I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 8 01:42:39 +14 2021 I: pbuilder-time-stamp: 1625658159 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lucy_1.20-1.dsc] I: copying [./lucy_1.20.orig.tar.gz] I: copying [./lucy_1.20-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Sep 6 22:59:45 2018 +14 gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./lucy_1.20-1.dsc dpkg-source: info: extracting lucy in lucy-1.20 dpkg-source: info: unpacking lucy_1.20.orig.tar.gz dpkg-source: info: unpacking lucy_1.20-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying helpingMakefile.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/26877/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/26877/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/26877/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=23a8f5ab04f44c2d944126f93f7f428c LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=26877 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.CoZM0f6TTN/pbuilderrc_Lc36 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.CoZM0f6TTN/b2 --logfile b2/build.log lucy_1.20-1.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 4.19.0-17-amd64 #1 SMP Debian 4.19.194-2 (2021-06-21) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash -rwxr-xr-x 1 root root 109408 Mar 1 2019 date -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd -rwxr-xr-x 1 root root 93744 Mar 1 2019 df -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 35424 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln -rwxr-xr-x 1 root root 56760 Jul 27 2018 login -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 10 2019 more -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Jul 8 01:43 sh -> bash lrwxrwxrwx 1 root root 4 Jul 7 22:24 sh.distrib -> dash -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty -rwsr-xr-x 1 root root 63568 Jan 10 2019 su -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch -rwxr-xr-x 1 root root 35424 Mar 1 2019 true -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/26877/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 19.0 MB of archives. After unpacking 69.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Fetched 19.0 MB in 2s (12.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3+deb10u1_amd64.deb ... Unpacking groff-base (1.22.4-3+deb10u1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../11-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../22-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../24-libglib2.0-0_2.58.3-2+deb10u3_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../25-libicu63_63.1-6+deb10u1_amd64.deb ... Unpacking libicu63:amd64 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+deb10u2_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../27-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../28-libncurses6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/lucy-1.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package lucy dpkg-buildpackage: info: source version 1.20-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_auto_clean make -j15 clean make[1]: Entering directory '/build/lucy-1.20' rm -f lucy.o qual_trim.o abi.o vector.o splice.o poly.o lucy make[1]: Leaving directory '/build/lucy-1.20' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/lucy.substvars debian/files rm -fr -- debian/lucy/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j15 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/lucy-1.20' cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lucy.o lucy.c cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qual_trim.o qual_trim.c cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o abi.o abi.c cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vector.o vector.c cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o splice.o splice.c qual_trim.c:10:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c - Quality trimming algorithm which determines a "clean" qual_trim.c:11:1: warning: "/*" within comment [-Wcomment] /* range for a sequence based on its phred quality values. qual_trim.c:12:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:13:1: warning: "/*" within comment [-Wcomment] /* Written by Michael Holmes, 4/13/99. qual_trim.c:14:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:15:1: warning: "/*" within comment [-Wcomment] /* 1/31/2000, Michael Holmes -- Added default_windows(). qual_trim.c:16:1: warning: "/*" within comment [-Wcomment] /* 2/15/2000, Michael Holmes -- Added bracket_clean_range() and qual_trim.c:17:1: warning: "/*" within comment [-Wcomment] /* set_bracket(). qual_trim.c:18:1: warning: "/*" within comment [-Wcomment] /* 2/18/2000, Michael Holmes -- Minor change to test-mode output only. qual_trim.c:19:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:20:1: warning: "/*" within comment [-Wcomment] /* Copyright (C) 1999, 2000, The Institute for Genomic Research. All rights qual_trim.c:21:1: warning: "/*" within comment [-Wcomment] /* reserved. qual_trim.c:22:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:23:1: warning: "/*" within comment [-Wcomment] /* Note: phred quality values are based on the log (base 10) of the qual_trim.c:24:1: warning: "/*" within comment [-Wcomment] /* probability that the corresponding base call is in error: qual_trim.c:25:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:26:1: warning: "/*" within comment [-Wcomment] /* Q = -10 log(P_error) qual_trim.c:27:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:28:1: warning: "/*" within comment [-Wcomment] /* Thanks to Granger Sutton for valuable suggestions. qual_trim.c:29:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:30:1: warning: "/*" within comment [-Wcomment] /* The main functions of interest to external code (such as lucy) are qual_trim.c:31:1: warning: "/*" within comment [-Wcomment] /* default_windows() and quality_trim(). The grim() function emulates the qual_trim.c:32:1: warning: "/*" within comment [-Wcomment] /* interface that was used by the old quality trimmimg algorithm (grim), qual_trim.c:33:1: warning: "/*" within comment [-Wcomment] /* but it is not called by lucy. The main() function is compiled only if qual_trim.c:34:1: warning: "/*" within comment [-Wcomment] /* TEST_THIS_CODE is #defined. qual_trim.c:35:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:36:1: warning: "/*" within comment [-Wcomment] /* The calling hierarchy is: qual_trim.c:37:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:38:1: warning: "/*" within comment [-Wcomment] /* main() qual_trim.c:39:1: warning: "/*" within comment [-Wcomment] /* grim() qual_trim.c:40:1: warning: "/*" within comment [-Wcomment] /* default_windows() qual_trim.c:41:1: warning: "/*" within comment [-Wcomment] /* quality_trim() qual_trim.c:42:1: warning: "/*" within comment [-Wcomment] /* bracket_clean_range() qual_trim.c:43:1: warning: "/*" within comment [-Wcomment] /* multi_window_trim() qual_trim.c:44:1: warning: "/*" within comment [-Wcomment] /* window_trim() qual_trim.c:45:1: warning: "/*" within comment [-Wcomment] /* multi_window_trim() [recursive call] qual_trim.c:46:1: warning: "/*" within comment [-Wcomment] /* average_error_trim() qual_trim.c:47:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:48:1: warning: "/*" within comment [-Wcomment] /**************************************************************************/ cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o poly.o poly.c abi.c:24:8: warning: type defaults to 'int' in declaration of 'condition' [-Wimplicit-int] static condition[]={ ^~~~~~~~~ abi.c: In function 'abi_code': abi.c:70:15: warning: implicit declaration of function 'random' [-Wimplicit-function-declaration] case 5: tmp=random()%2 ? 2 : 0; break; ^~~~~~ abi.c:82:5: warning: implicit declaration of function 'giveup' [-Wimplicit-function-declaration] giveup("how can other cases happen in tag_code?"); ^~~~~~ abi.c: In function 'abi_align': abi.c:195:16: warning: array subscript has type 'char' [-Wchar-subscripts] if (badness[a[i]][b[j]]) { ^ abi.c:195:22: warning: array subscript has type 'char' [-Wchar-subscripts] if (badness[a[i]][b[j]]) { ^ abi.c:221:16: warning: array subscript has type 'char' [-Wchar-subscripts] if (badness[a[i]][b[j]]) { ^ abi.c:221:22: warning: array subscript has type 'char' [-Wchar-subscripts] if (badness[a[i]][b[j]]) { ^ abi.c:226:37: warning: array subscript has type 'char' [-Wchar-subscripts] l=0 && r>=0 && badness[a[l]][b[r]]==0 ^ abi.c:294:36: warning: array subscript has type 'char' [-Wchar-subscripts] l>=0 && r>=0 && badness[a[l]][b[r]]==0 ^ abi.c:301:21: warning: array subscript has type 'char' [-Wchar-subscripts] if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 ^ abi.c:313:36: warning: array subscript has type 'char' [-Wchar-subscripts] l>=0 && r>=0 && badness[a[l]][b[r]]==0 ^ abi.c:320:21: warning: array subscript has type 'char' [-Wchar-subscripts] if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 ^ abi.c:334:36: warning: array subscript has type 'char' [-Wchar-subscripts] l>=0 && r>=0 && badness[a[l]][b[r]]==0 ^ abi.c:341:21: warning: array subscript has type 'char' [-Wchar-subscripts] if ((count+=badness[a[l]][b[r]])=span && j>=width-max_i || j>height/2) ~~~~~~~~^~~~~~~~~~~~~~~~~ lucy.c: In function 'hashstring': lucy.c:111:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (g = value&0xF0000000) { ^ lucy.c: In function 'worker': lucy.c:172:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] int id=(int)arg; ^ lucy.c: In function 'work_splice': lucy.c:206:5: warning: implicit declaration of function 'splice_align_left' [-Wimplicit-function-declaration] splice_align_left(id, target_seq[id], ^~~~~~~~~~~~~~~~~ lucy.c:247:7: warning: implicit declaration of function 'splice_align_right' [-Wimplicit-function-declaration] splice_align_right(id, target_seq[id]+seqs[i].left, ^~~~~~~~~~~~~~~~~~ lucy.c: At top level: lucy.c:284:1: warning: return type defaults to 'int' [-Wimplicit-int] main (argc, argv) ^~~~ lucy.c: In function 'main': lucy.c:361:9: warning: implicit declaration of function 'set_bracket' [-Wimplicit-function-declaration] set_bracket(bracket_size, bracket_err); ^~~~~~~~~~~ vector.c: In function 'construct_vector_tags': vector.c:85:30: warning: array subscript has type 'char' [-Wchar-subscripts] accr|=tag_code(rev_code[seq[len-k%len-1]]); ^ lucy.c:469:5: warning: implicit declaration of function 'default_windows' [-Wimplicit-function-declaration] default_windows(); ^~~~~~~~~~~~~~~ qual_trim.c:214:1: warning: "/*" within comment [-Wcomment] /* Determines some number of candidate clean ranges using a particular qual_trim.c:215:1: warning: "/*" within comment [-Wcomment] /* window size. qual_trim.c:216:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:217:1: warning: "/*" within comment [-Wcomment] /* Globals used: qual_trim.c:218:1: warning: "/*" within comment [-Wcomment] /* double end_limit, (maximum allowed probability of error for bases) qual_trim.c:219:1: warning: "/*" within comment [-Wcomment] /* ( at each end of clean range) qual_trim.c:220:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:332:1: warning: "/*" within comment [-Wcomment] /* Finds the largest subsequence of a sequence whose average probability qual_trim.c:333:1: warning: "/*" within comment [-Wcomment] /* of error does not exceed a specified maximum. qual_trim.c:334:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:335:1: warning: "/*" within comment [-Wcomment] /* Globals used: qual_trim.c:336:1: warning: "/*" within comment [-Wcomment] /* double max_avg_error, (maximum allowed average probability of error) qual_trim.c:337:1: warning: "/*" within comment [-Wcomment] /* double end_limit, (maximum allowed probability of error for bases) qual_trim.c:338:1: warning: "/*" within comment [-Wcomment] /* ( at each end of clean range) qual_trim.c:339:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:434:1: warning: "/*" within comment [-Wcomment] /* Determines a single clean range, after recursively considering all of qual_trim.c:435:1: warning: "/*" within comment [-Wcomment] /* the specified window sizes. Calls average_error_trim to trim the qual_trim.c:436:1: warning: "/*" within comment [-Wcomment] /* results of the final window based on overall average probability of qual_trim.c:437:1: warning: "/*" within comment [-Wcomment] /* error. qual_trim.c:438:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:439:1: warning: "/*" within comment [-Wcomment] /* Globals used: qual_trim.c:440:1: warning: "/*" within comment [-Wcomment] /* double max_avg_error, (maximum allowed average probability of error) qual_trim.c:441:1: warning: "/*" within comment [-Wcomment] /* double end_limit, (maximum allowed probability of error for bases) qual_trim.c:442:1: warning: "/*" within comment [-Wcomment] /* ( at each end of clean range) qual_trim.c:443:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:569:1: warning: "/*" within comment [-Wcomment] /* Sets the window size and average probability of error allowed for the qual_trim.c:570:1: warning: "/*" within comment [-Wcomment] /* terminal windows that "bracket" the candidate clean range. qual_trim.c:571:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:572:1: warning: "/*" within comment [-Wcomment] /* Globals used: qual_trim.c:573:1: warning: "/*" within comment [-Wcomment] /* int bracket_window, (size of terminal window) qual_trim.c:574:1: warning: "/*" within comment [-Wcomment] /* double bracket_error (allowable average prob. error in window) qual_trim.c:575:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:587:1: warning: "/*" within comment [-Wcomment] /* Finds the leftmost window, and the rightmost window, which meet the qual_trim.c:588:1: warning: "/*" within comment [-Wcomment] /* specified error criterion. The purpose of this function is to bracket qual_trim.c:589:1: warning: "/*" within comment [-Wcomment] /* the portion of the sequence that is of decent quality -- i.e. to qual_trim.c:590:1: warning: "/*" within comment [-Wcomment] /* eliminate the really bad quality stuff that is often found on either qual_trim.c:591:1: warning: "/*" within comment [-Wcomment] /* end. The beginning of the first matching window, and the end of the qual_trim.c:592:1: warning: "/*" within comment [-Wcomment] /* last, bracket the sequence range that will be looked at to find the qual_trim.c:593:1: warning: "/*" within comment [-Wcomment] /* final clean range. qual_trim.c:594:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:595:1: warning: "/*" within comment [-Wcomment] /* This function is called before the multi_window_trim function, and qual_trim.c:596:1: warning: "/*" within comment [-Wcomment] /* its results are used to limit the range of sequence that will be qual_trim.c:597:1: warning: "/*" within comment [-Wcomment] /* considered by that function. qual_trim.c:598:1: warning: "/*" within comment [-Wcomment] /* lucy.c:531:51: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] if (pthread_create(&threads[i], NULL, worker, (void*)i)) ^ lucy.c:639:7: warning: implicit declaration of function 'quality_trim' [-Wimplicit-function-declaration] quality_trim(conf_val_raw, j, minimum, &(ptr->left), &(ptr->right)); ^~~~~~~~~~~~ lucy.c:669:5: warning: implicit declaration of function 'prepare_abi_mask' [-Wimplicit-function-declaration] prepare_abi_mask(); ^~~~~~~~~~~~~~~~ lucy.c:713:2: warning: implicit declaration of function 'abi_align' [-Wimplicit-function-declaration] abi_align(phred_seq, ptr->len, abi_seq, bases, &left, &right); ^~~~~~~~~ qual_trim.c:678:1: warning: "/*" within comment [-Wcomment] /* Determines the clean range. Calls multi_window_trim, which calls both qual_trim.c:679:1: warning: "/*" within comment [-Wcomment] /* window_trim and average_error_trim. qual_trim.c:680:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:681:1: warning: "/*" within comment [-Wcomment] /* Globals used: qual_trim.c:682:1: warning: "/*" within comment [-Wcomment] /* int num_windows, (number of windows) qual_trim.c:683:1: warning: "/*" within comment [-Wcomment] /* int *windows, (array of window sizes (largest to smallest)) qual_trim.c:684:1: warning: "/*" within comment [-Wcomment] /* double *err_limits, (array of maximum allowed average probability) qual_trim.c:685:1: warning: "/*" within comment [-Wcomment] /* ( for each window size) qual_trim.c:686:1: warning: "/*" within comment [-Wcomment] /* double max_avg_error, (maximum allowed average probability of error) qual_trim.c:687:1: warning: "/*" within comment [-Wcomment] /* double end_limit, (maximum allowed probability of error for bases) qual_trim.c:688:1: warning: "/*" within comment [-Wcomment] /* ( at each end of clean range) qual_trim.c:689:1: warning: "/*" within comment [-Wcomment] /* int bracket_window, (size of terminal window) qual_trim.c:690:1: warning: "/*" within comment [-Wcomment] /* double bracket_error (allowable average prob. error in window) qual_trim.c:691:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c: In function 'quality_trim': qual_trim.c:705:14: warning: unused variable 'sum' [-Wunused-variable] double err, sum; ^~~ qual_trim.c:705:9: warning: unused variable 'err' [-Wunused-variable] double err, sum; ^~~ qual_trim.c: At top level: qual_trim.c:792:1: warning: "/*" within comment [-Wcomment] /* Sets up 3 windows for quality trimming, with the average error allowed qual_trim.c:793:1: warning: "/*" within comment [-Wcomment] /* in each window calculated from max_avg_error. qual_trim.c:794:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:795:1: warning: "/*" within comment [-Wcomment] /* Globals used: qual_trim.c:796:1: warning: "/*" within comment [-Wcomment] /* int num_windows, (number of windows) qual_trim.c:797:1: warning: "/*" within comment [-Wcomment] /* int *windows, (array of window sizes (largest to smallest)) qual_trim.c:798:1: warning: "/*" within comment [-Wcomment] /* double *err_limits, (array of maximum allowed average probability) qual_trim.c:799:1: warning: "/*" within comment [-Wcomment] /* (for each window size) qual_trim.c:800:1: warning: "/*" within comment [-Wcomment] /* double max_avg_error, (maximum allowed average probability of error) qual_trim.c:801:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:826:1: warning: "/*" within comment [-Wcomment] /* Simulates the functionality of the old grim() function, by calling qual_trim.c:827:1: warning: "/*" within comment [-Wcomment] /* quality_trim(). qual_trim.c:828:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:829:1: warning: "/*" within comment [-Wcomment] /* Globals used: qual_trim.c:830:1: warning: "/*" within comment [-Wcomment] /* int num_windows, (number of windows) qual_trim.c:831:1: warning: "/*" within comment [-Wcomment] /* int *windows, (array of window sizes (largest to smallest)) qual_trim.c:832:1: warning: "/*" within comment [-Wcomment] /* double *err_limits, (array of maximum allowed average probability) qual_trim.c:833:1: warning: "/*" within comment [-Wcomment] /* (for each window size) qual_trim.c:834:1: warning: "/*" within comment [-Wcomment] /* double max_avg_error, (maximum allowed average probability of error) qual_trim.c:835:1: warning: "/*" within comment [-Wcomment] /* double end_limit, (maximum allowed probability of error for bases) qual_trim.c:836:1: warning: "/*" within comment [-Wcomment] /* ( at each end of clean range) qual_trim.c:837:1: warning: "/*" within comment [-Wcomment] /* lucy.c:792:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] (i=(int)fgets(buf, BUFFER_LENGTH, spl_file)) && buf[0]!='>'; ) { ^ lucy.c:891:7: warning: implicit declaration of function 'poly_at_left' [-Wimplicit-function-declaration] left=poly_at_left(&phred_seq[seqs[i].left], ^~~~~~~~~~~~ lucy.c:894:8: warning: implicit declaration of function 'poly_at_right' [-Wimplicit-function-declaration] right=poly_at_right(&phred_seq[seqs[i].right], ^~~~~~~~~~~~~ abi.c: In function 'abi_code': lucy.c:934:5: warning: implicit declaration of function 'construct_vector_tags' [-Wimplicit-function-declaration] construct_vector_tags(vec_seq, bases); ^~~~~~~~~~~~~~~~~~~~~ lucy.c:947:4: warning: implicit declaration of function 'match_vector_tags' [-Wimplicit-function-declaration] j=match_vector_tags(phred_seq+seqs[i].left, bases); ^~~~~~~~~~~~~~~~~ lucy.c:959:5: warning: implicit declaration of function 'destroy_vector_tags' [-Wimplicit-function-declaration] destroy_vector_tags(); ^~~~~~~~~~~~~~~~~~~ abi.c:84:10: warning: 'tmp' may be used uninitialized in this function [-Wmaybe-uninitialized] return tmp; ^~~ vector.c: In function 'tag_code': vector.c:44:10: warning: 'tmp' may be used uninitialized in this function [-Wmaybe-uninitialized] return tmp; ^~~ lucy.c:631:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, BUFFER_LENGTH, qul_file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f lucy cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -o lucy lucy.o qual_trim.o abi.o vector.o splice.o poly.o -lpthread make[1]: Leaving directory '/build/lucy-1.20' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep rm -f -- debian/lucy.substvars rm -fr -- debian/.debhelper/generated/lucy/ debian/lucy/ debian/tmp/ dh_auto_install install -d /build/lucy-1.20/debian/lucy dh_install install -d debian/lucy/usr/bin cp --reflink=auto -a ./lucy debian/lucy/usr/bin/ install -d debian/.debhelper/generated/lucy dh_installdocs install -d debian/lucy/usr/share/doc/lucy cp --reflink=auto -a ./debian/README.Debian debian/lucy/usr/share/doc/lucy cp --reflink=auto -a ./debian/README.source debian/lucy/usr/share/doc/lucy cp --reflink=auto -a ./README.FIRST debian/lucy/usr/share/doc/lucy cp --reflink=auto -a ./HISTORY debian/lucy/usr/share/doc/lucy chown -R 0:0 debian/lucy/usr/share/doc chmod -R u\+rw,go=rX debian/lucy/usr/share/doc install -p -m0644 debian/README.Debian debian/lucy/usr/share/doc/lucy/README.Debian install -p -m0644 debian/copyright debian/lucy/usr/share/doc/lucy/copyright dh_installchangelogs install -p -m0644 debian/changelog debian/lucy/usr/share/doc/lucy/changelog.Debian mv debian/lucy/usr/share/doc/lucy/HISTORY debian/lucy/usr/share/doc/lucy/changelog chmod 0644 -- debian/lucy/usr/share/doc/lucy/changelog chown 0:0 -- debian/lucy/usr/share/doc/lucy/changelog dh_installman install -d debian/lucy/usr/share/man/man1/ install -p -m0644 ./lucy.1 debian/lucy/usr/share/man/man1/lucy.1 man -l --recode UTF-8 ./debian/lucy/usr/share/man/man1/lucy.1 > debian/lucy/usr/share/man/man1/lucy.1.dh-new mv debian/lucy/usr/share/man/man1/lucy.1.dh-new debian/lucy/usr/share/man/man1/lucy.1 chmod 0644 -- debian/lucy/usr/share/man/man1/lucy.1 dh_perl dh_link dh_strip_nondeterminism dh_compress cd debian/lucy chmod a-x usr/share/doc/lucy/README.FIRST usr/share/doc/lucy/changelog usr/share/doc/lucy/changelog.Debian usr/share/man/man1/lucy.1 gzip -9nf usr/share/doc/lucy/README.FIRST usr/share/doc/lucy/changelog usr/share/doc/lucy/changelog.Debian usr/share/man/man1/lucy.1 cd '/build/lucy-1.20' dh_fixperms find debian/lucy -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/lucy ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/lucy/usr/share/doc -type f -a -true -a ! -regex 'debian/lucy/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lucy/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/lucy/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lucy -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lucy/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_strip install -d debian/.debhelper/lucy/dbgsym-root/usr/lib/debug/.build-id/ab objcopy --only-keep-debug --compress-debug-sections debian/lucy/usr/bin/lucy debian/.debhelper/lucy/dbgsym-root/usr/lib/debug/.build-id/ab/e05f6182f9810bb94dda0f3e48fa136ac14d29.debug chmod 0644 -- debian/.debhelper/lucy/dbgsym-root/usr/lib/debug/.build-id/ab/e05f6182f9810bb94dda0f3e48fa136ac14d29.debug chown 0:0 -- debian/.debhelper/lucy/dbgsym-root/usr/lib/debug/.build-id/ab/e05f6182f9810bb94dda0f3e48fa136ac14d29.debug strip --remove-section=.comment --remove-section=.note debian/lucy/usr/bin/lucy objcopy --add-gnu-debuglink debian/.debhelper/lucy/dbgsym-root/usr/lib/debug/.build-id/ab/e05f6182f9810bb94dda0f3e48fa136ac14d29.debug debian/lucy/usr/bin/lucy install -d debian/.debhelper/lucy/dbgsym-root/usr/share/doc ln -s lucy debian/.debhelper/lucy/dbgsym-root/usr/share/doc/lucy-dbgsym dh_makeshlibs rm -f debian/lucy/DEBIAN/shlibs dh_shlibdeps install -d debian/lucy/DEBIAN dpkg-shlibdeps -Tdebian/lucy.substvars debian/lucy/usr/bin/lucy dh_installdeb dh_gencontrol echo misc:Depends= >> debian/lucy.substvars echo misc:Pre-Depends= >> debian/lucy.substvars install -d debian/.debhelper/lucy/dbgsym-root/DEBIAN dpkg-gencontrol -plucy -ldebian/changelog -Tdebian/lucy.substvars -Pdebian/.debhelper/lucy/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=lucy-dbgsym "-DDepends=lucy (= \${binary:Version})" "-DDescription=debug symbols for lucy" -DBuild-Ids=abe05f6182f9810bb94dda0f3e48fa136ac14d29 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/lucy/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/lucy/dbgsym-root/DEBIAN/control dpkg-gencontrol -plucy -ldebian/changelog -Tdebian/lucy.substvars -Pdebian/lucy -UMulti-Arch chmod 0644 -- debian/lucy/DEBIAN/control chown 0:0 -- debian/lucy/DEBIAN/control dh_md5sums cd debian/lucy >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/lucy/DEBIAN/md5sums chown 0:0 -- debian/lucy/DEBIAN/md5sums cd debian/.debhelper/lucy/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/lucy/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/lucy/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --build debian/.debhelper/lucy/dbgsym-root .. dpkg-deb --build debian/lucy .. dpkg-deb: building package 'lucy-dbgsym' in '../lucy-dbgsym_1.20-1_amd64.deb'. dpkg-deb: building package 'lucy' in '../lucy_1.20-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../lucy_1.20-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/26877/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/26877/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/26877 and its subdirectories I: Current time: Thu Jul 8 01:44:49 +14 2021 I: pbuilder-time-stamp: 1625658289