I: pbuilder: network access will be disabled during build I: Current time: Sun Jul 31 09:16:15 +14 2022 I: pbuilder-time-stamp: 1659208575 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-primerdesigner-perl_0.07-6.dsc] I: copying [./libbio-primerdesigner-perl_0.07.orig.tar.gz] I: copying [./libbio-primerdesigner-perl_0.07-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Jul 18 23:08:34 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbio-primerdesigner-perl_0.07-6.dsc dpkg-source: info: extracting libbio-primerdesigner-perl in libbio-primerdesigner-perl-0.07 dpkg-source: info: unpacking libbio-primerdesigner-perl_0.07.orig.tar.gz dpkg-source: info: unpacking libbio-primerdesigner-perl_0.07-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build.pl-getopt-long.patch dpkg-source: info: applying no-hash-manipulation-inside-each.patch dpkg-source: info: applying spelling.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/20874/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/20874/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/20874/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=72b63d6cc2df4fbd8452548210ae4481 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=20874 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ONBfFIzsru/pbuilderrc_sui7 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ONBfFIzsru/b2 --logfile b2/build.log libbio-primerdesigner-perl_0.07-6.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 5.10.0-0.bpo.7-amd64 #1 SMP Debian 5.10.40-1~bpo10+1 (2021-06-04) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash -rwxr-xr-x 1 root root 109408 Mar 1 2019 date -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd -rwxr-xr-x 1 root root 93744 Mar 1 2019 df -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 35424 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln -rwxr-xr-x 1 root root 56760 Jul 27 2018 login -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 10 2019 more -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Jul 31 09:16 sh -> bash lrwxrwxrwx 1 root root 4 Jul 25 04:47 sh.distrib -> dash -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty -rwsr-xr-x 1 root root 63568 Jan 10 2019 su -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch -rwxr-xr-x 1 root root 35424 Mar 1 2019 true -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/20874/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), libmodule-build-perl, perl, libwww-perl, libclass-base-perl, libreadonly-perl, libtest-pod-perl, libtest-pod-coverage-perl, primer3, ncbi-epcr dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libmodule-build-perl; however: Package libmodule-build-perl is not installed. pbuilder-satisfydepends-dummy depends on libwww-perl; however: Package libwww-perl is not installed. pbuilder-satisfydepends-dummy depends on libclass-base-perl; however: Package libclass-base-perl is not installed. pbuilder-satisfydepends-dummy depends on libreadonly-perl; however: Package libreadonly-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-pod-perl; however: Package libtest-pod-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-pod-coverage-perl; however: Package libtest-pod-coverage-perl is not installed. pbuilder-satisfydepends-dummy depends on primer3; however: Package primer3 is not installed. pbuilder-satisfydepends-dummy depends on ncbi-epcr; however: Package ncbi-epcr is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libclass-base-perl{a} libclone-perl{a} libcroco3{a} libdevel-symdump-perl{a} libelf1{a} libencode-locale-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu63{a} libio-html-perl{a} libio-socket-ssl-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libmodule-build-perl{a} libncurses6{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libpod-coverage-perl{a} libreadonly-perl{a} libsigsegv2{a} libssl1.1{a} libtest-pod-coverage-perl{a} libtest-pod-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} ncbi-epcr{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} primer3{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libdata-dump-perl libglib2.0-data libgpm2 libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmodule-signature-perl libpod-readme-perl libsoftware-license-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 68 newly installed, 0 to remove and 0 not upgraded. Need to get 23.7 MB of archives. After unpacking 81.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 netbase all 5.6 [19.4 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u6 [1539 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1d-0+deb10u6 [844 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 libclass-base-perl all 0.09-1 [18.1 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libdevel-symdump-perl all 2.18-3 [17.3 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libtimedate-perl all 2.3000-2+deb10u1 [38.1 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 libhttp-date-perl all 6.02-1 [10.7 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libfile-listing-perl all 6.04-1 [10.3 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libhttp-message-perl all 6.18-1 [77.8 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libhttp-cookies-perl all 6.04-1 [17.8 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get: 55 http://deb.debian.org/debian buster/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 libnet-http-perl all 6.18-1 [24.5 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 libwww-perl all 6.36-2 [188 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 liblwp-protocol-https-perl all 6.07-2 [9242 B] Get: 62 http://deb.debian.org/debian buster/main amd64 libmodule-build-perl all 0.422400-1 [259 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libpod-coverage-perl all 0.23-1 [23.9 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libreadonly-perl all 2.050-1 [22.7 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 libtest-pod-coverage-perl all 1.10-2 [14.5 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libtest-pod-perl all 1.52-1 [14.2 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 ncbi-epcr amd64 2.3.12-1-7 [123 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 primer3 amd64 2.4.0-2 [180 kB] Fetched 23.7 MB in 1s (26.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.422400-1) ... Selecting previously unselected package libpod-coverage-perl. Preparing to unpack .../62-libpod-coverage-perl_0.23-1_all.deb ... Unpacking libpod-coverage-perl (0.23-1) ... Selecting previously unselected package libreadonly-perl. Preparing to unpack .../63-libreadonly-perl_2.050-1_all.deb ... Unpacking libreadonly-perl (2.050-1) ... Selecting previously unselected package libtest-pod-coverage-perl. Preparing to unpack .../64-libtest-pod-coverage-perl_1.10-2_all.deb ... Unpacking libtest-pod-coverage-perl (1.10-2) ... Selecting previously unselected package libtest-pod-perl. Preparing to unpack .../65-libtest-pod-perl_1.52-1_all.deb ... Unpacking libtest-pod-perl (1.52-1) ... 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Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libtool (2.4.6-9) ... Setting up libpod-coverage-perl (0.23-1) ... Setting up libnet-http-perl (6.18-1) ... Setting up m4 (1.4.18-2) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 137 added, 0 removed; done. Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up libtest-pod-coverage-perl (1.10-2) ... Setting up libio-socket-ssl-perl (2.060-3) ... 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Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libbio-primerdesigner-perl-0.07/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libbio-primerdesigner-perl dpkg-buildpackage: info: source version 0.07-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --buildsystem=perl_build dh_auto_clean -O--buildsystem=perl_build dh_autoreconf_clean -O--buildsystem=perl_build dh_clean -O--buildsystem=perl_build debian/rules build dh build --buildsystem=perl_build dh_update_autotools_config -O--buildsystem=perl_build dh_autoreconf -O--buildsystem=perl_build dh_auto_configure -O--buildsystem=perl_build perl Build.PL --installdirs vendor --config "optimize=-g -O2 -ffile-prefix-map=/build/libbio-primerdesigner-perl-0.07=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/libbio-primerdesigner-perl-0.07=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro" Use of uninitialized value $url in concatenation (.) or string at Build.PL line 62, <$in_fh> line 42. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-PrimerDesigner' version '0.04' Now run './Build' and './Build install' dh_auto_build -O--buildsystem=perl_build perl Build Building Bio-PrimerDesigner debian/rules override_dh_auto_test make[1]: Entering directory '/build/libbio-primerdesigner-perl-0.07' RES_OPTIONS=attempts:0 dh_auto_test -- --test_files "t/tables.t t/result.t t/primer3.t t/pod-coverage.t t/epcr.t t/pod.t t/primer_designer.t" perl Build test --verbose 1 --test_files "t/tables.t t/result.t t/primer3.t t/pod-coverage.t t/epcr.t t/pod.t t/primer_designer.t" Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. t/tables.t ........... 1..10 ok 1 - use Bio::PrimerDesigner::Tables; ok 2 - An object of class 'Bio::PrimerDesigner::Tables' isa 'Bio::PrimerDesigner::Tables' ok 3 # skip Can't get remote server call to work ok 4 # skip Can't get remote server call to work ok 5 # skip Can't get remote server call to work ok 6 # skip Can't get remote server call to work ok 7 # skip Can't get remote server call to work ok 8 # skip Can't get remote server call to work ok 9 # skip Can't get remote server call to work ok 10 # skip Can't get remote server call to work ok Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. t/result.t ........... 1..3 ok 1 - use Bio::PrimerDesigner; ok 2 # skip Can't get remote server call to work ok 3 # skip Can't get remote server call to work ok Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. t/primer3.t .......... 1..7 ok 1 - use Bio::PrimerDesigner; ok 2 - An object of class 'Bio::PrimerDesigner' isa 'Bio::PrimerDesigner' ok 3 - 'program' isa 'Bio::PrimerDesigner::primer3' ok 4 - binary_name is "primer3" ok 5 - program returns params ok 6 - program returns aliases ok 7 - design method fails without arguments ok t/pod-coverage.t ..... 1..8 ok 1 - Pod coverage on Bio::PrimerDesigner ok 2 - Pod coverage on Bio::PrimerDesigner::primer3 ok 3 - Pod coverage on Bio::PrimerDesigner::ispcr ok 4 - Pod coverage on Bio::PrimerDesigner::epcr ok 5 - Pod coverage on Bio::PrimerDesigner::Tables ok 6 - Pod coverage on Bio::PrimerDesigner::Result ok 7 - Pod coverage on Bio::PrimerDesigner::Remote ok 8 - Pod coverage on Bio::PrimerDesigner::Config ok Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. t/epcr.t ............. 1..8 ok 1 - use Bio::PrimerDesigner; ok 2 - An object of class 'Bio::PrimerDesigner' isa 'Bio::PrimerDesigner' ok 3 - 'program' isa 'Bio::PrimerDesigner::epcr' ok 4 - binary_name is "e-PCR" ok 5 - program returns params ok 6 - program returns no aliases ok 7 - e-PCR verification fails with no args ok 8 - run method fails with no arguments ok t/pod.t .............. 1..9 ok 1 - POD test for blib/script/primer_designer ok 2 - POD test for blib/lib/Bio/PrimerDesigner.pm ok 3 - POD test for blib/lib/Bio/PrimerDesigner/primer3.pm ok 4 - POD test for blib/lib/Bio/PrimerDesigner/ispcr.pm ok 5 - POD test for blib/lib/Bio/PrimerDesigner/epcr.pm ok 6 - POD test for blib/lib/Bio/PrimerDesigner/Tables.pm ok 7 - POD test for blib/lib/Bio/PrimerDesigner/Result.pm ok 8 - POD test for blib/lib/Bio/PrimerDesigner/Remote.pm ok 9 - POD test for blib/lib/Bio/PrimerDesigner/Config.pm ok Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. t/primer_designer.t .. 1..22 ok 1 - use Bio::PrimerDesigner; ok 2 - An object of class 'Bio::PrimerDesigner' isa 'Bio::PrimerDesigner' ok 3 - An object of class 'Bio::PrimerDesigner::primer3' isa 'Bio::PrimerDesigner::primer3' ok 4 - Default method for unix-like OS is "local" ok 5 - Default binary path for unix-like OS is "/usr/local/bin" ok 6 - binary_path set to "/bin" ok 7 - binary_path rejects bad arg ok 8 - Error message set ok 9 - binary_path remembers last good arg ok 10 - 'object with args' isa 'Bio::PrimerDesigner' ok 11 - method is "remote" ok 12 - url is "https://www.google.com/" ok 13 - An object of class 'Bio::PrimerDesigner::epcr' isa 'Bio::PrimerDesigner::epcr' ok 14 - method set to "remote" ok 15 - method rejects bad arg ok 16 - Error message set ok 17 - method remembers last good arg ok 18 - url set to "http://www.google.com" ok 19 - 'program' isa 'Bio::PrimerDesigner::epcr' ok 20 - program rejects bad arg ok 21 - Error message set ok 22 - 'program still' isa 'Bio::PrimerDesigner::epcr' ok All tests successful. Files=7, Tests=67, 4 wallclock secs ( 0.07 usr 0.01 sys + 1.54 cusr 0.26 csys = 1.88 CPU) Result: PASS make[1]: Leaving directory '/build/libbio-primerdesigner-perl-0.07' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --buildsystem=perl_build dh_testroot -O--buildsystem=perl_build dh_prep -O--buildsystem=perl_build debian/rules override_dh_auto_install make[1]: Entering directory '/build/libbio-primerdesigner-perl-0.07' dh_auto_install perl Build install --destdir /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl --create_packlist 0 Building Bio-PrimerDesigner Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man1/primer_designer.1p Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/primer3.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/ispcr.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/epcr.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Tables.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Result.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Remote.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Config.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::primer3.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::ispcr.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::epcr.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Tables.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Result.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Remote.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Config.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/bin/primer_designer # remove empty manpage without whatis entry rm -f -v /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Config.3pm removed '/build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Config.3pm' make[1]: Leaving directory '/build/libbio-primerdesigner-perl-0.07' dh_installdocs -O--buildsystem=perl_build dh_installchangelogs -O--buildsystem=perl_build dh_installman -O--buildsystem=perl_build dh_installinit -O--buildsystem=perl_build dh_perl -O--buildsystem=perl_build dh_link -O--buildsystem=perl_build dh_strip_nondeterminism -O--buildsystem=perl_build dh_compress -O--buildsystem=perl_build dh_fixperms -O--buildsystem=perl_build dh_missing -O--buildsystem=perl_build dh_installdeb -O--buildsystem=perl_build dh_gencontrol -O--buildsystem=perl_build dh_md5sums -O--buildsystem=perl_build dh_builddeb -O--buildsystem=perl_build dpkg-deb: building package 'libbio-primerdesigner-perl' in '../libbio-primerdesigner-perl_0.07-6_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libbio-primerdesigner-perl_0.07-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/20874/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/20874/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/20874 and its subdirectories I: Current time: Sun Jul 31 09:18:30 +14 2022 I: pbuilder-time-stamp: 1659208710