I: pbuilder: network access will be disabled during build I: Current time: Fri Jan 14 23:11:00 +14 2022 I: pbuilder-time-stamp: 1642151460 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [obitools_1.2.12+dfsg-2.dsc] I: copying [./obitools_1.2.12+dfsg.orig.tar.xz] I: copying [./obitools_1.2.12+dfsg-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Jan 29 05:30:48 2019 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./obitools_1.2.12+dfsg-2.dsc dpkg-source: info: extracting obitools in obitools-1.2.12+dfsg dpkg-source: info: unpacking obitools_1.2.12+dfsg.orig.tar.xz dpkg-source: info: unpacking obitools_1.2.12+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_libs dpkg-source: info: applying fix_path_interpreter I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/62467/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/62467/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/62467/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=9e33e7fffd7e49a7b36a7f3c14a75f1b LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=62467 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.dt0hO4qnTy/pbuilderrc_JFyV --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.dt0hO4qnTy/b2 --logfile b2/build.log obitools_1.2.12+dfsg-2.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 5.9.0-0.bpo.2-amd64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash -rwxr-xr-x 1 root root 109408 Mar 1 2019 date -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd -rwxr-xr-x 1 root root 93744 Mar 1 2019 df -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 35424 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln -rwxr-xr-x 1 root root 56760 Jul 27 2018 login -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 10 2019 more -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Jan 14 23:11 sh -> bash lrwxrwxrwx 1 root root 4 Jan 10 04:47 sh.distrib -> dash -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty -rwsr-xr-x 1 root root 63568 Jan 10 2019 su -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch -rwxr-xr-x 1 root root 35424 Mar 1 2019 true -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/62467/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), dh-python, python-dev, python-sphinx, cython, ipython, python-wheel, python-virtualenv dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python-dev; however: Package python-dev is not installed. pbuilder-satisfydepends-dummy depends on python-sphinx; however: Package python-sphinx is not installed. pbuilder-satisfydepends-dummy depends on cython; however: Package cython is not installed. pbuilder-satisfydepends-dummy depends on ipython; however: Package ipython is not installed. pbuilder-satisfydepends-dummy depends on python-wheel; however: Package python-wheel is not installed. pbuilder-satisfydepends-dummy depends on python-virtualenv; however: Package python-virtualenv is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} cython{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} ipython{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libpipeline1{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} openssl{a} po-debconf{a} python{a} python-alabaster{a} python-babel{a} python-babel-localedata{a} python-backports-shutil-get-terminal-size{a} python-certifi{a} python-chardet{a} python-decorator{a} python-dev{a} python-docutils{a} python-enum34{a} python-idna{a} python-imagesize{a} python-ipython{a} python-ipython-genutils{a} python-jinja2{a} python-markupsafe{a} python-minimal{a} python-packaging{a} python-pathlib2{a} python-pexpect{a} python-pickleshare{a} python-pip-whl{a} python-pkg-resources{a} python-prompt-toolkit{a} python-ptyprocess{a} python-pygments{a} python-pyparsing{a} python-requests{a} python-roman{a} python-scandir{a} python-simplegeneric{a} python-six{a} python-sphinx{a} python-traitlets{a} python-typing{a} python-tz{a} python-urllib3{a} python-virtualenv{a} python-wcwidth{a} python-wheel{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl docutils-doc javascript-common libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libpaper-utils lynx python-cryptography python-ipaddress python-keyring python-keyrings.alt python-openssl python-pil python-xdg shared-mime-info virtualenv wget xdg-user-dirs 0 packages upgraded, 116 newly installed, 0 to remove and 0 not upgraded. Need to get 75.8 MB of archives. After unpacking 233 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u3 [1538 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u2 [589 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u2 [1731 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u2 [1732 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u2 [330 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 sgml-base all 1.29 [14.8 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u1 [242 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u1 [117 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u1 [66.4 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1d-0+deb10u3 [844 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20190110 [157 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 cython amd64 0.29.2-2 [1365 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u2 [1258 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u1 [689 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 dh-python all 3.20190308 [99.3 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 docutils-common all 0.14+dfsg-4 [167 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 python-decorator all 4.3.0-1.1 [14.4 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 python-ptyprocess all 0.6.0-1 [13.1 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 python-pexpect all 4.6.0-1 [51.6 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 python-six all 1.12.0-1 [15.7 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 python-scandir amd64 1.9.0-2 [18.3 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 python-pathlib2 all 2.3.3-1 [18.3 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 python-pickleshare all 0.7.5-1 [7276 B] Get: 73 http://deb.debian.org/debian buster/main amd64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 python-wcwidth all 0.1.7+dfsg1-3 [15.0 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 python-prompt-toolkit all 1.0.15-1 [179 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 python-pygments all 2.3.1+dfsg-1 [596 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 python-simplegeneric all 0.8.1-2 [11.0 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 python-ipython-genutils all 0.2.0-1 [20.8 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 python-enum34 all 1.1.6-2 [35.3 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 python-traitlets all 4.3.2-1 [60.7 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 python-backports-shutil-get-terminal-size all 1.0.0-5 [5088 B] Get: 82 http://deb.debian.org/debian buster/main amd64 python-ipython all 5.8.0-1 [390 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 ipython all 5.8.0-1 [14.1 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 libexpat1-dev amd64 2.2.6-2+deb10u1 [153 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3 [332 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 libjs-underscore all 1.9.1~dfsg-1 [99.4 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 libjs-sphinxdoc all 1.8.4-1 [95.9 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 libpython2.7 amd64 2.7.16-2+deb10u1 [1036 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 libpython2.7-dev amd64 2.7.16-2+deb10u1 [31.6 MB] Get: 90 http://deb.debian.org/debian buster/main amd64 libpython2-dev amd64 2.7.16-1 [20.9 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 libpython-dev amd64 2.7.16-1 [20.9 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 python-alabaster all 0.7.8-1 [18.4 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 python-babel-localedata all 2.6.0+dfsg.1-1 [4083 kB] Get: 94 http://deb.debian.org/debian buster/main amd64 python-tz all 2019.1-1 [33.6 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 python-babel all 2.6.0+dfsg.1-1 [97.3 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 python-certifi all 2018.8.24-1 [140 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 python-chardet all 3.0.4-3 [80.6 kB] Get: 98 http://deb.debian.org/debian buster/main amd64 python2.7-dev amd64 2.7.16-2+deb10u1 [294 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 python2-dev amd64 2.7.16-1 [1212 B] Get: 100 http://deb.debian.org/debian buster/main amd64 python-dev amd64 2.7.16-1 [1192 B] Get: 101 http://deb.debian.org/debian buster/main amd64 python-roman all 2.0.0-3 [8688 B] Get: 102 http://deb.debian.org/debian buster/main amd64 python-docutils all 0.14+dfsg-4 [379 kB] Get: 103 http://deb.debian.org/debian buster/main amd64 python-idna all 2.6-1 [34.1 kB] Get: 104 http://deb.debian.org/debian buster/main amd64 python-imagesize all 1.0.0-1 [4888 B] Get: 105 http://deb.debian.org/debian buster/main amd64 python-markupsafe amd64 1.1.0-1 [14.0 kB] Get: 106 http://deb.debian.org/debian buster/main amd64 python-jinja2 all 2.10-2 [106 kB] Get: 107 http://deb.debian.org/debian buster/main amd64 python-pyparsing all 2.2.0+dfsg1-2 [89.5 kB] Get: 108 http://deb.debian.org/debian buster/main amd64 python-packaging all 19.0-1 [20.4 kB] Get: 109 http://deb.debian.org/debian buster/main amd64 python-pip-whl all 18.1-5 [1591 kB] Get: 110 http://deb.debian.org/debian buster/main amd64 python-urllib3 all 1.24.1-1 [97.0 kB] Get: 111 http://deb.debian.org/debian buster/main amd64 python-requests all 2.21.0-1 [67.1 kB] Get: 112 http://deb.debian.org/debian buster/main amd64 python-typing all 3.6.6-1 [22.7 kB] Get: 113 http://deb.debian.org/debian buster/main amd64 sphinx-common all 1.8.4-1 [500 kB] Get: 114 http://deb.debian.org/debian buster/main amd64 python-sphinx all 1.8.4-1 [482 kB] Get: 115 http://deb.debian.org/debian buster/main amd64 python-virtualenv all 15.1.0+ds-2 [61.5 kB] Get: 116 http://deb.debian.org/debian buster/main amd64 python-wheel all 0.32.3-2 [19.3 kB] Fetched 75.8 MB in 1s (63.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... 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Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20658 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_amd64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... 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Preparing to unpack .../python3.7-minimal_3.7.3-2+deb10u2_amd64.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u2) ... Setting up libssl1.1:amd64 (1.1.1d-0+deb10u3) ... Setting up libpython3.7-minimal:amd64 (3.7.3-2+deb10u2) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u2) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Unpacking libpython3.7-stdlib:amd64 (3.7.3-2+deb10u2) ... Selecting previously unselected package python3.7. Preparing to unpack .../python3.7_3.7.3-2+deb10u2_amd64.deb ... Unpacking python3.7 (3.7.3-2+deb10u2) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../libpython3-stdlib_3.7.3-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... 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Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../23-libglib2.0-0_2.58.3-2+deb10u2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../24-libicu63_63.1-6+deb10u1_amd64.deb ... Unpacking libicu63:amd64 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../25-libxml2_2.9.4+dfsg1-7+deb10u1_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+deb10u1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../26-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../27-libncurses6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../32-python3-lib2to3_3.7.3-1_all.deb ... Unpacking python3-lib2to3 (3.7.3-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../33-python3-distutils_3.7.3-1_all.deb ... Unpacking python3-distutils (3.7.3-1) ... 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Preparing to unpack .../87-python-wheel_0.32.3-2_all.deb ... Unpacking python-wheel (0.32.3-2) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up mime-support (3.62) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:amd64 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up python-babel-localedata (2.6.0+dfsg.1-1) ... Setting up autotools-dev (20180224.1) ... Setting up libexpat1-dev:amd64 (2.2.6-2+deb10u1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up sgml-base (1.29) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up openssl (1.1.1d-0+deb10u3) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u1) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libjs-underscore (1.9.1~dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u2) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libjs-sphinxdoc (1.8.4-1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up xml-core (0.18+nmu1) ... Setting up python-pip-whl (18.1-5) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u2) ... Setting up libpython2.7:amd64 (2.7.16-2+deb10u1) ... Setting up libpython2.7-dev:amd64 (2.7.16-2+deb10u1) ... Setting up gettext (0.19.8.1-9) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up sphinx-common (1.8.4-1) ... Setting up libpython2-dev:amd64 (2.7.16-1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python2.7-dev (2.7.16-2+deb10u1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up python-enum34 (1.1.6-2) ... Setting up cython (0.29.2-2) ... Setting up python2-dev (2.7.16-1) ... Setting up python-typing (3.6.6-1) ... Setting up python-wheel (0.32.3-2) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up python-certifi (2018.8.24-1) ... Setting up python-pygments (2.3.1+dfsg-1) ... Setting up python-decorator (4.3.0-1.1) ... Setting up libpython-dev:amd64 (2.7.16-1) ... Setting up python-ipython-genutils (0.2.0-1) ... Setting up python-six (1.12.0-1) ... Setting up python-pyparsing (2.2.0+dfsg1-2) ... Setting up python-traitlets (4.3.2-1) ... Setting up python-imagesize (1.0.0-1) ... Setting up python-idna (2.6-1) ... Setting up python-markupsafe (1.1.0-1) ... Setting up python-roman (2.0.0-3) ... Setting up python-tz (2019.1-1) ... Setting up python-simplegeneric (0.8.1-2) ... Setting up python-backports-shutil-get-terminal-size (1.0.0-5) ... Setting up python-scandir (1.9.0-2) ... Setting up python-wcwidth (0.1.7+dfsg1-3) ... Setting up python-ptyprocess (0.6.0-1) ... Setting up python-alabaster (0.7.8-1) ... Setting up python-chardet (3.0.4-3) ... Setting up python-babel (2.6.0+dfsg.1-1) ... update-alternatives: using /usr/bin/pybabel-python2 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python-virtualenv (15.1.0+ds-2) ... Setting up python-dev (2.7.16-1) ... Setting up python-packaging (19.0-1) ... Setting up python-pexpect (4.6.0-1) ... Setting up python-urllib3 (1.24.1-1) ... Setting up python-pathlib2 (2.3.3-1) ... Setting up python-jinja2 (2.10-2) ... Setting up python-prompt-toolkit (1.0.15-1) ... Setting up python-requests (2.21.0-1) ... Setting up python-pickleshare (0.7.5-1) ... Setting up python-ipython (5.8.0-1) ... Setting up ipython (5.8.0-1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up debhelper (12.1.1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.14+dfsg-4) ... Processing triggers for sgml-base (1.29) ... Setting up python-docutils (0.14+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python-sphinx (1.8.4-1) ... update-alternatives: using /usr/share/sphinx/scripts/python2/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python2/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python2/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python2/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/obitools-1.2.12+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package obitools dpkg-buildpackage: info: source version 1.2.12+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python2,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py clean ['src/obitools/_obitools.pyx'] ['src/obitools/fastq/_fastq.pyx'] ['src/obitools/format/_format.pyx'] ['src/obitools/format/genericparser/_genericparser.pyx'] ['src/obitools/word/_binary.pyx'] @@@@> ['src/obitools/word/_readindex.h'] ['src/obitools/word/_readindex.pyx'] ['src/obitools/profile/_profile.pyx'] ['src/obitools/align/_qsrassemble.pyx'] ['src/obitools/align/_codonnws.pyx'] ['src/obitools/align/_freeendgap.pyx'] ['src/obitools/align/_dynamic.pyx'] ['src/obitools/align/_qsassemble.pyx'] @@@@> ['src/obitools/align/_sse.h'] ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] ['src/obitools/align/_assemble.pyx'] ['src/obitools/align/_gprofilenws.pyx'] ['src/obitools/align/_freeendgapfm.pyx'] ['src/obitools/align/_nwsdnabyprot.pyx'] ['src/obitools/align/_profilenws.pyx'] ['src/obitools/align/_nws.pyx'] ['src/obitools/align/_rassemble.pyx'] @@@@> ['src/obitools/align/_lcs.h'] ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c'] ['src/obitools/fasta/_fasta.pyx'] ['src/obitools/utils/_utils.pyx'] ['src/obitools/tools/_solexapairend.pyx'] ['src/obitools/options/_bioseqfilter.pyx'] ['src/obitools/options/_options.pyx'] running clean removing '/build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/obitools-1.2.12+dfsg' dh_clean rm -rf build rm -f doc/sphinx/build_dir.txt make[1]: Leaving directory '/build/obitools-1.2.12+dfsg' debian/rules build dh build --with python2,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py config ['src/obitools/_obitools.pyx'] ['src/obitools/fastq/_fastq.pyx'] ['src/obitools/format/_format.pyx'] ['src/obitools/format/genericparser/_genericparser.pyx'] ['src/obitools/word/_binary.pyx'] @@@@> ['src/obitools/word/_readindex.h'] ['src/obitools/word/_readindex.pyx'] ['src/obitools/profile/_profile.pyx'] ['src/obitools/align/_qsrassemble.pyx'] ['src/obitools/align/_codonnws.pyx'] ['src/obitools/align/_freeendgap.pyx'] ['src/obitools/align/_dynamic.pyx'] ['src/obitools/align/_qsassemble.pyx'] @@@@> ['src/obitools/align/_sse.h'] ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] ['src/obitools/align/_assemble.pyx'] ['src/obitools/align/_gprofilenws.pyx'] ['src/obitools/align/_freeendgapfm.pyx'] ['src/obitools/align/_nwsdnabyprot.pyx'] ['src/obitools/align/_profilenws.pyx'] ['src/obitools/align/_nws.pyx'] ['src/obitools/align/_rassemble.pyx'] @@@@> ['src/obitools/align/_lcs.h'] ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c'] ['src/obitools/fasta/_fasta.pyx'] ['src/obitools/utils/_utils.pyx'] ['src/obitools/tools/_solexapairend.pyx'] ['src/obitools/options/_bioseqfilter.pyx'] ['src/obitools/options/_options.pyx'] running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py build ['src/obitools/_obitools.pyx'] ['src/obitools/fastq/_fastq.pyx'] ['src/obitools/format/_format.pyx'] ['src/obitools/format/genericparser/_genericparser.pyx'] ['src/obitools/word/_binary.pyx'] @@@@> ['src/obitools/word/_readindex.h'] ['src/obitools/word/_readindex.pyx'] ['src/obitools/profile/_profile.pyx'] ['src/obitools/align/_qsrassemble.pyx'] ['src/obitools/align/_codonnws.pyx'] ['src/obitools/align/_freeendgap.pyx'] ['src/obitools/align/_dynamic.pyx'] ['src/obitools/align/_qsassemble.pyx'] @@@@> ['src/obitools/align/_sse.h'] ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] ['src/obitools/align/_assemble.pyx'] ['src/obitools/align/_gprofilenws.pyx'] ['src/obitools/align/_freeendgapfm.pyx'] ['src/obitools/align/_nwsdnabyprot.pyx'] ['src/obitools/align/_profilenws.pyx'] ['src/obitools/align/_nws.pyx'] ['src/obitools/align/_rassemble.pyx'] @@@@> ['src/obitools/align/_lcs.h'] ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c'] ['src/obitools/fasta/_fasta.pyx'] ['src/obitools/utils/_utils.pyx'] ['src/obitools/tools/_solexapairend.pyx'] ['src/obitools/options/_bioseqfilter.pyx'] ['src/obitools/options/_options.pyx'] running build Running obidistutils build process running littlebigman creating build creating build/temp.linux-amd64-2.7 building 'littlebigman' program creating build/temp.linux-amd64-2.7/distutils.ext creating build/temp.linux-amd64-2.7/distutils.ext/src x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c distutils.ext/src/littlebigman.c -o build/temp.linux-amd64-2.7/distutils.ext/src/littlebigman.o -msse2 distutils.ext/src/littlebigman.c: In function 'main': distutils.ext/src/littlebigman.c:20:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ distutils.ext/src/littlebigman.c:23:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' return 0; ^~~~~~ x86_64-linux-gnu-gcc -pthread build/temp.linux-amd64-2.7/distutils.ext/src/littlebigman.o -o build/temp.linux-amd64-2.7/littlebigman Your CPU is in mode : -DLITTLE_END running build_py creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools copying src/obitools/solexaPairEnd.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools copying src/obitools/sample.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools copying src/obitools/svg.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools copying src/obitools/collections.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools copying src/obitools/fast.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools copying src/obitools/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools copying src/obitools/decorator.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools copying src/obitools/SVGdraw.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools copying src/obitools/version.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools copying src/obitools/gzip.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools copying src/obitools/zipfile.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/taxonomy.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/ecotag.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/rawdata.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/databases.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/options.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecobarcode creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fastq copying src/obitools/fastq/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fastq creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/distances copying src/obitools/distances/phylip.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/distances copying src/obitools/distances/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/distances copying src/obitools/distances/observed.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/distances copying src/obitools/distances/r.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/distances creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/blast copying src/obitools/blast/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/blast creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format copying src/obitools/format/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format copying src/obitools/format/options.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/genericparser copying src/obitools/format/genericparser/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/genericparser creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/fnaqual.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/fasta.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/genbank.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/tagmatcher.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/fastq.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/embl.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/ontology copying src/obitools/format/ontology/go_obo.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/ontology copying src/obitools/format/ontology/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/ontology creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/word copying src/obitools/word/predicate.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/word copying src/obitools/word/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/word copying src/obitools/word/options.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/word creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/alignment copying src/obitools/alignment/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/alignment copying src/obitools/alignment/ace.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/alignment creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/interactive copying src/obitools/interactive/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/interactive creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tagmatcher copying src/obitools/tagmatcher/parser.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tagmatcher copying src/obitools/tagmatcher/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tagmatcher copying src/obitools/tagmatcher/options.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tagmatcher creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb copying src/obitools/seqdb/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb copying src/obitools/seqdb/dnaparser.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/genbank copying src/obitools/seqdb/genbank/parser.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/genbank copying src/obitools/seqdb/genbank/ncbi.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/genbank copying src/obitools/seqdb/genbank/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/genbank creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/embl copying src/obitools/seqdb/embl/parser.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/embl copying src/obitools/seqdb/embl/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/embl creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/blastdb copying src/obitools/seqdb/blastdb/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/blastdb creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/table copying src/obitools/table/csv.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/table copying src/obitools/table/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/table creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/profile copying src/obitools/profile/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/profile creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecopcr copying src/obitools/ecopcr/taxonomy.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecopcr copying src/obitools/ecopcr/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecopcr copying src/obitools/ecopcr/sequence.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecopcr copying src/obitools/ecopcr/annotation.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecopcr copying src/obitools/ecopcr/options.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecopcr creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align copying src/obitools/align/homopolymere.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align copying src/obitools/align/ssearch.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align copying src/obitools/align/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/obo copying src/obitools/obo/parser.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/obo copying src/obitools/obo/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/obo creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/obo/go copying src/obitools/obo/go/parser.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/obo/go copying src/obitools/obo/go/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/obo/go creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/carto copying src/obitools/carto/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/carto creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/dnahash copying src/obitools/dnahash/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/dnahash creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/thermo copying src/obitools/thermo/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/thermo creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fasta copying src/obitools/fasta/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fasta creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/utils copying src/obitools/utils/bioseq.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/utils copying src/obitools/utils/crc64.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/utils copying src/obitools/utils/iterator.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/utils copying src/obitools/utils/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/utils creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/goa copying src/obitools/goa/parser.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/goa copying src/obitools/goa/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/goa creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecotag copying src/obitools/ecotag/parser.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecotag copying src/obitools/ecotag/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecotag creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph copying src/obitools/graph/rootedtree.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph copying src/obitools/graph/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph copying src/obitools/graph/dag.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph copying src/obitools/graph/tree.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/algorithms copying src/obitools/graph/algorithms/component.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/algorithms copying src/obitools/graph/algorithms/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/algorithms copying src/obitools/graph/algorithms/compact.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/algorithms copying src/obitools/graph/algorithms/clique.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/algorithms creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/layout copying src/obitools/graph/layout/radialtree.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/layout copying src/obitools/graph/layout/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/layout creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/writeBcTree.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/readFiles.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/findErrors.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/drawBcTree.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/calcBc.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/barcodecoverage creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fnaqual copying src/obitools/fnaqual/fasta.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fnaqual copying src/obitools/fnaqual/quality.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fnaqual copying src/obitools/fnaqual/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fnaqual creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/location copying src/obitools/location/feature.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/location copying src/obitools/location/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/location creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/solexa copying src/obitools/solexa/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/solexa creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/obischemas copying src/obitools/obischemas/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/obischemas copying src/obitools/obischemas/options.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/obischemas creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/obischemas/kb copying src/obitools/obischemas/kb/extern.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/obischemas/kb copying src/obitools/obischemas/kb/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/obischemas/kb creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/metabarcoding copying src/obitools/metabarcoding/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/metabarcoding copying src/obitools/metabarcoding/options.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/metabarcoding creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/phylogeny copying src/obitools/phylogeny/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/phylogeny copying src/obitools/phylogeny/newick.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/phylogeny creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tools copying src/obitools/tools/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tools copying src/obitools/tools/solexapairend.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tools creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/parallel copying src/obitools/parallel/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/parallel copying src/obitools/parallel/jobqueue.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/parallel creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/unit copying src/obitools/unit/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/unit creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/unit/obitools copying src/obitools/unit/obitools/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/unit/obitools creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/sequenceencoder copying src/obitools/sequenceencoder/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/sequenceencoder creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/eutils copying src/obitools/eutils/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/eutils creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/options copying src/obitools/options/bioseqedittag.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/options copying src/obitools/options/bioseqfilter.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/options copying src/obitools/options/taxonomyfilter.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/options copying src/obitools/options/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/options copying src/obitools/options/bioseqcutter.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/options creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tree copying src/obitools/tree/dot.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tree copying src/obitools/tree/svg.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tree copying src/obitools/tree/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tree copying src/obitools/tree/layout.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tree copying src/obitools/tree/unrooted.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tree copying src/obitools/tree/newick.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tree creating /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/statistics copying src/obitools/statistics/noncentralhypergeo.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/statistics copying src/obitools/statistics/hypergeometric.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/statistics copying src/obitools/statistics/__init__.py -> /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/statistics running build_ext obitools._obitools src/obitools/_obitools.pyx ok obitools.fastq._fastq src/obitools/fastq/_fastq.pyx ok obitools.format._format src/obitools/format/_format.pyx ok obitools.format.genericparser._genericparser src/obitools/format/genericparser/_genericparser.pyx ok obitools.word._binary src/obitools/word/_binary.pyx ok obitools.word._readindex src/obitools/word/_readindex.pyx ok obitools.profile._profile src/obitools/profile/_profile.pyx ok obitools.align._qsrassemble src/obitools/align/_qsrassemble.pyx ok obitools.align._codonnws src/obitools/align/_codonnws.pyx ok obitools.align._freeendgap src/obitools/align/_freeendgap.pyx ok obitools.align._dynamic src/obitools/align/_dynamic.pyx ok obitools.align._qsassemble src/obitools/align/_qsassemble.pyx ok obitools.align._upperbond src/obitools/align/_upperbond.pyx ok obitools.align._upperbond src/obitools/align/_upperbond.ext.1.c ok obitools.align._assemble src/obitools/align/_assemble.pyx ok obitools.align._gprofilenws src/obitools/align/_gprofilenws.pyx ok obitools.align._freeendgapfm src/obitools/align/_freeendgapfm.pyx ok obitools.align._nwsdnabyprot src/obitools/align/_nwsdnabyprot.pyx ok obitools.align._profilenws src/obitools/align/_profilenws.pyx ok obitools.align._nws src/obitools/align/_nws.pyx ok obitools.align._rassemble src/obitools/align/_rassemble.pyx ok obitools.align._lcs src/obitools/align/_lcs.pyx ok obitools.align._lcs src/obitools/align/_lcs.ext.1.c ok obitools.align._lcs src/obitools/align/_lcs.ext.2.c ok obitools.align._lcs src/obitools/align/_lcs.ext.3.c ok obitools.align._lcs src/obitools/align/_lcs.ext.4.c ok obitools.fasta._fasta src/obitools/fasta/_fasta.pyx ok obitools.utils._utils src/obitools/utils/_utils.pyx ok obitools.tools._solexapairend src/obitools/tools/_solexapairend.pyx ok obitools.options._bioseqfilter src/obitools/options/_bioseqfilter.pyx ok obitools.options._options src/obitools/options/_options.pyx ok #####> ['src/obitools/_obitools.pyx'] cythoning src/obitools/_obitools.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/_obitools.c creating build/temp.linux-amd64-2.7/pyrex creating build/temp.linux-amd64-2.7/pyrex/obitools /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/_obitools.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools._obitools' extension creating build/temp.linux-amd64-2.7/build creating build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7 creating build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex creating build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/_obitools.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/_obitools.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/_obitools.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/_obitools.so #####> ['src/obitools/fastq/_fastq.pyx'] cythoning src/obitools/fastq/_fastq.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/fastq/_fastq.c creating build/temp.linux-amd64-2.7/pyrex/obitools/fastq /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/fastq/_fastq.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.fastq._fastq' extension creating build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/fastq x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/fastq/_fastq.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/fastq/_fastq.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/fastq/_fastq.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fastq/_fastq.so #####> ['src/obitools/format/_format.pyx'] cythoning src/obitools/format/_format.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/format/_format.c creating build/temp.linux-amd64-2.7/pyrex/obitools/format /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/format/_format.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.format._format' extension creating build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/format x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/format/_format.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/format/_format.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/format/_format.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/_format.so #####> ['src/obitools/format/genericparser/_genericparser.pyx'] cythoning src/obitools/format/genericparser/_genericparser.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/format/genericparser/_genericparser.c creating build/temp.linux-amd64-2.7/pyrex/obitools/format/genericparser /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/format/genericparser/_genericparser.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.format.genericparser._genericparser' extension creating build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/format/genericparser x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/format/genericparser/_genericparser.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/format/genericparser/_genericparser.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/format/genericparser/_genericparser.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/genericparser/_genericparser.so #####> ['src/obitools/word/_binary.pyx'] cythoning src/obitools/word/_binary.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/word/_binary.c creating build/temp.linux-amd64-2.7/pyrex/obitools/word /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/word/_binary.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.word._binary' extension creating build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/word x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/word/_binary.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/word/_binary.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/word/_binary.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/word/_binary.so #####> ['src/obitools/word/_readindex.pyx'] cythoning src/obitools/word/_readindex.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/word/_readindex.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/word/_readindex.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.word._readindex' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -Isrc/obitools/word -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/word/_readindex.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/word/_readindex.o -msse2 build/temp.linux-amd64-2.7/pyrex/obitools/word/_readindex.c: In function '__pyx_pf_8obitools_4word_10_readindex_9ReadIndex_10indexWords': build/temp.linux-amd64-2.7/pyrex/obitools/word/_readindex.c:5790:3: warning: implicit declaration of function 'heapsort'; did you mean 'hypot'? [-Wimplicit-function-declaration] heapsort(__pyx_v_self->_wordlist, __pyx_v_i, (sizeof(pobinuc)), __pyx_f_8obitools_4word_10_readindex_cmpwords); ^~~~~~~~ hypot build/temp.linux-amd64-2.7/pyrex/obitools/word/_readindex.c: In function '__pyx_pf_8obitools_4word_10_readindex_9ReadIndex_8load': build/temp.linux-amd64-2.7/pyrex/obitools/word/_readindex.c:5011:10: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] (void)(fread((&__pyx_v_ltbuffer), (sizeof(size_t)), 1, __pyx_v_f)); ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ build/temp.linux-amd64-2.7/pyrex/obitools/word/_readindex.c:5069:10: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] (void)(fread(__pyx_v_tcbuffer, 1, __pyx_v_ltbuffer, __pyx_v_f)); ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/word/_readindex.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/word/_readindex.so #####> ['src/obitools/profile/_profile.pyx'] cythoning src/obitools/profile/_profile.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/profile/_profile.c creating build/temp.linux-amd64-2.7/pyrex/obitools/profile /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/profile/_profile.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.profile._profile' extension creating build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/profile x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/profile/_profile.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/profile/_profile.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/profile/_profile.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/profile/_profile.so #####> ['src/obitools/align/_qsrassemble.pyx'] cythoning src/obitools/align/_qsrassemble.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/align/_qsrassemble.c creating build/temp.linux-amd64-2.7/pyrex/obitools/align /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/align/_qsrassemble.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.align._qsrassemble' extension creating build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/align/_qsrassemble.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_qsrassemble.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_qsrassemble.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_qsrassemble.so #####> ['src/obitools/align/_codonnws.pyx'] cythoning src/obitools/align/_codonnws.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/align/_codonnws.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/align/_codonnws.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.align._codonnws' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/align/_codonnws.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_codonnws.o build/temp.linux-amd64-2.7/pyrex/obitools/align/_codonnws.c: In function '__pyx_f_8obitools_5align_9_codonnws_8CodonNWS_backtrack': build/temp.linux-amd64-2.7/pyrex/obitools/align/_codonnws.c:26236:104: warning: '__pyx_v_p' may be used uninitialized in this function [-Wmaybe-uninitialized] (__pyx_v_self->__pyx_base.__pyx_base.path->path[__pyx_v_self->__pyx_base.__pyx_base.path->length]) = __pyx_v_p; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_codonnws.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_codonnws.so #####> ['src/obitools/align/_freeendgap.pyx'] cythoning src/obitools/align/_freeendgap.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/align/_freeendgap.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/align/_freeendgap.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.align._freeendgap' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/align/_freeendgap.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_freeendgap.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_freeendgap.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_freeendgap.so #####> ['src/obitools/align/_dynamic.pyx'] cythoning src/obitools/align/_dynamic.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/align/_dynamic.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/align/_dynamic.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.align._dynamic' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/align/_dynamic.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_dynamic.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_dynamic.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_dynamic.so #####> ['src/obitools/align/_qsassemble.pyx'] cythoning src/obitools/align/_qsassemble.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/align/_qsassemble.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/align/_qsassemble.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.align._qsassemble' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/align/_qsassemble.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_qsassemble.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_qsassemble.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_qsassemble.so #####> ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] cythoning src/obitools/align/_upperbond.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/align/_upperbond.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/align/_upperbond.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.align._upperbond' extension creating build/temp.linux-amd64-2.7/src creating build/temp.linux-amd64-2.7/src/obitools creating build/temp.linux-amd64-2.7/src/obitools/align x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -Isrc/obitools/align -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/align/_upperbond.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_upperbond.o -msse2 x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -Isrc/obitools/align -I/usr/include/python2.7 -c src/obitools/align/_upperbond.ext.1.c -o build/temp.linux-amd64-2.7/src/obitools/align/_upperbond.ext.1.o -msse2 src/obitools/align/_upperbond.ext.1.c: In function 'buildTable': src/obitools/align/_upperbond.ext.1.c:96:5: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (zero.c[0]+zero.c[1]+zero.c[2]+zero.c[3]==0) ^ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_upperbond.o build/temp.linux-amd64-2.7/src/obitools/align/_upperbond.ext.1.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_upperbond.so #####> ['src/obitools/align/_assemble.pyx'] cythoning src/obitools/align/_assemble.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/align/_assemble.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/align/_assemble.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.align._assemble' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/align/_assemble.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_assemble.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_assemble.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_assemble.so #####> ['src/obitools/align/_gprofilenws.pyx'] cythoning src/obitools/align/_gprofilenws.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/align/_gprofilenws.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/align/_gprofilenws.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.align._gprofilenws' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/align/_gprofilenws.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_gprofilenws.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_gprofilenws.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_gprofilenws.so #####> ['src/obitools/align/_freeendgapfm.pyx'] cythoning src/obitools/align/_freeendgapfm.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/align/_freeendgapfm.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/align/_freeendgapfm.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.align._freeendgapfm' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/align/_freeendgapfm.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_freeendgapfm.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_freeendgapfm.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_freeendgapfm.so #####> ['src/obitools/align/_nwsdnabyprot.pyx'] cythoning src/obitools/align/_nwsdnabyprot.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/align/_nwsdnabyprot.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/align/_nwsdnabyprot.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.align._nwsdnabyprot' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/align/_nwsdnabyprot.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_nwsdnabyprot.o build/temp.linux-amd64-2.7/pyrex/obitools/align/_nwsdnabyprot.c: In function '__pyx_f_8obitools_5align_13_nwsdnabyprot_12NWSDNAByProt_doAlignment': build/temp.linux-amd64-2.7/pyrex/obitools/align/_nwsdnabyprot.c:4711:29: warning: '__pyx_v_smatrix' may be used uninitialized in this function [-Wmaybe-uninitialized] __pyx_r = (__pyx_v_smatrix[__pyx_v_idx]).score; ^ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_nwsdnabyprot.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_nwsdnabyprot.so #####> ['src/obitools/align/_profilenws.pyx'] cythoning src/obitools/align/_profilenws.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/align/_profilenws.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/align/_profilenws.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.align._profilenws' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/align/_profilenws.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_profilenws.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_profilenws.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_profilenws.so #####> ['src/obitools/align/_nws.pyx'] cythoning src/obitools/align/_nws.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/align/_nws.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/align/_nws.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.align._nws' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/align/_nws.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_nws.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_nws.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_nws.so #####> ['src/obitools/align/_rassemble.pyx'] cythoning src/obitools/align/_rassemble.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/align/_rassemble.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/align/_rassemble.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.align._rassemble' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/align/_rassemble.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_rassemble.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_rassemble.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_rassemble.so #####> ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c'] cythoning src/obitools/align/_lcs.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/align/_lcs.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/align/_lcs.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.align._lcs' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -Isrc/obitools/align -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/align/_lcs.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_lcs.o -msse2 x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -Isrc/obitools/align -I/usr/include/python2.7 -c src/obitools/align/_lcs.ext.1.c -o build/temp.linux-amd64-2.7/src/obitools/align/_lcs.ext.1.o -msse2 src/obitools/align/_lcs.ext.1.c: In function 'simpleLCS': src/obitools/align/_lcs.ext.1.c:159:18: warning: 'pl' may be used uninitialized in this function [-Wmaybe-uninitialized] if(lpath) *lpath=pl; ~~~~~~^~~ src/obitools/align/_lcs.ext.1.c:166:9: warning: 'sl' may be used uninitialized in this function [-Wmaybe-uninitialized] return lcs; ^~~ x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -Isrc/obitools/align -I/usr/include/python2.7 -c src/obitools/align/_lcs.ext.2.c -o build/temp.linux-amd64-2.7/src/obitools/align/_lcs.ext.2.o -msse2 In file included from src/obitools/align/_lcs.ext.2.c:34: src/obitools/align/_lcs_fast.h:8:14: warning: 'printreg' defined but not used [-Wunused-function] static void printreg(VTYPE r) ^~~~~~~~ x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -Isrc/obitools/align -I/usr/include/python2.7 -c src/obitools/align/_lcs.ext.3.c -o build/temp.linux-amd64-2.7/src/obitools/align/_lcs.ext.3.o -msse2 In file included from src/obitools/align/_lcs.ext.3.c:34: src/obitools/align/_lcs_fast.h:8:14: warning: 'printreg' defined but not used [-Wunused-function] static void printreg(VTYPE r) ^~~~~~~~ x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -Isrc/obitools/align -I/usr/include/python2.7 -c src/obitools/align/_lcs.ext.4.c -o build/temp.linux-amd64-2.7/src/obitools/align/_lcs.ext.4.o -msse2 src/obitools/align/_lcs.ext.4.c: In function 'buildTable': src/obitools/align/_lcs.ext.4.c:96:5: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (zero.c[0]+zero.c[1]+zero.c[2]+zero.c[3]==0) ^ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/align/_lcs.o build/temp.linux-amd64-2.7/src/obitools/align/_lcs.ext.1.o build/temp.linux-amd64-2.7/src/obitools/align/_lcs.ext.2.o build/temp.linux-amd64-2.7/src/obitools/align/_lcs.ext.3.o build/temp.linux-amd64-2.7/src/obitools/align/_lcs.ext.4.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_lcs.so #####> ['src/obitools/fasta/_fasta.pyx'] cythoning src/obitools/fasta/_fasta.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/fasta/_fasta.c creating build/temp.linux-amd64-2.7/pyrex/obitools/fasta /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/fasta/_fasta.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.fasta._fasta' extension creating build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/fasta x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/fasta/_fasta.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/fasta/_fasta.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/fasta/_fasta.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fasta/_fasta.so #####> ['src/obitools/utils/_utils.pyx'] cythoning src/obitools/utils/_utils.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/utils/_utils.c creating build/temp.linux-amd64-2.7/pyrex/obitools/utils /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/utils/_utils.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.utils._utils' extension creating build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/utils x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/utils/_utils.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/utils/_utils.o build/temp.linux-amd64-2.7/pyrex/obitools/utils/_utils.c: In function '__pyx_f_8obitools_5utils_6_utils_progressBar': build/temp.linux-amd64-2.7/pyrex/obitools/utils/_utils.c:3621:57: warning: field precision specifier '.*' expects argument of type 'int', but argument 5 has type 'long long unsigned int' [-Wformat=] ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %d days %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.0), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_days, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); ~~^~ ~~~~~~~~~~~~~~~~ build/temp.linux-amd64-2.7/pyrex/obitools/utils/_utils.c:3621:63: warning: field precision specifier '.*' expects argument of type 'int', but argument 8 has type 'long long unsigned int' [-Wformat=] ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %d days %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.0), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_days, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); ~~^~ ~~~~~~~~~~~~~~~~~~~~~~~ build/temp.linux-amd64-2.7/pyrex/obitools/utils/_utils.c:3662:57: warning: field precision specifier '.*' expects argument of type 'int', but argument 5 has type 'long long unsigned int' [-Wformat=] ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); ~~^~ ~~~~~~~~~~~~~~~~ build/temp.linux-amd64-2.7/pyrex/obitools/utils/_utils.c:3662:63: warning: field precision specifier '.*' expects argument of type 'int', but argument 8 has type 'long long unsigned int' [-Wformat=] ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); ~~^~ ~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/utils/_utils.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/utils/_utils.so #####> ['src/obitools/tools/_solexapairend.pyx'] cythoning src/obitools/tools/_solexapairend.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/tools/_solexapairend.c creating build/temp.linux-amd64-2.7/pyrex/obitools/tools /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/tools/_solexapairend.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.tools._solexapairend' extension creating build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/tools x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/tools/_solexapairend.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/tools/_solexapairend.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/tools/_solexapairend.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tools/_solexapairend.so #####> ['src/obitools/options/_bioseqfilter.pyx'] cythoning src/obitools/options/_bioseqfilter.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/options/_bioseqfilter.c creating build/temp.linux-amd64-2.7/pyrex/obitools/options /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/options/_bioseqfilter.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.options._bioseqfilter' extension creating build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/options x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/options/_bioseqfilter.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/options/_bioseqfilter.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/options/_bioseqfilter.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/options/_bioseqfilter.so #####> ['src/obitools/options/_options.pyx'] cythoning src/obitools/options/_options.pyx to build/temp.linux-amd64-2.7/pyrex/obitools/options/_options.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.12+dfsg/src/obitools/options/_options.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'obitools.options._options' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DLITTLE_END -I/usr/include/python2.7 -c build/temp.linux-amd64-2.7/pyrex/obitools/options/_options.c -o build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/options/_options.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/temp.linux-amd64-2.7/pyrex/obitools/options/_options.o -o /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/options/_options.so running build_scripts creating build/scripts-2.7 creating build/raw_scripts Store the raw script src/ecotag.py -> build/raw_scripts/ecotag.py copying src/ecotag.py -> build/raw_scripts copying and adjusting src/ecotag.py -> build/scripts-2.7 Store the raw script src/oligotag.py -> build/raw_scripts/oligotag.py copying src/oligotag.py -> build/raw_scripts copying and adjusting src/oligotag.py -> build/scripts-2.7 Store the raw script src/obiuniq.py -> build/raw_scripts/obiuniq.py copying src/obiuniq.py -> build/raw_scripts copying and adjusting src/obiuniq.py -> build/scripts-2.7 Store the raw script src/obitaxonomy.py -> build/raw_scripts/obitaxonomy.py copying src/obitaxonomy.py -> build/raw_scripts copying and adjusting src/obitaxonomy.py -> build/scripts-2.7 Store the raw script src/obitail.py -> build/raw_scripts/obitail.py copying src/obitail.py -> build/raw_scripts copying and adjusting src/obitail.py -> build/scripts-2.7 Store the raw script src/obitab.py -> build/raw_scripts/obitab.py copying src/obitab.py -> build/raw_scripts copying and adjusting src/obitab.py -> build/scripts-2.7 Store the raw script src/obistat.py -> build/raw_scripts/obistat.py copying src/obistat.py -> build/raw_scripts copying and adjusting src/obistat.py -> build/scripts-2.7 Store the raw script src/obisplit.py -> build/raw_scripts/obisplit.py copying src/obisplit.py -> build/raw_scripts copying and adjusting src/obisplit.py -> build/scripts-2.7 Store the raw script src/obisort.py -> build/raw_scripts/obisort.py copying src/obisort.py -> build/raw_scripts copying and adjusting src/obisort.py -> build/scripts-2.7 Store the raw script src/obisilva.py -> build/raw_scripts/obisilva.py copying src/obisilva.py -> build/raw_scripts copying and adjusting src/obisilva.py -> build/scripts-2.7 Store the raw script src/obiselect.py -> build/raw_scripts/obiselect.py copying src/obiselect.py -> build/raw_scripts copying and adjusting src/obiselect.py -> build/scripts-2.7 Store the raw script src/obisample.py -> build/raw_scripts/obisample.py copying src/obisample.py -> build/raw_scripts copying and adjusting src/obisample.py -> build/scripts-2.7 Store the raw script src/obipr2.py -> build/raw_scripts/obipr2.py copying src/obipr2.py -> build/raw_scripts copying and adjusting src/obipr2.py -> build/scripts-2.7 Store the raw script src/obijoinpairedend.py -> build/raw_scripts/obijoinpairedend.py copying src/obijoinpairedend.py -> build/raw_scripts copying and adjusting src/obijoinpairedend.py -> build/scripts-2.7 Store the raw script src/obihead.py -> build/raw_scripts/obihead.py copying src/obihead.py -> build/raw_scripts copying and adjusting src/obihead.py -> build/scripts-2.7 Store the raw script src/obigrep.py -> build/raw_scripts/obigrep.py copying src/obigrep.py -> build/raw_scripts copying and adjusting src/obigrep.py -> build/scripts-2.7 Store the raw script src/obiextract.py -> build/raw_scripts/obiextract.py copying src/obiextract.py -> build/raw_scripts copying and adjusting src/obiextract.py -> build/scripts-2.7 Store the raw script src/obidistribute.py -> build/raw_scripts/obidistribute.py copying src/obidistribute.py -> build/raw_scripts copying and adjusting src/obidistribute.py -> build/scripts-2.7 Store the raw script src/obicut.py -> build/raw_scripts/obicut.py copying src/obicut.py -> build/raw_scripts copying and adjusting src/obicut.py -> build/scripts-2.7 Store the raw script src/obicount.py -> build/raw_scripts/obicount.py copying src/obicount.py -> build/raw_scripts copying and adjusting src/obicount.py -> build/scripts-2.7 Store the raw script src/obiconvert.py -> build/raw_scripts/obiconvert.py copying src/obiconvert.py -> build/raw_scripts copying and adjusting src/obiconvert.py -> build/scripts-2.7 Store the raw script src/obicomplement.py -> build/raw_scripts/obicomplement.py copying src/obicomplement.py -> build/raw_scripts copying and adjusting src/obicomplement.py -> build/scripts-2.7 Store the raw script src/obiclean.py -> build/raw_scripts/obiclean.py copying src/obiclean.py -> build/raw_scripts copying and adjusting src/obiclean.py -> build/scripts-2.7 Store the raw script src/obiannotate.py -> build/raw_scripts/obiannotate.py copying src/obiannotate.py -> build/raw_scripts copying and adjusting src/obiannotate.py -> build/scripts-2.7 Store the raw script src/obiaddtaxids.py -> build/raw_scripts/obiaddtaxids.py copying src/obiaddtaxids.py -> build/raw_scripts copying and adjusting src/obiaddtaxids.py -> build/scripts-2.7 Store the raw script src/ngsfilter.py -> build/raw_scripts/ngsfilter.py copying src/ngsfilter.py -> build/raw_scripts copying and adjusting src/ngsfilter.py -> build/scripts-2.7 Store the raw script src/illuminapairedend.py -> build/raw_scripts/illuminapairedend.py copying src/illuminapairedend.py -> build/raw_scripts copying and adjusting src/illuminapairedend.py -> build/scripts-2.7 Store the raw script src/ecotaxstat.py -> build/raw_scripts/ecotaxstat.py copying src/ecotaxstat.py -> build/raw_scripts copying and adjusting src/ecotaxstat.py -> build/scripts-2.7 Store the raw script src/ecotaxspecificity.py -> build/raw_scripts/ecotaxspecificity.py copying src/ecotaxspecificity.py -> build/raw_scripts copying and adjusting src/ecotaxspecificity.py -> build/scripts-2.7 Store the raw script src/ecodbtaxstat.py -> build/raw_scripts/ecodbtaxstat.py copying src/ecodbtaxstat.py -> build/raw_scripts copying and adjusting src/ecodbtaxstat.py -> build/scripts-2.7 Store the raw script src/ali2consensus.py -> build/raw_scripts/ali2consensus.py copying src/ali2consensus.py -> build/raw_scripts copying and adjusting src/ali2consensus.py -> build/scripts-2.7 Store the raw script src/extractreads2.py -> build/raw_scripts/extractreads2.py copying src/extractreads2.py -> build/raw_scripts copying and adjusting src/extractreads2.py -> build/scripts-2.7 Store the raw script src/extractreads.py -> build/raw_scripts/extractreads.py copying src/extractreads.py -> build/raw_scripts copying and adjusting src/extractreads.py -> build/scripts-2.7 Store the raw script src/obisubset.py -> build/raw_scripts/obisubset.py copying src/obisubset.py -> build/raw_scripts copying and adjusting src/obisubset.py -> build/scripts-2.7 changing mode of build/scripts-2.7/ecotag from 664 to 775 changing mode of build/scripts-2.7/oligotag from 664 to 775 changing mode of build/scripts-2.7/obiuniq from 664 to 775 changing mode of build/scripts-2.7/obitaxonomy from 664 to 775 changing mode of build/scripts-2.7/obitail from 664 to 775 changing mode of build/scripts-2.7/obitab from 664 to 775 changing mode of build/scripts-2.7/obistat from 664 to 775 changing mode of build/scripts-2.7/obisplit from 664 to 775 changing mode of build/scripts-2.7/obisort from 664 to 775 changing mode of build/scripts-2.7/obisilva from 664 to 775 changing mode of build/scripts-2.7/obiselect from 664 to 775 changing mode of build/scripts-2.7/obisample from 664 to 775 changing mode of build/scripts-2.7/obipr2 from 664 to 775 changing mode of build/scripts-2.7/obijoinpairedend from 664 to 775 changing mode of build/scripts-2.7/obihead from 664 to 775 changing mode of build/scripts-2.7/obigrep from 664 to 775 changing mode of build/scripts-2.7/obiextract from 664 to 775 changing mode of build/scripts-2.7/obidistribute from 664 to 775 changing mode of build/scripts-2.7/obicut from 664 to 775 changing mode of build/scripts-2.7/obicount from 664 to 775 changing mode of build/scripts-2.7/obiconvert from 664 to 775 changing mode of build/scripts-2.7/obicomplement from 664 to 775 changing mode of build/scripts-2.7/obiclean from 664 to 775 changing mode of build/scripts-2.7/obiannotate from 664 to 775 changing mode of build/scripts-2.7/obiaddtaxids from 664 to 775 changing mode of build/scripts-2.7/ngsfilter from 664 to 775 changing mode of build/scripts-2.7/illuminapairedend from 664 to 775 changing mode of build/scripts-2.7/ecotaxstat from 664 to 775 changing mode of build/scripts-2.7/ecotaxspecificity from 664 to 775 changing mode of build/scripts-2.7/ecodbtaxstat from 664 to 775 changing mode of build/scripts-2.7/ali2consensus from 664 to 775 changing mode of build/scripts-2.7/extractreads2 from 664 to 775 changing mode of build/scripts-2.7/extractreads from 664 to 775 changing mode of build/scripts-2.7/obisubset from 664 to 775 running build_sphinx Running Sphinx v1.8.4 making output directory... building [mo]: targets for 0 po files that are out of date building [html]: targets for 132 source files that are out of date updating environment: 132 added, 0 changed, 0 removed reading sources... [ 0%] annotations reading sources... [ 1%] attributes reading sources... [ 2%] attributes/ali_dir reading sources... [ 3%] attributes/ali_length reading sources... [ 3%] attributes/avg_quality reading sources... [ 4%] attributes/best_identity reading sources... [ 5%] attributes/best_match reading sources... [ 6%] attributes/class reading sources... [ 6%] attributes/cluster reading sources... [ 7%] attributes/complemented reading sources... [ 8%] attributes/count reading sources... [ 9%] attributes/cut reading sources... [ 9%] attributes/direction reading sources... [ 10%] attributes/distance reading sources... [ 11%] attributes/error reading sources... [ 12%] attributes/experiment reading sources... [ 12%] attributes/family reading sources... [ 13%] attributes/family_name reading sources... [ 14%] attributes/forward_error reading sources... [ 15%] attributes/forward_match reading sources... [ 15%] attributes/forward_primer reading sources... [ 16%] attributes/forward_score reading sources... [ 17%] attributes/forward_tag reading sources... [ 18%] attributes/forward_tm reading sources... [ 18%] attributes/genus reading sources... [ 19%] attributes/genus_name reading sources... [ 20%] attributes/head_quality reading sources... [ 21%] attributes/id_status reading sources... [ 21%] attributes/merged reading sources... [ 22%] attributes/merged_star reading sources... [ 23%] attributes/mid_quality reading sources... [ 24%] attributes/mode reading sources... [ 25%] attributes/obiclean_cluster reading sources... [ 25%] attributes/obiclean_count reading sources... [ 26%] attributes/obiclean_head reading sources... [ 27%] attributes/obiclean_headcount reading sources... [ 28%] attributes/obiclean_internalcount reading sources... [ 28%] attributes/obiclean_samplecount reading sources... [ 29%] attributes/obiclean_singletoncount reading sources... [ 30%] attributes/obiclean_status reading sources... 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The manual pages are in build/sphinx/man. dh_auto_test -O--buildsystem=pybuild I: pybuild base:217: cd /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build; python2.7 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python2,sphinxdoc --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/obitools-1.2.12+dfsg' PYTHONPATH=/build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build \ http_proxy='127.0.0.1:9' \ dh_auto_install I: pybuild base:217: /usr/bin/python setup.py install --root /build/obitools-1.2.12+dfsg/debian/obitools ['src/obitools/_obitools.pyx'] ['src/obitools/fastq/_fastq.pyx'] ['src/obitools/format/_format.pyx'] ['src/obitools/format/genericparser/_genericparser.pyx'] ['src/obitools/word/_binary.pyx'] @@@@> ['src/obitools/word/_readindex.h'] ['src/obitools/word/_readindex.pyx'] ['src/obitools/profile/_profile.pyx'] ['src/obitools/align/_qsrassemble.pyx'] ['src/obitools/align/_codonnws.pyx'] ['src/obitools/align/_freeendgap.pyx'] ['src/obitools/align/_dynamic.pyx'] ['src/obitools/align/_qsassemble.pyx'] @@@@> ['src/obitools/align/_sse.h'] ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] ['src/obitools/align/_assemble.pyx'] ['src/obitools/align/_gprofilenws.pyx'] ['src/obitools/align/_freeendgapfm.pyx'] ['src/obitools/align/_nwsdnabyprot.pyx'] ['src/obitools/align/_profilenws.pyx'] ['src/obitools/align/_nws.pyx'] ['src/obitools/align/_rassemble.pyx'] @@@@> ['src/obitools/align/_lcs.h'] ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c'] ['src/obitools/fasta/_fasta.pyx'] ['src/obitools/utils/_utils.pyx'] ['src/obitools/tools/_solexapairend.pyx'] ['src/obitools/options/_bioseqfilter.pyx'] ['src/obitools/options/_options.pyx'] running install Running obidistutils install process running build Running obidistutils build process running littlebigman building 'littlebigman' program x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/obitools-1.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c distutils.ext/src/littlebigman.c -o build/temp.linux-amd64-2.7/distutils.ext/src/littlebigman.o -msse2 distutils.ext/src/littlebigman.c: In function 'main': distutils.ext/src/littlebigman.c:20:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ distutils.ext/src/littlebigman.c:23:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' return 0; ^~~~~~ x86_64-linux-gnu-gcc -pthread build/temp.linux-amd64-2.7/distutils.ext/src/littlebigman.o -o build/temp.linux-amd64-2.7/littlebigman Your CPU is in mode : -DLITTLE_END running build_py running build_ext obitools._obitools src/obitools/_obitools.pyx ok obitools.fastq._fastq src/obitools/fastq/_fastq.pyx ok obitools.format._format src/obitools/format/_format.pyx ok obitools.format.genericparser._genericparser src/obitools/format/genericparser/_genericparser.pyx ok obitools.word._binary src/obitools/word/_binary.pyx ok obitools.word._readindex src/obitools/word/_readindex.pyx ok obitools.profile._profile src/obitools/profile/_profile.pyx ok obitools.align._qsrassemble src/obitools/align/_qsrassemble.pyx ok obitools.align._codonnws src/obitools/align/_codonnws.pyx ok obitools.align._freeendgap src/obitools/align/_freeendgap.pyx ok obitools.align._dynamic src/obitools/align/_dynamic.pyx ok obitools.align._qsassemble src/obitools/align/_qsassemble.pyx ok obitools.align._upperbond src/obitools/align/_upperbond.pyx ok obitools.align._upperbond src/obitools/align/_upperbond.ext.1.c ok obitools.align._assemble src/obitools/align/_assemble.pyx ok obitools.align._gprofilenws src/obitools/align/_gprofilenws.pyx ok obitools.align._freeendgapfm src/obitools/align/_freeendgapfm.pyx ok obitools.align._nwsdnabyprot src/obitools/align/_nwsdnabyprot.pyx ok obitools.align._profilenws src/obitools/align/_profilenws.pyx ok obitools.align._nws src/obitools/align/_nws.pyx ok obitools.align._rassemble src/obitools/align/_rassemble.pyx ok obitools.align._lcs src/obitools/align/_lcs.pyx ok obitools.align._lcs src/obitools/align/_lcs.ext.1.c ok obitools.align._lcs src/obitools/align/_lcs.ext.2.c ok obitools.align._lcs src/obitools/align/_lcs.ext.3.c ok obitools.align._lcs src/obitools/align/_lcs.ext.4.c ok obitools.fasta._fasta src/obitools/fasta/_fasta.pyx ok obitools.utils._utils src/obitools/utils/_utils.pyx ok obitools.tools._solexapairend src/obitools/tools/_solexapairend.pyx ok obitools.options._bioseqfilter src/obitools/options/_bioseqfilter.pyx ok obitools.options._options src/obitools/options/_options.pyx ok #####> ['src/obitools/_obitools.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/_obitools.c' Cython extension (up-to-date) #####> ['src/obitools/fastq/_fastq.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/fastq/_fastq.c' Cython extension (up-to-date) #####> ['src/obitools/format/_format.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/format/_format.c' Cython extension (up-to-date) #####> ['src/obitools/format/genericparser/_genericparser.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/format/genericparser/_genericparser.c' Cython extension (up-to-date) #####> ['src/obitools/word/_binary.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/word/_binary.c' Cython extension (up-to-date) #####> ['src/obitools/word/_readindex.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/word/_readindex.c' Cython extension (up-to-date) #####> ['src/obitools/profile/_profile.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/profile/_profile.c' Cython extension (up-to-date) #####> ['src/obitools/align/_qsrassemble.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/align/_qsrassemble.c' Cython extension (up-to-date) #####> ['src/obitools/align/_codonnws.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/align/_codonnws.c' Cython extension (up-to-date) #####> ['src/obitools/align/_freeendgap.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/align/_freeendgap.c' Cython extension (up-to-date) #####> ['src/obitools/align/_dynamic.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/align/_dynamic.c' Cython extension (up-to-date) #####> ['src/obitools/align/_qsassemble.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/align/_qsassemble.c' Cython extension (up-to-date) #####> ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/align/_upperbond.c' Cython extension (up-to-date) #####> ['src/obitools/align/_assemble.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/align/_assemble.c' Cython extension (up-to-date) #####> ['src/obitools/align/_gprofilenws.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/align/_gprofilenws.c' Cython extension (up-to-date) #####> ['src/obitools/align/_freeendgapfm.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/align/_freeendgapfm.c' Cython extension (up-to-date) #####> ['src/obitools/align/_nwsdnabyprot.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/align/_nwsdnabyprot.c' Cython extension (up-to-date) #####> ['src/obitools/align/_profilenws.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/align/_profilenws.c' Cython extension (up-to-date) #####> ['src/obitools/align/_nws.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/align/_nws.c' Cython extension (up-to-date) #####> ['src/obitools/align/_rassemble.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/align/_rassemble.c' Cython extension (up-to-date) #####> ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/align/_lcs.c' Cython extension (up-to-date) #####> ['src/obitools/fasta/_fasta.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/fasta/_fasta.c' Cython extension (up-to-date) #####> ['src/obitools/utils/_utils.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/utils/_utils.c' Cython extension (up-to-date) #####> ['src/obitools/tools/_solexapairend.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/tools/_solexapairend.c' Cython extension (up-to-date) #####> ['src/obitools/options/_bioseqfilter.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/options/_bioseqfilter.c' Cython extension (up-to-date) #####> ['src/obitools/options/_options.pyx'] skipping 'build/temp.linux-amd64-2.7/pyrex/obitools/options/_options.c' Cython extension (up-to-date) running build_scripts running build_sphinx Running Sphinx v1.8.4 loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [html]: targets for 0 source files that are out of date updating environment: [] 0 added, 3 changed, 0 removed reading sources... [ 33%] fastq reading sources... [ 66%] welcome reading sources... [100%] wolves /build/obitools-1.2.12+dfsg/doc/sphinx/source/fastq.rst:156: WARNING: Footnote [2] is not referenced. /build/obitools-1.2.12+dfsg/doc/sphinx/source/fastq.rst:160: WARNING: image file not readable: Probabilitymetrics.png /build/obitools-1.2.12+dfsg/doc/sphinx/source/welcome.rst:107: WARNING: Inline literal start-string without end-string. /build/obitools-1.2.12+dfsg/doc/sphinx/source/welcome.rst:63: WARNING: download file not readable: /build/obitools-1.2.12+dfsg/get_obitools/get-obitools.py /build/obitools-1.2.12+dfsg/doc/sphinx/source/welcome.rst:66: WARNING: download file not readable: /build/obitools-1.2.12+dfsg/get_obitools/get-obitools.py /build/obitools-1.2.12+dfsg/doc/sphinx/source/welcome.rst:103: WARNING: download file not readable: /build/obitools-1.2.12+dfsg/get_obitools/get-obitools.py /build/obitools-1.2.12+dfsg/doc/sphinx/source/wolves.rst:17: WARNING: download file not readable: /build/obitools-1.2.12+dfsg/wolf_tutorial.zip looking for now-outdated files... none found pickling environment... done checking consistency... /build/obitools-1.2.12+dfsg/doc/sphinx/source/embl.rst: WARNING: document isn't included in any toctree /build/obitools-1.2.12+dfsg/doc/sphinx/source/genbank.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 14%] fastq writing output... [ 28%] formats writing output... [ 42%] index writing output... [ 57%] introduction writing output... [ 71%] tutorials writing output... [ 85%] welcome writing output... [100%] wolves WARNING: LaTeX command 'latex' cannot be run (needed for math display), check the imgmath_latex setting /build/obitools-1.2.12+dfsg/doc/sphinx/source/welcome.rst:401: WARNING: a suitable image for html builder not found: fig-Pipeline.* /build/obitools-1.2.12+dfsg/doc/sphinx/source/welcome.rst:403: WARNING: a suitable image for html builder not found: fig-Record.* generating indices... genindex py-modindex writing additional pages... search copying static files... WARNING: html_static_path entry u'/build/obitools-1.2.12+dfsg/doc/sphinx/source/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 13 warnings. The HTML pages are in build/sphinx/html. Running Sphinx v1.8.4 loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [epub]: targets for 0 source files that are out of date updating environment: [] 0 added, 3 changed, 0 removed reading sources... [ 33%] fastq reading sources... [ 66%] welcome reading sources... [100%] wolves /build/obitools-1.2.12+dfsg/doc/sphinx/source/fastq.rst:156: WARNING: Footnote [2] is not referenced. /build/obitools-1.2.12+dfsg/doc/sphinx/source/fastq.rst:160: WARNING: image file not readable: Probabilitymetrics.png /build/obitools-1.2.12+dfsg/doc/sphinx/source/welcome.rst:107: WARNING: Inline literal start-string without end-string. /build/obitools-1.2.12+dfsg/doc/sphinx/source/welcome.rst:63: WARNING: download file not readable: /build/obitools-1.2.12+dfsg/get_obitools/get-obitools.py /build/obitools-1.2.12+dfsg/doc/sphinx/source/welcome.rst:66: WARNING: download file not readable: /build/obitools-1.2.12+dfsg/get_obitools/get-obitools.py /build/obitools-1.2.12+dfsg/doc/sphinx/source/welcome.rst:103: WARNING: download file not readable: /build/obitools-1.2.12+dfsg/get_obitools/get-obitools.py /build/obitools-1.2.12+dfsg/doc/sphinx/source/wolves.rst:17: WARNING: download file not readable: /build/obitools-1.2.12+dfsg/wolf_tutorial.zip looking for now-outdated files... none found pickling environment... done checking consistency... /build/obitools-1.2.12+dfsg/doc/sphinx/source/embl.rst: WARNING: document isn't included in any toctree /build/obitools-1.2.12+dfsg/doc/sphinx/source/genbank.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 14%] fastq writing output... [ 28%] formats writing output... [ 42%] index writing output... [ 57%] introduction writing output... [ 71%] tutorials writing output... [ 85%] welcome writing output... [100%] wolves WARNING: LaTeX command 'latex' cannot be run (needed for math display), check the imgmath_latex setting /build/obitools-1.2.12+dfsg/doc/sphinx/source/welcome.rst:401: WARNING: a suitable image for epub builder not found: fig-Pipeline.* /build/obitools-1.2.12+dfsg/doc/sphinx/source/welcome.rst:403: WARNING: a suitable image for epub builder not found: fig-Record.* generating indices... genindex py-modindex writing additional pages... copying static files... WARNING: html_static_path entry u'/build/obitools-1.2.12+dfsg/doc/sphinx/source/_static' does not exist done copying extra files... done writing mimetype file... writing META-INF/container.xml file... writing content.opf file... writing nav.xhtml file... writing toc.ncx file... writing OBITools.epub file... build succeeded, 13 warnings. The ePub file is in build/sphinx/epub. Running Sphinx v1.8.4 loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [man]: all manpages updating environment: [] 0 added, 3 changed, 0 removed reading sources... [ 33%] fastq reading sources... [ 66%] welcome reading sources... [100%] wolves /build/obitools-1.2.12+dfsg/doc/sphinx/source/fastq.rst:156: WARNING: Footnote [2] is not referenced. /build/obitools-1.2.12+dfsg/doc/sphinx/source/fastq.rst:160: WARNING: image file not readable: Probabilitymetrics.png /build/obitools-1.2.12+dfsg/doc/sphinx/source/welcome.rst:107: WARNING: Inline literal start-string without end-string. /build/obitools-1.2.12+dfsg/doc/sphinx/source/welcome.rst:63: WARNING: download file not readable: /build/obitools-1.2.12+dfsg/get_obitools/get-obitools.py /build/obitools-1.2.12+dfsg/doc/sphinx/source/welcome.rst:66: WARNING: download file not readable: /build/obitools-1.2.12+dfsg/get_obitools/get-obitools.py /build/obitools-1.2.12+dfsg/doc/sphinx/source/welcome.rst:103: WARNING: download file not readable: /build/obitools-1.2.12+dfsg/get_obitools/get-obitools.py /build/obitools-1.2.12+dfsg/doc/sphinx/source/wolves.rst:17: WARNING: download file not readable: /build/obitools-1.2.12+dfsg/wolf_tutorial.zip looking for now-outdated files... none found pickling environment... done checking consistency... /build/obitools-1.2.12+dfsg/doc/sphinx/source/embl.rst: WARNING: document isn't included in any toctree /build/obitools-1.2.12+dfsg/doc/sphinx/source/genbank.rst: WARNING: document isn't included in any toctree done writing... obiconvert.1 { } obisubset.1 { } obitaxonomy.1 { } obicut.1 { } illuminapairedend.1 { } obicomplement.1 { } obiselect.1 { } ngsfilter.1 { } obisample.1 { } obiuniq.1 { } ecoPCR.1 { } ecofind.1 { } ecodbtaxstat.1 { } obijoinpairedend.1 { } oligotag.1 { } obiaddtaxids.1 { } obisilva.1 { } ecotaxspecificity.1 { } obigrep.1 { } ecotaxstat.1 { } ecoPrimers.1 { } obihead.1 { } obipr2.1 { } obisort.1 { } ecotag.1 { } obisplit.1 { } obitail.1 { } obiannotate.1 { } obiclean.1 { } obiextract.1 { } obitab.1 { } obidistribute.1 { } obicount.1 { } obistat.1 { } build succeeded, 9 warnings. The manual pages are in build/sphinx/man. running install_lib creating /build/obitools-1.2.12+dfsg/debian/obitools/usr creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7 creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/collections.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/sample.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/version.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/zipfile.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/gzip.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/_obitools.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/statistics copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/statistics/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/statistics copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/statistics/hypergeometric.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/statistics copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/statistics/noncentralhypergeo.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/statistics creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tree copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tree/newick.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tree copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tree/unrooted.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tree copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tree/layout.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tree copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tree/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tree copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tree/svg.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tree copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tree/dot.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tree creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/options copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/options/bioseqcutter.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/options copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/options/bioseqedittag.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/options copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/options/bioseqfilter.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/options copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/options/taxonomyfilter.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/options copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/options/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/options copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/options/_options.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/options copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/options/_bioseqfilter.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/options copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/options/bioseqcutter.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/options copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/options/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/options copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/options/taxonomyfilter.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/options copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/options/bioseqfilter.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/options copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/options/bioseqedittag.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/options creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/eutils copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/eutils/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/eutils creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/sequenceencoder copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/sequenceencoder/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/sequenceencoder copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/sequenceencoder/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/sequenceencoder creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/unit creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/unit/obitools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/unit/obitools/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/unit/obitools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/unit/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/unit creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/parallel copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/parallel/jobqueue.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/parallel copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/parallel/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/parallel creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tools/solexapairend.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tools/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tools/_solexapairend.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tools/solexapairend.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tools/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tools creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/phylogeny copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/phylogeny/newick.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/phylogeny copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/phylogeny/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/phylogeny creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/metabarcoding copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/metabarcoding/options.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/metabarcoding copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/metabarcoding/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/metabarcoding creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/obischemas creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/obischemas/kb copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/obischemas/kb/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/obischemas/kb copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/obischemas/kb/extern.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/obischemas/kb copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/obischemas/options.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/obischemas copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/obischemas/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/obischemas creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/solexa copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/solexa/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/solexa creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/location copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/location/feature.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/location copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/location/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/location copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/location/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/location copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/location/feature.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/location creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fnaqual copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fnaqual/quality.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fnaqual copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fnaqual/fasta.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fnaqual copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fnaqual/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fnaqual copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fnaqual/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fnaqual copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fnaqual/quality.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fnaqual copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fnaqual/fasta.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fnaqual creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/barcodecoverage copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/barcodecoverage/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/barcodecoverage copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/barcodecoverage/calcBc.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/barcodecoverage copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/barcodecoverage/drawBcTree.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/barcodecoverage copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/barcodecoverage/findErrors.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/barcodecoverage copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/barcodecoverage/readFiles.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/barcodecoverage copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/barcodecoverage/writeBcTree.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/barcodecoverage creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/dag.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/layout copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/layout/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/layout copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/layout/radialtree.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/layout creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/algorithms copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/algorithms/clique.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/algorithms copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/algorithms/component.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/algorithms copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/algorithms/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/algorithms copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/algorithms/clique.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/algorithms copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/algorithms/compact.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/algorithms copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/algorithms/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/algorithms copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/algorithms/component.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/algorithms copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/tree.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/dag.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/graph/rootedtree.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecotag copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecotag/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecotag copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecotag/parser.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecotag creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/goa copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/goa/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/goa copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/goa/parser.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/goa creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/utils copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/utils/bioseq.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/utils copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/utils/iterator.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/utils copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/utils/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/utils copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/utils/_utils.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/utils copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/utils/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/utils copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/utils/iterator.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/utils copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/utils/crc64.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/utils copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/utils/bioseq.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/utils creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fasta copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fasta/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fasta copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fasta/_fasta.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fasta copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fasta/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fasta creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/thermo copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/thermo/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/thermo creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/dnahash copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/dnahash/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/dnahash creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/carto copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/carto/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/carto creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/obo creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/obo/go copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/obo/go/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/obo/go copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/obo/go/parser.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/obo/go copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/obo/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/obo copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/obo/parser.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/obo creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_lcs.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_rassemble.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_nws.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_profilenws.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_nwsdnabyprot.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_freeendgapfm.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_gprofilenws.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_assemble.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_upperbond.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_qsassemble.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_dynamic.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_freeendgap.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_codonnws.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/_qsrassemble.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/ssearch.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/align/homopolymere.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecopcr copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecopcr/annotation.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecopcr copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecopcr/sequence.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecopcr copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecopcr/taxonomy.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecopcr copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecopcr/options.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecopcr copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecopcr/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecopcr copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecopcr/options.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecopcr copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecopcr/annotation.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecopcr copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecopcr/sequence.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecopcr copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecopcr/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecopcr copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecopcr/taxonomy.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecopcr creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/profile copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/profile/_profile.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/profile copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/profile/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/profile creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/table copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/table/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/table copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/table/csv.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/table creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/blastdb copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/blastdb/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/blastdb creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/embl copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/embl/parser.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/embl copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/embl/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/embl copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/embl/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/embl copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/embl/parser.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/embl creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/genbank copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/genbank/parser.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/genbank copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/genbank/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/genbank copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/genbank/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/genbank copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/genbank/ncbi.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/genbank copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/genbank/parser.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/genbank copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/dnaparser.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/seqdb/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tagmatcher copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tagmatcher/options.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tagmatcher copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tagmatcher/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tagmatcher copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/tagmatcher/parser.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tagmatcher creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/interactive copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/interactive/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/interactive creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/alignment copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/alignment/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/alignment copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/alignment/ace.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/alignment copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/alignment/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/alignment creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/word copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/word/predicate.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/word copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/word/options.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/word copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/word/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/word copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/word/_readindex.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/word copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/word/_binary.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/word copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/word/options.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/word copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/word/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/word copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/word/predicate.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/word creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/options.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/_format.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/ontology copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/ontology/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/ontology copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/ontology/go_obo.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/ontology creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence/fastq.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence/fasta.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence/fnaqual.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence/genbank.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence/embl.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence/embl.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence/fastq.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence/tagmatcher.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence/genbank.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence/fasta.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/sequence/fnaqual.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/genericparser copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/genericparser/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/genericparser copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/genericparser/_genericparser.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/genericparser copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/genericparser/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/genericparser copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/options.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/format/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/blast copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/blast/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/blast creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/distances copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/distances/r.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/distances copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/distances/observed.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/distances copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/distances/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/distances copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/distances/phylip.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/distances creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fastq copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fastq/__init__.pyc -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fastq copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fastq/_fastq.so -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fastq copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fastq/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fastq creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecobarcode copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecobarcode/options.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecobarcode copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecobarcode/databases.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecobarcode copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecobarcode/rawdata.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecobarcode copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecobarcode/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecobarcode copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecobarcode/ecotag.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecobarcode copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/ecobarcode/taxonomy.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecobarcode copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/zipfile.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/gzip.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/version.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/SVGdraw.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/decorator.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/__init__.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/fast.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/collections.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/svg.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/sample.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools copying /build/obitools-1.2.12+dfsg/.pybuild/cpython2_2.7_obitools/build/obitools/solexaPairEnd.py -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/statistics/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/statistics/hypergeometric.py to hypergeometric.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/statistics/noncentralhypergeo.py to noncentralhypergeo.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tree/newick.py to newick.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tree/unrooted.py to unrooted.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tree/layout.py to layout.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tree/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tree/svg.py to svg.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tree/dot.py to dot.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/options/bioseqcutter.py to bioseqcutter.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/options/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/options/taxonomyfilter.py to taxonomyfilter.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/options/bioseqfilter.py to bioseqfilter.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/options/bioseqedittag.py to bioseqedittag.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/eutils/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/sequenceencoder/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/unit/obitools/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/unit/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/parallel/jobqueue.py to jobqueue.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/parallel/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tools/solexapairend.py to solexapairend.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tools/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/phylogeny/newick.py to newick.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/phylogeny/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/metabarcoding/options.py to options.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/metabarcoding/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/obischemas/kb/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/obischemas/kb/extern.py to extern.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/obischemas/options.py to options.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/obischemas/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/solexa/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/location/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/location/feature.py to feature.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fnaqual/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fnaqual/quality.py to quality.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fnaqual/fasta.py to fasta.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/barcodecoverage/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/barcodecoverage/calcBc.py to calcBc.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/barcodecoverage/drawBcTree.py to drawBcTree.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/barcodecoverage/findErrors.py to findErrors.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/barcodecoverage/readFiles.py to readFiles.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/barcodecoverage/writeBcTree.py to writeBcTree.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/layout/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/layout/radialtree.py to radialtree.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/algorithms/clique.py to clique.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/algorithms/compact.py to compact.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/algorithms/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/algorithms/component.py to component.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/tree.py to tree.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/dag.py to dag.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/graph/rootedtree.py to rootedtree.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecotag/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecotag/parser.py to parser.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/goa/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/goa/parser.py to parser.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/utils/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/utils/iterator.py to iterator.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/utils/crc64.py to crc64.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/utils/bioseq.py to bioseq.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fasta/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/thermo/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/dnahash/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/carto/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/obo/go/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/obo/go/parser.py to parser.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/obo/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/obo/parser.py to parser.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/ssearch.py to ssearch.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/homopolymere.py to homopolymere.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecopcr/options.py to options.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecopcr/annotation.py to annotation.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecopcr/sequence.py to sequence.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecopcr/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecopcr/taxonomy.py to taxonomy.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/profile/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/table/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/table/csv.py to csv.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/blastdb/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/embl/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/embl/parser.py to parser.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/genbank/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/genbank/ncbi.py to ncbi.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/genbank/parser.py to parser.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/dnaparser.py to dnaparser.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/seqdb/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tagmatcher/options.py to options.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tagmatcher/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/tagmatcher/parser.py to parser.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/interactive/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/alignment/ace.py to ace.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/alignment/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/word/options.py to options.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/word/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/word/predicate.py to predicate.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/ontology/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/ontology/go_obo.py to go_obo.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence/embl.py to embl.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence/fastq.py to fastq.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence/tagmatcher.py to tagmatcher.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence/genbank.py to genbank.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence/fasta.py to fasta.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/sequence/fnaqual.py to fnaqual.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/genericparser/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/options.py to options.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/blast/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/distances/r.py to r.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/distances/observed.py to observed.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/distances/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/distances/phylip.py to phylip.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fastq/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecobarcode/options.py to options.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecobarcode/databases.py to databases.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecobarcode/rawdata.py to rawdata.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecobarcode/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecobarcode/ecotag.py to ecotag.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/ecobarcode/taxonomy.py to taxonomy.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/zipfile.py to zipfile.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/gzip.py to gzip.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/version.py to version.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/SVGdraw.py to SVGdraw.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/decorator.py to decorator.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/__init__.py to __init__.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/fast.py to fast.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/collections.py to collections.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/svg.py to svg.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/sample.py to sample.pyc byte-compiling /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/obitools/solexaPairEnd.py to solexaPairEnd.pyc running install_scripts creating /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obisubset -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/extractreads -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/extractreads2 -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/ali2consensus -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/ecodbtaxstat -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/ecotaxspecificity -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/ecotaxstat -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/illuminapairedend -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/ngsfilter -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obiaddtaxids -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obiannotate -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obiclean -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obicomplement -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obiconvert -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obicount -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obicut -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obidistribute -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obiextract -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obigrep -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obihead -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obijoinpairedend -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obipr2 -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obisample -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obiselect -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obisilva -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obisort -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obisplit -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obistat -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obitab -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obitail -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obitaxonomy -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/obiuniq -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/oligotag -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin copying build/scripts-2.7/ecotag -> /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obisubset to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/extractreads to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/extractreads2 to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/ali2consensus to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/ecodbtaxstat to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/ecotaxspecificity to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/ecotaxstat to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/illuminapairedend to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/ngsfilter to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiaddtaxids to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiannotate to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiclean to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obicomplement to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiconvert to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obicount to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obicut to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obidistribute to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiextract to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obigrep to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obihead to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obijoinpairedend to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obipr2 to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obisample to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiselect to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obisilva to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obisort to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obisplit to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obistat to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obitab to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obitail to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obitaxonomy to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/obiuniq to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/oligotag to 775 changing mode of /build/obitools-1.2.12+dfsg/debian/obitools/usr/bin/ecotag to 775 running install_egg_info Writing /build/obitools-1.2.12+dfsg/debian/obitools/usr/lib/python2.7/dist-packages/OBITools-1.2.12.egg-info make[1]: Leaving directory '/build/obitools-1.2.12+dfsg' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/obitools-1.2.12+dfsg' dh_installman find debian -name "ecoPCR.1*" -delete find debian -name "ecofind.1*" -delete make[1]: Leaving directory '/build/obitools-1.2.12+dfsg' dh_python2 -O--buildsystem=pybuild I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/ecotag I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/oligotag I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obiuniq I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obitaxonomy I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obitail I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obitab I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obistat I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obisplit I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obisort I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obisilva I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obiselect I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obisample I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obipr2 I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obijoinpairedend I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obihead I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obigrep I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obiextract I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obidistribute I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obicut I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obicount I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obiconvert I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obicomplement I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obiclean I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obiannotate I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obiaddtaxids I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/ngsfilter I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/illuminapairedend I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/ecotaxstat I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/ecotaxspecificity I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/ecodbtaxstat I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/ali2consensus I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/extractreads2 I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/extractreads I: dh_python2 tools:114: replacing shebang in debian/obitools/usr/bin/obisubset I: dh_python2 fs:343: renaming _obitools.so to _obitools.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _fastq.so to _fastq.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _format.so to _format.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _genericparser.so to _genericparser.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _binary.so to _binary.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _readindex.so to _readindex.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _profile.so to _profile.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _assemble.so to _assemble.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _codonnws.so to _codonnws.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _dynamic.so to _dynamic.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _freeendgap.so to _freeendgap.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _freeendgapfm.so to _freeendgapfm.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _gprofilenws.so to _gprofilenws.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _lcs.so to _lcs.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _nws.so to _nws.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _nwsdnabyprot.so to _nwsdnabyprot.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _profilenws.so to _profilenws.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _qsassemble.so to _qsassemble.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _qsrassemble.so to _qsrassemble.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _rassemble.so to _rassemble.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _upperbond.so to _upperbond.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _fasta.so to _fasta.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _utils.so to _utils.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _solexapairend.so to _solexapairend.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _bioseqfilter.so to _bioseqfilter.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming _options.so to _options.x86_64-linux-gnu.so dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_assemble.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/utils/_utils.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_dynamic.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_freeendgap.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_rassemble.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/tools/_solexapairend.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/options/_bioseqfilter.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/options/_options.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/_obitools.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/fastq/_fastq.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_codonnws.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_nws.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/_format.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/fasta/_fasta.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_qsassemble.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_nwsdnabyprot.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_profilenws.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_gprofilenws.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/word/_readindex.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_freeendgapfm.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_lcs.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_upperbond.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/format/genericparser/_genericparser.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/word/_binary.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/profile/_profile.x86_64-linux-gnu.so debian/obitools/usr/lib/python2.7/dist-packages/obitools/align/_qsrassemble.x86_64-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols) dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package obitools: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package obitools: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dpkg-gencontrol: warning: package obitools: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package obitools: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'obitools' in '../obitools_1.2.12+dfsg-2_amd64.deb'. dpkg-deb: building package 'obitools-dbgsym' in '../obitools-dbgsym_1.2.12+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../obitools_1.2.12+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/62467/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/62467/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/62467 and its subdirectories I: Current time: Fri Jan 14 23:16:24 +14 2022 I: pbuilder-time-stamp: 1642151784