I: pbuilder: network access will be disabled during build I: Current time: Sun Dec 5 05:01:39 +14 2021 I: pbuilder-time-stamp: 1638630099 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libchado-perl_1.31-5.dsc] I: copying [./libchado-perl_1.31.orig.tar.gz] I: copying [./libchado-perl_1.31-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Sep 28 08:53:26 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libchado-perl_1.31-5.dsc dpkg-source: info: extracting libchado-perl in libchado-perl-1.31 dpkg-source: info: unpacking libchado-perl_1.31.orig.tar.gz dpkg-source: info: unpacking libchado-perl_1.31-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_perl_headers dpkg-source: info: applying force_SIMPLE dpkg-source: info: applying fix_spelling_manpage dpkg-source: info: applying fix_manpages dpkg-source: info: applying setBinPathForBuilder dpkg-source: info: applying remove_pl_extension.patch dpkg-source: info: applying 0001-Sort-generated-build.conf-for-reproducibility.patch dpkg-source: info: applying 0001-Sort-installed-configuration-file-for-reproducibilit.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2960725/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2960725/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2960725/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=9455f90fbac546258ea732301eba9c80 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2960725 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.3qSOre3XO2/pbuilderrc_axzH --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.3qSOre3XO2/b2 --logfile b2/build.log libchado-perl_1.31-5.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 5.10.0-9-amd64 #1 SMP Debian 5.10.70-1 (2021-09-30) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash -rwxr-xr-x 1 root root 109408 Mar 1 2019 date -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd -rwxr-xr-x 1 root root 93744 Mar 1 2019 df -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 35424 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln -rwxr-xr-x 1 root root 56760 Jul 27 2018 login -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 10 2019 more -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Dec 5 05:01 sh -> bash lrwxrwxrwx 1 root root 4 Nov 8 11:58 sh.distrib -> dash -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty -rwsr-xr-x 1 root root 63568 Jan 10 2019 su -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch -rwxr-xr-x 1 root root 35424 Mar 1 2019 true -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/2960725/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), perl, libclass-dbi-pg-perl, libxml-libxslt-perl, liblog-log4perl-perl, bioperl, libgo-perl, libdbd-pg-perl, libdbi-perl, libgd-gd2-perl, libdigest-md5-file-perl, libgraph-perl, libdata-stag-perl, libxml-perl, libclass-dbi-perl, libclass-dbi-pager-perl, libxml-simple-perl, libwww-perl, libtemplate-perl, libcgi-session-perl, libsql-translator-perl, libdbix-dbstag-perl, libmodule-build-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libclass-dbi-pg-perl; however: Package libclass-dbi-pg-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-libxslt-perl; however: Package libxml-libxslt-perl is not installed. pbuilder-satisfydepends-dummy depends on liblog-log4perl-perl; however: Package liblog-log4perl-perl is not installed. pbuilder-satisfydepends-dummy depends on bioperl; however: Package bioperl is not installed. pbuilder-satisfydepends-dummy depends on libgo-perl; however: Package libgo-perl is not installed. pbuilder-satisfydepends-dummy depends on libdbd-pg-perl; however: Package libdbd-pg-perl is not installed. pbuilder-satisfydepends-dummy depends on libdbi-perl; however: Package libdbi-perl is not installed. pbuilder-satisfydepends-dummy depends on libgd-gd2-perl; however: Package libgd-gd2-perl is not installed. pbuilder-satisfydepends-dummy depends on libdigest-md5-file-perl; however: Package libdigest-md5-file-perl is not installed. pbuilder-satisfydepends-dummy depends on libgraph-perl; however: Package libgraph-perl is not installed. pbuilder-satisfydepends-dummy depends on libdata-stag-perl; however: Package libdata-stag-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-perl; however: Package libxml-perl is not installed. pbuilder-satisfydepends-dummy depends on libclass-dbi-perl; however: Package libclass-dbi-perl is not installed. pbuilder-satisfydepends-dummy depends on libclass-dbi-pager-perl; however: Package libclass-dbi-pager-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-simple-perl; however: Package libxml-simple-perl is not installed. pbuilder-satisfydepends-dummy depends on libwww-perl; however: Package libwww-perl is not installed. pbuilder-satisfydepends-dummy depends on libtemplate-perl; however: Package libtemplate-perl is not installed. pbuilder-satisfydepends-dummy depends on libcgi-session-perl; however: Package libcgi-session-perl is not installed. pbuilder-satisfydepends-dummy depends on libsql-translator-perl; however: Package libsql-translator-perl is not installed. pbuilder-satisfydepends-dummy depends on libdbix-dbstag-perl; however: Package libdbix-dbstag-perl is not installed. pbuilder-satisfydepends-dummy depends on libmodule-build-perl; however: Package libmodule-build-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bioperl{a} bsdmainutils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libappconfig-perl{a} libarchive-zip-perl{a} libb-hooks-op-check-perl{a} libbio-perl-perl{a} libbsd0{a} libcairo2{a} libcapture-tiny-perl{a} libcarp-clan-perl{a} libcdt5{a} libcgi-pm-perl{a} libcgi-session-perl{a} libcgraph6{a} libclass-accessor-chained-perl{a} libclass-accessor-perl{a} libclass-data-inheritable-perl{a} libclass-dbi-pager-perl{a} libclass-dbi-perl{a} libclass-dbi-pg-perl{a} libclass-inspector-perl{a} libclass-makemethods-perl{a} libclass-method-modifiers-perl{a} libclass-trigger-perl{a} libclone-perl{a} libcroco3{a} libdata-page-perl{a} libdata-stag-perl{a} libdatrie1{a} libdbd-pg-perl{a} libdbi-perl{a} libdbix-contextualfetch-perl{a} libdbix-dbschema-perl{a} libdbix-dbstag-perl{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-stacktrace-perl{a} libdigest-md5-file-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libexception-class-perl{a} libexpat1{a} libexporter-lite-perl{a} libfile-listing-perl{a} libfile-sharedir-perl{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfreezethaw-perl{a} libfribidi0{a} libgd-perl{a} libgd3{a} libglib2.0-0{a} libgo-perl{a} libgraph-perl{a} libgraphite2-3{a} libgraphviz-perl{a} libgssapi-krb5-2{a} libgts-0.7-5{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libice6{a} libicu63{a} libima-dbi-perl{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libio-stringy-perl{a} libipc-run-perl{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} libldap-2.4-2{a} libldap-common{a} liblog-log4perl-perl{a} libltdl7{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libmodule-build-perl{a} libmodule-runtime-perl{a} libmoo-perl{a} libncurses6{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpackage-variant-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparams-classify-perl{a} libparse-recdescent-perl{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpq5{a} librole-tiny-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libsql-translator-perl{a} libssl1.1{a} libstrictures-perl{a} libsub-exporter-progressive-perl{a} libsub-name-perl{a} libsub-quote-perl{a} libsub-uplevel-perl{a} libtemplate-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libthai-data{a} libthai0{a} libtiff5{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libuniversal-moniker-perl{a} liburi-perl{a} libwebp6{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxdot4{a} libxext6{a} libxml-libxml-perl{a} libxml-libxslt-perl{a} libxml-namespacesupport-perl{a} libxml-parser-perl{a} libxml-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml-simple-perl{a} libxml-twig-perl{a} libxml-xpath-perl{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxslt1.1{a} libxt6{a} libyaml-perl{a} lsb-base{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} ucf{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl fonts-liberation krb5-locales libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libcache-cache-perl libcgi-fast-perl libclass-dbi-abstractsearch-perl libclass-xsaccessor-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-sqlite3-perl libglib2.0-data libgpm2 libgts-bin libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libipc-shareable-perl libjson-perl liblingua-en-inflect-perl liblist-moreutils-perl liblog-dispatch-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libmodule-signature-perl libpod-readme-perl libpostscript-perl libsasl2-modules libset-scalar-perl libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libtext-iconv-perl libtext-recordparser-perl libtie-ixhash-perl libxml-checker-perl libxml-dom-xpath-perl libxml-sax-expat-perl libxml-sax-writer-perl libxml-writer-perl libyaml-libyaml-perl libyaml-syck-perl lynx perl-doc perl-tk shared-mime-info wget xdg-user-dirs xsltproc 0 packages upgraded, 199 newly installed, 0 to remove and 0 not upgraded. Need to get 48.4 MB of archives. After unpacking 152 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 netbase all 5.6 [19.4 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 libdata-stag-perl all 0.14-2 [448 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libbio-perl-perl all 1.7.2-3 [4553 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get: 24 http://deb.debian.org/debian buster/main amd64 libdevel-stacktrace-perl all 2.0300-1 [28.0 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libexception-class-perl all 1.44-1 [32.3 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libtest-deep-perl all 1.128-1 [48.8 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libalgorithm-diff-perl all 1.19.03-2 [47.9 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libtext-diff-perl all 1.45-1 [27.7 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 libtest-differences-perl all 0.65-1 [18.1 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libsub-uplevel-perl all 0.2800-1 [16.3 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libtest-exception-perl all 0.43-1 [18.7 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libtest-warn-perl all 0.36-1 [16.2 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libtest-most-perl all 0.35-1 [24.5 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 bioperl all 1.7.2-3 [418 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u7 [1539 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1d-0+deb10u7 [845 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u2 [380 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 libcdt5 amd64 2.40.1-6+deb10u1 [60.7 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 libcgraph6 amd64 2.40.1-6+deb10u1 [84.2 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u2 [271 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 libgd3 amd64 2.2.5-5.2 [136 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4 [158 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u1 [63.7 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 libpathplan4 amd64 2.40.1-6+deb10u1 [63.6 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 libxdot4 amd64 2.40.1-6+deb10u1 [57.0 kB] Get: 94 http://deb.debian.org/debian buster/main amd64 libgvc6 amd64 2.40.1-6+deb10u1 [646 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 libgvpr2 amd64 2.40.1-6+deb10u1 [213 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get: 98 http://deb.debian.org/debian buster/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 liblab-gamut1 amd64 2.40.1-6+deb10u1 [220 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get: 102 http://deb.debian.org/debian buster/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get: 103 http://deb.debian.org/debian buster/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get: 104 http://deb.debian.org/debian buster/main amd64 graphviz amd64 2.40.1-6+deb10u1 [596 kB] Get: 105 http://deb.debian.org/debian buster/main amd64 libappconfig-perl all 1.71-2 [67.2 kB] Get: 106 http://deb.debian.org/debian buster/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b1 [11.4 kB] Get: 107 http://deb.debian.org/debian buster/main amd64 libcarp-clan-perl all 6.07-1 [15.3 kB] Get: 108 http://deb.debian.org/debian buster/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get: 109 http://deb.debian.org/debian buster/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get: 110 http://deb.debian.org/debian buster/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get: 111 http://deb.debian.org/debian buster/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get: 112 http://deb.debian.org/debian buster/main amd64 libcgi-session-perl all 4.48-3 [119 kB] Get: 113 http://deb.debian.org/debian buster/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get: 114 http://deb.debian.org/debian buster/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get: 115 http://deb.debian.org/debian buster/main amd64 libclass-accessor-chained-perl all 0.01.1~debian-4 [8300 B] Get: 116 http://deb.debian.org/debian buster/main amd64 libdbi-perl amd64 1.642-1+deb10u2 [775 kB] Get: 117 http://deb.debian.org/debian buster/main amd64 libdbix-contextualfetch-perl all 1.03-4 [8428 B] Get: 118 http://deb.debian.org/debian buster/main amd64 libima-dbi-perl all 0.35-2 [23.7 kB] Get: 119 http://deb.debian.org/debian buster/main amd64 libio-stringy-perl all 2.111-3 [56.5 kB] Get: 120 http://deb.debian.org/debian buster/main amd64 libclass-trigger-perl all 0.14-2 [12.2 kB] Get: 121 http://deb.debian.org/debian buster/main amd64 libuniversal-moniker-perl all 0.08-8 [6920 B] Get: 122 http://deb.debian.org/debian buster/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get: 123 http://deb.debian.org/debian buster/main amd64 libclass-dbi-perl all 3.0.17-4 [120 kB] Get: 124 http://deb.debian.org/debian buster/main amd64 libdata-page-perl all 2.02-2 [10.5 kB] Get: 125 http://deb.debian.org/debian buster/main amd64 libexporter-lite-perl all 0.08-1 [11.1 kB] Get: 126 http://deb.debian.org/debian buster/main amd64 libclass-dbi-pager-perl all 0.08-5 [7916 B] Get: 127 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 128 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u3 [65.8 kB] Get: 129 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u3 [122 kB] Get: 130 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u3 [370 kB] Get: 131 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u3 [158 kB] Get: 132 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 133 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 134 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 135 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u6 [224 kB] Get: 136 http://deb.debian.org/debian buster/main amd64 libpq5 amd64 11.13-0+deb10u1 [170 kB] Get: 137 http://deb.debian.org/debian buster/main amd64 libdbd-pg-perl amd64 3.7.4-3 [207 kB] Get: 138 http://deb.debian.org/debian buster/main amd64 libclass-dbi-pg-perl all 0.09-5 [9290 B] Get: 139 http://deb.debian.org/debian buster/main amd64 libclass-inspector-perl all 1.32-1 [19.1 kB] Get: 140 http://deb.debian.org/debian buster/main amd64 libclass-makemethods-perl all 1.01-5 [294 kB] Get: 141 http://deb.debian.org/debian buster/main amd64 libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get: 142 http://deb.debian.org/debian buster/main amd64 libfreezethaw-perl all 0.5001-2 [16.8 kB] Get: 143 http://deb.debian.org/debian buster/main amd64 libdbix-dbschema-perl all 0.45-1 [63.3 kB] Get: 144 http://deb.debian.org/debian buster/main amd64 libparse-recdescent-perl all 1.967015+dfsg-2 [159 kB] Get: 145 http://deb.debian.org/debian buster/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get: 146 http://deb.debian.org/debian buster/main amd64 libtimedate-perl all 2.3000-2+deb10u1 [38.1 kB] Get: 147 http://deb.debian.org/debian buster/main amd64 libhttp-date-perl all 6.02-1 [10.7 kB] Get: 148 http://deb.debian.org/debian buster/main amd64 libfile-listing-perl all 6.04-1 [10.3 kB] Get: 149 http://deb.debian.org/debian buster/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get: 150 http://deb.debian.org/debian buster/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get: 151 http://deb.debian.org/debian buster/main amd64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get: 152 http://deb.debian.org/debian buster/main amd64 libhttp-message-perl all 6.18-1 [77.8 kB] Get: 153 http://deb.debian.org/debian buster/main amd64 libhttp-cookies-perl all 6.04-1 [17.8 kB] Get: 154 http://deb.debian.org/debian buster/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get: 155 http://deb.debian.org/debian buster/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get: 156 http://deb.debian.org/debian buster/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get: 157 http://deb.debian.org/debian buster/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get: 158 http://deb.debian.org/debian buster/main amd64 libnet-http-perl all 6.18-1 [24.5 kB] Get: 159 http://deb.debian.org/debian buster/main amd64 liblwp-protocol-https-perl all 6.07-2 [9242 B] Get: 160 http://deb.debian.org/debian buster/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get: 161 http://deb.debian.org/debian buster/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 162 http://deb.debian.org/debian buster/main amd64 libwww-perl all 6.36-2 [188 kB] Get: 163 http://deb.debian.org/debian buster/main amd64 libxml-parser-perl amd64 2.44-4 [213 kB] Get: 164 http://deb.debian.org/debian buster/main amd64 libxml-perl all 0.08-3 [93.3 kB] Get: 165 http://deb.debian.org/debian buster/main amd64 libdbix-dbstag-perl all 0.12-2 [102 kB] Get: 166 http://deb.debian.org/debian buster/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get: 167 http://deb.debian.org/debian buster/main amd64 libdevel-callchecker-perl amd64 0.008-1 [15.7 kB] Get: 168 http://deb.debian.org/debian buster/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get: 169 http://deb.debian.org/debian buster/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get: 170 http://deb.debian.org/debian buster/main amd64 libdigest-md5-file-perl all 0.08-1 [10.6 kB] Get: 171 http://deb.debian.org/debian buster/main amd64 libfile-sharedir-perl all 1.116-2 [16.7 kB] Get: 172 http://deb.debian.org/debian buster/main amd64 libgd-perl amd64 2.71-2 [140 kB] Get: 173 http://deb.debian.org/debian buster/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get: 174 http://deb.debian.org/debian buster/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get: 175 http://deb.debian.org/debian buster/main amd64 libxml-twig-perl all 1:3.50-1.1 [179 kB] Get: 176 http://deb.debian.org/debian buster/main amd64 libxml-xpath-perl all 1.44-1 [69.5 kB] Get: 177 http://deb.debian.org/debian buster/main amd64 libgraphviz-perl all 2.22-1 [107 kB] Get: 178 http://deb.debian.org/debian buster/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get: 179 http://deb.debian.org/debian buster/main amd64 libgo-perl all 0.15-7 [267 kB] Get: 180 http://deb.debian.org/debian buster/main amd64 libgraph-perl all 1:0.9704-1 [119 kB] Get: 181 http://deb.debian.org/debian buster/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB] Get: 182 http://deb.debian.org/debian buster/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get: 183 http://deb.debian.org/debian buster/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get: 184 http://deb.debian.org/debian buster/main amd64 liblog-log4perl-perl all 1.49-1 [377 kB] Get: 185 http://deb.debian.org/debian buster/main amd64 libmodule-build-perl all 0.422400-1 [259 kB] Get: 186 http://deb.debian.org/debian buster/main amd64 librole-tiny-perl all 2.000006-1 [19.4 kB] Get: 187 http://deb.debian.org/debian buster/main amd64 libstrictures-perl all 2.000005-1 [18.3 kB] Get: 188 http://deb.debian.org/debian buster/main amd64 libsub-quote-perl all 2.005001-1 [17.9 kB] Get: 189 http://deb.debian.org/debian buster/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get: 190 http://deb.debian.org/debian buster/main amd64 libpackage-variant-perl all 1.003002-1 [20.9 kB] Get: 191 http://deb.debian.org/debian buster/main amd64 libsql-translator-perl all 0.11024-1 [391 kB] Get: 192 http://deb.debian.org/debian buster/main amd64 libtemplate-perl amd64 2.27-1+b1 [566 kB] Get: 193 http://deb.debian.org/debian buster/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get: 194 http://deb.debian.org/debian buster/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get: 195 http://deb.debian.org/debian buster/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get: 196 http://deb.debian.org/debian buster/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get: 197 http://deb.debian.org/debian buster/main amd64 libxslt1.1 amd64 1.1.32-2.2~deb10u1 [237 kB] Get: 198 http://deb.debian.org/debian buster/main amd64 libxml-libxslt-perl amd64 1.96-1+b1 [47.5 kB] Get: 199 http://deb.debian.org/debian buster/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Fetched 48.4 MB in 2s (29.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Selecting previously unselected package libdevel-globaldestruction-perl. Preparing to unpack .../168-libdevel-globaldestruction-perl_0.14-1_all.deb ... Unpacking libdevel-globaldestruction-perl (0.14-1) ... Selecting previously unselected package libdigest-md5-file-perl. Preparing to unpack .../169-libdigest-md5-file-perl_0.08-1_all.deb ... Unpacking libdigest-md5-file-perl (0.08-1) ... Selecting previously unselected package libfile-sharedir-perl. Preparing to unpack .../170-libfile-sharedir-perl_1.116-2_all.deb ... Unpacking libfile-sharedir-perl (1.116-2) ... Selecting previously unselected package libgd-perl. Preparing to unpack .../171-libgd-perl_2.71-2_amd64.deb ... Unpacking libgd-perl (2.71-2) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../172-libio-pty-perl_1%3a1.08-1.1+b5_amd64.deb ... Unpacking libio-pty-perl (1:1.08-1.1+b5) ... Selecting previously unselected package libipc-run-perl. 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Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.422400-1) ... Selecting previously unselected package librole-tiny-perl. Preparing to unpack .../185-librole-tiny-perl_2.000006-1_all.deb ... Unpacking librole-tiny-perl (2.000006-1) ... Selecting previously unselected package libstrictures-perl. Preparing to unpack .../186-libstrictures-perl_2.000005-1_all.deb ... Unpacking libstrictures-perl (2.000005-1) ... Selecting previously unselected package libsub-quote-perl. Preparing to unpack .../187-libsub-quote-perl_2.005001-1_all.deb ... Unpacking libsub-quote-perl (2.005001-1) ... Selecting previously unselected package libmoo-perl. Preparing to unpack .../188-libmoo-perl_2.003004-2_all.deb ... Unpacking libmoo-perl (2.003004-2) ... 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Setting up libgraphite2-3:amd64 (1.3.13-7) ... Setting up libpixman-1-0:amd64 (0.36.0-1) ... Setting up lsb-base (10.2019051400) ... Setting up libuniversal-moniker-perl (0.08-8) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libclass-inspector-perl (1.32-1) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libdatrie1:amd64 (0.2.12-2) ... Setting up libtest-deep-perl (1.128-1) ... Setting up libclass-method-modifiers-perl (2.12-1) ... Setting up libio-pty-perl (1:1.08-1.1+b5) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up libclone-perl (0.41-1+b1) ... Setting up libalgorithm-diff-perl (1.19.03-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up libio-stringy-perl (2.111-3) ... Setting up libssl1.1:amd64 (1.1.1d-0+deb10u7) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up liblab-gamut1 (2.40.1-6+deb10u1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.30-1) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libencode-locale-perl (1.05-1) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libgraph-perl (1:0.9704-1) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u6) ... Setting up libyaml-perl (1.27-1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up libmodule-build-perl (0.422400-1) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u3) ... Setting up libfreezethaw-perl (0.5001-2) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up autotools-dev (20180224.1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up liblog-log4perl-perl (1.49-1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Setting up libx11-data (2:1.6.7-1+deb10u2) ... Setting up libtext-diff-perl (1.45-1) ... Setting up libpathplan4 (2.40.1-6+deb10u1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libfribidi0:amd64 (1.0.5-3.1+deb10u1) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up libio-html-perl (1.001-1) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:amd64 (0.6.1-2+deb10u1) ... Setting up libb-hooks-op-check-perl (0.22-1+b1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u3) ... Setting up libltdl7:amd64 (2.4.6-9) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2+deb10u1) ... Setting up libexporter-lite-perl (0.08-1) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libparse-recdescent-perl (1.967015+dfsg-2) ... Setting up libclass-trigger-perl (0.14-2) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up librole-tiny-perl (2.000006-1) ... Setting up libfile-sharedir-perl (1.116-2) ... Setting up libsub-uplevel-perl (0.2800-1) ... Setting up libthai-data (0.1.28-2) ... Setting up libcarp-clan-perl (6.07-1) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up netbase (5.6) ... Setting up libstrictures-perl (2.000005-1) ... Setting up libsub-quote-perl (2.005001-1) ... Setting up libdevel-stacktrace-perl (2.0300-1) ... Setting up libcdt5 (2.40.1-6+deb10u1) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u3) ... Setting up libcgraph6 (2.40.1-6+deb10u1) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u2) ... Setting up libbio-perl-perl (1.7.2-3) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up openssl (1.1.1d-0+deb10u7) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up liburi-perl (1.76-1) ... Setting up libappconfig-perl (1.71-2) ... Setting up libdbi-perl:amd64 (1.642-1+deb10u2) ... Setting up libclass-makemethods-perl (1.01-5) ... Setting up libnet-ssleay-perl (1.85-2+b1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libdbix-dbschema-perl (0.45-1) ... Setting up libtool (2.4.6-9) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libtest-warn-perl (0.36-1) ... Setting up libtest-differences-perl (0.65-1) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u6) ... Setting up libnet-http-perl (6.18-1) ... Setting up m4 (1.4.18-2) ... Setting up libclass-accessor-chained-perl (0.01.1~debian-4) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libexception-class-perl (1.44-1) ... Setting up libdevel-callchecker-perl (0.008-1) ... Setting up libdbix-contextualfetch-perl (1.03-4) ... Setting up libthai0:amd64 (0.1.28-2) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 137 added, 0 removed; done. Setting up libima-dbi-perl (0.35-2) ... Setting up libtest-exception-perl (0.43-1) ... Setting up libdata-page-perl (2.02-2) ... Setting up libfreetype6:amd64 (2.9.1-3+deb10u2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u3) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up libtemplate-perl (2.27-1+b1) ... Setting up autoconf (2.69-11) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libgvpr2 (2.40.1-6+deb10u1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up libxslt1.1:amd64 (1.1.32-2.2~deb10u1) ... Setting up libclass-dbi-perl (3.0.17-4) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up libhttp-message-perl (6.18-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhttp-negotiate-perl (6.01-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libhttp-cookies-perl (6.04-1) ... Setting up libtest-most-perl (0.35-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl (0.015-1+b1) ... Setting up libcgi-pm-perl (4.40-1) ... Setting up libpq5:amd64 (11.13-0+deb10u1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libdbd-pg-perl (3.7.4-3) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libcgi-session-perl (4.48-3) ... Setting up libclass-dbi-pager-perl (0.08-5) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up bioperl (1.7.2-3) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libclass-dbi-pg-perl (0.09-5) ... Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.003004-2) ... Setting up po-debconf (1.0.21) ... Setting up libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libcairo2:amd64 (1.16.0-4+deb10u1) ... Setting up libgd3:amd64 (2.2.5-5.2) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libxml-libxslt-perl (1.96-1+b1) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libpackage-variant-perl (1.003002-1) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libsql-translator-perl (0.11024-1) ... Setting up libgd-perl (2.71-2) ... Setting up libgvc6 (2.40.1-6+deb10u1) ... Setting up graphviz (2.40.1-6+deb10u1) ... Setting up dh-autoreconf (19) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up libwww-perl (6.36-2) ... Setting up debhelper (12.1.1) ... Setting up libdigest-md5-file-perl (0.08-1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up libxml-parser-perl (2.44-4) ... Setting up libxml-twig-perl (1:3.50-1.1) ... Setting up libxml-xpath-perl (1.44-1) ... Setting up libxml-perl (0.08-3) ... Setting up libgraphviz-perl (2.22-1) ... Setting up libdbix-dbstag-perl (0.12-2) ... Setting up libgo-perl (0.15-7) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package hostname: Name or service not known I: Running cd /build/libchado-perl-1.31/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libchado-perl_1.31-5_source.changes dpkg-buildpackage: info: source package libchado-perl dpkg-buildpackage: info: source version 1.31-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --buildsystem=perl_makemaker dh_auto_clean -O--buildsystem=perl_makemaker dh_autoreconf_clean -O--buildsystem=perl_makemaker dh_clean -O--buildsystem=perl_makemaker debian/rules build dh build --buildsystem=perl_makemaker dh_update_autotools_config -O--buildsystem=perl_makemaker dh_autoreconf -O--buildsystem=perl_makemaker debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libchado-perl-1.31' perl Makefile.PL INSTALL_BASE=/usr DBNAME=gmod-chado DBUSER=chado DBPASS=chado DBHOST=localhost DBPORT=5432 GMOD_ROOT=/build/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado DBDRIVER=PostgreSQL RECONFIGURE=1 SIMPLE=Y LOCAL_TMP=/build/libchado-perl-1.31/debian/libchado-perl/tmp Building with the following database options: GMOD_ROOT=/build/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado DBDRIVER=PostgreSQL DBNAME=gmod-chado DBUSER=chado DBPASS=chado DBHOST=localhost DBPORT=5432 SCHEMA= LOCAL_TMP=/build/libchado-perl-1.31/debian/libchado-perl/tmp DBORGANISM= DEFAULT= VERSION=1.31 Extracting /build/libchado-perl-1.31/bin/../lib/Bio/Chado/AutoDBI.pm (with variable substitutions) initializing load scripts... Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Chado' version '1.31' Building Chado Checking if your kit is complete... Looks good Warning: prerequisite Bio::Chado::Schema 0 not found. Generating a Unix-style Makefile Writing Makefile for chado Writing MYMETA.yml and MYMETA.json -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- Makefile written. Now you should do the following, in order: 1. make (creates necessary build files) 2. sudo make install (creates $GMOD_ROOT and subdirectories) -*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*WARNING-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-* STEP 3 WILL DELETE ANY DATA IN A DATABASE WITH THE DATABASE NAME YOU PROVIDED! -*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*WARNING-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-* 3a. make load_schema (loads SQL schema into database) or 3b. make update (update an old Chado schema and stop here) 4. make prepdb (loads basic data) 5. make ontologies (loads data for various ontologies) Optional Targets: make rm_locks (removes ontology lock files, allowing installation of ontologies on successive builds of the database without removing the ontology files altogether) make clean (remove build related files and ontology tmp dir) make instructions (at any moment display these instructions) -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- make[1]: Leaving directory '/build/libchado-perl-1.31' dh_auto_build -O--buildsystem=perl_makemaker make -j15 make[1]: Entering directory '/build/libchado-perl-1.31' Skip blib/lib/Bio/GMOD/DB/Adapter/FeatureIterator.pm (unchanged) Skip blib/lib/Bio/GMOD/DB/Adapter.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/MySplitLocation.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/SWISS_CRC64.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/BulkWriter.pm (unchanged) Skip blib/lib/Bio/GMOD/Load/GFF.pm (unchanged) Skip blib/lib/Bio/FeatureIO/chado.pm (unchanged) Skip blib/lib/Bio/GMOD/DB/Tools/ETA.pm (unchanged) Skip blib/lib/Bio/GMOD/SeqUtils.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/BlastWriter.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/TableWriter.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/GenbankSubmitWriter.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/FastaWriter.pm (unchanged) Skip blib/lib/Bio/Chado/Config.pm (unchanged) Skip blib/lib/Bio/GMOD/Load.pm (unchanged) Skip blib/lib/Bio/Chado/Builder.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/GnomapWriter.pm (unchanged) Skip blib/lib/Bio/GMOD/Config2.pm (unchanged) Skip blib/lib/Bio/GMOD/DB/Config.pm (unchanged) Skip blib/lib/Bio/FeatureIO/chadobulk.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/FeatureWriter.pm (unchanged) Skip blib/lib/Bio/GMOD/Config.pm (unchanged) Skip blib/lib/Bio/Chado/AutoDBI.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/AcodeWriter.pm (unchanged) Skip blib/lib/Bio/GMOD/DB/Adapter/Wormbase.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/MyLargePrimarySeq.pm (unchanged) "/usr/bin/perl" "-Iblib/arch" "-Iblib/lib" load/bin/bulk_load_gff3.PLS load/bin/gmod_bulk_load_gff3.pl "/usr/bin/perl" "-Iblib/arch" "-Iblib/lib" install_util/conf_install.PLS install_util/conf_install.pl Extracting conf_install.pl (with variable substitutions) "/usr/bin/perl" "-Iblib/arch" "-Iblib/lib" install_util/src_install.PLS install_util/src_install.pl Extracting src_install.pl (with variable substitutions) cp bin/gmod_add_organism.pl blib/script/gmod_add_organism.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_add_organism.pl cp bin/gmod_apollo_triggers.pl blib/script/gmod_apollo_triggers.pl cp load/bin/gmod_bulk_load_gff3.pl blib/script/gmod_bulk_load_gff3.pl cp bin/gmod_bulk_load_pubmed.pl blib/script/gmod_bulk_load_pubmed.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_apollo_triggers.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_bulk_load_gff3.pl cp bin/gmod_chado_properties.pl blib/script/gmod_chado_properties.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_bulk_load_pubmed.pl cp bin/gmod_extract_dbxref_from_gff.pl blib/script/gmod_extract_dbxref_from_gff.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_chado_properties.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_extract_dbxref_from_gff.pl cp bin/gmod_fasta2gff3.pl blib/script/gmod_fasta2gff3.pl cp bin/gmod_gff3_preprocessor.pl blib/script/gmod_gff3_preprocessor.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_fasta2gff3.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_gff3_preprocessor.pl cp bin/gmod_load_cvterms.pl blib/script/gmod_load_cvterms.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_load_cvterms.pl cp bin/gmod_make_cvtermpath.pl blib/script/gmod_make_cvtermpath.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_make_cvtermpath.pl cp bin/gmod_make_gff_from_dbxref.pl blib/script/gmod_make_gff_from_dbxref.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_make_gff_from_dbxref.pl cp bin/gmod_materialized_view_tool.pl blib/script/gmod_materialized_view_tool.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_materialized_view_tool.pl cp bin/gmod_sort_gff3.pl blib/script/gmod_sort_gff3.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_sort_gff3.pl Manifying 12 pod documents Manifying 26 pod documents make[1]: Leaving directory '/build/libchado-perl-1.31' debian/rules override_dh_auto_test make[1]: Entering directory '/build/libchado-perl-1.31' echo "Skipping tests to avoid db access" Skipping tests to avoid db access make[1]: Leaving directory '/build/libchado-perl-1.31' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --buildsystem=perl_makemaker dh_testroot -O--buildsystem=perl_makemaker dh_prep -O--buildsystem=perl_makemaker dh_installdirs -O--buildsystem=perl_makemaker dh_auto_install -O--buildsystem=perl_makemaker make -j15 install DESTDIR=/build/libchado-perl-1.31/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/libchado-perl-1.31' "/usr/bin/perl" "/build/libchado-perl-1.31/install_util/conf_install.pl" 'GMOD_ROOT=/build/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado' 'VERSION=1.31' "/usr/bin/perl" "/build/libchado-perl-1.31/install_util/src_install.pl" 'GMOD_ROOT=/build/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado' Manifying 12 pod documents Manifying 26 pod documents Appending installation info to /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/x86_64-linux-gnu-thread-multi/perllocal.pod Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/SeqUtils.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Load.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Config2.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Config.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Load/GFF.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Config.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Tools/ETA.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter/Wormbase.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter/FeatureIterator.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/TableWriter.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/SWISS_CRC64.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/MySplitLocation.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/MyLargePrimarySeq.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/GnomapWriter.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/GenbankSubmitWriter.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/FeatureWriter.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/FastaWriter.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/BulkWriter.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/BlastWriter.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/AcodeWriter.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/FeatureIO/chadobulk.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/FeatureIO/chado.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/Config.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/Builder.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/AutoDBI.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_bulk_load_gff3.pl.1p Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_sort_gff3.pl.1p Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_materialized_view_tool.pl.1p Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_make_gff_from_dbxref.pl.1p Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_make_cvtermpath.pl.1p Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_load_cvterms.pl.1p Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_gff3_preprocessor.pl.1p Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_fasta2gff3.pl.1p Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_extract_dbxref_from_gff.pl.1p Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_chado_properties.pl.1p Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_bulk_load_pubmed.pl.1p Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_add_organism.pl.1p Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::SeqUtils.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Load::GFF.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Load.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Tools::ETA.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Config.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter::Wormbase.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter::FeatureIterator.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Config2.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Config.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::TableWriter.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::SWISS_CRC64.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::MySplitLocation.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::MyLargePrimarySeq.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::GnomapWriter.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::GenbankSubmitWriter.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::FeatureWriter.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::FastaWriter.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::BulkWriter.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::BlastWriter.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::AcodeWriter.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::FeatureIO::chadobulk.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::FeatureIO::chado.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::Chado::Config.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::Chado::Builder.3pm Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_sort_gff3.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_materialized_view_tool.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_make_gff_from_dbxref.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_make_cvtermpath.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_gff3_preprocessor.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_load_cvterms.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_chado_properties.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_fasta2gff3.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_extract_dbxref_from_gff.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_apollo_triggers.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulk_load_pubmed.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulk_load_gff3.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_add_organism.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/ucsc_snp2gff.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/ucsc_genes2gff.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/test_load.sh Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/test_load.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/privileges.tmpl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2html.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2graphviz_svg.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2graphviz.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2diagram.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2cdbi_viaTT.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/pg2cdbi.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/make_partial_indexes.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/make_cvtermpath.sh Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/make_cvtermpath.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/load_taxonomy_cvterms.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/load_ncbi_taxonomy.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/interactions2SIF.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_update_chado.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_gff2biomart5.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_dump_gff3.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulkfiles.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/gencode2sql.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/ddltrans Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/dbi.tt2 Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/create_so_bridge_command Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/create-so-bridge.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/create-bridge-sql.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/config.PLS Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/chado-fix-flybase-instance.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/chado-build-schema.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/addcascades Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/Skip_tables.pm Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/GMODCallHome.pl Installing /build/libchado-perl-1.31/debian/tmp/usr/bin/AutoDBI.PL make[1]: Leaving directory '/build/libchado-perl-1.31' debian/rules override_dh_install make[1]: Entering directory '/build/libchado-perl-1.31' dh_install -O--buildsystem=perl_makemaker rm -f debian/libchado-perl/usr/share/gmod/chado/load/etc/load.conf sed -i 's/SQLFILE=\/.*\/libchado-perl/SQLFILE=/' debian/libchado-perl/usr/share/gmod/chado/conf/gmod-chado.conf sed -i 's/TMP=\/.*\/tmp/CONF=\/tmp/' debian/libchado-perl/usr/share/gmod/chado/conf/gmod.conf sed -i 's/CONF=.*\/conf/CONF=\/etc\/gmod/' debian/libchado-perl/usr/share/gmod/chado/conf/gmod.conf mv /build/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado/conf/* debian/libchado-perl/etc/gmod/ # Give exexution rights to perl scripts find debian/libchado-perl/ -name *.pl | xargs chmod 755 find debian/libchado-perl/ -name *.tmpl | xargs chmod 644 find debian/libchado-perl/ -name *.pm | xargs chmod 644 find debian/libchado-perl/ -name *.pod | xargs rm -f find debian/libchado-perl/ -name .packlist | xargs rm -f find debian/libchado-perl/ -name "*.sql" | xargs chmod a-x chmod 755 debian/libchado-perl/usr/share/gmod/chado/soi/t/t_soi_parse_intersect chmod 755 debian/libchado-perl/usr/share/gmod/chado/src/chado/modules/audit/make_audit_ddl mv debian/tmp/usr/bin/test* debian/libchado-perl/usr/share/gmod/chado/bin/ mv debian/tmp/usr/bin/gmod_chado* debian/libchado-perl/usr/share/gmod/chado/bin/ mv debian/tmp/usr/bin/config* debian/libchado-perl/usr/share/gmod/chado/bin/ mv debian/tmp/usr/bin/Auto* debian/libchado-perl/usr/share/gmod/chado/bin/ mv debian/tmp/usr/bin/* debian/chado-utils/usr/share/gmod/chado/bin/ mv debian/tmp/usr/lib/perl5/* debian/libchado-perl/usr/share/perl5/ rm -rf debian/libchado-perl/usr/lib/perl5 mv debian/tmp/usr/man/man3 debian/libchado-perl/usr/share/man mv debian/tmp/usr/man/man1 debian/chado-utils/usr/share/man cp debian/testdb.pl debian/libchado-perl/usr/share/gmod/chado/bin/ rm -rf debian/libchado-perl/usr/share/perl5/x86_64-linux-gnu-thread-multi # Needed for runtime configure rm -rf debian/libchado-perl/usr/share/gmod/chado/lib rm -rf debian/libchado-perl/usr/bin rm -rf debian/libchado-perl/usr/lib rm -rf debian/libchado-perl/usr/share/gmod/chado/load/logs rm -rf debian/libchado-perl/usr/share/gmod/chado/tmp # Remove not required man pages for user (also contains pod2man errors and missing what-is) rm -rf debian/libchado-perl/usr/share/man # Fix perl interpreter path for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/libchado-perl-1.31' debian/rules override_dh_installdocs make[1]: Entering directory '/build/libchado-perl-1.31' dh_installdocs # remove installation doc find debian -name "INSTALL.Chado*" -delete make[1]: Leaving directory '/build/libchado-perl-1.31' dh_installchangelogs -O--buildsystem=perl_makemaker dh_installexamples -O--buildsystem=perl_makemaker dh_installman -O--buildsystem=perl_makemaker dh_installinit -O--buildsystem=perl_makemaker dh_lintian -O--buildsystem=perl_makemaker dh_perl -O--buildsystem=perl_makemaker dh_link -O--buildsystem=perl_makemaker dh_strip_nondeterminism -O--buildsystem=perl_makemaker dh_compress -O--buildsystem=perl_makemaker debian/rules override_dh_fixperms make[1]: Entering directory '/build/libchado-perl-1.31' dh_fixperms chmod 644 debian/libchado-perl/etc/gmod/gmod-chado.conf find debian -name create_so_bridge_command -exec chmod 644 \{\} \; find debian -name Skip_tables.pm -exec chmod 644 \{\} \; find debian -name "*.tt2" -exec chmod 644 \{\} \; find debian -name "*.tmpl" -exec chmod 644 \{\} \; make[1]: Leaving directory '/build/libchado-perl-1.31' dh_missing -O--buildsystem=perl_makemaker dh_installdeb -O--buildsystem=perl_makemaker dh_gencontrol -O--buildsystem=perl_makemaker dh_md5sums -O--buildsystem=perl_makemaker dh_builddeb -O--buildsystem=perl_makemaker dpkg-deb: building package 'chado-utils' in '../chado-utils_1.31-5_all.deb'. dpkg-deb: building package 'libchado-perl' in '../libchado-perl_1.31-5_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libchado-perl_1.31-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2960725/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2960725/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2960725 and its subdirectories I: Current time: Sun Dec 5 05:02:37 +14 2021 I: pbuilder-time-stamp: 1638630157