I: pbuilder: network access will be disabled during build I: Current time: Mon Mar 14 18:40:51 +14 2022 I: pbuilder-time-stamp: 1647232851 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libmuscle_3.7+4565-6.dsc] I: copying [./libmuscle_3.7+4565.orig.tar.xz] I: copying [./libmuscle_3.7+4565-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Aug 12 08:56:26 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libmuscle_3.7+4565-6.dsc dpkg-source: info: extracting libmuscle in libmuscle-3.7+4565 dpkg-source: info: unpacking libmuscle_3.7+4565.orig.tar.xz dpkg-source: info: unpacking libmuscle_3.7+4565-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying parsnp_changes.patch dpkg-source: info: applying drop_version_from_library_name.patch dpkg-source: info: applying makefile_deps.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/39472/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/39472/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/39472/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=1c5b82888d3d4af5b1d8e4ae5adb7e67 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=39472 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.UMha2Yj5nb/pbuilderrc_PPSg --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.UMha2Yj5nb/b2 --logfile b2/build.log libmuscle_3.7+4565-6.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 5.9.0-0.bpo.5-amd64 #1 SMP Debian 5.9.15-1~bpo10+1 (2020-12-31) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash -rwxr-xr-x 1 root root 109408 Mar 1 2019 date -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd -rwxr-xr-x 1 root root 93744 Mar 1 2019 df -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 35424 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln -rwxr-xr-x 1 root root 56760 Jul 27 2018 login -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 10 2019 more -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Mar 14 18:41 sh -> bash lrwxrwxrwx 1 root root 4 Mar 13 04:47 sh.distrib -> dash -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty -rwsr-xr-x 1 root root 63568 Jan 10 2019 su -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch -rwxr-xr-x 1 root root 35424 Mar 1 2019 true -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/39472/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), d-shlibs, pkg-config dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} pkg-config{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 19.1 MB of archives. After unpacking 69.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 d-shlibs all 0.84 [17.2 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u2 [1258 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u1 [689 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Fetched 19.1 MB in 0s (70.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../11-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../17-d-shlibs_0.84_all.deb ... Unpacking d-shlibs (0.84) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../23-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../25-libglib2.0-0_2.58.3-2+deb10u2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../26-libicu63_63.1-6+deb10u1_amd64.deb ... Unpacking libicu63:amd64 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../27-libxml2_2.9.4+dfsg1-7+deb10u1_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+deb10u1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../28-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../29-libncurses6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../30-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../31-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../32-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../33-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package pkg-config. Preparing to unpack .../34-pkg-config_0.29-6_amd64.deb ... Unpacking pkg-config (0.29-6) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up pkg-config (0.29-6) ... Setting up d-shlibs (0.84) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libmuscle-3.7+4565/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libmuscle dpkg-buildpackage: info: source version 3.7+4565-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:52: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:52: https://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:64: installing 'config/compile' configure.ac:64: installing 'config/config.guess' configure.ac:64: installing 'config/config.sub' configure.ac:52: installing 'config/install-sh' configure.ac:52: installing 'config/missing' Makefile.am: installing './INSTALL' libMUSCLE/Makefile.am:28: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') libMUSCLE/Makefile.am: installing 'config/depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking whether ln -s works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for ANSI C header files... (cached) yes checking for doxygen... no configure: WARNING: doxygen not found - will not generate any doxygen documentation checking for perl... /usr/bin/perl checking for an ANSI C-conforming const... yes checking for inline... inline checking whether time.h and sys/time.h may both be included... yes checking whether gcc needs -traditional... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libMUSCLE/Makefile config.status: creating libMUSCLE.pc config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build make -j16 make[1]: Entering directory '/build/libmuscle-3.7+4565' Making all in libMUSCLE make[2]: Entering directory '/build/libmuscle-3.7+4565/libMUSCLE' g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o main.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-aligngivenpath.lo `test -f 'aligngivenpath.cpp' || echo './'`aligngivenpath.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-aligngivenpathsw.lo `test -f 'aligngivenpathsw.cpp' || echo './'`aligngivenpathsw.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-aligntwomsas.lo `test -f 'aligntwomsas.cpp' || echo './'`aligntwomsas.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-aligntwoprofs.lo `test -f 'aligntwoprofs.cpp' || echo './'`aligntwoprofs.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-aln.lo `test -f 'aln.cpp' || echo './'`aln.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-alpha.lo `test -f 'alpha.cpp' || echo './'`alpha.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-anchoredpp.lo `test -f 'anchoredpp.cpp' || echo './'`anchoredpp.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-anchors.lo `test -f 'anchors.cpp' || echo './'`anchors.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-bittraceback.lo `test -f 'bittraceback.cpp' || echo './'`bittraceback.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-blosumla.lo `test -f 'blosumla.cpp' || echo './'`blosumla.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-clust.lo `test -f 'clust.cpp' || echo './'`clust.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-cluster.lo `test -f 'cluster.cpp' || echo './'`cluster.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-clwwt.lo `test -f 'clwwt.cpp' || echo './'`clwwt.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-color.lo `test -f 'color.cpp' || echo './'`color.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-cons.lo `test -f 'cons.cpp' || echo './'`cons.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-diaglist.lo `test -f 'diaglist.cpp' || echo './'`diaglist.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aligntwoprofs.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-aligntwoprofs.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aligntwomsas.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-aligntwomsas.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c alpha.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-alpha.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c bittraceback.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-bittraceback.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c anchoredpp.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-anchoredpp.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aligngivenpath.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-aligngivenpath.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aln.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-aln.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c clwwt.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-clwwt.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c cons.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-cons.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aligngivenpathsw.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-aligngivenpathsw.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c anchors.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-anchors.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c color.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-color.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c cluster.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-cluster.o bittraceback.cpp: In function 'const char* muscle::BitsToStr(char)': bittraceback.cpp:20:39: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] static TLSstr Str("xM xD xI"); ^ libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c clust.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-clust.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c blosumla.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-blosumla.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aligntwomsas.cpp -o libMUSCLE_la-aligntwomsas.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aligntwoprofs.cpp -o libMUSCLE_la-aligntwoprofs.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c bittraceback.cpp -o libMUSCLE_la-bittraceback.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c blosumla.cpp -o libMUSCLE_la-blosumla.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c diaglist.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-diaglist.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aln.cpp -o libMUSCLE_la-aln.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c clwwt.cpp -o libMUSCLE_la-clwwt.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c cons.cpp -o libMUSCLE_la-cons.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-diffobjscore.lo `test -f 'diffobjscore.cpp' || echo './'`diffobjscore.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c color.cpp -o libMUSCLE_la-color.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-diffpaths.lo `test -f 'diffpaths.cpp' || echo './'`diffpaths.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-difftrees.lo `test -f 'difftrees.cpp' || echo './'`difftrees.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-difftreese.lo `test -f 'difftreese.cpp' || echo './'`difftreese.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aligngivenpathsw.cpp -o libMUSCLE_la-aligngivenpathsw.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-distcalc.lo `test -f 'distcalc.cpp' || echo './'`distcalc.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c anchors.cpp -o libMUSCLE_la-anchors.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-distfunc.lo `test -f 'distfunc.cpp' || echo './'`distfunc.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-distpwkimura.lo `test -f 'distpwkimura.cpp' || echo './'`distpwkimura.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c diaglist.cpp -o libMUSCLE_la-diaglist.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c cluster.cpp -o libMUSCLE_la-cluster.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aligngivenpath.cpp -o libMUSCLE_la-aligngivenpath.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-domuscle.lo `test -f 'domuscle.cpp' || echo './'`domuscle.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c clust.cpp -o libMUSCLE_la-clust.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-dosp.lo `test -f 'dosp.cpp' || echo './'`dosp.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-dpreglist.lo `test -f 'dpreglist.cpp' || echo './'`dpreglist.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c difftrees.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-difftrees.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c diffobjscore.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-diffobjscore.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c difftreese.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-difftreese.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-drawtree.lo `test -f 'drawtree.cpp' || echo './'`drawtree.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c diffpaths.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-diffpaths.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-edgelist.lo `test -f 'edgelist.cpp' || echo './'`edgelist.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c distcalc.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-distcalc.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c distfunc.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-distfunc.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c anchoredpp.cpp -o libMUSCLE_la-anchoredpp.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c distpwkimura.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-distpwkimura.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c difftreese.cpp -o libMUSCLE_la-difftreese.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c diffpaths.cpp -o libMUSCLE_la-diffpaths.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c alpha.cpp -o libMUSCLE_la-alpha.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-enumopts.lo `test -f 'enumopts.cpp' || echo './'`enumopts.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c domuscle.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-domuscle.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c diffobjscore.cpp -o libMUSCLE_la-diffobjscore.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c difftrees.cpp -o libMUSCLE_la-difftrees.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c distfunc.cpp -o libMUSCLE_la-distfunc.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c distcalc.cpp -o libMUSCLE_la-distcalc.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-enumtostr.lo `test -f 'enumtostr.cpp' || echo './'`enumtostr.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c dosp.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-dosp.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-estring.lo `test -f 'estring.cpp' || echo './'`estring.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-fasta2.lo `test -f 'fasta2.cpp' || echo './'`fasta2.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c distpwkimura.cpp -o libMUSCLE_la-distpwkimura.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-fasta.lo `test -f 'fasta.cpp' || echo './'`fasta.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c dpreglist.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-dpreglist.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-fastclust.lo `test -f 'fastclust.cpp' || echo './'`fastclust.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-fastdist.lo `test -f 'fastdist.cpp' || echo './'`fastdist.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c drawtree.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-drawtree.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c dpreglist.cpp -o libMUSCLE_la-dpreglist.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-fastdistjones.lo `test -f 'fastdistjones.cpp' || echo './'`fastdistjones.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c dosp.cpp -o libMUSCLE_la-dosp.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-fastdistkbit.lo `test -f 'fastdistkbit.cpp' || echo './'`fastdistkbit.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c edgelist.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-edgelist.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c drawtree.cpp -o libMUSCLE_la-drawtree.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c enumopts.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-enumopts.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-fastdistkmer.lo `test -f 'fastdistkmer.cpp' || echo './'`fastdistkmer.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c enumtostr.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-enumtostr.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c estring.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-estring.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c domuscle.cpp -o libMUSCLE_la-domuscle.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fasta2.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-fasta2.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c edgelist.cpp -o libMUSCLE_la-edgelist.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-fastdistmafft.lo `test -f 'fastdistmafft.cpp' || echo './'`fastdistmafft.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fasta.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-fasta.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c enumopts.cpp -o libMUSCLE_la-enumopts.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-fastdistnuc.lo `test -f 'fastdistnuc.cpp' || echo './'`fastdistnuc.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastclust.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-fastclust.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-fastscorepath2.lo `test -f 'fastscorepath2.cpp' || echo './'`fastscorepath2.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fasta2.cpp -o libMUSCLE_la-fasta2.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-finddiags.lo `test -f 'finddiags.cpp' || echo './'`finddiags.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-finddiagsn.lo `test -f 'finddiagsn.cpp' || echo './'`finddiagsn.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fasta.cpp -o libMUSCLE_la-fasta.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdist.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-fastdist.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c enumtostr.cpp -o libMUSCLE_la-enumtostr.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdistjones.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-fastdistjones.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-glbalign352.lo `test -f 'glbalign352.cpp' || echo './'`glbalign352.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdistkbit.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-fastdistkbit.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-glbalign.lo `test -f 'glbalign.cpp' || echo './'`glbalign.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdistkmer.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-fastdistkmer.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-glbaligndiag.lo `test -f 'glbaligndiag.cpp' || echo './'`glbaligndiag.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdist.cpp -o libMUSCLE_la-fastdist.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdistnuc.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-fastdistnuc.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c finddiags.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-finddiags.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastclust.cpp -o libMUSCLE_la-fastclust.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-glbalignle.lo `test -f 'glbalignle.cpp' || echo './'`glbalignle.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdistmafft.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-fastdistmafft.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastscorepath2.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-fastscorepath2.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c finddiagsn.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-finddiagsn.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-glbalignsimple.lo `test -f 'glbalignsimple.cpp' || echo './'`glbalignsimple.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdistkbit.cpp -o libMUSCLE_la-fastdistkbit.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalign352.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-glbalign352.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-glbalignsp.lo `test -f 'glbalignsp.cpp' || echo './'`glbalignsp.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c finddiags.cpp -o libMUSCLE_la-finddiags.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdistjones.cpp -o libMUSCLE_la-fastdistjones.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalign.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-glbalign.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastscorepath2.cpp -o libMUSCLE_la-fastscorepath2.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c estring.cpp -o libMUSCLE_la-estring.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c finddiagsn.cpp -o libMUSCLE_la-finddiagsn.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbaligndiag.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-glbaligndiag.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-glbalignspn.lo `test -f 'glbalignspn.cpp' || echo './'`glbalignspn.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdistkmer.cpp -o libMUSCLE_la-fastdistkmer.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalign352.cpp -o libMUSCLE_la-glbalign352.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalign.cpp -o libMUSCLE_la-glbalign.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignle.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-glbalignle.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-glbalignss.lo `test -f 'glbalignss.cpp' || echo './'`glbalignss.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-glbalndimer.lo `test -f 'glbalndimer.cpp' || echo './'`glbalndimer.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdistmafft.cpp -o libMUSCLE_la-fastdistmafft.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignsimple.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-glbalignsimple.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdistnuc.cpp -o libMUSCLE_la-fastdistnuc.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-globals.lo `test -f 'globals.cpp' || echo './'`globals.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-globalslinux.lo `test -f 'globalslinux.cpp' || echo './'`globalslinux.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-globalswin32.lo `test -f 'globalswin32.cpp' || echo './'`globalswin32.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbaligndiag.cpp -o libMUSCLE_la-glbaligndiag.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-gonnet.lo `test -f 'gonnet.cpp' || echo './'`gonnet.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignsp.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-glbalignsp.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-gotowt.lo `test -f 'gotowt.cpp' || echo './'`gotowt.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignspn.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-glbalignspn.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignsimple.cpp -o libMUSCLE_la-glbalignsimple.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-henikoffweight.lo `test -f 'henikoffweight.cpp' || echo './'`henikoffweight.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalndimer.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-glbalndimer.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-henikoffweightpb.lo `test -f 'henikoffweightpb.cpp' || echo './'`henikoffweightpb.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignss.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-glbalignss.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c globalslinux.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-globalslinux.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c globalswin32.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-globalswin32.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c globals.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-globals.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c gonnet.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-gonnet.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-html.lo `test -f 'html.cpp' || echo './'`html.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-hydro.lo `test -f 'hydro.cpp' || echo './'`hydro.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c globalswin32.cpp -o libMUSCLE_la-globalswin32.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-intmath.lo `test -f 'intmath.cpp' || echo './'`intmath.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-local.lo `test -f 'local.cpp' || echo './'`local.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c globalslinux.cpp -o libMUSCLE_la-globalslinux.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-makerootmsab.lo `test -f 'makerootmsab.cpp' || echo './'`makerootmsab.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c gonnet.cpp -o libMUSCLE_la-gonnet.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c gotowt.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-gotowt.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c gotowt.cpp -o libMUSCLE_la-gotowt.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-makerootmsa.lo `test -f 'makerootmsa.cpp' || echo './'`makerootmsa.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignle.cpp -o libMUSCLE_la-glbalignle.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c henikoffweight.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-henikoffweight.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-mhack.lo `test -f 'mhack.cpp' || echo './'`mhack.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalndimer.cpp -o libMUSCLE_la-glbalndimer.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-mpam200.lo `test -f 'mpam200.cpp' || echo './'`mpam200.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c globals.cpp -o libMUSCLE_la-globals.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c henikoffweightpb.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-henikoffweightpb.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignsp.cpp -o libMUSCLE_la-glbalignsp.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c henikoffweight.cpp -o libMUSCLE_la-henikoffweight.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c hydro.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-hydro.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignspn.cpp -o libMUSCLE_la-glbalignspn.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c intmath.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-intmath.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignss.cpp -o libMUSCLE_la-glbalignss.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c html.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-html.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c makerootmsab.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-makerootmsab.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c local.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-local.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c henikoffweightpb.cpp -o libMUSCLE_la-henikoffweightpb.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-msa2.lo `test -f 'msa2.cpp' || echo './'`msa2.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c makerootmsa.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-makerootmsa.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c hydro.cpp -o libMUSCLE_la-hydro.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-msa.lo `test -f 'msa.cpp' || echo './'`msa.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c html.cpp -o libMUSCLE_la-html.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-msadistkimura.lo `test -f 'msadistkimura.cpp' || echo './'`msadistkimura.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c mhack.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-mhack.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c mpam200.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-mpam200.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-msf.lo `test -f 'msf.cpp' || echo './'`msf.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-muscle.lo `test -f 'muscle.cpp' || echo './'`muscle.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c makerootmsab.cpp -o libMUSCLE_la-makerootmsab.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c local.cpp -o libMUSCLE_la-local.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-muscleout.lo `test -f 'muscleout.cpp' || echo './'`muscleout.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c mpam200.cpp -o libMUSCLE_la-mpam200.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-nucmx.lo `test -f 'nucmx.cpp' || echo './'`nucmx.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c intmath.cpp -o libMUSCLE_la-intmath.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-nwdasimple2.lo `test -f 'nwdasimple2.cpp' || echo './'`nwdasimple2.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c makerootmsa.cpp -o libMUSCLE_la-makerootmsa.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c msa2.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-msa2.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-nwdasimple.lo `test -f 'nwdasimple.cpp' || echo './'`nwdasimple.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-nwdasmall.lo `test -f 'nwdasmall.cpp' || echo './'`nwdasmall.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c mhack.cpp -o libMUSCLE_la-mhack.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-nwrec.lo `test -f 'nwrec.cpp' || echo './'`nwrec.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c msadistkimura.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-msadistkimura.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c msa.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-msa.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-nwsmall.lo `test -f 'nwsmall.cpp' || echo './'`nwsmall.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c msf.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-msf.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c muscle.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-muscle.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-objscore2.lo `test -f 'objscore2.cpp' || echo './'`objscore2.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c msadistkimura.cpp -o libMUSCLE_la-msadistkimura.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c muscleout.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-muscleout.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c nucmx.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-nucmx.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-objscore.lo `test -f 'objscore.cpp' || echo './'`objscore.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c msf.cpp -o libMUSCLE_la-msf.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c nucmx.cpp -o libMUSCLE_la-nucmx.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c muscleout.cpp -o libMUSCLE_la-muscleout.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-objscoreda.lo `test -f 'objscoreda.cpp' || echo './'`objscoreda.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c nwdasimple.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-nwdasimple.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c nwdasimple2.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-nwdasimple2.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c nwdasmall.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-nwdasmall.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-onexception.lo `test -f 'onexception.cpp' || echo './'`onexception.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c nwrec.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-nwrec.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-options.lo `test -f 'options.cpp' || echo './'`options.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c nwrec.cpp -o libMUSCLE_la-nwrec.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-outweights.lo `test -f 'outweights.cpp' || echo './'`outweights.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-pam200mafft.lo `test -f 'pam200mafft.cpp' || echo './'`pam200mafft.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-params.lo `test -f 'params.cpp' || echo './'`params.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-phy2.lo `test -f 'phy2.cpp' || echo './'`phy2.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c nwdasimple2.cpp -o libMUSCLE_la-nwdasimple2.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c nwdasmall.cpp -o libMUSCLE_la-nwdasmall.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c nwdasimple.cpp -o libMUSCLE_la-nwdasimple.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c nwsmall.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-nwsmall.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c objscore2.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-objscore2.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c muscle.cpp -o libMUSCLE_la-muscle.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-phy3.lo `test -f 'phy3.cpp' || echo './'`phy3.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-phy4.lo `test -f 'phy4.cpp' || echo './'`phy4.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-phy.lo `test -f 'phy.cpp' || echo './'`phy.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c objscoreda.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-objscoreda.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c objscore.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-objscore.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c onexception.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-onexception.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c msa2.cpp -o libMUSCLE_la-msa2.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c options.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-options.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c outweights.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-outweights.o options.cpp:19:2: warning: #warning "Command-line option value storage is not OpenMP safe yet" [-Wcpp] #warning "Command-line option value storage is not OpenMP safe yet" ^~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c params.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-params.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c objscoreda.cpp -o libMUSCLE_la-objscoreda.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c onexception.cpp -o libMUSCLE_la-onexception.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c pam200mafft.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-pam200mafft.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phy2.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-phy2.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c outweights.cpp -o libMUSCLE_la-outweights.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c objscore.cpp -o libMUSCLE_la-objscore.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-phyfromclust.lo `test -f 'phyfromclust.cpp' || echo './'`phyfromclust.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c options.cpp -o libMUSCLE_la-options.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c pam200mafft.cpp -o libMUSCLE_la-pam200mafft.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c msa.cpp -o libMUSCLE_la-msa.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-phyfromfile.lo `test -f 'phyfromfile.cpp' || echo './'`phyfromfile.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c nwsmall.cpp -o libMUSCLE_la-nwsmall.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-physeq.lo `test -f 'physeq.cpp' || echo './'`physeq.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phy.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-phy.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-phytofile.lo `test -f 'phytofile.cpp' || echo './'`phytofile.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-posgap.lo `test -f 'posgap.cpp' || echo './'`posgap.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c objscore2.cpp -o libMUSCLE_la-objscore2.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phy4.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-phy4.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phy3.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-phy3.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-ppscore.lo `test -f 'ppscore.cpp' || echo './'`ppscore.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phy2.cpp -o libMUSCLE_la-phy2.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-profdb.lo `test -f 'profdb.cpp' || echo './'`profdb.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phyfromclust.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-phyfromclust.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-profile.lo `test -f 'profile.cpp' || echo './'`profile.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phy4.cpp -o libMUSCLE_la-phy4.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phyfromfile.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-phyfromfile.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phytofile.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-phytofile.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c physeq.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-physeq.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phyfromclust.cpp -o libMUSCLE_la-phyfromclust.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phy3.cpp -o libMUSCLE_la-phy3.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-profilefrommsa.lo `test -f 'profilefrommsa.cpp' || echo './'`profilefrommsa.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c posgap.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-posgap.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-progalign.lo `test -f 'progalign.cpp' || echo './'`progalign.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c profdb.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-profdb.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phyfromfile.cpp -o libMUSCLE_la-phyfromfile.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phytofile.cpp -o libMUSCLE_la-phytofile.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c posgap.cpp -o libMUSCLE_la-posgap.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-progress.lo `test -f 'progress.cpp' || echo './'`progress.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c ppscore.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-ppscore.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-progressivealign.lo `test -f 'progressivealign.cpp' || echo './'`progressivealign.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c physeq.cpp -o libMUSCLE_la-physeq.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phy.cpp -o libMUSCLE_la-phy.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-pwpath.lo `test -f 'pwpath.cpp' || echo './'`pwpath.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-readmx.lo `test -f 'readmx.cpp' || echo './'`readmx.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-realigndiffs.lo `test -f 'realigndiffs.cpp' || echo './'`realigndiffs.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-realigndiffse.lo `test -f 'realigndiffse.cpp' || echo './'`realigndiffse.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-refine.lo `test -f 'refine.cpp' || echo './'`refine.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c profile.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-profile.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-refinehoriz.lo `test -f 'refinehoriz.cpp' || echo './'`refinehoriz.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c ppscore.cpp -o libMUSCLE_la-ppscore.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c profilefrommsa.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-profilefrommsa.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c profdb.cpp -o libMUSCLE_la-profdb.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-refinesubfams.lo `test -f 'refinesubfams.cpp' || echo './'`refinesubfams.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c progressivealign.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-progressivealign.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c progress.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-progress.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c progalign.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-progalign.o progress.cpp:11:2: warning: #warning "progress indicators have not been made parallel-safe yet" [-Wcpp] #warning "progress indicators have not been made parallel-safe yet" ^~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c pwpath.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-pwpath.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c realigndiffs.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-realigndiffs.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c realigndiffse.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-realigndiffse.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c readmx.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-readmx.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c progress.cpp -o libMUSCLE_la-progress.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refine.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-refine.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c profile.cpp -o libMUSCLE_la-profile.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinehoriz.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-refinehoriz.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c profilefrommsa.cpp -o libMUSCLE_la-profilefrommsa.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-refinetree.lo `test -f 'refinetree.cpp' || echo './'`refinetree.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-refinetreee.lo `test -f 'refinetreee.cpp' || echo './'`refinetreee.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c progressivealign.cpp -o libMUSCLE_la-progressivealign.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-refinevert.lo `test -f 'refinevert.cpp' || echo './'`refinevert.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c realigndiffs.cpp -o libMUSCLE_la-realigndiffs.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c readmx.cpp -o libMUSCLE_la-readmx.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-refinew.lo `test -f 'refinew.cpp' || echo './'`refinew.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c progalign.cpp -o libMUSCLE_la-progalign.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinesubfams.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-refinesubfams.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c pwpath.cpp -o libMUSCLE_la-pwpath.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c realigndiffse.cpp -o libMUSCLE_la-realigndiffse.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-savebest.lo `test -f 'savebest.cpp' || echo './'`savebest.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinehoriz.cpp -o libMUSCLE_la-refinehoriz.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-scoregaps.lo `test -f 'scoregaps.cpp' || echo './'`scoregaps.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-scorehistory.lo `test -f 'scorehistory.cpp' || echo './'`scorehistory.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refine.cpp -o libMUSCLE_la-refine.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-scorepp.lo `test -f 'scorepp.cpp' || echo './'`scorepp.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinetree.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-refinetree.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinetreee.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-refinetreee.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinevert.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-refinevert.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinew.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-refinew.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-seq.lo `test -f 'seq.cpp' || echo './'`seq.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-seqvect.lo `test -f 'seqvect.cpp' || echo './'`seqvect.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c params.cpp -o libMUSCLE_la-params.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c scoregaps.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-scoregaps.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-setblosumweights.lo `test -f 'setblosumweights.cpp' || echo './'`setblosumweights.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c savebest.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-savebest.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinesubfams.cpp -o libMUSCLE_la-refinesubfams.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-setgscweights.lo `test -f 'setgscweights.cpp' || echo './'`setgscweights.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinetreee.cpp -o libMUSCLE_la-refinetreee.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinetree.cpp -o libMUSCLE_la-refinetree.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c scorepp.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-scorepp.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c scorehistory.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-scorehistory.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-setnewhandler.lo `test -f 'setnewhandler.cpp' || echo './'`setnewhandler.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c savebest.cpp -o libMUSCLE_la-savebest.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c seq.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-seq.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-spfast.lo `test -f 'spfast.cpp' || echo './'`spfast.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c scoregaps.cpp -o libMUSCLE_la-scoregaps.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinevert.cpp -o libMUSCLE_la-refinevert.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c seqvect.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-seqvect.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-sptest.lo `test -f 'sptest.cpp' || echo './'`sptest.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c scorehistory.cpp -o libMUSCLE_la-scorehistory.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-stabilize.lo `test -f 'stabilize.cpp' || echo './'`stabilize.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c scorepp.cpp -o libMUSCLE_la-scorepp.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-subfam.lo `test -f 'subfam.cpp' || echo './'`subfam.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c setblosumweights.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-setblosumweights.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-subfams.lo `test -f 'subfams.cpp' || echo './'`subfams.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c setgscweights.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-setgscweights.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-sw.lo `test -f 'sw.cpp' || echo './'`sw.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-termgaps.lo `test -f 'termgaps.cpp' || echo './'`termgaps.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c setnewhandler.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-setnewhandler.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c setblosumweights.cpp -o libMUSCLE_la-setblosumweights.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-textfile.lo `test -f 'textfile.cpp' || echo './'`textfile.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c setgscweights.cpp -o libMUSCLE_la-setgscweights.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c spfast.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-spfast.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c sptest.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-sptest.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c setnewhandler.cpp -o libMUSCLE_la-setnewhandler.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c stabilize.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-stabilize.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-threewaywt.lo `test -f 'threewaywt.cpp' || echo './'`threewaywt.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-traceback.lo `test -f 'traceback.cpp' || echo './'`traceback.cpp spfast.cpp: In function 'char* muscle::GapTypeToStr(int)': spfast.cpp:20:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] case LL: return "LL"; ^~~~ spfast.cpp:21:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] case LG: return "LG"; ^~~~ spfast.cpp:22:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] case GL: return "GL"; ^~~~ spfast.cpp:23:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] case GG: return "GG"; ^~~~ spfast.cpp:26:9: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] return "?"; ^~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-tracebackopt.lo `test -f 'tracebackopt.cpp' || echo './'`tracebackopt.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c subfam.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-subfam.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c subfams.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-subfams.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c sw.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-sw.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-tracebacksw.lo `test -f 'tracebacksw.cpp' || echo './'`tracebacksw.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c stabilize.cpp -o libMUSCLE_la-stabilize.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c termgaps.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-termgaps.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c subfams.cpp -o libMUSCLE_la-subfams.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c spfast.cpp -o libMUSCLE_la-spfast.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinew.cpp -o libMUSCLE_la-refinew.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c seq.cpp -o libMUSCLE_la-seq.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c sptest.cpp -o libMUSCLE_la-sptest.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-treefrommsa.lo `test -f 'treefrommsa.cpp' || echo './'`treefrommsa.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c textfile.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-textfile.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-typetostr.lo `test -f 'typetostr.cpp' || echo './'`typetostr.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c termgaps.cpp -o libMUSCLE_la-termgaps.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c sw.cpp -o libMUSCLE_la-sw.o >/dev/null 2>&1 subfam.cpp: In function 'void muscle::AlignSubFam(muscle::SeqVect&, const muscle::Tree&, unsigned int, muscle::MSA&)': subfam.cpp:175:8: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system(CmdLine); ~~~~~~^~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c threewaywt.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-threewaywt.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c seqvect.cpp -o libMUSCLE_la-seqvect.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c traceback.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-traceback.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c tracebacksw.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-tracebacksw.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c textfile.cpp -o libMUSCLE_la-textfile.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c tracebackopt.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-tracebackopt.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-upgma2.lo `test -f 'upgma2.cpp' || echo './'`upgma2.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-usage.lo `test -f 'usage.cpp' || echo './'`usage.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-validateids.lo `test -f 'validateids.cpp' || echo './'`validateids.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c treefrommsa.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-treefrommsa.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c tracebackopt.cpp -o libMUSCLE_la-tracebackopt.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-vtml2.lo `test -f 'vtml2.cpp' || echo './'`vtml2.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c traceback.cpp -o libMUSCLE_la-traceback.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c typetostr.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-typetostr.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c threewaywt.cpp -o libMUSCLE_la-threewaywt.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-writescorefile.lo `test -f 'writescorefile.cpp' || echo './'`writescorefile.cpp typetostr.cpp: In function 'const char* muscle::SecsToStr(long unsigned int)': typetostr.cpp:15:21: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] sprintf(Str.get(), "%02d:%02d:%02d", hh, mm, ss); ^~~~~~~~~~~~~~~~ ~~ typetostr.cpp:15:21: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] typetostr.cpp:15:21: warning: format '%d' expects argument of type 'int', but argument 5 has type 'long int' [-Wformat=] libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c tracebacksw.cpp -o libMUSCLE_la-tracebacksw.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-blosum62.lo `test -f 'blosum62.cpp' || echo './'`blosum62.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-globalsother.lo `test -f 'globalsother.cpp' || echo './'`globalsother.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c typetostr.cpp -o libMUSCLE_la-typetostr.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c subfam.cpp -o libMUSCLE_la-subfam.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c upgma2.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-upgma2.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c treefrommsa.cpp -o libMUSCLE_la-treefrommsa.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-maketree.lo `test -f 'maketree.cpp' || echo './'`maketree.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c usage.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-usage.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c validateids.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-validateids.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-scoredist.lo `test -f 'scoredist.cpp' || echo './'`scoredist.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-tomhydro.lo `test -f 'tomhydro.cpp' || echo './'`tomhydro.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c vtml2.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-vtml2.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c usage.cpp -o libMUSCLE_la-usage.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c writescorefile.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-writescorefile.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c vtml2.cpp -o libMUSCLE_la-vtml2.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c blosum62.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-blosum62.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c globalsother.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-globalsother.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c validateids.cpp -o libMUSCLE_la-validateids.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c blosum62.cpp -o libMUSCLE_la-blosum62.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c writescorefile.cpp -o libMUSCLE_la-writescorefile.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c maketree.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-maketree.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c globalsother.cpp -o libMUSCLE_la-globalsother.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c tomhydro.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-tomhydro.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c scoredist.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-scoredist.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c upgma2.cpp -o libMUSCLE_la-upgma2.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c maketree.cpp -o libMUSCLE_la-maketree.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c tomhydro.cpp -o libMUSCLE_la-tomhydro.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c scoredist.cpp -o libMUSCLE_la-scoredist.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=link g++ -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:0:0 -Wl,-z,relro -Wl,-z,now -o libMUSCLE.la -rpath /usr/lib/x86_64-linux-gnu libMUSCLE_la-aligngivenpath.lo libMUSCLE_la-aligngivenpathsw.lo libMUSCLE_la-aligntwomsas.lo libMUSCLE_la-aligntwoprofs.lo libMUSCLE_la-aln.lo libMUSCLE_la-alpha.lo libMUSCLE_la-anchoredpp.lo libMUSCLE_la-anchors.lo libMUSCLE_la-bittraceback.lo libMUSCLE_la-blosumla.lo libMUSCLE_la-clust.lo libMUSCLE_la-cluster.lo libMUSCLE_la-clwwt.lo libMUSCLE_la-color.lo libMUSCLE_la-cons.lo libMUSCLE_la-diaglist.lo libMUSCLE_la-diffobjscore.lo libMUSCLE_la-diffpaths.lo libMUSCLE_la-difftrees.lo libMUSCLE_la-difftreese.lo libMUSCLE_la-distcalc.lo libMUSCLE_la-distfunc.lo libMUSCLE_la-distpwkimura.lo libMUSCLE_la-domuscle.lo libMUSCLE_la-dosp.lo libMUSCLE_la-dpreglist.lo libMUSCLE_la-drawtree.lo libMUSCLE_la-edgelist.lo libMUSCLE_la-enumopts.lo libMUSCLE_la-enumtostr.lo libMUSCLE_la-estring.lo libMUSCLE_la-fasta2.lo libMUSCLE_la-fasta.lo libMUSCLE_la-fastclust.lo libMUSCLE_la-fastdist.lo libMUSCLE_la-fastdistjones.lo libMUSCLE_la-fastdistkbit.lo libMUSCLE_la-fastdistkmer.lo libMUSCLE_la-fastdistmafft.lo libMUSCLE_la-fastdistnuc.lo libMUSCLE_la-fastscorepath2.lo libMUSCLE_la-finddiags.lo libMUSCLE_la-finddiagsn.lo libMUSCLE_la-glbalign352.lo libMUSCLE_la-glbalign.lo libMUSCLE_la-glbaligndiag.lo libMUSCLE_la-glbalignle.lo libMUSCLE_la-glbalignsimple.lo libMUSCLE_la-glbalignsp.lo libMUSCLE_la-glbalignspn.lo libMUSCLE_la-glbalignss.lo libMUSCLE_la-glbalndimer.lo libMUSCLE_la-globals.lo libMUSCLE_la-globalslinux.lo libMUSCLE_la-globalswin32.lo libMUSCLE_la-gonnet.lo libMUSCLE_la-gotowt.lo libMUSCLE_la-henikoffweight.lo libMUSCLE_la-henikoffweightpb.lo libMUSCLE_la-html.lo libMUSCLE_la-hydro.lo libMUSCLE_la-intmath.lo libMUSCLE_la-local.lo libMUSCLE_la-makerootmsab.lo libMUSCLE_la-makerootmsa.lo libMUSCLE_la-mhack.lo libMUSCLE_la-mpam200.lo libMUSCLE_la-msa2.lo libMUSCLE_la-msa.lo libMUSCLE_la-msadistkimura.lo libMUSCLE_la-msf.lo libMUSCLE_la-muscle.lo libMUSCLE_la-muscleout.lo libMUSCLE_la-nucmx.lo libMUSCLE_la-nwdasimple2.lo libMUSCLE_la-nwdasimple.lo libMUSCLE_la-nwdasmall.lo libMUSCLE_la-nwrec.lo libMUSCLE_la-nwsmall.lo libMUSCLE_la-objscore2.lo libMUSCLE_la-objscore.lo libMUSCLE_la-objscoreda.lo libMUSCLE_la-onexception.lo libMUSCLE_la-options.lo libMUSCLE_la-outweights.lo libMUSCLE_la-pam200mafft.lo libMUSCLE_la-params.lo libMUSCLE_la-phy2.lo libMUSCLE_la-phy3.lo libMUSCLE_la-phy4.lo libMUSCLE_la-phy.lo libMUSCLE_la-phyfromclust.lo libMUSCLE_la-phyfromfile.lo libMUSCLE_la-physeq.lo libMUSCLE_la-phytofile.lo libMUSCLE_la-posgap.lo libMUSCLE_la-ppscore.lo libMUSCLE_la-profdb.lo libMUSCLE_la-profile.lo libMUSCLE_la-profilefrommsa.lo libMUSCLE_la-progalign.lo libMUSCLE_la-progress.lo libMUSCLE_la-progressivealign.lo libMUSCLE_la-pwpath.lo libMUSCLE_la-readmx.lo libMUSCLE_la-realigndiffs.lo libMUSCLE_la-realigndiffse.lo libMUSCLE_la-refine.lo libMUSCLE_la-refinehoriz.lo libMUSCLE_la-refinesubfams.lo libMUSCLE_la-refinetree.lo libMUSCLE_la-refinetreee.lo libMUSCLE_la-refinevert.lo libMUSCLE_la-refinew.lo libMUSCLE_la-savebest.lo libMUSCLE_la-scoregaps.lo libMUSCLE_la-scorehistory.lo libMUSCLE_la-scorepp.lo libMUSCLE_la-seq.lo libMUSCLE_la-seqvect.lo libMUSCLE_la-setblosumweights.lo libMUSCLE_la-setgscweights.lo libMUSCLE_la-setnewhandler.lo libMUSCLE_la-spfast.lo libMUSCLE_la-sptest.lo libMUSCLE_la-stabilize.lo libMUSCLE_la-subfam.lo libMUSCLE_la-subfams.lo libMUSCLE_la-sw.lo libMUSCLE_la-termgaps.lo libMUSCLE_la-textfile.lo libMUSCLE_la-threewaywt.lo libMUSCLE_la-traceback.lo libMUSCLE_la-tracebackopt.lo libMUSCLE_la-tracebacksw.lo libMUSCLE_la-treefrommsa.lo libMUSCLE_la-typetostr.lo libMUSCLE_la-upgma2.lo libMUSCLE_la-usage.lo libMUSCLE_la-validateids.lo libMUSCLE_la-vtml2.lo libMUSCLE_la-writescorefile.lo libMUSCLE_la-blosum62.lo libMUSCLE_la-globalsother.lo libMUSCLE_la-maketree.lo libMUSCLE_la-scoredist.lo libMUSCLE_la-tomhydro.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/libMUSCLE_la-aligngivenpath.o .libs/libMUSCLE_la-aligngivenpathsw.o .libs/libMUSCLE_la-aligntwomsas.o .libs/libMUSCLE_la-aligntwoprofs.o .libs/libMUSCLE_la-aln.o .libs/libMUSCLE_la-alpha.o .libs/libMUSCLE_la-anchoredpp.o .libs/libMUSCLE_la-anchors.o .libs/libMUSCLE_la-bittraceback.o .libs/libMUSCLE_la-blosumla.o .libs/libMUSCLE_la-clust.o .libs/libMUSCLE_la-cluster.o .libs/libMUSCLE_la-clwwt.o .libs/libMUSCLE_la-color.o .libs/libMUSCLE_la-cons.o .libs/libMUSCLE_la-diaglist.o .libs/libMUSCLE_la-diffobjscore.o .libs/libMUSCLE_la-diffpaths.o .libs/libMUSCLE_la-difftrees.o .libs/libMUSCLE_la-difftreese.o .libs/libMUSCLE_la-distcalc.o .libs/libMUSCLE_la-distfunc.o .libs/libMUSCLE_la-distpwkimura.o .libs/libMUSCLE_la-domuscle.o .libs/libMUSCLE_la-dosp.o .libs/libMUSCLE_la-dpreglist.o .libs/libMUSCLE_la-drawtree.o .libs/libMUSCLE_la-edgelist.o .libs/libMUSCLE_la-enumopts.o .libs/libMUSCLE_la-enumtostr.o .libs/libMUSCLE_la-estring.o .libs/libMUSCLE_la-fasta2.o .libs/libMUSCLE_la-fasta.o .libs/libMUSCLE_la-fastclust.o .libs/libMUSCLE_la-fastdist.o .libs/libMUSCLE_la-fastdistjones.o .libs/libMUSCLE_la-fastdistkbit.o .libs/libMUSCLE_la-fastdistkmer.o .libs/libMUSCLE_la-fastdistmafft.o .libs/libMUSCLE_la-fastdistnuc.o .libs/libMUSCLE_la-fastscorepath2.o .libs/libMUSCLE_la-finddiags.o .libs/libMUSCLE_la-finddiagsn.o .libs/libMUSCLE_la-glbalign352.o .libs/libMUSCLE_la-glbalign.o .libs/libMUSCLE_la-glbaligndiag.o .libs/libMUSCLE_la-glbalignle.o .libs/libMUSCLE_la-glbalignsimple.o .libs/libMUSCLE_la-glbalignsp.o .libs/libMUSCLE_la-glbalignspn.o .libs/libMUSCLE_la-glbalignss.o .libs/libMUSCLE_la-glbalndimer.o .libs/libMUSCLE_la-globals.o .libs/libMUSCLE_la-globalslinux.o .libs/libMUSCLE_la-globalswin32.o .libs/libMUSCLE_la-gonnet.o .libs/libMUSCLE_la-gotowt.o .libs/libMUSCLE_la-henikoffweight.o .libs/libMUSCLE_la-henikoffweightpb.o .libs/libMUSCLE_la-html.o .libs/libMUSCLE_la-hydro.o .libs/libMUSCLE_la-intmath.o .libs/libMUSCLE_la-local.o .libs/libMUSCLE_la-makerootmsab.o .libs/libMUSCLE_la-makerootmsa.o .libs/libMUSCLE_la-mhack.o .libs/libMUSCLE_la-mpam200.o .libs/libMUSCLE_la-msa2.o .libs/libMUSCLE_la-msa.o .libs/libMUSCLE_la-msadistkimura.o .libs/libMUSCLE_la-msf.o .libs/libMUSCLE_la-muscle.o .libs/libMUSCLE_la-muscleout.o .libs/libMUSCLE_la-nucmx.o .libs/libMUSCLE_la-nwdasimple2.o .libs/libMUSCLE_la-nwdasimple.o .libs/libMUSCLE_la-nwdasmall.o .libs/libMUSCLE_la-nwrec.o .libs/libMUSCLE_la-nwsmall.o .libs/libMUSCLE_la-objscore2.o .libs/libMUSCLE_la-objscore.o .libs/libMUSCLE_la-objscoreda.o .libs/libMUSCLE_la-onexception.o .libs/libMUSCLE_la-options.o .libs/libMUSCLE_la-outweights.o .libs/libMUSCLE_la-pam200mafft.o .libs/libMUSCLE_la-params.o .libs/libMUSCLE_la-phy2.o .libs/libMUSCLE_la-phy3.o .libs/libMUSCLE_la-phy4.o .libs/libMUSCLE_la-phy.o .libs/libMUSCLE_la-phyfromclust.o .libs/libMUSCLE_la-phyfromfile.o .libs/libMUSCLE_la-physeq.o .libs/libMUSCLE_la-phytofile.o .libs/libMUSCLE_la-posgap.o .libs/libMUSCLE_la-ppscore.o .libs/libMUSCLE_la-profdb.o .libs/libMUSCLE_la-profile.o .libs/libMUSCLE_la-profilefrommsa.o .libs/libMUSCLE_la-progalign.o .libs/libMUSCLE_la-progress.o .libs/libMUSCLE_la-progressivealign.o .libs/libMUSCLE_la-pwpath.o .libs/libMUSCLE_la-readmx.o .libs/libMUSCLE_la-realigndiffs.o .libs/libMUSCLE_la-realigndiffse.o .libs/libMUSCLE_la-refine.o .libs/libMUSCLE_la-refinehoriz.o .libs/libMUSCLE_la-refinesubfams.o .libs/libMUSCLE_la-refinetree.o .libs/libMUSCLE_la-refinetreee.o .libs/libMUSCLE_la-refinevert.o .libs/libMUSCLE_la-refinew.o .libs/libMUSCLE_la-savebest.o .libs/libMUSCLE_la-scoregaps.o .libs/libMUSCLE_la-scorehistory.o .libs/libMUSCLE_la-scorepp.o .libs/libMUSCLE_la-seq.o .libs/libMUSCLE_la-seqvect.o .libs/libMUSCLE_la-setblosumweights.o .libs/libMUSCLE_la-setgscweights.o .libs/libMUSCLE_la-setnewhandler.o .libs/libMUSCLE_la-spfast.o .libs/libMUSCLE_la-sptest.o .libs/libMUSCLE_la-stabilize.o .libs/libMUSCLE_la-subfam.o .libs/libMUSCLE_la-subfams.o .libs/libMUSCLE_la-sw.o .libs/libMUSCLE_la-termgaps.o .libs/libMUSCLE_la-textfile.o .libs/libMUSCLE_la-threewaywt.o .libs/libMUSCLE_la-traceback.o .libs/libMUSCLE_la-tracebackopt.o .libs/libMUSCLE_la-tracebacksw.o .libs/libMUSCLE_la-treefrommsa.o .libs/libMUSCLE_la-typetostr.o .libs/libMUSCLE_la-upgma2.o .libs/libMUSCLE_la-usage.o .libs/libMUSCLE_la-validateids.o .libs/libMUSCLE_la-vtml2.o .libs/libMUSCLE_la-writescorefile.o .libs/libMUSCLE_la-blosum62.o .libs/libMUSCLE_la-globalsother.o .libs/libMUSCLE_la-maketree.o .libs/libMUSCLE_la-scoredist.o .libs/libMUSCLE_la-tomhydro.o -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -O2 -fopenmp -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -fopenmp -Wl,-soname -Wl,libMUSCLE.so.1 -o .libs/libMUSCLE.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libMUSCLE.so.1" && ln -s "libMUSCLE.so.1.0.0" "libMUSCLE.so.1") libtool: link: (cd ".libs" && rm -f "libMUSCLE.so" && ln -s "libMUSCLE.so.1.0.0" "libMUSCLE.so") libtool: link: ar cru .libs/libMUSCLE.a libMUSCLE_la-aligngivenpath.o libMUSCLE_la-aligngivenpathsw.o libMUSCLE_la-aligntwomsas.o libMUSCLE_la-aligntwoprofs.o libMUSCLE_la-aln.o libMUSCLE_la-alpha.o libMUSCLE_la-anchoredpp.o libMUSCLE_la-anchors.o libMUSCLE_la-bittraceback.o libMUSCLE_la-blosumla.o libMUSCLE_la-clust.o libMUSCLE_la-cluster.o libMUSCLE_la-clwwt.o libMUSCLE_la-color.o libMUSCLE_la-cons.o libMUSCLE_la-diaglist.o libMUSCLE_la-diffobjscore.o libMUSCLE_la-diffpaths.o libMUSCLE_la-difftrees.o libMUSCLE_la-difftreese.o libMUSCLE_la-distcalc.o libMUSCLE_la-distfunc.o libMUSCLE_la-distpwkimura.o libMUSCLE_la-domuscle.o libMUSCLE_la-dosp.o libMUSCLE_la-dpreglist.o libMUSCLE_la-drawtree.o libMUSCLE_la-edgelist.o libMUSCLE_la-enumopts.o libMUSCLE_la-enumtostr.o libMUSCLE_la-estring.o libMUSCLE_la-fasta2.o libMUSCLE_la-fasta.o libMUSCLE_la-fastclust.o libMUSCLE_la-fastdist.o libMUSCLE_la-fastdistjones.o libMUSCLE_la-fastdistkbit.o libMUSCLE_la-fastdistkmer.o libMUSCLE_la-fastdistmafft.o libMUSCLE_la-fastdistnuc.o libMUSCLE_la-fastscorepath2.o libMUSCLE_la-finddiags.o libMUSCLE_la-finddiagsn.o libMUSCLE_la-glbalign352.o libMUSCLE_la-glbalign.o libMUSCLE_la-glbaligndiag.o libMUSCLE_la-glbalignle.o libMUSCLE_la-glbalignsimple.o libMUSCLE_la-glbalignsp.o libMUSCLE_la-glbalignspn.o libMUSCLE_la-glbalignss.o libMUSCLE_la-glbalndimer.o libMUSCLE_la-globals.o libMUSCLE_la-globalslinux.o libMUSCLE_la-globalswin32.o libMUSCLE_la-gonnet.o libMUSCLE_la-gotowt.o libMUSCLE_la-henikoffweight.o libMUSCLE_la-henikoffweightpb.o libMUSCLE_la-html.o libMUSCLE_la-hydro.o libMUSCLE_la-intmath.o libMUSCLE_la-local.o libMUSCLE_la-makerootmsab.o libMUSCLE_la-makerootmsa.o libMUSCLE_la-mhack.o libMUSCLE_la-mpam200.o libMUSCLE_la-msa2.o libMUSCLE_la-msa.o libMUSCLE_la-msadistkimura.o libMUSCLE_la-msf.o libMUSCLE_la-muscle.o libMUSCLE_la-muscleout.o libMUSCLE_la-nucmx.o libMUSCLE_la-nwdasimple2.o libMUSCLE_la-nwdasimple.o libMUSCLE_la-nwdasmall.o libMUSCLE_la-nwrec.o libMUSCLE_la-nwsmall.o libMUSCLE_la-objscore2.o libMUSCLE_la-objscore.o libMUSCLE_la-objscoreda.o libMUSCLE_la-onexception.o libMUSCLE_la-options.o libMUSCLE_la-outweights.o libMUSCLE_la-pam200mafft.o libMUSCLE_la-params.o libMUSCLE_la-phy2.o libMUSCLE_la-phy3.o libMUSCLE_la-phy4.o libMUSCLE_la-phy.o libMUSCLE_la-phyfromclust.o libMUSCLE_la-phyfromfile.o libMUSCLE_la-physeq.o libMUSCLE_la-phytofile.o libMUSCLE_la-posgap.o libMUSCLE_la-ppscore.o libMUSCLE_la-profdb.o libMUSCLE_la-profile.o libMUSCLE_la-profilefrommsa.o libMUSCLE_la-progalign.o libMUSCLE_la-progress.o libMUSCLE_la-progressivealign.o libMUSCLE_la-pwpath.o libMUSCLE_la-readmx.o libMUSCLE_la-realigndiffs.o libMUSCLE_la-realigndiffse.o libMUSCLE_la-refine.o libMUSCLE_la-refinehoriz.o libMUSCLE_la-refinesubfams.o libMUSCLE_la-refinetree.o libMUSCLE_la-refinetreee.o libMUSCLE_la-refinevert.o libMUSCLE_la-refinew.o libMUSCLE_la-savebest.o libMUSCLE_la-scoregaps.o libMUSCLE_la-scorehistory.o libMUSCLE_la-scorepp.o libMUSCLE_la-seq.o libMUSCLE_la-seqvect.o libMUSCLE_la-setblosumweights.o libMUSCLE_la-setgscweights.o libMUSCLE_la-setnewhandler.o libMUSCLE_la-spfast.o libMUSCLE_la-sptest.o libMUSCLE_la-stabilize.o libMUSCLE_la-subfam.o libMUSCLE_la-subfams.o libMUSCLE_la-sw.o libMUSCLE_la-termgaps.o libMUSCLE_la-textfile.o libMUSCLE_la-threewaywt.o libMUSCLE_la-traceback.o libMUSCLE_la-tracebackopt.o libMUSCLE_la-tracebacksw.o libMUSCLE_la-treefrommsa.o libMUSCLE_la-typetostr.o libMUSCLE_la-upgma2.o libMUSCLE_la-usage.o libMUSCLE_la-validateids.o libMUSCLE_la-vtml2.o libMUSCLE_la-writescorefile.o libMUSCLE_la-blosum62.o libMUSCLE_la-globalsother.o libMUSCLE_la-maketree.o libMUSCLE_la-scoredist.o libMUSCLE_la-tomhydro.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libMUSCLE.a libtool: link: ( cd ".libs" && rm -f "libMUSCLE.la" && ln -s "../libMUSCLE.la" "libMUSCLE.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -Wl,-z,relro -Wl,-z,now -o muscle main.o libMUSCLE.la libtool: link: g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/muscle main.o ./.libs/libMUSCLE.so -fopenmp make[2]: Leaving directory '/build/libmuscle-3.7+4565/libMUSCLE' make[2]: Entering directory '/build/libmuscle-3.7+4565' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/build/libmuscle-3.7+4565' make[1]: Leaving directory '/build/libmuscle-3.7+4565' dh_auto_test make -j16 check VERBOSE=1 make[1]: Entering directory '/build/libmuscle-3.7+4565' Making check in libMUSCLE make[2]: Entering directory '/build/libmuscle-3.7+4565/libMUSCLE' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/libmuscle-3.7+4565/libMUSCLE' make[2]: Entering directory '/build/libmuscle-3.7+4565' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/build/libmuscle-3.7+4565' make[1]: Leaving directory '/build/libmuscle-3.7+4565' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/build/libmuscle-3.7\+4565/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/libmuscle-3.7+4565' Making install in libMUSCLE make[2]: Entering directory '/build/libmuscle-3.7+4565/libMUSCLE' make[3]: Entering directory '/build/libmuscle-3.7+4565/libMUSCLE' /bin/mkdir -p '/build/libmuscle-3.7+4565/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libMUSCLE.la '/build/libmuscle-3.7+4565/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libMUSCLE.so.1.0.0 /build/libmuscle-3.7+4565/debian/tmp/usr/lib/x86_64-linux-gnu/libMUSCLE.so.1.0.0 libtool: install: (cd /build/libmuscle-3.7+4565/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libMUSCLE.so.1.0.0 libMUSCLE.so.1 || { rm -f libMUSCLE.so.1 && ln -s libMUSCLE.so.1.0.0 libMUSCLE.so.1; }; }) libtool: install: (cd /build/libmuscle-3.7+4565/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libMUSCLE.so.1.0.0 libMUSCLE.so || { rm -f libMUSCLE.so && ln -s libMUSCLE.so.1.0.0 libMUSCLE.so; }; }) libtool: install: /usr/bin/install -c .libs/libMUSCLE.lai /build/libmuscle-3.7+4565/debian/tmp/usr/lib/x86_64-linux-gnu/libMUSCLE.la libtool: install: /usr/bin/install -c .libs/libMUSCLE.a /build/libmuscle-3.7+4565/debian/tmp/usr/lib/x86_64-linux-gnu/libMUSCLE.a libtool: install: chmod 644 /build/libmuscle-3.7+4565/debian/tmp/usr/lib/x86_64-linux-gnu/libMUSCLE.a libtool: install: ranlib /build/libmuscle-3.7+4565/debian/tmp/usr/lib/x86_64-linux-gnu/libMUSCLE.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/libmuscle-3.7+4565/debian/tmp/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/install -c muscle '/build/libmuscle-3.7+4565/debian/tmp/usr/bin' libtool: warning: 'libMUSCLE.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/muscle /build/libmuscle-3.7+4565/debian/tmp/usr/bin/muscle /bin/mkdir -p '/build/libmuscle-3.7+4565/debian/tmp/usr/include/libMUSCLE' /usr/bin/install -c -m 644 alpha.h cluster.h clust.h clustsetdf.h clustset.h clustsetmsa.h diaglist.h distcalc.h distfunc.h dpregionlist.h dpreglist.h edgelist.h enumopts.h enums.h estring.h gapscoredimer.h gonnet.h intmath.h msadist.h msa.h muscle.h objscore.h params.h profile.h pwpath.h refine.h scorehistory.h seq.h seqvect.h textfile.h timing.h tree.h types.h unixio.h threadstorage.h '/build/libmuscle-3.7+4565/debian/tmp/usr/include/libMUSCLE' make[3]: Leaving directory '/build/libmuscle-3.7+4565/libMUSCLE' make[2]: Leaving directory '/build/libmuscle-3.7+4565/libMUSCLE' make[2]: Entering directory '/build/libmuscle-3.7+4565' make[3]: Entering directory '/build/libmuscle-3.7+4565' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libmuscle-3.7+4565/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libMUSCLE.pc '/build/libmuscle-3.7+4565/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/libmuscle-3.7+4565' make[2]: Leaving directory '/build/libmuscle-3.7+4565' make[1]: Leaving directory '/build/libmuscle-3.7+4565' debian/rules override_dh_install make[1]: Entering directory '/build/libmuscle-3.7+4565' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libmuscle-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libmuscle1/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libMUSCLE.a debian/libmuscle-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libMUSCLE.so debian/libmuscle-dev/usr/lib/x86_64-linux-gnu mv /build/libmuscle-3.7+4565/debian/tmp/usr/lib/x86_64-linux-gnu/libMUSCLE.so.1 debian/libmuscle1/usr/lib/x86_64-linux-gnu mv /build/libmuscle-3.7+4565/debian/tmp/usr/lib/x86_64-linux-gnu/libMUSCLE.so.1.0.0 debian/libmuscle1/usr/lib/x86_64-linux-gnu PKGDEV=libmuscle-dev PKGSHL=libmuscle1 install -d -m 755 debian/libmuscle-dev/usr/include mv debian/tmp/usr/include/libMUSCLE debian/libmuscle-dev/usr/include install -d -m 755 debian/libmuscle-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libmuscle-dev/usr/lib/x86_64-linux-gnu/pkgconfig dh_link -plibmuscle1 usr/lib/x86_64-linux-gnu/libMUSCLE.so.1 usr/lib/x86_64-linux-gnu/libMUSCLE-3.7.so.1 make[1]: Leaving directory '/build/libmuscle-3.7+4565' dh_installdocs dh_installchangelogs dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libmuscle1/DEBIAN/symbols doesn't match completely debian/libmuscle1.symbols --- debian/libmuscle1.symbols (libmuscle1_3.7+4565-6_amd64) +++ dpkg-gensymbolskFYwJg 2022-03-14 18:41:48.825629010 +1400 @@ -840,6 +840,7 @@ _ZNK6muscle8EdgeList8GetCountEv@Base 3.7+4565 _ZNSt6vectorIPN6muscle3SeqESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 3.7+4565 (optional)_ZNSt6vectorIcSaIcEE17_M_realloc_insertIJRKcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base 3.7+4565 + _ZNSt6vectorIcSaIcEE7reserveEm@Base 3.7+4565-6 (optional)_ZNSt6vectorIcSaIcEE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPcS1_EE@Base 3.7+4565 (arch-bits=32)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 3.7+4565 (arch-bits=64)_ZNSt6vectorImSaImEE17_M_realloc_insertIJRKmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_@Base 3.7+4565 dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libmuscle1' in '../libmuscle1_3.7+4565-6_amd64.deb'. dpkg-deb: building package 'libmuscle-dev' in '../libmuscle-dev_3.7+4565-6_amd64.deb'. dpkg-deb: building package 'libmuscle1-dbgsym' in '../libmuscle1-dbgsym_3.7+4565-6_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libmuscle_3.7+4565-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/39472/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/39472/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/39472 and its subdirectories I: Current time: Mon Mar 14 18:41:53 +14 2022 I: pbuilder-time-stamp: 1647232913