_data_dense (biom.tests.test_table.SparseTableTests) ... ok test_iter_data_sparse (biom.tests.test_table.SparseTableTests) ... ok Iterate over observations of sparse matrix ... ok Iterates data by observations ... ok Iterates data by observations from a single sample. ... ok Iterates observations ... ok Should iterate pairwise over samples ... ok Should iterate pairwise over samples ... ok Should iterate pairwise over samples ... ok Should iterate pairwise over samples ... ok Iterate over samples of sparse matrix ... ok Iterates data by samples ... ok Iterates data by samples with a single observation. ... ok Iterates samples ... ok Merge two tables ... ok Return a list of nonzero positions ... ok Returns nonzero counts over an axis ... ok Returns nonzero counts over an axis ... ok test_nonzero_csc_bug (biom.tests.test_table.SparseTableTests) ... ok normalize observations by sample ... ok normalize sample by observation ... ok test_other_spmatrix_type (biom.tests.test_table.SparseTableTests) ... ok test_pa (biom.tests.test_table.SparseTableTests) ... ok test_pa_with_neg (biom.tests.test_table.SparseTableTests) ... ok test_pa_works_if_something_has_been_zeroed (biom.tests.test_table.SparseTableTests) ... ok rank observations by sample ... ok rank observations by sample with alt method ... ok rank samples by observation ... ok Reduce method ... ok table sorted by a function and provided axis ... ok sorts tables by arbitrary order ... ok test_subsample (biom.tests.test_table.SparseTableTests) ... ok test_subsample_by_id (biom.tests.test_table.SparseTableTests) ... ok test_subsample_by_id_observations_bug (biom.tests.test_table.SparseTableTests) ... ok test_subsample_byid_with_replacement (biom.tests.test_table.SparseTableTests) ... ok subsample would except when if metadata were present ... ok test_subsample_with_replacement_n (biom.tests.test_table.SparseTableTests) ... ok As in scikit-bio. Given a vector of observations, the total number of ... ok As in scikit-bio. Given a vector of observations, the total number of ... ok Test of sum! ... ok Should convert a self styled vector to numpy type ... ok Get a BIOM format string for a dense table of floats ... ok Get a BIOM format string for a dense table of floats ... ok Get a BIOM format string for a dense table of integers ... ok Get a BIOM format string for a dense table of integers ... ok test_to_json_empty (biom.tests.test_table.SparseTableTests) ... ok Get a BIOM format string for a sparse table of floats ... ok Get a BIOM format string for a sparse table of floats ... ok Get a BIOM format string for a sparse table of integers ... ok Get a BIOM format string for a sparse table of integers ... ok Transform axis by arbitrary function ... ok test_transform_return_type (biom.tests.test_table.SparseTableTests) ... ok test_transform_sample (biom.tests.test_table.SparseTableTests) ... ok Should transpose a sparse table ... ok ids are updated as expected ... ok test_update_ids_cache_bug (biom.tests.test_table.SparseTableTests) ... ok ids are updated as expected ... ok test_align_to_no_overlap (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_autodetect_both (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_autodetect_observation (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_autodetect_sample (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_autodetect_vary_values (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_both (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_both_no_overlap (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_observation (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_observation_no_overlap (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_sample (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_sample_no_overlap (biom.tests.test_table.SupportTests) ... ok test_concat_different_order (biom.tests.test_table.SupportTests) ... ok test_concat_empty (biom.tests.test_table.SupportTests) ... ok test_concat_multiple (biom.tests.test_table.SupportTests) ... ok test_concat_no_metadata_bug (biom.tests.test_table.SupportTests) ... ok test_concat_observations (biom.tests.test_table.SupportTests) ... ok test_concat_pad_on_subset (biom.tests.test_table.SupportTests) ... ok test_concat_raise_overlap (biom.tests.test_table.SupportTests) ... ok test_concat_samples (biom.tests.test_table.SupportTests) ... ok test_concat_table_type (biom.tests.test_table.SupportTests) ... ok test_head (biom.tests.test_table.SupportTests) ... ok test_head_bounded (biom.tests.test_table.SupportTests) ... ok test_head_overstep (biom.tests.test_table.SupportTests) ... ok test_head_zero_or_neg (biom.tests.test_table.SupportTests) ... ok returns a dict for list lookups ... ok prefer x ... ok test_remove_empty_both (biom.tests.test_table.SupportTests) ... /usr/lib/python2.7/dist-packages/scipy/sparse/compressed.py:747: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient. SparseEfficiencyWarning) ok test_remove_empty_identity (biom.tests.test_table.SupportTests) ... ok test_remove_empty_obs (biom.tests.test_table.SupportTests) ... ok test_remove_empty_sample (biom.tests.test_table.SupportTests) ... ok Make sure a TableException can be raised ... ok beat the table sparsely to death ... ok beat the table sparsely to death ... ok beat the table sparsely to death ... ok beat the table sparsely to death ... ok beat the table sparsely to death ... ok convert (values, (row, col)) to scipy ... ok Take a dict and convert to sparse ... ok Take a list of dicts and condense down to a single dict ... ok convert [[row,col,value], ...] to scipy ... ok lists of nparrays to sparse ... ok list of lil_matrix to sparse ... ok Convert nparray to sparse ... ok Convert to expected sparse types ... ok add group metadata works correctly ... ok add group metadata works with existing metadata ... ok add_sample_metadata functions with single md entry ... ok add_sample_metadata functions with existing metadata ... ok add_metadata functions with more than one md entry ... ok add_sample_metadata functions with more than one md entry ... ok test_all_keys_dropped (biom.tests.test_table.TableTests) ... ok Cast metadata objects to defaultdict to support default values ... ok Properly converts ScipySparseMat vectors to dense numpy repr. ... ok test_data_property (biom.tests.test_table.TableTests) ... ok test_del_metadata_badaxis (biom.tests.test_table.TableTests) ... ok test_del_metadata_defaults (biom.tests.test_table.TableTests) ... ok test_del_metadata_empty_list (biom.tests.test_table.TableTests) ... ok test_del_metadata_full (biom.tests.test_table.TableTests) ... ok test_del_metadata_idempotent (biom.tests.test_table.TableTests) ... ok test_del_metadata_jagged (biom.tests.test_table.TableTests) ... ok test_del_metadata_keys_none_observation (biom.tests.test_table.TableTests) ... ok test_del_metadata_keys_none_sample (biom.tests.test_table.TableTests) ... ok test_del_metadata_keys_none_whole (biom.tests.test_table.TableTests) ... ok test_del_metadata_multiple_keys (biom.tests.test_table.TableTests) ... ok test_del_metadata_nomd (biom.tests.test_table.TableTests) ... ok test_del_metadata_partial (biom.tests.test_table.TableTests) ... ok What's your type? ... ok Test whether two matrices are equal. ... ok Verify ValueError raised! ... ok Parse a hdf5 formatted BIOM table ... ok test_from_hdf5_custom_parsers (biom.tests.test_table.TableTests) ... ok Parse a hdf5 formatted BIOM table w/o metadata ... ok HDF5 biom parse successfully loads an empty table ... ok test_from_hdf5_issue_731 (biom.tests.test_table.TableTests) ... ok test_from_hdf5_non_hdf5_file_or_group (biom.tests.test_table.TableTests) ... ok Parse a observation subset of a hdf5 formatted BIOM table ... ok Parse a observation subset of a hdf5 formatted BIOM table ... ok Parse a sample subset of a hdf5 formatted BIOM table ... ok Parse a sample subset of a hdf5 formatted BIOM table ... ok hdf5 biom table parse throws error with invalid parameters ... ok test_from_tsv (biom.tests.test_table.TableTests) ... ok test_from_tsv_dense (biom.tests.test_table.TableTests) ... ok Test grabbing a column from the matrix. ... ok Test grabbing a row from the matrix. ... ok Return the value located in the matrix by the ids ... ok getitem should work as expeceted ... ok Test getting an element from the matrix. ... ok Handles invalid input ... ok Returns the observation group metadata ... ok Returns the sample group metadata ... ok Index all the ids!!! ... ok Correctly handles invalid input. ... ok returns the observation index ... ok returns the sample index ... ok to_sparse in constructor should be triggered ... ok Combine ids, intersection ... ok returns true if empty ... ok test_length (biom.tests.test_table.TableTests) ... ok test_max_observation (biom.tests.test_table.TableTests) ... ok test_max_sample (biom.tests.test_table.TableTests) ... ok test_max_whole (biom.tests.test_table.TableTests) ... ok Correctly handles invalid input. ... ok returns the observation metadata ... ok returns the observation metadata for a given id ... ok Return the sample metadata ... ok returns the sample metadata for a given id ... ok test_metadata_to_dataframe (biom.tests.test_table.TableTests) ... ok test_metadata_to_dataframe_badaxis (biom.tests.test_table.TableTests) ... ok test_metadata_to_dataframe_nomd (biom.tests.test_table.TableTests) ... ok test_metadata_to_dataframe_uneven_list_metadata (biom.tests.test_table.TableTests) ... ok test_min_observation (biom.tests.test_table.TableTests) ... ok test_min_sample (biom.tests.test_table.TableTests) ... ok test_min_whole (biom.tests.test_table.TableTests) ... ok Test whether two matrices are not equal. ... ok What is your NNZ? ... ok test_nnz_issue_727 (biom.tests.test_table.TableTests) ... ok Verify observation exist! ... ok __repr__ method of biom.table.Table ... ok Verify samples exist! ... ok What kind of shape are you in? ... ok test_to_dataframe (biom.tests.test_table.TableTests) ... ok test_to_dataframe_dense (biom.tests.test_table.TableTests) ... ok Write a file ... ok test_to_hdf5_custom_formatters (biom.tests.test_table.TableTests) ... ok Successfully writes an empty OTU table in HDF5 format ... ok Successfully writes an empty OTU table in HDF5 format ... ok test_to_hdf5_general_fallback_to_list (biom.tests.test_table.TableTests) ... ok test_to_hdf5_inconsistent_metadata_categories_observation (biom.tests.test_table.TableTests) ... ok test_to_hdf5_inconsistent_metadata_categories_sample (biom.tests.test_table.TableTests) ... ok test_to_hdf5_malformed_taxonomy (biom.tests.test_table.TableTests) ... ok test_to_hdf5_missing_metadata_observation (biom.tests.test_table.TableTests) ... ok test_to_hdf5_missing_metadata_sample (biom.tests.test_table.TableTests) ... ok Print out self in a delimited form ... ok Combine unique ids, union ... ok Make sure the metadata is sane (including obs/sample ids) ... ok test_biom_open_empty (biom.tests.test_util.UtilTests) ... ok test_biom_open_hdf5 (biom.tests.test_util.UtilTests) ... ok test_biom_open_hdf5_no_h5py (biom.tests.test_util.UtilTests) ... SKIP: Skipping test: test_biom_open_hdf5_no_h5py: Can only be tested without H5PY test_biom_open_json (biom.tests.test_util.UtilTests) ... ok compute_counts_per_sample_stats functions as expected ... ok test_compute_counts_per_sample_stats_empty (biom.tests.test_util.UtilTests) ... ok compute_counts_per_sample_stats functions as expected ... ok flatten should remove one level of nesting from nested sequences ... ok flatten should not change non-nested sequences (except to list) ... ok test_generate_subsamples (biom.tests.test_util.UtilTests) ... ok Getting the biom project directory functions as expected. ... ok test_is_hdf5_file (biom.tests.test_util.UtilTests) ... ok test_load_classic (biom.tests.test_util.UtilTests) ... ok test_load_table_gzip_unicode (biom.tests.test_util.UtilTests) ... ok test_load_table_unicode (biom.tests.test_util.UtilTests) ... ok natsort should perform numeric comparisons on strings ... ok parse_biom_config_files functions as expected. ... ok Make sure we have the expected md5 with varied input types ... ok unzip(items) should be the inverse of zip(*items) ... ok ---------------------------------------------------------------------- Ran 336 tests in 10.805s OK (SKIP=1) pybuild --test --test-nose -i python{version} -p 3.7 I: pybuild base:217: cd /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build; python3.7 -m nose -v Correctly adds observation metadata without casting it. ... ok Correctly adds observation metadata with casting. ... ok Correctly adds sample metadata without casting it. ... ok Correctly adds sample metadata with casting. ... ok test_default (biom.tests.test_cli.test_show_install_info.TestShowInstallInfo) ... ok Correctly raises politically correct error upon invalid input. ... ok Correctly subsets observations in a table. ... ok Correctly subsets samples in a hdf5 table ... /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/table.py:3981: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future. for start, end in indptr_indices) /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/table.py:3983: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future. for start, end in indptr_indices) ok Correctly subsets samples in a table. ... ok Correctly subsets samples in a hdf5 table ... ok TableSummarizer functions as expected ... ok TableSummarizer functions as expected with qualitative=True ... ok Correctly converts biom to classic. ... ok Correctly converts biom to classic with metadata renaming. ... ok Correctly converts classic to biom. ... ok Correctly converts classic to biom with metadata. ... ok Correctly converts json to HDF5 changing the observation metadata ... ok Correctly converts json to HDF5 changing the sample metadata ... ok test_bad_inputs (biom.tests.test_cli.test_table_normalizer.TableNormalizerTests) ... ok test_basic (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok test_basic_w_mapping (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok test_rep_set_missing_id (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok test_rep_set_no_mapping (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok test_uc (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok test_uc_w_mapping (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok Correctly invalidates a table that is... invalid. ... ok Test an invalid HDF5 table ... ok test_is_int (biom.tests.test_cli.test_validate_table.TableValidatorTests) ... ok Correctly validates a table that is indeed... valid. ... ok validates table:columns: fields ... ok validates data: fields ... ok Make sure we have a datetime stamp ... ok Takes a dense matrix field and validates ... ok Should match format string ... ok validates format url ... ok Should have some string for generated by ... ok Test a valid HDF5 table ... ok test_valid_hdf5_metadata_v200 (biom.tests.test_cli.test_validate_table.TableValidatorTests) ... ok test_valid_hdf5_metadata_v210 (biom.tests.test_cli.test_validate_table.TableValidatorTests) ... ok Make sure we have a valid matrix type ... ok Make sure we have a valid matrix type ... ok Can be nullable or an object ... ok Should just work. ... ok validates rows: field ... ok validates shape information ... ok Takes a sparse matrix field and validates ... ok Should be valid table type ... ok test_test_empty (biom.tests.test_err.ErrModeTests) ... ok test_test_obsdup (biom.tests.test_err.ErrModeTests) ... ok test_test_obsmdsize (biom.tests.test_err.ErrModeTests) ... ok test_test_obssize (biom.tests.test_err.ErrModeTests) ... ok test_test_sampdup (biom.tests.test_err.ErrModeTests) ... ok test_test_sampmdsize (biom.tests.test_err.ErrModeTests) ... ok test_test_sampsize (biom.tests.test_err.ErrModeTests) ... ok test_contains (biom.tests.test_err.ErrorProfileTests) ... ok test_getcall (biom.tests.test_err.ErrorProfileTests) ... ok test_handle_error (biom.tests.test_err.ErrorProfileTests) ... ok test_register_unregister (biom.tests.test_err.ErrorProfileTests) ... ok test_setcall (biom.tests.test_err.ErrorProfileTests) ... ok test_state (biom.tests.test_err.ErrorProfileTests) ... ok test_test (biom.tests.test_err.ErrorProfileTests) ... ok test_errcheck (biom.tests.test_err.SupportTests) ... ok test_errstate (biom.tests.test_err.SupportTests) ... ok test_geterr (biom.tests.test_err.SupportTests) ... ok test_geterrcall (biom.tests.test_err.SupportTests) ... ok test_seterr (biom.tests.test_err.SupportTests) ... ok test_seterrcall (biom.tests.test_err.SupportTests) ... ok test_empty_metadata_inconsistent_handling (biom.tests.test_parse.ParseTests) ... ok get a generatedby string ... ok MetadataMap functions as expected ... ok MetadataMap functions as expected w user-provided header ... ok MetadataMap functions as expected w process_fns ... ok test the biom otu table parser ... ok tests for parse_biom_table when we do not have h5py ... ok Make sure we can parse a HDF5 table through the same loader ... ok test the biom table parser subsetting ... ok tests for parse_biom_table when we have h5py ... ok empty uc file returns empty Table ... ok invalid query sequence identifier detected ... ok single library seed observed ... ok single new seed observed ... ok new and library seeds observed ... ok multiple new seeds observed ... ok sample id with underscores is correctly processed ... ok Yield tables binned by observation metadata ... ok Yield tables binned by sample metadata ... ok test_collapse_median (biom.tests.test_table.SparseTableTests) ... ok Collapse observations by arbitrary metadata ... ok Collapse observations by arbitary metadata ... ok Collapse observations by 1-M metadata using divide mode ... ok Collapse observations by arbitary metadata ... ok Collapse samples by arbitrary metadata ... ok Collapse samples by arbitary metadata ... ok Collapse samples by 1-M metadata using divide mode ... ok Collapse samples by arbitary metadata ... ok Should convert other to sparse type ... ok test_copy_data (biom.tests.test_table.SparseTableTests) ... ok test_copy_ids (biom.tests.test_table.SparseTableTests) ... ok test_copy_metadata (biom.tests.test_table.SparseTableTests) ... ok test_data (biom.tests.test_table.SparseTableTests) ... ok check equality between tables ... ok test_data_sparse (biom.tests.test_table.SparseTableTests) ... ok Print out self in a delimited form ... ok sparse equality ... ok Parses a classic table ... ok test_extract_data_from_tsv_badvalue_complaint (biom.tests.test_table.SparseTableTests) ... ok test_filter_general_observation (biom.tests.test_table.SparseTableTests) ... ok test_filter_general_sample (biom.tests.test_table.SparseTableTests) ... ok test_filter_id_state (biom.tests.test_table.SparseTableTests) ... ok test_filter_observations_id (biom.tests.test_table.SparseTableTests) ... ok test_filter_observations_invert (biom.tests.test_table.SparseTableTests) ... ok test_filter_observations_metadata (biom.tests.test_table.SparseTableTests) ... ok test_filter_observations_remove_everything (biom.tests.test_table.SparseTableTests) ... ok test_filter_out_full_table (biom.tests.test_table.SparseTableTests) ... ok test_filter_return_type (biom.tests.test_table.SparseTableTests) ... ok test_filter_sample_id (biom.tests.test_table.SparseTableTests) ... ok test_filter_sample_invert (biom.tests.test_table.SparseTableTests) ... ok test_filter_sample_metadata (biom.tests.test_table.SparseTableTests) ... ok test_filter_sample_remove_everything (biom.tests.test_table.SparseTableTests) ... ok test_filter_table_with_zeros (biom.tests.test_table.SparseTableTests) ... ok test_filter_using_list_of_ids (biom.tests.test_table.SparseTableTests) ... ok test_from_json_issue_697 (biom.tests.test_table.SparseTableTests) ... ok Test correctly computes density of table. ... ok test_identify_bad_value (biom.tests.test_table.SparseTableTests) ... ok Should iterate over samples ... ok test_iter_data_dense (biom.tests.test_table.SparseTableTests) ... ok test_iter_data_sparse (biom.tests.test_table.SparseTableTests) ... ok Iterate over observations of sparse matrix ... ok Iterates data by observations ... ok Iterates data by observations from a single sample. ... ok Iterates observations ... ok Should iterate pairwise over samples ... ok Should iterate pairwise over samples ... ok Should iterate pairwise over samples ... ok Should iterate pairwise over samples ... ok Iterate over samples of sparse matrix ... ok Iterates data by samples ... ok Iterates data by samples with a single observation. ... ok Iterates samples ... ok Merge two tables ... ok Return a list of nonzero positions ... ok Returns nonzero counts over an axis ... ok Returns nonzero counts over an axis ... ok test_nonzero_csc_bug (biom.tests.test_table.SparseTableTests) ... ok normalize observations by sample ... ok normalize sample by observation ... ok test_other_spmatrix_type (biom.tests.test_table.SparseTableTests) ... ok test_pa (biom.tests.test_table.SparseTableTests) ... ok test_pa_with_neg (biom.tests.test_table.SparseTableTests) ... ok test_pa_works_if_something_has_been_zeroed (biom.tests.test_table.SparseTableTests) ... ok rank observations by sample ... ok rank observations by sample with alt method ... ok rank samples by observation ... ok Reduce method ... ok table sorted by a function and provided axis ... ok sorts tables by arbitrary order ... ok test_subsample (biom.tests.test_table.SparseTableTests) ... ok test_subsample_by_id (biom.tests.test_table.SparseTableTests) ... ok test_subsample_by_id_observations_bug (biom.tests.test_table.SparseTableTests) ... ok test_subsample_byid_with_replacement (biom.tests.test_table.SparseTableTests) ... ok subsample would except when if metadata were present ... ok test_subsample_with_replacement_n (biom.tests.test_table.SparseTableTests) ... ok As in scikit-bio. Given a vector of observations, the total number of ... ok As in scikit-bio. Given a vector of observations, the total number of ... ok Test of sum! ... ok Should convert a self styled vector to numpy type ... ok Get a BIOM format string for a dense table of floats ... ok Get a BIOM format string for a dense table of floats ... ok Get a BIOM format string for a dense table of integers ... ok Get a BIOM format string for a dense table of integers ... ok test_to_json_empty (biom.tests.test_table.SparseTableTests) ... ok Get a BIOM format string for a sparse table of floats ... ok Get a BIOM format string for a sparse table of floats ... ok Get a BIOM format string for a sparse table of integers ... ok Get a BIOM format string for a sparse table of integers ... ok Transform axis by arbitrary function ... ok test_transform_return_type (biom.tests.test_table.SparseTableTests) ... ok test_transform_sample (biom.tests.test_table.SparseTableTests) ... ok Should transpose a sparse table ... ok ids are updated as expected ... ok test_update_ids_cache_bug (biom.tests.test_table.SparseTableTests) ... ok ids are updated as expected ... ok test_align_to_no_overlap (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_autodetect_both (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_autodetect_observation (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_autodetect_sample (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_autodetect_vary_values (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_both (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_both_no_overlap (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_observation (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_observation_no_overlap (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_sample (biom.tests.test_table.SupportTests) ... ok test_align_to_overlap_sample_no_overlap (biom.tests.test_table.SupportTests) ... ok test_concat_different_order (biom.tests.test_table.SupportTests) ... ok test_concat_empty (biom.tests.test_table.SupportTests) ... ok test_concat_multiple (biom.tests.test_table.SupportTests) ... ok test_concat_no_metadata_bug (biom.tests.test_table.SupportTests) ... ok test_concat_observations (biom.tests.test_table.SupportTests) ... ok test_concat_pad_on_subset (biom.tests.test_table.SupportTests) ... ok test_concat_raise_overlap (biom.tests.test_table.SupportTests) ... ok test_concat_samples (biom.tests.test_table.SupportTests) ... ok test_concat_table_type (biom.tests.test_table.SupportTests) ... ok test_head (biom.tests.test_table.SupportTests) ... ok test_head_bounded (biom.tests.test_table.SupportTests) ... ok test_head_overstep (biom.tests.test_table.SupportTests) ... ok test_head_zero_or_neg (biom.tests.test_table.SupportTests) ... ok returns a dict for list lookups ... ok prefer x ... ok test_remove_empty_both (biom.tests.test_table.SupportTests) ... /usr/lib/python3/dist-packages/scipy/sparse/compressed.py:747: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient. SparseEfficiencyWarning) ok test_remove_empty_identity (biom.tests.test_table.SupportTests) ... ok test_remove_empty_obs (biom.tests.test_table.SupportTests) ... ok test_remove_empty_sample (biom.tests.test_table.SupportTests) ... ok Make sure a TableException can be raised ... ok beat the table sparsely to death ... ok beat the table sparsely to death ... ok beat the table sparsely to death ... ok beat the table sparsely to death ... ok beat the table sparsely to death ... ok convert (values, (row, col)) to scipy ... ok Take a dict and convert to sparse ... ok Take a list of dicts and condense down to a single dict ... ok convert [[row,col,value], ...] to scipy ... ok lists of nparrays to sparse ... ok list of lil_matrix to sparse ... ok Convert nparray to sparse ... ok Convert to expected sparse types ... ok add group metadata works correctly ... ok add group metadata works with existing metadata ... ok add_sample_metadata functions with single md entry ... ok add_sample_metadata functions with existing metadata ... ok add_metadata functions with more than one md entry ... ok add_sample_metadata functions with more than one md entry ... ok test_all_keys_dropped (biom.tests.test_table.TableTests) ... ok Cast metadata objects to defaultdict to support default values ... ok Properly converts ScipySparseMat vectors to dense numpy repr. ... ok test_data_property (biom.tests.test_table.TableTests) ... ok test_del_metadata_badaxis (biom.tests.test_table.TableTests) ... ok test_del_metadata_defaults (biom.tests.test_table.TableTests) ... ok test_del_metadata_empty_list (biom.tests.test_table.TableTests) ... ok test_del_metadata_full (biom.tests.test_table.TableTests) ... ok test_del_metadata_idempotent (biom.tests.test_table.TableTests) ... ok test_del_metadata_jagged (biom.tests.test_table.TableTests) ... ok test_del_metadata_keys_none_observation (biom.tests.test_table.TableTests) ... ok test_del_metadata_keys_none_sample (biom.tests.test_table.TableTests) ... ok test_del_metadata_keys_none_whole (biom.tests.test_table.TableTests) ... ok test_del_metadata_multiple_keys (biom.tests.test_table.TableTests) ... ok test_del_metadata_nomd (biom.tests.test_table.TableTests) ... ok test_del_metadata_partial (biom.tests.test_table.TableTests) ... ok What's your type? ... ok Test whether two matrices are equal. ... ok Verify ValueError raised! ... ok Parse a hdf5 formatted BIOM table ... ok test_from_hdf5_custom_parsers (biom.tests.test_table.TableTests) ... ok Parse a hdf5 formatted BIOM table w/o metadata ... ok HDF5 biom parse successfully loads an empty table ... ok test_from_hdf5_issue_731 (biom.tests.test_table.TableTests) ... ok test_from_hdf5_non_hdf5_file_or_group (biom.tests.test_table.TableTests) ... ok Parse a observation subset of a hdf5 formatted BIOM table ... /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/table.py:3981: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future. for start, end in indptr_indices) /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/table.py:3983: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future. for start, end in indptr_indices) ok Parse a observation subset of a hdf5 formatted BIOM table ... ok Parse a sample subset of a hdf5 formatted BIOM table ... ok Parse a sample subset of a hdf5 formatted BIOM table ... ok hdf5 biom table parse throws error with invalid parameters ... ok test_from_tsv (biom.tests.test_table.TableTests) ... ok test_from_tsv_dense (biom.tests.test_table.TableTests) ... ok Test grabbing a column from the matrix. ... ok Test grabbing a row from the matrix. ... ok Return the value located in the matrix by the ids ... ok getitem should work as expeceted ... ok Test getting an element from the matrix. ... ok Handles invalid input ... ok Returns the observation group metadata ... ok Returns the sample group metadata ... ok Index all the ids!!! ... ok Correctly handles invalid input. ... ok returns the observation index ... ok returns the sample index ... ok to_sparse in constructor should be triggered ... ok Combine ids, intersection ... ok returns true if empty ... ok test_length (biom.tests.test_table.TableTests) ... ok test_max_observation (biom.tests.test_table.TableTests) ... ok test_max_sample (biom.tests.test_table.TableTests) ... ok test_max_whole (biom.tests.test_table.TableTests) ... ok Correctly handles invalid input. ... ok returns the observation metadata ... ok returns the observation metadata for a given id ... ok Return the sample metadata ... ok returns the sample metadata for a given id ... ok test_metadata_to_dataframe (biom.tests.test_table.TableTests) ... ok test_metadata_to_dataframe_badaxis (biom.tests.test_table.TableTests) ... ok test_metadata_to_dataframe_nomd (biom.tests.test_table.TableTests) ... ok test_metadata_to_dataframe_uneven_list_metadata (biom.tests.test_table.TableTests) ... ok test_min_observation (biom.tests.test_table.TableTests) ... ok test_min_sample (biom.tests.test_table.TableTests) ... ok test_min_whole (biom.tests.test_table.TableTests) ... ok Test whether two matrices are not equal. ... ok What is your NNZ? ... ok test_nnz_issue_727 (biom.tests.test_table.TableTests) ... /usr/lib/python3/dist-packages/scipy/sparse/compressed.py:747: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient. SparseEfficiencyWarning) ok Verify observation exist! ... ok __repr__ method of biom.table.Table ... ok Verify samples exist! ... ok What kind of shape are you in? ... ok test_to_dataframe (biom.tests.test_table.TableTests) ... ok test_to_dataframe_dense (biom.tests.test_table.TableTests) ... ok Write a file ... ok test_to_hdf5_custom_formatters (biom.tests.test_table.TableTests) ... ok Successfully writes an empty OTU table in HDF5 format ... ok Successfully writes an empty OTU table in HDF5 format ... ok test_to_hdf5_general_fallback_to_list (biom.tests.test_table.TableTests) ... ok test_to_hdf5_inconsistent_metadata_categories_observation (biom.tests.test_table.TableTests) ... ok test_to_hdf5_inconsistent_metadata_categories_sample (biom.tests.test_table.TableTests) ... ok test_to_hdf5_malformed_taxonomy (biom.tests.test_table.TableTests) ... ok test_to_hdf5_missing_metadata_observation (biom.tests.test_table.TableTests) ... ok test_to_hdf5_missing_metadata_sample (biom.tests.test_table.TableTests) ... ok Print out self in a delimited form ... ok Combine unique ids, union ... ok Make sure the metadata is sane (including obs/sample ids) ... ok test_biom_open_empty (biom.tests.test_util.UtilTests) ... ok test_biom_open_hdf5 (biom.tests.test_util.UtilTests) ... ok test_biom_open_hdf5_no_h5py (biom.tests.test_util.UtilTests) ... SKIP: Skipping test: test_biom_open_hdf5_no_h5py: Can only be tested without H5PY test_biom_open_json (biom.tests.test_util.UtilTests) ... ok compute_counts_per_sample_stats functions as expected ... ok test_compute_counts_per_sample_stats_empty (biom.tests.test_util.UtilTests) ... ok compute_counts_per_sample_stats functions as expected ... ok flatten should remove one level of nesting from nested sequences ... ok flatten should not change non-nested sequences (except to list) ... ok test_generate_subsamples (biom.tests.test_util.UtilTests) ... ok Getting the biom project directory functions as expected. ... ok test_is_hdf5_file (biom.tests.test_util.UtilTests) ... ok test_load_classic (biom.tests.test_util.UtilTests) ... ok test_load_table_gzip_unicode (biom.tests.test_util.UtilTests) ... ok test_load_table_unicode (biom.tests.test_util.UtilTests) ... ok natsort should perform numeric comparisons on strings ... ok parse_biom_config_files functions as expected. ... ok Make sure we have the expected md5 with varied input types ... ok unzip(items) should be the inverse of zip(*items) ... ok ---------------------------------------------------------------------- Ran 336 tests in 8.501s OK (SKIP=1) make[1]: Leaving directory '/build/python-biom-format-2.1.7+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python2,python3,bash-completion,sphinxdoc --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python-biom-format.substvars debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars debian/biom-format-tools.substvars rm -fr -- debian/.debhelper/generated/python-biom-format/ debian/python-biom-format/ debian/tmp/ debian/.debhelper/generated/python3-biom-format/ debian/python3-biom-format/ debian/.debhelper/generated/python-biom-format-doc/ debian/python-biom-format-doc/ debian/.debhelper/generated/biom-format-tools/ debian/biom-format-tools/ rm -f debian/biom-format-tools.debhelper.log debian/python-biom-format-doc.debhelper.log debian/python-biom-format.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/python-biom-format-2.1.7+dfsg' dh_auto_install install -d /build/python-biom-format-2.1.7\+dfsg/debian/tmp pybuild --install --test-nose -i python{version} -p 2.7 --dest-dir /build/python-biom-format-2.1.7\+dfsg/debian/tmp I: pybuild base:217: /usr/bin/python setup.py install --root /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format running install running build running build_py running egg_info writing requirements to biom_format.egg-info/requires.txt writing biom_format.egg-info/PKG-INFO writing top-level names to biom_format.egg-info/top_level.txt writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution writing manifest file 'biom_format.egg-info/SOURCES.txt' running build_ext running install_lib creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7 creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/examples copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/examples/sam_md.txt -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/examples copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/examples/rich_sparse_otu_table_hdf5.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/examples copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/examples/rich_sparse_otu_table.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/examples copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/examples/obs_md.txt -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/examples copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/examples/min_sparse_otu_table_hdf5.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/examples copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/examples/min_sparse_otu_table.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/examples creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/parse.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/err.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/util.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/exception.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/table.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/__init__.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_subsample.so -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_transform.so -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_filter.so -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/assets copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/assets/exercise_cli.sh -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/assets copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/assets/exercise_api.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/assets copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_transform.pyx -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_transform.c -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_subsample.pyx -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_subsample.c -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_filter.pyx -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_filter.c -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/uc_processor.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_validator.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_ids.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_head.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_normalizer.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_subsetter.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/installation_informer.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_converter.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/util.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/metadata_adder.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_summarizer.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/__init__.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/__init__.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/installation_informer.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/metadata_adder.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_converter.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_head.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_ids.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_normalizer.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_subsetter.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_summarizer.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_validator.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/uc_processor.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/util.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_util.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_table.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_parse.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_err.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/long_lines.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/__init__.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_validate_table.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_uc_processor.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_table_normalizer.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_table_converter.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_summarize_table.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_subset_table.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_show_install_info.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_add_metadata.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/__init__.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_data/test.json -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_data/test.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/__init__.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_add_metadata.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_show_install_info.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_subset_table.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_summarize_table.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_table_converter.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_table_normalizer.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_uc_processor.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_validate_table.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data/__init__.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data/test.json.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data/test.json -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data/test.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data/no-contents.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data/empty.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data/bad_table.txt.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data/bad_table.txt -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data/__init__.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/__init__.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/long_lines.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_err.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_parse.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_table.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_util.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/err.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/exception.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/parse.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/table.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/util.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/__init__.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/assets/exercise_api.py to exercise_api.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/__init__.py to __init__.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/installation_informer.py to installation_informer.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/metadata_adder.py to metadata_adder.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_converter.py to table_converter.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_head.py to table_head.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_ids.py to table_ids.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_normalizer.py to table_normalizer.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_subsetter.py to table_subsetter.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_summarizer.py to table_summarizer.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_validator.py to table_validator.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/uc_processor.py to uc_processor.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/util.py to util.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/__init__.py to __init__.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data/__init__.py to __init__.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/__init__.py to __init__.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/long_lines.py to long_lines.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_err.py to test_err.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_parse.py to test_parse.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_table.py to test_table.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_util.py to test_util.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/err.py to err.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/exception.py to exception.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/parse.py to parse.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/table.py to table.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/util.py to util.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/__init__.py to __init__.pyc running install_egg_info Copying biom_format.egg-info to /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom_format-2.1.7.egg-info Skipping SOURCES.txt running install_scripts Installing biom script to /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/bin I: pybuild pybuild:298: dh_numpy (grep -a -s -v python:Depends debian/python-biom-format.substvars; echo "python:Depends=python-numpy (>= 1:1.16.0~rc1), python-numpy-abi9") > debian/python-biom-format.substvars.new mv debian/python-biom-format.substvars.new debian/python-biom-format.substvars (grep -a -s -v python:Depends debian/python3-biom-format.substvars; echo "python:Depends=python-numpy (>= 1:1.16.0~rc1), python-numpy-abi9") > debian/python3-biom-format.substvars.new mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars (grep -a -s -v python:Depends debian/python-biom-format-doc.substvars; echo python:Depends=python-numpy) > debian/python-biom-format-doc.substvars.new mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars (grep -a -s -v python:Depends debian/biom-format-tools.substvars; echo "python:Depends=python-numpy (>= 1:1.16.0~rc1), python-numpy-abi9") > debian/biom-format-tools.substvars.new mv debian/biom-format-tools.substvars.new debian/biom-format-tools.substvars pybuild --install --test-nose -i python{version} -p 3.7 --dest-dir /build/python-biom-format-2.1.7\+dfsg/debian/tmp I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format running install running build running build_py running egg_info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution writing manifest file 'biom_format.egg-info/SOURCES.txt' running build_ext running install_lib creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7 creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/examples/sam_md.txt -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/examples/rich_sparse_otu_table_hdf5.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/examples/rich_sparse_otu_table.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/examples/obs_md.txt -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/examples/min_sparse_otu_table_hdf5.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/examples/min_sparse_otu_table.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__pycache__/parse.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__pycache__/err.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__pycache__/util.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__pycache__/exception.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__pycache__/table.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__pycache__/__init__.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_subsample.cpython-37m-x86_64-linux-gnu.so -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_transform.cpython-37m-x86_64-linux-gnu.so -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_filter.cpython-37m-x86_64-linux-gnu.so -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/assets copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets/exercise_cli.sh -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/assets copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets/exercise_api.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/assets copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_transform.pyx -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_transform.c -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_subsample.pyx -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_subsample.c -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_filter.pyx -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_filter.c -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/uc_processor.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_validator.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_ids.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_head.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_normalizer.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_subsetter.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/installation_informer.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_converter.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/util.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/metadata_adder.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_summarizer.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/__init__.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__init__.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/installation_informer.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/metadata_adder.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_converter.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_head.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_ids.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_normalizer.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_subsetter.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_summarizer.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_validator.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/uc_processor.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/util.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__pycache__/test_util.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__pycache__/test_table.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__pycache__/test_parse.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__pycache__/test_err.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__pycache__/long_lines.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__pycache__/__init__.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__ creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_validate_table.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_uc_processor.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_table_normalizer.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_table_converter.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_summarize_table.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_subset_table.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_show_install_info.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_add_metadata.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/__init__.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__ creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data/test.json -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data/test.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__init__.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_add_metadata.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_show_install_info.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_subset_table.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_summarize_table.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_table_converter.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_table_normalizer.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_uc_processor.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_validate_table.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/__pycache__/__init__.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data/__pycache__ copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/test.json.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/test.json -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/test.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/no-contents.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/empty.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/bad_table.txt.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/bad_table.txt -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/__init__.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__init__.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/long_lines.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_err.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_parse.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_table.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_util.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/err.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/exception.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/parse.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/table.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/util.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__init__.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/assets/exercise_api.py to exercise_api.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/installation_informer.py to installation_informer.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_converter.py to table_converter.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_head.py to table_head.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_ids.py to table_ids.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_validator.py to table_validator.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/uc_processor.py to uc_processor.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/util.py to util.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/long_lines.py to long_lines.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_err.py to test_err.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_parse.py to test_parse.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_table.py to test_table.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_util.py to test_util.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/err.py to err.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/exception.py to exception.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/parse.py to parse.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/table.py to table.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/util.py to util.cpython-37.pyc byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__init__.py to __init__.cpython-37.pyc running install_egg_info Copying biom_format.egg-info to /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom_format-2.1.7.egg-info Skipping SOURCES.txt running install_scripts Installing biom script to /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/bin I: pybuild pybuild:298: dh_numpy3 (grep -a -s -v python3:Depends debian/python-biom-format.substvars; echo "python3:Depends=python3-numpy (>= 1:1.16.0~rc1), python3-numpy-abi9") > debian/python-biom-format.substvars.new mv debian/python-biom-format.substvars.new debian/python-biom-format.substvars (grep -a -s -v python3:Depends debian/python3-biom-format.substvars; echo "python3:Depends=python3-numpy (>= 1:1.16.0~rc1), python3-numpy-abi9") > debian/python3-biom-format.substvars.new mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars (grep -a -s -v python3:Depends debian/python-biom-format-doc.substvars; echo python3:Depends=python3-numpy) > debian/python-biom-format-doc.substvars.new mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars (grep -a -s -v python3:Depends debian/biom-format-tools.substvars; echo "python3:Depends=python3-numpy (>= 1:1.16.0~rc1), python3-numpy-abi9") > debian/biom-format-tools.substvars.new mv debian/biom-format-tools.substvars.new debian/biom-format-tools.substvars # Install command-line scripts in separate tools package. dh_install --sourcedir=debian/python3-biom-format \ --package=biom-format-tools usr/bin install -d debian/.debhelper/generated/python-biom-format install -d debian/.debhelper/generated/python3-biom-format install -d debian/.debhelper/generated/python-biom-format-doc install -d debian/biom-format-tools//usr cp --reflink=auto -a debian/python3-biom-format/usr/bin debian/biom-format-tools//usr/ install -d debian/.debhelper/generated/biom-format-tools rm -rf debian/python-biom-format/usr/bin rm -rf debian/python3-biom-format/usr/bin make[1]: Leaving directory '/build/python-biom-format-2.1.7+dfsg' rm -f debian/biom-format-tools.debhelper.log debian/python-biom-format-doc.debhelper.log debian/python-biom-format.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/python-biom-format-2.1.7+dfsg' dh_installdocs --indep install -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc install -d debian/python-biom-format-doc/usr/share/doc/python-biom-format cd './build/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format-doc/usr/share/doc/python-biom-format chown -R 0:0 debian/python-biom-format-doc/usr/share/doc chmod -R u\+rw,go=rX debian/python-biom-format-doc/usr/share/doc install -p -m0644 debian/copyright debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/copyright install -d debian/python-biom-format-doc/usr/share/doc-base/ install -p -m0644 debian/python-biom-format-doc.doc-base debian/python-biom-format-doc/usr/share/doc-base/python-biom-format dh_sphinxdoc --indep dh_sphinxdoc: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/copybutton.js ln -sf ../../../../javascript/sphinxdoc/1.0/underscore.js debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/underscore.js ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/searchtools.js ln -sf ../../../../javascript/sphinxdoc/1.0/jquery.js debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/jquery.js ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/doctools.js rm -rf debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/.doctrees rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/.buildinfo rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/websupport.js (grep -a -s -v sphinxdoc:Depends debian/python-biom-format-doc.substvars; echo "sphinxdoc:Depends=libjs-sphinxdoc (>= 1.0)") > debian/python-biom-format-doc.substvars.new mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars (grep -a -s -v sphinxdoc:Built-Using debian/python-biom-format-doc.substvars; echo "sphinxdoc:Built-Using=sphinx (= 1.8.4-1)") > debian/python-biom-format-doc.substvars.new mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars make[1]: Leaving directory '/build/python-biom-format-2.1.7+dfsg' dh_installdocs -O--buildsystem=pybuild -Npython-biom-format-doc install -d debian/python-biom-format/usr/share/doc/python-biom-format install -p -m0644 debian/copyright debian/python-biom-format/usr/share/doc/python-biom-format/copyright install -d debian/python3-biom-format/usr/share/doc/python3-biom-format install -p -m0644 debian/copyright debian/python3-biom-format/usr/share/doc/python3-biom-format/copyright install -d debian/biom-format-tools/usr/share/doc/biom-format-tools install -p -m0644 debian/copyright debian/biom-format-tools/usr/share/doc/biom-format-tools/copyright dh_sphinxdoc -O--buildsystem=pybuild dh_sphinxdoc: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/copybutton.js (grep -a -s -v sphinxdoc:Built-Using debian/python-biom-format-doc.substvars; echo "sphinxdoc:Built-Using=sphinx (= 1.8.4-1)") > debian/python-biom-format-doc.substvars.new mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars dh_installchangelogs -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog.Debian install -p -m0644 ./ChangeLog.md debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog install -p -m0644 debian/changelog debian/python-biom-format/usr/share/doc/python-biom-format/changelog.Debian install -p -m0644 ./ChangeLog.md debian/python-biom-format/usr/share/doc/python-biom-format/changelog install -p -m0644 debian/changelog debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog.Debian install -p -m0644 ./ChangeLog.md debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog install -p -m0644 debian/changelog debian/biom-format-tools/usr/share/doc/biom-format-tools/changelog.Debian install -p -m0644 ./ChangeLog.md debian/biom-format-tools/usr/share/doc/biom-format-tools/changelog rm -f debian/python-biom-format-doc.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/build/python-biom-format-2.1.7+dfsg' dh_installexamples find debian -name "*.c" -delete find debian -name "*.pyx" -delete # remove tests from Python2 package, move tests from Python3 package to examples package if [ ! -d biom/tests ] ; then \ mv `find debian/python*biom-format -name tests -type d` biom ; \ else \ find debian/python*biom-format -name tests -type d | xargs rm -rf ; \ fi make[1]: Leaving directory '/build/python-biom-format-2.1.7+dfsg' dh_python2 -O--buildsystem=pybuild D: dh_python2 dh_python2:393: version: 3.20190308 D: dh_python2 dh_python2:394: argv: ['/usr/share/dh-python/dh_python2', '-O--buildsystem=pybuild'] D: dh_python2 dh_python2:395: options: {'guess_versions': True, 'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'namespaces': None, 'clean_pycentral': False, 'shebang': None, 'ignore_shebangs': False, 'ignore_namespace': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python2 dh_python2:396: args: [] D: dh_python2 dh_python2:398: supported Python versions: 2.7 (default=2.7) D: dh_python2 debhelper:107: skipping package: python3-biom-format D: dh_python2 debhelper:100: skipping package biom-format-tools (missing ${python:Depends} in Depends) D: dh_python2 debhelper:153: source=python-biom-format, binary packages=['python-biom-format', 'python-biom-format-doc'] D: dh_python2 dh_python2:415: processing package python-biom-format... D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/__init__.pyc D: dh_python2 tools:232: invoking: /usr/bin/python2.7 -c 'import sysconfig as s;print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' I: dh_python2 fs:343: renaming _filter.so to _filter.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _subsample.so to _subsample.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _transform.so to _transform.x86_64-linux-gnu.so D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/err.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/exception.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/parse.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/table.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/util.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/installation_informer.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/metadata_adder.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_converter.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_head.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_ids.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_normalizer.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_subsetter.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_summarizer.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_validator.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/uc_processor.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/util.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/assets/exercise_api.pyc D: dh_python2 fs:260: package python-biom-format details = {'requires.txt': {'debian/python-biom-format/usr/lib/python2.7/dist-packages/biom_format-2.1.7.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('2.7')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('2.7')}, 'ext_no_version': set()} D: dh_python2 depends:114: generating dependencies for package python-biom-format D: dh_python2 pydist:138: trying to find dependency for click (python=2.7) D: dh_python2 pydist:138: trying to find dependency for future>=0.16.0 (python=2.7) D: dh_python2 pydist:138: trying to find dependency for numpy>=1.9.2 (python=2.7) D: dh_python2 pydist:138: trying to find dependency for pandas>=0.20.0 (python=2.7) D: dh_python2 pydist:138: trying to find dependency for pyqi (python=2.7) D: dh_python2 pydist:138: trying to find dependency for scipy>=0.13.0 (python=2.7) D: dh_python2 pydist:138: trying to find dependency for six>=1.10.0 (python=2.7) D: dh_python2 depends:272: D={'python-future', 'python-scipy', 'python-numpy', 'python:any (<< 2.8)', 'python:any (>= 2.7~)', 'python-pandas', 'python:any', 'python (>= 2.7~)', 'python-six (>= 1.10.0)', 'pyqi', 'python-click', 'python (<< 2.8)'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python2 dh_python2:415: processing package python-biom-format-doc... D: dh_python2 fs:260: package python-biom-format-doc details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python2 depends:114: generating dependencies for package python-biom-format-doc D: dh_python2 depends:272: D=set(); R=[]; S=[]; E=[], B=[]; RT=[] dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 3.20190308 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:166: supported Python versions: 3.7 (default=3.7) D: dh_python3 debhelper:107: skipping package: python-biom-format D: dh_python3 debhelper:107: skipping package: python-biom-format-doc D: dh_python3 debhelper:153: source=python-biom-format, binary packages=['python3-biom-format', 'biom-format-tools'] D: dh_python3 dh_python3:183: processing package python3-biom-format... D: dh_python3 fs:49: moving files from debian/python3-biom-format/usr/lib/python3.7/dist-packages to debian/python3-biom-format/usr/lib/python3/dist-packages/ D: dh_python3 tools:232: invoking: /usr/bin/python3.7 -c 'import sysconfig as s;print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' D: dh_python3 fs:260: package python3-biom-format details = {'requires.txt': {'debian/python3-biom-format/usr/lib/python3/dist-packages/biom_format-2.1.7.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.7')}, 'ext_no_version': set()} D: dh_python3 depends:114: generating dependencies for package python3-biom-format D: dh_python3 pydist:138: trying to find dependency for click (python=None) D: dh_python3 pydist:138: trying to find dependency for future>=0.16.0 (python=None) D: dh_python3 pydist:138: trying to find dependency for numpy>=1.9.2 (python=None) D: dh_python3 pydist:138: trying to find dependency for pandas>=0.20.0 (python=None) D: dh_python3 pydist:138: trying to find dependency for scipy>=0.13.0 (python=None) D: dh_python3 pydist:138: trying to find dependency for six>=1.10.0 (python=None) D: dh_python3 depends:272: D={'python3-numpy', 'python3-scipy', 'python3-six (>= 1.10.0)', 'python3:any', 'python3 (<< 3.8)', 'python3-future', 'python3-pandas', 'python3-click', 'python3 (>= 3.7~)'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python3 dh_python3:183: processing package biom-format-tools... D: dh_python3 fs:260: package biom-format-tools details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:114: generating dependencies for package biom-format-tools D: dh_python3 depends:272: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/underscore.js ln -s ../../../../javascript/sphinxdoc/1.0/underscore.js debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/underscore.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/searchtools.js ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/searchtools.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/jquery.js ln -s ../../../../javascript/sphinxdoc/1.0/jquery.js debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/jquery.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/doctools.js ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/doctools.js dh_strip_nondeterminism -O--buildsystem=pybuild Using 1550092427 as canonical time Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/file.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/down.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/down-pressed.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/comment.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/bullet_orange.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/biom-format.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/bg-page.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/alert_warning_32.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/up.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/up-pressed.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/comment-close.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/comment-bright.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/alert_info_32.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_images/biom-format.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/minus.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/python-biom-format cd debian/python3-biom-format cd debian/python-biom-format-doc cd debian/biom-format-tools chmod a-x usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian chmod a-x usr/share/doc/python-biom-format/changelog usr/share/doc/python-biom-format/changelog.Debian chmod a-x usr/share/doc/biom-format-tools/changelog usr/share/doc/biom-format-tools/changelog.Debian chmod a-x usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian gzip -9nf usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian gzip -9nf usr/share/doc/python-biom-format/changelog usr/share/doc/python-biom-format/changelog.Debian gzip -9nf usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian gzip -9nf usr/share/doc/biom-format-tools/changelog usr/share/doc/biom-format-tools/changelog.Debian cd '/build/python-biom-format-2.1.7+dfsg' cd '/build/python-biom-format-2.1.7+dfsg' cd '/build/python-biom-format-2.1.7+dfsg' cd '/build/python-biom-format-2.1.7+dfsg' rm -f debian/biom-format-tools.debhelper.log debian/python-biom-format-doc.debhelper.log debian/python-biom-format.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/build/python-biom-format-2.1.7+dfsg' dh_fixperms find debian/python-biom-format -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python3-biom-format -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python-biom-format-doc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/biom-format-tools -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/biom-format-tools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biom-format-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biom-format ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/biom-format-tools/usr/share/doc -type f -a -true -a ! -regex 'debian/biom-format-tools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biom-format-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biom-format-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biom-format-tools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-biom-format/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biom-format/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biom-format-tools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biom-format-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-biom-format/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biom-format/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biom-format/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biom-format-tools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python-biom-format -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-biom-format-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biom-format/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python3-biom-format/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name exercise_cli.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/build/python-biom-format-2.1.7+dfsg' dh_missing -O--buildsystem=pybuild dh_dwz -O--buildsystem=pybuild install -d debian/python-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -q -mdebian/python-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu/python-biom-format.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/python-biom-format.debug -- debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_filter.x86_64-linux-gnu.so debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_subsample.x86_64-linux-gnu.so debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_transform.x86_64-linux-gnu.so objcopy --compress-debug-sections debian/python-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu/python-biom-format.debug install -d debian/python3-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -q -mdebian/python3-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biom-format.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biom-format.debug -- debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-37m-x86_64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-37m-x86_64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-37m-x86_64-linux-gnu.so objcopy --compress-debug-sections debian/python3-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biom-format.debug dh_strip -O--buildsystem=pybuild install -d debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/2e objcopy --only-keep-debug --compress-debug-sections debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_transform.x86_64-linux-gnu.so debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/2e/53c7363c9257ba3be28dcb09d60b68120f92bc.debug install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/67 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-37m-x86_64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/67/d7943eb29d459ea9c78c22cd83c0f4b9a017af.debug chmod 0644 -- debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/2e/53c7363c9257ba3be28dcb09d60b68120f92bc.debug chown 0:0 -- debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/2e/53c7363c9257ba3be28dcb09d60b68120f92bc.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_transform.x86_64-linux-gnu.so chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/67/d7943eb29d459ea9c78c22cd83c0f4b9a017af.debug chown 0:0 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/67/d7943eb29d459ea9c78c22cd83c0f4b9a017af.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-37m-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/67/d7943eb29d459ea9c78c22cd83c0f4b9a017af.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-37m-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/2e/53c7363c9257ba3be28dcb09d60b68120f92bc.debug debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_transform.x86_64-linux-gnu.so install -d debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/81 objcopy --only-keep-debug --compress-debug-sections debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_subsample.x86_64-linux-gnu.so debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/81/cf617f6356983ee09466beb94be615f52033af.debug install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/18 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-37m-x86_64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/18/86bcfceb0116ca183c4ca8cdc335782fad1872.debug chmod 0644 -- debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/81/cf617f6356983ee09466beb94be615f52033af.debug chown 0:0 -- debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/81/cf617f6356983ee09466beb94be615f52033af.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_subsample.x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/81/cf617f6356983ee09466beb94be615f52033af.debug debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_subsample.x86_64-linux-gnu.so chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/18/86bcfceb0116ca183c4ca8cdc335782fad1872.debug chown 0:0 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/18/86bcfceb0116ca183c4ca8cdc335782fad1872.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-37m-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/18/86bcfceb0116ca183c4ca8cdc335782fad1872.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-37m-x86_64-linux-gnu.so install -d debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/56 objcopy --only-keep-debug --compress-debug-sections debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_filter.x86_64-linux-gnu.so debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/56/ac10f8721a69f3f96aa8a6c10b9a2991b59c18.debug install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/e9 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-37m-x86_64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/e9/ab23d0bc9f38bcde98e69762cf3f00c15580d2.debug chmod 0644 -- debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/56/ac10f8721a69f3f96aa8a6c10b9a2991b59c18.debug chown 0:0 -- debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/56/ac10f8721a69f3f96aa8a6c10b9a2991b59c18.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_filter.x86_64-linux-gnu.so chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/e9/ab23d0bc9f38bcde98e69762cf3f00c15580d2.debug chown 0:0 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/e9/ab23d0bc9f38bcde98e69762cf3f00c15580d2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-37m-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/56/ac10f8721a69f3f96aa8a6c10b9a2991b59c18.debug debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_filter.x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/e9/ab23d0bc9f38bcde98e69762cf3f00c15580d2.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-37m-x86_64-linux-gnu.so install -d debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.dwz install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python-biom-format/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python-biom-format/usr/lib/debug rm -fr debian/python3-biom-format/usr/lib/debug/.dwz install -d debian/.debhelper/python-biom-format/dbgsym-root/usr/share/doc ln -s python-biom-format debian/.debhelper/python-biom-format/dbgsym-root/usr/share/doc/python-biom-format-dbgsym rmdir -p --ignore-fail-on-non-empty debian/python3-biom-format/usr/lib/debug install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc ln -s python3-biom-format debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc/python3-biom-format-dbgsym dh_makeshlibs -O--buildsystem=pybuild rm -f debian/python-biom-format/DEBIAN/shlibs rm -f debian/python3-biom-format/DEBIAN/shlibs rm -f debian/python-biom-format-doc/DEBIAN/shlibs rm -f debian/biom-format-tools/DEBIAN/shlibs dh_shlibdeps -O--buildsystem=pybuild install -d debian/python-biom-format/DEBIAN dpkg-shlibdeps -Tdebian/python-biom-format.substvars debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_filter.x86_64-linux-gnu.so debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_subsample.x86_64-linux-gnu.so debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_transform.x86_64-linux-gnu.so install -d debian/python3-biom-format/DEBIAN dpkg-shlibdeps -Tdebian/python3-biom-format.substvars debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-37m-x86_64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-37m-x86_64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-37m-x86_64-linux-gnu.so dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_subsample.x86_64-linux-gnu.so debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_filter.x86_64-linux-gnu.so debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_transform.x86_64-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-37m-x86_64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-37m-x86_64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-37m-x86_64-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols) dh_installdeb -O--buildsystem=pybuild printf '#!/bin/sh\nset -e\n' > debian/python-biom-format/DEBIAN/postinst cat debian/python-biom-format.postinst.debhelper >> debian/python-biom-format/DEBIAN/postinst chmod 0755 -- debian/python-biom-format/DEBIAN/postinst chown 0:0 -- debian/python-biom-format/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python-biom-format/DEBIAN/prerm cat debian/python-biom-format.prerm.debhelper >> debian/python-biom-format/DEBIAN/prerm chmod 0755 -- debian/python-biom-format/DEBIAN/prerm chown 0:0 -- debian/python-biom-format/DEBIAN/prerm printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/postinst cat debian/python3-biom-format.postinst.debhelper >> debian/python3-biom-format/DEBIAN/postinst chmod 0755 -- debian/python3-biom-format/DEBIAN/postinst chown 0:0 -- debian/python3-biom-format/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/prerm cat debian/python3-biom-format.prerm.debhelper >> debian/python3-biom-format/DEBIAN/prerm chmod 0755 -- debian/python3-biom-format/DEBIAN/prerm chown 0:0 -- debian/python3-biom-format/DEBIAN/prerm install -d debian/python-biom-format-doc/DEBIAN install -d debian/biom-format-tools/DEBIAN dh_gencontrol -O--buildsystem=pybuild echo misc:Depends= >> debian/python-biom-format-doc.substvars echo misc:Pre-Depends= >> debian/python-biom-format-doc.substvars dpkg-gencontrol -ppython-biom-format-doc -ldebian/changelog -Tdebian/python-biom-format-doc.substvars -Pdebian/python-biom-format-doc -UMulti-Arch echo misc:Depends= >> debian/biom-format-tools.substvars echo misc:Pre-Depends= >> debian/biom-format-tools.substvars dpkg-gencontrol -pbiom-format-tools -ldebian/changelog -Tdebian/biom-format-tools.substvars -Pdebian/biom-format-tools -UMulti-Arch echo misc:Depends= >> debian/python3-biom-format.substvars echo misc:Pre-Depends= >> debian/python3-biom-format.substvars install -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -Pdebian/.debhelper/python3-biom-format/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=python3-biom-format-dbgsym "-DDepends=python3-biom-format (= \${binary:Version})" "-DDescription=debug symbols for python3-biom-format" "-DBuild-Ids=1886bcfceb0116ca183c4ca8cdc335782fad1872 67d7943eb29d459ea9c78c22cd83c0f4b9a017af e9ab23d0bc9f38bcde98e69762cf3f00c15580d2" -DSection=debug -UMulti-Arch -UReplaces -UBreaks echo misc:Depends= >> debian/python-biom-format.substvars echo misc:Pre-Depends= >> debian/python-biom-format.substvars install -d debian/.debhelper/python-biom-format/dbgsym-root/DEBIAN dpkg-gencontrol -ppython-biom-format -ldebian/changelog -Tdebian/python-biom-format.substvars -Pdebian/.debhelper/python-biom-format/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=python-biom-format-dbgsym "-DDepends=python-biom-format (= \${binary:Version})" "-DDescription=debug symbols for python-biom-format" "-DBuild-Ids=2e53c7363c9257ba3be28dcb09d60b68120f92bc 56ac10f8721a69f3f96aa8a6c10b9a2991b59c18 81cf617f6356983ee09466beb94be615f52033af" -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package biom-format-tools: substitution variable ${python:Depends} unused, but is defined chmod 0644 -- debian/biom-format-tools/DEBIAN/control chown 0:0 -- debian/biom-format-tools/DEBIAN/control dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined chmod 0644 -- debian/python-biom-format-doc/DEBIAN/control chown 0:0 -- debian/python-biom-format-doc/DEBIAN/control dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package python-biom-format: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-biom-format: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-biom-format: substitution variable ${python:Versions} unused, but is defined chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -Pdebian/python3-biom-format -UMulti-Arch chmod 0644 -- debian/.debhelper/python-biom-format/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/python-biom-format/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython-biom-format -ldebian/changelog -Tdebian/python-biom-format.substvars -Pdebian/python-biom-format -UMulti-Arch dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python:Depends} unused, but is defined chmod 0644 -- debian/python3-biom-format/DEBIAN/control chown 0:0 -- debian/python3-biom-format/DEBIAN/control dpkg-gencontrol: warning: package python-biom-format: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-biom-format: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-biom-format: substitution variable ${python:Versions} unused, but is defined chmod 0644 -- debian/python-biom-format/DEBIAN/control chown 0:0 -- debian/python-biom-format/DEBIAN/control dh_md5sums -O--buildsystem=pybuild cd debian/biom-format-tools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python-biom-format >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-biom-format >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python-biom-format-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python-biom-format-doc/DEBIAN/md5sums chown 0:0 -- debian/python-biom-format-doc/DEBIAN/md5sums chmod 0644 -- debian/biom-format-tools/DEBIAN/md5sums chown 0:0 -- debian/biom-format-tools/DEBIAN/md5sums chmod 0644 -- debian/python3-biom-format/DEBIAN/md5sums chown 0:0 -- debian/python3-biom-format/DEBIAN/md5sums chmod 0644 -- debian/python-biom-format/DEBIAN/md5sums chown 0:0 -- debian/python-biom-format/DEBIAN/md5sums cd debian/.debhelper/python3-biom-format/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/python-biom-format/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python-biom-format/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/python-biom-format/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --build debian/python-biom-format .. dpkg-deb --build debian/.debhelper/python-biom-format/dbgsym-root .. dpkg-deb --build debian/python3-biom-format .. dpkg-deb --build debian/.debhelper/python3-biom-format/dbgsym-root .. dpkg-deb --build debian/python-biom-format-doc .. dpkg-deb --build debian/biom-format-tools .. dpkg-deb: building package 'biom-format-tools' in '../biom-format-tools_2.1.7+dfsg-2_amd64.deb'. dpkg-deb: building package 'python-biom-format-dbgsym' in '../python-biom-format-dbgsym_2.1.7+dfsg-2_amd64.deb'. dpkg-deb: building package 'python-biom-format-doc' in '../python-biom-format-doc_2.1.7+dfsg-2_all.deb'. dpkg-deb: building package 'python3-biom-format-dbgsym' in '../python3-biom-format-dbgsym_2.1.7+dfsg-2_amd64.deb'. dpkg-deb: building package 'python-biom-format' in '../python-biom-format_2.1.7+dfsg-2_amd64.deb'. dpkg-deb: building package 'python3-biom-format' in '../python3-biom-format_2.1.7+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-biom-format_2.1.7+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/504312/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/504312/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/504312 and its subdirectories I: Current time: Fri Dec 10 12:18:12 +14 2021 I: pbuilder-time-stamp: 1639088292