I: pbuilder: network access will be disabled during build I: Current time: Fri Aug 13 11:08:56 +14 2021 I: pbuilder-time-stamp: 1628802536 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [barclay_2.1.0-3.dsc] I: copying [./barclay_2.1.0.orig.tar.xz] I: copying [./barclay_2.1.0-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Jan 17 23:45:08 2019 +14 gpgv: using RSA key 5FB46F83D3B952046335D26D78DC68DB326D8438 gpgv: issuer "osallou@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./barclay_2.1.0-3.dsc dpkg-source: info: extracting barclay in barclay-2.1.0 dpkg-source: info: unpacking barclay_2.1.0.orig.tar.xz dpkg-source: info: unpacking barclay_2.1.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_debian_build.patch dpkg-source: info: applying fix_deprecation.patch dpkg-source: info: applying fix_dataprovider.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/12823/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/12823/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/12823/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=000808b40e8e47ed9ab1a9ab02f65798 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=12823 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.RMsFcbYXsZ/pbuilderrc_SZD2 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.RMsFcbYXsZ/b2 --logfile b2/build.log barclay_2.1.0-3.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash -rwxr-xr-x 1 root root 109408 Mar 1 2019 date -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd -rwxr-xr-x 1 root root 93744 Mar 1 2019 df -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 35424 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln -rwxr-xr-x 1 root root 56760 Jul 27 2018 login -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 10 2019 more -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Aug 13 11:09 sh -> bash lrwxrwxrwx 1 root root 4 Aug 7 22:24 sh.distrib -> dash -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty -rwsr-xr-x 1 root root 63568 Jan 10 2019 su -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch -rwxr-xr-x 1 root root 35424 Mar 1 2019 true -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/12823/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: default-jdk (>= 2:1.9~), debhelper (>= 11~), javahelper, gradle-debian-helper, maven-repo-helper, libfreemarker-java, libjoptsimple-java, liblog4j2-java, libgoogle-gson-java, libmockito-java, testng, libjacoco-java, default-jdk-doc dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on default-jdk (>= 2:1.9~); however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on gradle-debian-helper; however: Package gradle-debian-helper is not installed. pbuilder-satisfydepends-dummy depends on maven-repo-helper; however: Package maven-repo-helper is not installed. pbuilder-satisfydepends-dummy depends on libfreemarker-java; however: Package libfreemarker-java is not installed. pbuilder-satisfydepends-dummy depends on libjoptsimple-java; however: Package libjoptsimple-java is not installed. pbuilder-satisfydepends-dummy depends on liblog4j2-java; however: Package liblog4j2-java is not installed. pbuilder-satisfydepends-dummy depends on libgoogle-gson-java; however: Package libgoogle-gson-java is not installed. pbuilder-satisfydepends-dummy depends on libmockito-java; however: Package libmockito-java is not installed. pbuilder-satisfydepends-dummy depends on testng; however: Package testng is not installed. pbuilder-satisfydepends-dummy depends on libjacoco-java; however: Package libjacoco-java is not installed. pbuilder-satisfydepends-dummy depends on default-jdk-doc; however: Package default-jdk-doc is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: ant{a} ant-optional{a} antlr{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bnd{a} bsdmainutils{a} ca-certificates{a} ca-certificates-java{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-doc{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gnupg-utils{a} gpg{a} gpg-agent{a} gpg-wks-client{a} gpg-wks-server{a} gpgconf{a} gpgsm{a} gradle{a} gradle-debian-helper{a} groff-base{a} groovy{a} intltool-debian{a} ivy{a} java-common{a} java-wrappers{a} javahelper{a} junit4{a} libantlr-java{a} libaopalliance-java{a} libapache-pom-java{a} libarchive-zip-perl{a} libasm-java{a} libasound2{a} libasound2-data{a} libassuan0{a} libatinject-jsr330-api-java{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libb-hooks-op-check-perl{a} libbcel-java{a} libbcpg-java{a} libbcprov-java{a} libbsd0{a} libbsf-java{a} libbsh-java{a} libcdi-api-java{a} libcglib-java{a} libclass-method-modifiers-perl{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-compress-java{a} libcommons-io-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcroco3{a} libcups2{a} libdbus-1-3{a} libdd-plist-java{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdom4j-java{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libel-api-java{a} libelf1{a} libencode-locale-perl{a} libexpat1{a} libfelix-framework-java{a} libfelix-gogo-runtime-java{a} libfelix-resolver-java{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfindbugs-java{a} libfontconfig1{a} libfreemarker-java{a} libfreetype6{a} libgeronimo-annotation-1.3-spec-java{a} libgeronimo-interceptor-3.0-spec-java{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgoogle-gson-java{a} libgradle-core-java{a} libgradle-plugins-java{a} libgraphite2-3{a} libgssapi-krb5-2{a} libguava-java{a} libguice-java{a} libhamcrest-java{a} libharfbuzz0b{a} libhawtjni-runtime-java{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libhttpclient-java{a} libhttpcore-java{a} libicu63{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libjacoco-java{a} libjansi-java{a} libjansi-native-java{a} libjarjar-java{a} libjatl-java{a} libjavaewah-java{a} libjaxen-java{a} libjcifs-java{a} libjcip-annotations-java{a} libjcommander-java{a} libjformatstring-java{a} libjgit-java{a} libjline2-java{a} libjna-java{a} libjna-jni{a} libjoptsimple-java{a} libjpeg62-turbo{a} libjs-jquery{a} libjsch-java{a} libjsoup-java{a} libjsp-api-java{a} libjsr305-java{a} libjzlib-java{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libkryo-java{a} libksba8{a} liblcms2-2{a} libldap-2.4-2{a} libldap-common{a} liblightcouch-java{a} libllvm7{a} liblog4j2-java{a} liblogback-java{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libmaven-parent-java{a} libmaven-resolver-java{a} libmaven-shared-utils-java{a} libmaven3-core-java{a} libminlog-java{a} libmockito-java{a} libmodule-runtime-perl{a} libmoo-perl{a} libmpdec2{a} libnative-platform-java{a} libnative-platform-jni{a} libncurses6{a} libnekohtml-java{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnpth0{a} libnspr4{a} libnss3{a} libobjenesis-java{a} libosgi-annotation-java{a} libosgi-compendium-java{a} libosgi-core-java{a} libparams-classify-perl{a} libpciaccess0{a} libpcsclite1{a} libpipeline1{a} libplexus-cipher-java{a} libplexus-classworlds-java{a} libplexus-component-annotations-java{a} libplexus-container-default-java{a} libplexus-container-default1.5-java{a} libplexus-interpolation-java{a} libplexus-sec-dispatcher-java{a} libplexus-utils2-java{a} libpng16-16{a} libpolyglot-maven-java{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libqdox-java{a} libreadline7{a} libreflectasm-java{a} librhino-java{a} librole-tiny-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libservlet-api-java{a} libservlet3.1-java{a} libsigsegv2{a} libsimple-http-java{a} libsisu-inject-java{a} libsisu-plexus-java{a} libslf4j-java{a} libssl1.1{a} libstrictures-perl{a} libsub-exporter-progressive-perl{a} libsub-quote-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwagon-file-java{a} libwagon-http-java{a} libwagon-provider-api-java{a} libwebsocket-api-java{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxbean-reflect-java{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-sync1{a} libxcb1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxi6{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxpp3-java{a} libxrender1{a} libxshmfence1{a} libxstream-java{a} libxtst6{a} libxxf86vm1{a} libxz-java{a} libyaml-snake-java{a} lsb-base{a} m4{a} man-db{a} maven-repo-helper{a} mime-support{a} netbase{a} openjdk-11-doc{a} openjdk-11-jdk{a} openjdk-11-jdk-headless{a} openjdk-11-jre{a} openjdk-11-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-minimal{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} testng{a} ucf{a} unzip{a} wdiff{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: at curl dbus debian-keyring dput dput-ng dupload equivs fonts-dejavu-extra javascript-common krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libbindex-java libclass-xsaccessor-perl libdata-dump-perl libdistro-info-perl libgit-wrapper-perl libgitlab-api-v4-perl libglib2.0-data libgpars-groovy-java libgpm2 libhtml-form-perl libhtml-format-perl libhttp-daemon-perl liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libsub-name-perl libxt-dev licensecheck lintian lynx python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg shared-mime-info strace wget xdg-user-dirs 0 packages upgraded, 308 newly installed, 0 to remove and 0 not upgraded. Need to get 414 MB of archives. After unpacking 1165 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u6 [1539 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 netbase all 5.6 [19.4 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1d-0+deb10u6 [844 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libnspr4 amd64 2:4.20-1 [112 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 libnss3 amd64 2:3.42.1-1+deb10u3 [1159 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 ca-certificates-java all 20190405 [15.7 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 java-common all 0.71 [14.4 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libavahi-common-data amd64 0.7-4+deb10u1 [122 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libavahi-common3 amd64 0.7-4+deb10u1 [54.4 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libdbus-1-3 amd64 1.12.20-0+deb10u1 [215 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libavahi-client3 amd64 0.7-4+deb10u1 [58.2 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u1 [65.8 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u1 [122 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u1 [369 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u1 [158 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libcups2 amd64 2.2.10-6+deb10u4 [324 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u2 [380 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libasound2-data all 1.1.8-1 [59.6 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libasound2 amd64 1.1.8-1 [361 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libpcsclite1 amd64 1.8.24-1 [58.5 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 openjdk-11-jre-headless amd64 11.0.11+9-1~deb10u1 [37.2 MB] Get: 57 http://deb.debian.org/debian buster/main amd64 default-jre-headless amd64 2:1.11-71 [10.9 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 ant all 1.10.5-2 [2082 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 ant-optional all 1.10.5-2 [379 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 libantlr-java all 2.7.7+dfsg-9.2 [459 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 antlr all 2.7.7+dfsg-9.2 [13.9 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 unzip amd64 6.0-23+deb10u2 [172 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 java-wrappers all 0.3 [10.9 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libhamcrest-java all 1.3-9 [388 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 junit4 all 4.12-8 [292 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 libfelix-framework-java all 4.6.1-2 [543 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 libfelix-gogo-runtime-java all 0.16.2-1 [111 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 libosgi-annotation-java all 6.0.0-2 [3698 B] Get: 75 http://deb.debian.org/debian buster/main amd64 libosgi-core-java all 6.0.0-1 [147 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 libfelix-resolver-java all 1.14.0-1 [177 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 libosgi-compendium-java all 6.0.0-1 [244 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 libslf4j-java all 1.7.25-3 [143 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 libxz-java all 1.8-2 [141 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 libyaml-snake-java all 1.23-1 [270 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 bnd all 3.5.0-4 [7604 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 dctrl-tools amd64 2.24-3 [103 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 94 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 98 http://deb.debian.org/debian buster/main amd64 libglvnd0 amd64 1.1.0-1 [48.6 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get: 102 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get: 103 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get: 104 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get: 105 http://deb.debian.org/debian buster/main amd64 libdrm-common all 2.4.97-1 [13.8 kB] Get: 106 http://deb.debian.org/debian buster/main amd64 libdrm2 amd64 2.4.97-1 [39.7 kB] Get: 107 http://deb.debian.org/debian buster/main amd64 libglapi-mesa amd64 18.3.6-2+deb10u1 [66.3 kB] Get: 108 http://deb.debian.org/debian buster/main amd64 libx11-xcb1 amd64 2:1.6.7-1+deb10u2 [191 kB] Get: 109 http://deb.debian.org/debian buster/main amd64 libxcb-dri2-0 amd64 1.13.1-2 [101 kB] Get: 110 http://deb.debian.org/debian buster/main amd64 libxcb-dri3-0 amd64 1.13.1-2 [100 kB] Get: 111 http://deb.debian.org/debian buster/main amd64 libxcb-glx0 amd64 1.13.1-2 [116 kB] Get: 112 http://deb.debian.org/debian buster/main amd64 libxcb-present0 amd64 1.13.1-2 [99.1 kB] Get: 113 http://deb.debian.org/debian buster/main amd64 libxcb-sync1 amd64 1.13.1-2 [103 kB] Get: 114 http://deb.debian.org/debian buster/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get: 115 http://deb.debian.org/debian buster/main amd64 libxdamage1 amd64 1:1.1.4-3+b3 [14.9 kB] Get: 116 http://deb.debian.org/debian buster/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get: 117 http://deb.debian.org/debian buster/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get: 118 http://deb.debian.org/debian buster/main amd64 libdrm-amdgpu1 amd64 2.4.97-1 [27.3 kB] Get: 119 http://deb.debian.org/debian buster/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get: 120 http://deb.debian.org/debian buster/main amd64 libdrm-intel1 amd64 2.4.97-1 [69.8 kB] Get: 121 http://deb.debian.org/debian buster/main amd64 libdrm-nouveau2 amd64 2.4.97-1 [26.3 kB] Get: 122 http://deb.debian.org/debian buster/main amd64 libdrm-radeon1 amd64 2.4.97-1 [31.1 kB] Get: 123 http://deb.debian.org/debian buster/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get: 124 http://deb.debian.org/debian buster/main amd64 libllvm7 amd64 1:7.0.1-8+deb10u2 [13.1 MB] Get: 125 http://deb.debian.org/debian buster/main amd64 libsensors-config all 1:3.5.0-3 [31.6 kB] Get: 126 http://deb.debian.org/debian buster/main amd64 libsensors5 amd64 1:3.5.0-3 [52.6 kB] Get: 127 http://deb.debian.org/debian buster/main amd64 libgl1-mesa-dri amd64 18.3.6-2+deb10u1 [6685 kB] Get: 128 http://deb.debian.org/debian buster/main amd64 libglx-mesa0 amd64 18.3.6-2+deb10u1 [180 kB] Get: 129 http://deb.debian.org/debian buster/main amd64 libglx0 amd64 1.1.0-1 [30.0 kB] Get: 130 http://deb.debian.org/debian buster/main amd64 libgl1 amd64 1.1.0-1 [91.1 kB] Get: 131 http://deb.debian.org/debian buster/main amd64 libgif7 amd64 5.1.4-3 [43.3 kB] Get: 132 http://deb.debian.org/debian buster/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get: 133 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 134 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get: 135 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get: 136 http://deb.debian.org/debian buster/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get: 137 http://deb.debian.org/debian buster/main amd64 openjdk-11-jre amd64 11.0.11+9-1~deb10u1 [174 kB] Get: 138 http://deb.debian.org/debian buster/main amd64 default-jre amd64 2:1.11-71 [1044 B] Get: 139 http://deb.debian.org/debian buster/main amd64 openjdk-11-jdk-headless amd64 11.0.11+9-1~deb10u1 [220 MB] Get: 140 http://deb.debian.org/debian buster/main amd64 default-jdk-headless amd64 2:1.11-71 [1104 B] Get: 141 http://deb.debian.org/debian buster/main amd64 openjdk-11-jdk amd64 11.0.11+9-1~deb10u1 [2665 kB] Get: 142 http://deb.debian.org/debian buster/main amd64 default-jdk amd64 2:1.11-71 [1056 B] Get: 143 http://deb.debian.org/debian buster/main amd64 openjdk-11-doc all 11.0.11+9-1~deb10u1 [13.5 MB] Get: 144 http://deb.debian.org/debian buster/main amd64 default-jdk-doc amd64 2:1.11-71 [10.9 kB] Get: 145 http://deb.debian.org/debian buster/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get: 146 http://deb.debian.org/debian buster/main amd64 gpgconf amd64 2.2.12-1+deb10u1 [510 kB] Get: 147 http://deb.debian.org/debian buster/main amd64 libksba8 amd64 1.3.5-2 [99.7 kB] Get: 148 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 149 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 150 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 151 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u6 [224 kB] Get: 152 http://deb.debian.org/debian buster/main amd64 libnpth0 amd64 1.6-1 [18.4 kB] Get: 153 http://deb.debian.org/debian buster/main amd64 dirmngr amd64 2.2.12-1+deb10u1 [712 kB] Get: 154 http://deb.debian.org/debian buster/main amd64 gnupg-l10n all 2.2.12-1+deb10u1 [1010 kB] Get: 155 http://deb.debian.org/debian buster/main amd64 gnupg-utils amd64 2.2.12-1+deb10u1 [861 kB] Get: 156 http://deb.debian.org/debian buster/main amd64 gpg amd64 2.2.12-1+deb10u1 [865 kB] Get: 157 http://deb.debian.org/debian buster/main amd64 pinentry-curses amd64 1.1.0-2 [64.5 kB] Get: 158 http://deb.debian.org/debian buster/main amd64 gpg-agent amd64 2.2.12-1+deb10u1 [617 kB] Get: 159 http://deb.debian.org/debian buster/main amd64 gpg-wks-client amd64 2.2.12-1+deb10u1 [485 kB] Get: 160 http://deb.debian.org/debian buster/main amd64 gpg-wks-server amd64 2.2.12-1+deb10u1 [478 kB] Get: 161 http://deb.debian.org/debian buster/main amd64 gpgsm amd64 2.2.12-1+deb10u1 [604 kB] Get: 162 http://deb.debian.org/debian buster/main amd64 gnupg all 2.2.12-1+deb10u1 [715 kB] Get: 163 http://deb.debian.org/debian buster/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get: 164 http://deb.debian.org/debian buster/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get: 165 http://deb.debian.org/debian buster/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get: 166 http://deb.debian.org/debian buster/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get: 167 http://deb.debian.org/debian buster/main amd64 libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get: 168 http://deb.debian.org/debian buster/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get: 169 http://deb.debian.org/debian buster/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get: 170 http://deb.debian.org/debian buster/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b1 [11.4 kB] Get: 171 http://deb.debian.org/debian buster/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get: 172 http://deb.debian.org/debian buster/main amd64 libdevel-callchecker-perl amd64 0.008-1 [15.7 kB] Get: 173 http://deb.debian.org/debian buster/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB] Get: 174 http://deb.debian.org/debian buster/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get: 175 http://deb.debian.org/debian buster/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get: 176 http://deb.debian.org/debian buster/main amd64 librole-tiny-perl all 2.000006-1 [19.4 kB] Get: 177 http://deb.debian.org/debian buster/main amd64 libstrictures-perl all 2.000005-1 [18.3 kB] Get: 178 http://deb.debian.org/debian buster/main amd64 libsub-quote-perl all 2.005001-1 [17.9 kB] Get: 179 http://deb.debian.org/debian buster/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get: 180 http://deb.debian.org/debian buster/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get: 181 http://deb.debian.org/debian buster/main amd64 libtimedate-perl all 2.3000-2+deb10u1 [38.1 kB] Get: 182 http://deb.debian.org/debian buster/main amd64 libhttp-date-perl all 6.02-1 [10.7 kB] Get: 183 http://deb.debian.org/debian buster/main amd64 libfile-listing-perl all 6.04-1 [10.3 kB] Get: 184 http://deb.debian.org/debian buster/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get: 185 http://deb.debian.org/debian buster/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get: 186 http://deb.debian.org/debian buster/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get: 187 http://deb.debian.org/debian buster/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get: 188 http://deb.debian.org/debian buster/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get: 189 http://deb.debian.org/debian buster/main amd64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get: 190 http://deb.debian.org/debian buster/main amd64 libhttp-message-perl all 6.18-1 [77.8 kB] Get: 191 http://deb.debian.org/debian buster/main amd64 libhttp-cookies-perl all 6.04-1 [17.8 kB] Get: 192 http://deb.debian.org/debian buster/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get: 193 http://deb.debian.org/debian buster/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get: 194 http://deb.debian.org/debian buster/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get: 195 http://deb.debian.org/debian buster/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get: 196 http://deb.debian.org/debian buster/main amd64 libnet-http-perl all 6.18-1 [24.5 kB] Get: 197 http://deb.debian.org/debian buster/main amd64 liblwp-protocol-https-perl all 6.07-2 [9242 B] Get: 198 http://deb.debian.org/debian buster/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get: 199 http://deb.debian.org/debian buster/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 200 http://deb.debian.org/debian buster/main amd64 libwww-perl all 6.36-2 [188 kB] Get: 201 http://deb.debian.org/debian buster/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get: 202 http://deb.debian.org/debian buster/main amd64 wdiff amd64 1.2.2-2+b1 [122 kB] Get: 203 http://deb.debian.org/debian buster/main amd64 devscripts amd64 2.19.5+deb10u1 [1046 kB] Get: 204 http://deb.debian.org/debian buster/main amd64 ivy all 2.4.0-5 [1207 kB] Get: 205 http://deb.debian.org/debian buster/main amd64 libasm-java all 7.0-1 [362 kB] Get: 206 http://deb.debian.org/debian buster/main amd64 libbsf-java all 1:2.4.0-8 [76.3 kB] Get: 207 http://deb.debian.org/debian buster/main amd64 libcommons-cli-java all 1.4-1 [55.2 kB] Get: 208 http://deb.debian.org/debian buster/main amd64 libapache-pom-java all 18-1 [4676 B] Get: 209 http://deb.debian.org/debian buster/main amd64 libcommons-parent-java all 43-1 [10.8 kB] Get: 210 http://deb.debian.org/debian buster/main amd64 libcommons-logging-java all 1.2-2 [62.2 kB] Get: 211 http://deb.debian.org/debian buster/main amd64 libhawtjni-runtime-java all 1.16-1 [29.9 kB] Get: 212 http://deb.debian.org/debian buster/main amd64 libjansi-native-java all 1.8-1 [26.0 kB] Get: 213 http://deb.debian.org/debian buster/main amd64 libjansi-java all 1.17.1-1 [63.8 kB] Get: 214 http://deb.debian.org/debian buster/main amd64 libjline2-java all 2.14.6-3 [151 kB] Get: 215 http://deb.debian.org/debian buster/main amd64 libqdox-java all 1.12.1-3 [172 kB] Get: 216 http://deb.debian.org/debian buster/main amd64 libservlet-api-java all 4.0.1-2 [81.0 kB] Get: 217 http://deb.debian.org/debian buster/main amd64 libjsp-api-java all 2.3.4-2+deb10u1 [53.7 kB] Get: 218 http://deb.debian.org/debian buster/main amd64 libel-api-java all 3.0.0-2+deb10u1 [64.9 kB] Get: 219 http://deb.debian.org/debian buster/main amd64 libwebsocket-api-java all 1.1-1+deb10u1 [40.0 kB] Get: 220 http://deb.debian.org/debian buster/main amd64 libservlet3.1-java all 1:4.0.1-2 [9516 B] Get: 221 http://deb.debian.org/debian buster/main amd64 libxpp3-java all 1.1.4c-3 [292 kB] Get: 222 http://deb.debian.org/debian buster/main amd64 libxstream-java all 1.4.11.1-1+deb10u2 [539 kB] Get: 223 http://deb.debian.org/debian buster/main amd64 groovy all 2.4.16-2 [12.9 MB] Get: 224 http://deb.debian.org/debian buster/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get: 225 http://deb.debian.org/debian buster/main amd64 libcommons-collections3-java all 3.2.2-2 [526 kB] Get: 226 http://deb.debian.org/debian buster/main amd64 libcommons-compress-java all 1.18-2+deb10u1 [531 kB] Get: 227 http://deb.debian.org/debian buster/main amd64 libcommons-io-java all 2.6-2 [213 kB] Get: 228 http://deb.debian.org/debian buster/main amd64 libcommons-lang-java all 2.6-8 [273 kB] Get: 229 http://deb.debian.org/debian buster/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get: 230 http://deb.debian.org/debian buster/main amd64 libguava-java all 19.0-1 [2028 kB] Get: 231 http://deb.debian.org/debian buster/main amd64 libcommons-codec-java all 1.11-1 [271 kB] Get: 232 http://deb.debian.org/debian buster/main amd64 libhttpcore-java all 4.4.11-1 [625 kB] Get: 233 http://deb.debian.org/debian buster/main amd64 libhttpclient-java all 4.5.7-1+deb10u1 [721 kB] Get: 234 http://deb.debian.org/debian buster/main amd64 libjarjar-java all 1.4+svn142-10 [192 kB] Get: 235 http://deb.debian.org/debian buster/main amd64 libjcip-annotations-java all 20060626-5 [12.7 kB] Get: 236 http://deb.debian.org/debian buster/main amd64 libjna-jni amd64 4.5.2-1 [54.2 kB] Get: 237 http://deb.debian.org/debian buster/main amd64 libjna-java all 4.5.2-1 [195 kB] Get: 238 http://deb.debian.org/debian buster/main amd64 libjzlib-java all 1.1.3-2 [80.0 kB] Get: 239 http://deb.debian.org/debian buster/main amd64 libjsch-java all 0.1.55-1 [298 kB] Get: 240 http://deb.debian.org/debian buster/main amd64 libminlog-java all 1.3.0-1 [7618 B] Get: 241 http://deb.debian.org/debian buster/main amd64 libobjenesis-java all 3.0.1-2 [52.5 kB] Get: 242 http://deb.debian.org/debian buster/main amd64 libreflectasm-java all 1.05-4 [17.6 kB] Get: 243 http://deb.debian.org/debian buster/main amd64 libkryo-java all 2.20-6 [151 kB] Get: 244 http://deb.debian.org/debian buster/main amd64 liblogback-java all 1:1.2.3-5 [762 kB] Get: 245 http://deb.debian.org/debian buster/main amd64 libnative-platform-jni amd64 0.14-5 [13.0 kB] Get: 246 http://deb.debian.org/debian buster/main amd64 libnative-platform-java all 0.14-5 [71.0 kB] Get: 247 http://deb.debian.org/debian buster/main amd64 libxml-commons-external-java all 1.4.01-3 [240 kB] Get: 248 http://deb.debian.org/debian buster/main amd64 libxml-commons-resolver1.1-java all 1.2-9 [91.6 kB] Get: 249 http://deb.debian.org/debian buster/main amd64 libxerces2-java all 2.12.0-1 [1440 kB] Get: 250 http://deb.debian.org/debian buster/main amd64 libnekohtml-java all 1.9.22-1 [120 kB] Get: 251 http://deb.debian.org/debian buster/main amd64 libxbean-reflect-java all 4.5-8 [133 kB] Get: 252 http://deb.debian.org/debian buster/main amd64 libgradle-core-java all 4.4.1-6 [4242 kB] Get: 253 http://deb.debian.org/debian buster/main amd64 libbcprov-java all 1.60-1 [3258 kB] Get: 254 http://deb.debian.org/debian buster/main amd64 libbcpg-java all 1.60-1 [301 kB] Get: 255 http://deb.debian.org/debian buster/main amd64 libbsh-java all 2.0b4-19 [282 kB] Get: 256 http://deb.debian.org/debian buster/main amd64 libdd-plist-java all 1.20-1 [72.5 kB] Get: 257 http://deb.debian.org/debian buster/main amd64 libjaxen-java all 1.1.6-4 [214 kB] Get: 258 http://deb.debian.org/debian buster/main amd64 libdom4j-java all 2.1.1-2 [310 kB] Get: 259 http://deb.debian.org/debian buster/main amd64 libbcel-java all 6.2-1 [611 kB] Get: 260 http://deb.debian.org/debian buster/main amd64 libjformatstring-java all 0.10~20131207-2 [33.8 kB] Get: 261 http://deb.debian.org/debian buster/main amd64 libfindbugs-java all 3.1.0~preview2-3 [3502 kB] Get: 262 http://deb.debian.org/debian buster/main amd64 libgoogle-gson-java all 2.8.5-3 [225 kB] Get: 263 http://deb.debian.org/debian buster/main amd64 libaopalliance-java all 20070526-6 [9048 B] Get: 264 http://deb.debian.org/debian buster/main amd64 libguice-java all 4.2.1-1 [962 kB] Get: 265 http://deb.debian.org/debian buster/main amd64 libjatl-java all 0.2.3-1 [28.1 kB] Get: 266 http://deb.debian.org/debian buster/main amd64 libjcifs-java all 1.3.19-2 [394 kB] Get: 267 http://deb.debian.org/debian buster/main amd64 libjavaewah-java all 0.7.9-1 [120 kB] Get: 268 http://deb.debian.org/debian buster/main amd64 libjgit-java all 3.7.1-6 [1885 kB] Get: 269 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get: 270 http://deb.debian.org/debian buster/main amd64 libplexus-utils2-java all 3.1.1-1 [249 kB] Get: 271 http://deb.debian.org/debian buster/main amd64 libwagon-provider-api-java all 3.3.1-2 [50.1 kB] Get: 272 http://deb.debian.org/debian buster/main amd64 libmaven-resolver-java all 1.3.1-1 [549 kB] Get: 273 http://deb.debian.org/debian buster/main amd64 libcommons-lang3-java all 3.8-2 [478 kB] Get: 274 http://deb.debian.org/debian buster/main amd64 libgeronimo-annotation-1.3-spec-java all 1.0-1 [10.6 kB] Get: 275 http://deb.debian.org/debian buster/main amd64 libmaven-parent-java all 31-2 [5100 B] Get: 276 http://deb.debian.org/debian buster/main amd64 libmaven-shared-utils-java all 3.3.0-1 [149 kB] Get: 277 http://deb.debian.org/debian buster/main amd64 libplexus-cipher-java all 1.7-3 [15.0 kB] Get: 278 http://deb.debian.org/debian buster/main amd64 libplexus-classworlds-java all 2.6.0-1 [49.4 kB] Get: 279 http://deb.debian.org/debian buster/main amd64 libplexus-component-annotations-java all 1.7.1-7 [7536 B] Get: 280 http://deb.debian.org/debian buster/main amd64 libplexus-interpolation-java all 1.25-1 [76.8 kB] Get: 281 http://deb.debian.org/debian buster/main amd64 libplexus-sec-dispatcher-java all 1.4-4 [28.1 kB] Get: 282 http://deb.debian.org/debian buster/main amd64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] Get: 283 http://deb.debian.org/debian buster/main amd64 libcdi-api-java all 1.2-2 [54.5 kB] Get: 284 http://deb.debian.org/debian buster/main amd64 libsisu-inject-java all 0.3.3-1 [347 kB] Get: 285 http://deb.debian.org/debian buster/main amd64 libsisu-plexus-java all 0.3.3-3 [182 kB] Get: 286 http://deb.debian.org/debian buster/main amd64 libmaven3-core-java all 3.6.0-1 [1465 kB] Get: 287 http://deb.debian.org/debian buster/main amd64 libplexus-container-default-java all 1.7.1-7 [194 kB] Get: 288 http://deb.debian.org/debian buster/main amd64 libplexus-container-default1.5-java all 1.7.1-7 [4336 B] Get: 289 http://deb.debian.org/debian buster/main amd64 libpolyglot-maven-java all 0.8~tobrien+git20120905-9 [74.7 kB] Get: 290 http://deb.debian.org/debian buster/main amd64 librhino-java all 1.7.7.1-1 [1160 kB] Get: 291 http://deb.debian.org/debian buster/main amd64 libsimple-http-java all 4.1.21-1 [205 kB] Get: 292 http://deb.debian.org/debian buster/main amd64 libwagon-file-java all 3.3.1-2 [10.7 kB] Get: 293 http://deb.debian.org/debian buster/main amd64 libjsoup-java all 1.10.2-2 [350 kB] Get: 294 http://deb.debian.org/debian buster/main amd64 libwagon-http-java all 3.3.1-2 [50.5 kB] Get: 295 http://deb.debian.org/debian buster/main amd64 libjcommander-java all 1.71-3 [72.7 kB] Get: 296 http://deb.debian.org/debian buster/main amd64 testng all 6.9.12-4 [795 kB] Get: 297 http://deb.debian.org/debian buster/main amd64 libgradle-plugins-java all 4.4.1-6 [5162 kB] Get: 298 http://deb.debian.org/debian buster/main amd64 gradle all 4.4.1-6 [400 kB] Get: 299 http://deb.debian.org/debian buster/main amd64 maven-repo-helper all 1.9.3 [142 kB] Get: 300 http://deb.debian.org/debian buster/main amd64 gradle-debian-helper all 2.0.2 [25.2 kB] Get: 301 http://deb.debian.org/debian buster/main amd64 javahelper all 0.72.9 [96.4 kB] Get: 302 http://deb.debian.org/debian buster/main amd64 libcglib-java all 3.2.10-1 [288 kB] Get: 303 http://deb.debian.org/debian buster/main amd64 libfreemarker-java all 2.3.23-9 [1228 kB] Get: 304 http://deb.debian.org/debian buster/main amd64 libjacoco-java all 0.8.3-1 [610 kB] Get: 305 http://deb.debian.org/debian buster/main amd64 libjoptsimple-java all 5.0.4-3 [73.0 kB] Get: 306 http://deb.debian.org/debian buster/main amd64 liblightcouch-java all 0.0.6-1 [63.7 kB] Get: 307 http://deb.debian.org/debian buster/main amd64 liblog4j2-java all 2.11.1-2 [1721 kB] Get: 308 http://deb.debian.org/debian buster/main amd64 libmockito-java all 1.10.19-4 [620 kB] Fetched 414 MB in 7s (56.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../1-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Preparing to unpack .../8-libexpat1_2.2.6-2+deb10u1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-2+deb10u1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../9-python3.7-minimal_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u3) ... Setting up libssl1.1:amd64 (1.1.1d-0+deb10u6) ... Setting up libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20090 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.3-1_amd64.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../2-libmpdec2_2.4.2-2_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../4-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package libpython3.7-stdlib:amd64. Preparing to unpack .../5-libpython3.7-stdlib_3.7.3-2+deb10u3_amd64.deb ... Unpacking libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package python3.7. Preparing to unpack .../6-python3.7_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7 (3.7.3-2+deb10u3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../7-libpython3-stdlib_3.7.3-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20551 files and directories currently installed.) Preparing to unpack .../000-python3_3.7.3-1_amd64.deb ... Unpacking python3 (3.7.3-1) ... Selecting previously unselected package netbase. Preparing to unpack .../001-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../004-libmagic1_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../006-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package ucf. Preparing to unpack .../007-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../008-openssl_1.1.1d-0+deb10u6_amd64.deb ... Unpacking openssl (1.1.1d-0+deb10u6) ... 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Setting up libdrm2:amd64 (2.4.97-1) ... Setting up dwz (0.12-3) ... Setting up libjansi-native-java (1.8-1) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up gpgconf (2.2.12-1+deb10u1) ... Setting up libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libwagon-file-java (3.3.1-2) ... Setting up libcommons-codec-java (1.11-1) ... Setting up libavahi-client3:amd64 (0.7-4+deb10u1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up libplexus-container-default-java (1.7.1-7) ... Setting up gpg (2.2.12-1+deb10u1) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up libhttp-message-perl (6.18-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.97-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:amd64 (1.13.1-2) ... Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libdrm-nouveau2:amd64 (2.4.97-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libfindbugs-java (3.1.0~preview2-3) ... Setting up gpg-agent (2.2.12-1+deb10u1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libcommons-compress-java (1.18-2+deb10u1) ... Setting up libhttp-cookies-perl (6.04-1) ... Setting up libcommons-io-java (2.6-2) ... Setting up libdrm-radeon1:amd64 (2.4.97-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl (0.015-1+b1) ... Setting up gpgsm (2.2.12-1+deb10u1) ... Setting up libdrm-intel1:amd64 (2.4.97-1) ... Setting up libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libguice-java (4.2.1-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dirmngr (2.2.12-1+deb10u1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libjansi-java (1.17.1-1) ... Setting up libplexus-container-default1.5-java (1.7.1-7) ... Setting up gpg-wks-server (2.2.12-1+deb10u1) ... Setting up libcups2:amd64 (2.2.10-6+deb10u4) ... Setting up libhttpclient-java (4.5.7-1+deb10u1) ... Setting up liblightcouch-java (0.0.6-1) ... Setting up libwagon-http-java (3.3.1-2) ... Setting up libmaven-shared-utils-java (3.3.0-1) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up libjline2-java (2.14.6-3) ... Setting up libjgit-java (3.7.1-6) ... Setting up libxdamage1:amd64 (1:1.1.4-3+b3) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up gpg-wks-client (2.2.12-1+deb10u1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up libmoo-perl (2.003004-2) ... Setting up po-debconf (1.0.21) ... Setting up liblog4j2-java (2.11.1-2) ... Setting up libsisu-inject-java (0.3.3-1) ... Setting up libsisu-plexus-java (0.3.3-3) ... Setting up gnupg (2.2.12-1+deb10u1) ... Setting up libglx-mesa0:amd64 (18.3.6-2+deb10u1) ... Setting up libglx0:amd64 (1.1.0-1) ... Setting up libmaven3-core-java (3.6.0-1) ... Setting up libgl1:amd64 (1.1.0-1) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up default-jre-headless (2:1.11-71) ... Setting up libwww-perl (6.36-2) ... Setting up openjdk-11-jre-headless:amd64 (11.0.11+9-1~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jre:amd64 (11.0.11+9-1~deb10u1) ... Setting up maven-repo-helper (1.9.3) ... Setting up openjdk-11-jdk-headless:amd64 (11.0.11+9-1~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jaotc to provide /usr/bin/jaotc (jaotc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre (2:1.11-71) ... Setting up antlr (2.7.7+dfsg-9.2) ... Setting up dh-autoreconf (19) ... Setting up default-jdk-headless (2:1.11-71) ... Setting up devscripts (2.19.5+deb10u1) ... Setting up ivy (2.4.0-5) ... Setting up ant (1.10.5-2) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up openjdk-11-jdk:amd64 (11.0.11+9-1~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up ca-certificates-java (20190405) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Taiwan_GRCA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up junit4 (4.12-8) ... Setting up groovy (2.4.16-2) ... update-alternatives: using /usr/share/groovy/bin/groovy to provide /usr/bin/groovy (groovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovyc to provide /usr/bin/groovyc (groovyc) in auto mode update-alternatives: using /usr/share/groovy/bin/grape to provide /usr/bin/grape (grape) in auto mode update-alternatives: using /usr/share/groovy/bin/startGroovy to provide /usr/bin/startGroovy (startGroovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovysh to provide /usr/bin/groovysh (groovysh) in auto mode update-alternatives: using /usr/share/groovy/bin/java2groovy to provide /usr/bin/java2groovy (java2groovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovyConsole to provide /usr/bin/groovyConsole (groovyConsole) in auto mode update-alternatives: using /usr/share/groovy/bin/groovydoc to provide /usr/bin/groovydoc (groovydoc) in auto mode Setting up debhelper (12.1.1) ... Setting up default-jdk (2:1.11-71) ... Setting up ant-optional (1.10.5-2) ... Setting up bnd (3.5.0-4) ... Setting up libgradle-core-java (4.4.1-6) ... Setting up libgradle-plugins-java (4.4.1-6) ... Setting up javahelper (0.72.9) ... Setting up gradle (4.4.1-6) ... Setting up gradle-debian-helper (2.0.2) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/barclay-2.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package barclay dpkg-buildpackage: info: source version 2.1.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Olivier Sallou dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --buildsystem=gradle --with javahelper,jh_maven_repo_helper dh_auto_clean -O--buildsystem=gradle sh -c "find . -wholename .*build/tmp | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" sh -c "find . -wholename .*build/debian | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" rm -Rf /build/barclay-2.1.0/.gradle /build/barclay-2.1.0/buildSrc/.gradle .m2 dh_autoreconf_clean -O--buildsystem=gradle jh_clean -O--buildsystem=gradle rm -fr debian/_jh_manifest* debian/_jh_build* rm -fr debian/.eclipse-build rm -f debian/orbitdeps.debhelper mh_clean -O--buildsystem=gradle debian/rules override_dh_clean make[1]: Entering directory '/build/barclay-2.1.0' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libbarclay-java.substvars debian/files rm -fr -- debian/libbarclay-java/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f debian/bd-temp-substvars rm -f debian/bd.substvars make[1]: Leaving directory '/build/barclay-2.1.0' debian/rules build dh build --buildsystem=gradle --with javahelper,jh_maven_repo_helper dh_update_autotools_config -O--buildsystem=gradle dh_autoreconf -O--buildsystem=gradle dh_auto_configure -O--buildsystem=gradle jh_linkjars -O--buildsystem=gradle debian/rules override_dh_auto_build make[1]: Entering directory '/build/barclay-2.1.0' dh_auto_build -- jar mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=barclay -Dfile.encoding=UTF-8 --parallel --max-workers=15 jar Initialized native services in: /build/barclay-2.1.0/.gradle/native To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/barclay-2.1.0/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-11-openjdk-amd64/bin/java -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' An attempt to start the daemon took 5.376 secs. The client will now receive all logging from the daemon (pid: 21062). The daemon log file: /build/barclay-2.1.0/.gradle/daemon/4.4.1/daemon-21062.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 15 worker leases. Creating new cache for fileHashes, path /build/barclay-2.1.0/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@756dc1f9 Creating new cache for resourceHashesCache, path /build/barclay-2.1.0/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@756dc1f9 Creating new cache for fileHashes, path /build/barclay-2.1.0/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@70cf3c57 Starting Build Compiling initialization script '/build/barclay-2.1.0/.gradle/init.d/init.gradle' using SubsetScriptTransformer. Creating new cache for metadata-1.1/results, path /build/barclay-2.1.0/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@7503c747 Compiling initialization script '/build/barclay-2.1.0/.gradle/init.d/init.gradle' using BuildScriptTransformer. Settings evaluated using settings file '/build/barclay-2.1.0/settings.gradle'. Settings file not found (/build/barclay-2.1.0/settings.gradle) Root project name not defined in settings.gradle, defaulting to 'barclay' instead of the name of the root directory 'barclay-2.1.0' Projects loaded. Root project using build file '/build/barclay-2.1.0/build.gradle'. Included projects: [root project 'barclay'] Keep-alive timer started Adding Debian repository to project 'barclay' Parallel execution is an incubating feature. Evaluating root project 'barclay' using build file '/build/barclay-2.1.0/build.gradle'. Compiling build file '/build/barclay-2.1.0/build.gradle' using SubsetScriptTransformer. Compiling build file '/build/barclay-2.1.0/build.gradle' using BuildScriptTransformer. Starting process 'command 'dpkg-parsechangelog''. Working directory: /build/barclay-2.1.0 Command: dpkg-parsechangelog -S Version Successfully started process 'command 'dpkg-parsechangelog'' Adding Maven pom generation to project 'barclay' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : Creating new cache for annotation-processors, path /build/barclay-2.1.0/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@48eef256 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] Creating new cache for resourceHashesCache, path /build/barclay-2.1.0/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@70cf3c57 Creating new cache for taskHistory, path /build/barclay-2.1.0/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@25f28ebf Creating new cache for outputFiles, path /build/barclay-2.1.0/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@6bcdd79b :compileJava (Thread[Task worker for ':',5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.038 secs. Creating new cache for metadata-2.36/module-metadata, path /build/barclay-2.1.0/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@25c7f2ea Loading the Maven rules... Replacing net.sf.jopt-simple:jopt-simple:jar:5.0.3 -> net.sf.jopt-simple:jopt-simple:jar:debian Replacing org.apache.commons:commons-lang3:jar:3.4 -> org.apache.commons:commons-lang3:jar:debian Passing through org.apache.commons:commons-parent:jar:debian Passing through org.apache:apache:jar:debian Replacing org.apache.logging.log4j:log4j-api:jar:2.3 -> org.apache.logging.log4j:log4j-api:jar:debian Passing through org.apache.logging.log4j:log4j:jar:debian Replacing org.apache.logging.log4j:log4j-core:jar:2.3 -> org.apache.logging.log4j:log4j-core:jar:debian Replacing org.freemarker:freemarker:jar:2.3.23 -> org.freemarker:freemarker:jar:debian Replacing com.google.code.gson:gson:jar:2.2.2 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian Up-to-date check for task ':compileJava' took 3.589 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/utils/Utils.java:3: warning: [deprecation] WordUtils in org.apache.commons.lang3.text has been deprecated import org.apache.commons.lang3.text.WordUtils; ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:5: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.ClassDoc; ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:6: warning: [removal] RootDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.RootDoc; ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocWorkUnit.java:3: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.ClassDoc; ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocletUtils.java:3: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.FieldDoc; ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocletUtils.java:4: warning: [removal] PackageDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.PackageDoc; ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocletUtils.java:5: warning: [removal] ProgramElementDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.ProgramElementDoc; ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:3: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.ClassDoc; ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:4: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.FieldDoc; ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/BashTabCompletionDoclet.java:3: warning: [removal] RootDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.RootDoc; ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/utils/Utils.java:162: warning: [deprecation] WordUtils in org.apache.commons.lang3.text has been deprecated .map(line -> WordUtils.wrap(line, width)) ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:94: warning: [removal] RootDoc in com.sun.javadoc has been deprecated and marked for removal private RootDoc rootDoc; // The javadoc root doc ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:105: warning: [removal] RootDoc in com.sun.javadoc has been deprecated and marked for removal public static boolean start(final RootDoc rootDoc) throws IOException { ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:139: warning: [removal] RootDoc in com.sun.javadoc has been deprecated and marked for removal protected boolean startProcessDocs(final RootDoc rootDoc) throws IOException { ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:256: warning: [removal] RootDoc in com.sun.javadoc has been deprecated and marked for removal private void processDocs(final RootDoc rootDoc) { ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:294: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal for (final ClassDoc classDoc : rootDoc.classes()) { ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:316: warning: [removal] RootDoc in com.sun.javadoc has been deprecated and marked for removal public RootDoc getRootDoc() { return rootDoc; } ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:361: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal public boolean includeInDocs(final DocumentedFeature documentedFeature, final ClassDoc classDoc, final Class clazz) { ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:412: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal final ClassDoc classDoc, ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:443: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal private Class getClassForClassDoc(final ClassDoc doc) { ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:570: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal public ClassDoc getClassDocForClass(final Class clazz) { ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocWorkUnit.java:25: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal private final ClassDoc classDoc; // javadoc documentation for clazz ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocWorkUnit.java:50: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal final ClassDoc classDoc, ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocWorkUnit.java:112: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal public ClassDoc getClassDoc() { return classDoc; } ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocWorkUnit.java:187: warning: [deprecation] newInstance() in Class has been deprecated return commandLineProperties.programGroup().newInstance(); ^ where T is a type-variable: T extends Object declared in class Class /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocletUtils.java:16: warning: [removal] ProgramElementDoc in com.sun.javadoc has been deprecated and marked for removal protected static Class getClassForDoc(ProgramElementDoc doc) throws ClassNotFoundException { ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocletUtils.java:20: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal protected static Field getFieldForFieldDoc(FieldDoc fieldDoc) { ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocletUtils.java:35: warning: [removal] ProgramElementDoc in com.sun.javadoc has been deprecated and marked for removal protected static String getClassName(ProgramElementDoc doc, boolean binaryName) { ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocletUtils.java:36: warning: [removal] PackageDoc in com.sun.javadoc has been deprecated and marked for removal PackageDoc containingPackage = doc.containingPackage(); ^ warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:195: warning: [deprecation] newInstance() in Class has been deprecated final Object argumentContainer = workUnit.getClazz().newInstance(); ^ where T is a type-variable: T extends Object declared in class Class warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:378: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal FieldDoc fieldDoc = getFieldDocForCommandLineArgument(currentWorkUnit, argDef); ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:423: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal private FieldDoc getFieldDocForCommandLineArgument( ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:429: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal final ClassDoc declaringClassDoc = getDoclet().getRootDoc().classNamed(declaringClassTypeName); ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:439: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal final FieldDoc fieldDoc = getFieldDoc(declaringClassDoc, argDef.field.getName()); ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:645: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal private FieldDoc getFieldDoc(final ClassDoc classDoc, final String argumentFieldName) { ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:645: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal private FieldDoc getFieldDoc(final ClassDoc classDoc, final String argumentFieldName) { ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:646: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal for (final FieldDoc fieldDoc : classDoc.fields(false)) { ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:662: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal final ClassDoc typeDoc = getDoclet().getRootDoc().classNamed(fieldDoc.type().qualifiedTypeName()); ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:667: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal FieldDoc result = getFieldDoc(typeDoc, argumentFieldName); ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:746: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal protected Map docForArgument(final FieldDoc fieldDoc, final CommandLineArgumentParser.ArgumentDefinition def) { ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:800: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal final ClassDoc doc = this.getDoclet().getClassDocForClass(enumClass); ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:807: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal for (final FieldDoc fieldDoc : doc.fields(false)) { ^ /build/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/BashTabCompletionDoclet.java:257: warning: [removal] RootDoc in com.sun.javadoc has been deprecated and marked for removal public static boolean start(RootDoc rootDoc) { ^ 48 warnings :compileJava (Thread[Task worker for ':',5,main]) completed. Took 12.28 secs. :processResources (Thread[Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. Up-to-date check for task ':processResources' took 0.064 secs. It is not up-to-date because: No history is available. :processResources (Thread[Task worker for ':',5,main]) completed. Took 0.209 secs. :classes (Thread[Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. :debianMavenPom (Thread[Task worker for ':',5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':debianMavenPom' took 0.012 secs. It is not up-to-date because: No history is available. Generating pom file /build/barclay-2.1.0/build/debian/barclay.pom :debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.272 secs. :jar (Thread[Task worker for ':',5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. Up-to-date check for task ':jar' took 0.051 secs. It is not up-to-date because: No history is available. :jar (Thread[Task worker for ':',5,main]) completed. Took 0.238 secs. BUILD SUCCESSFUL in 39s 4 actionable tasks: 4 executed make[1]: Leaving directory '/build/barclay-2.1.0' jh_build -O--buildsystem=gradle rm -f debian/libbarclay-java.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/barclay-2.1.0' # Tests do not work with locales with a different decimal separator # (for example ',') env LC_ALL=C \ dh_auto_build -- test mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=barclay -Dfile.encoding=UTF-8 --parallel --max-workers=15 test Initialized native services in: /build/barclay-2.1.0/.gradle/native To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/barclay-2.1.0/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-11-openjdk-amd64/bin/java -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' An attempt to start the daemon took 5.312 secs. The client will now receive all logging from the daemon (pid: 40967). The daemon log file: /build/barclay-2.1.0/.gradle/daemon/4.4.1/daemon-40967.out.log Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Daemon will be stopped at the end of the build stopping after processing Using 15 worker leases. Creating new cache for fileHashes, path /build/barclay-2.1.0/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@3ad46c0d Creating new cache for resourceHashesCache, path /build/barclay-2.1.0/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@3ad46c0d Creating new cache for fileHashes, path /build/barclay-2.1.0/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@21ac4da4 Starting Build Creating new cache for metadata-1.1/results, path /build/barclay-2.1.0/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@44f10df2 Settings evaluated using settings file '/build/barclay-2.1.0/settings.gradle'. Settings file not found (/build/barclay-2.1.0/settings.gradle) Root project name not defined in settings.gradle, defaulting to 'barclay' instead of the name of the root directory 'barclay-2.1.0' Projects loaded. Root project using build file '/build/barclay-2.1.0/build.gradle'. Included projects: [root project 'barclay'] Keep-alive timer started Adding Debian repository to project 'barclay' Parallel execution is an incubating feature. Evaluating root project 'barclay' using build file '/build/barclay-2.1.0/build.gradle'. Starting process 'command 'dpkg-parsechangelog''. Working directory: /build/barclay-2.1.0 Command: dpkg-parsechangelog -S Version Successfully started process 'command 'dpkg-parsechangelog'' Adding Maven pom generation to project 'barclay' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : Creating new cache for annotation-processors, path /build/barclay-2.1.0/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@3873b09d Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] Creating new cache for resourceHashesCache, path /build/barclay-2.1.0/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@21ac4da4 Creating new cache for taskHistory, path /build/barclay-2.1.0/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@5625252c Creating new cache for outputFiles, path /build/barclay-2.1.0/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@2ab468f1 :compileJava (Thread[Task worker for ':',5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.025 secs. Creating new cache for metadata-2.36/module-metadata, path /build/barclay-2.1.0/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@4b19a167 Loading the Maven rules... Replacing net.sf.jopt-simple:jopt-simple:jar:5.0.3 -> net.sf.jopt-simple:jopt-simple:jar:debian Replacing org.apache.commons:commons-lang3:jar:3.4 -> org.apache.commons:commons-lang3:jar:debian Passing through org.apache.commons:commons-parent:jar:debian Passing through org.apache:apache:jar:debian Replacing org.apache.logging.log4j:log4j-api:jar:2.3 -> org.apache.logging.log4j:log4j-api:jar:debian Passing through org.apache.logging.log4j:log4j:jar:debian Replacing org.apache.logging.log4j:log4j-core:jar:2.3 -> org.apache.logging.log4j:log4j-core:jar:debian Replacing org.freemarker:freemarker:jar:2.3.23 -> org.freemarker:freemarker:jar:debian Replacing com.google.code.gson:gson:jar:2.2.2 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian Skipping task ':compileJava' as it is up-to-date (took 2.296 secs). :compileJava UP-TO-DATE :compileJava (Thread[Task worker for ':',5,main]) completed. Took 2.922 secs. :processResources (Thread[Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. Skipping task ':processResources' as it is up-to-date (took 0.097 secs). :processResources UP-TO-DATE :processResources (Thread[Task worker for ':',5,main]) completed. Took 0.12 secs. :classes (Thread[Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE :classes (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. :compileTestJava (Thread[Task worker for ':',5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. Passing through org.testng:testng:jar:debian Replacing org.mockito:mockito-core:jar:2.10.0 -> org.mockito:mockito-core:jar:debian Passing through org.beanshell:bsh:jar:debian Passing through com.beust:jcommander:jar:debian Passing through org.hamcrest:hamcrest-core:jar:debian Passing through org.objenesis:objenesis:jar:debian Passing through org.objenesis:objenesis-parent:jar:debian Passing through cglib:cglib:jar:debian Passing through cglib:cglib-parent:jar:debian Passing through org.ow2.asm:asm:jar:debian Up-to-date check for task ':compileTestJava' took 2.679 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. Compiling with JDK Java compiler API. /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandlerUnitTest.java:3: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.ClassDoc; ^ /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandlerUnitTest.java:4: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.FieldDoc; ^ /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocWorkUnitTest.java:3: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.ClassDoc; ^ /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:3: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.ClassDoc; ^ /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:4: warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.Tag; ^ /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/testdoclets/TestDoclet.java:3: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.ClassDoc; ^ /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/testdoclets/TestDoclet.java:4: warning: [removal] RootDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.RootDoc; ^ /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:21: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal public static ClassDoc mockClassDoc(final String javadocText, ^ /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:24: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal final ClassDoc mockedClassDoc = Mockito.mock(ClassDoc.class); ^ /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:24: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal final ClassDoc mockedClassDoc = Mockito.mock(ClassDoc.class); ^ /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:26: warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal final Tag[] javadoc = Arrays.stream(javadocText.split("\n")) ^ /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:28: warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal .toArray(Tag[]::new); ^ /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:30: warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal final Tag[] inline = inlineTags.entrySet().stream() ^ /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:32: warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal .toArray(Tag[]::new); ^ /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:37: warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal private static Tag mockTag(final String name, final String text) { ^ /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:38: warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal final Tag tag = Mockito.mock(Tag.class); ^ /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:38: warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal final Tag tag = Mockito.mock(Tag.class); ^ /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/testdoclets/TestDoclet.java:18: warning: [removal] RootDoc in com.sun.javadoc has been deprecated and marked for removal public static boolean start(RootDoc rootDoc) { ^ /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/testdoclets/TestDoclet.java:29: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal final ClassDoc classDoc, ^ /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocumentationGenerationIntegrationTest.java:241: warning: [removal] Main in com.sun.tools.javadoc has been deprecated and marked for removal com.sun.tools.javadoc.Main.execute( ^ /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java:117: warning: [deprecation] newInstance() in Class has been deprecated testPluginBase = (TestPluginBase) pluggableClass.newInstance(); ^ where T is a type-variable: T extends Object declared in class Class /build/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java:393: warning: [deprecation] newInstance() in Class has been deprecated final TestPluginArgCollisionBase plugin = (TestPluginArgCollisionBase) pluggableClass.newInstance(); ^ where T is a type-variable: T extends Object declared in class Class 22 warnings :compileTestJava (Thread[Task worker for ':',5,main]) completed. Took 10.757 secs. :processTestResources (Thread[Task worker for ':',5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. Up-to-date check for task ':processTestResources' took 0.082 secs. It is not up-to-date because: No history is available. :processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.183 secs. :testClasses (Thread[Task worker for ':',5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. :testClasses (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. :test (Thread[Task worker for ':',5,main]) started. :test Putting task artifact state for task ':test' into context took 0.01 secs. Up-to-date check for task ':test' took 1.031 secs. It is not up-to-date because: Task.upToDateWhen is false. Starting process 'Gradle Test Executor 1'. Working directory: /build/barclay-2.1.0 Command: /usr/lib/jvm/java-11-openjdk-amd64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath15362842181617735062txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. Running Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: ERROR StatusLogger No Log4j 2 configuration file found. Using default configuration (logging only errors to the console), or user programmatically provided configurations. Set system property 'log4j2.debug' to show Log4j 2 internal initialization logging. See https://logging.apache.org/log4j/2.x/manual/configuration.html for instructions on how to configure Log4j 2 Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests.testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false) STANDARD_ERROR ERROR StatusLogger No Log4j 2 configuration file found. Using default configuration (logging only errors to the console), or user programmatically provided configurations. Set system property 'log4j2.debug' to show Log4j 2 internal initialization logging. See https://logging.apache.org/log4j/2.x/manual/configuration.html for instructions on how to configure Log4j 2 Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: ERROR StatusLogger Could not determine local host name ERROR StatusLogger Could not determine local host name Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: java.net.UnknownHostException: i-capture-the-hostname: i-capture-the-hostname: Temporary failure in name resolution java.net.UnknownHostException: i-capture-the-hostname: i-capture-the-hostname: Temporary failure in name resolution Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/java.net.InetAddress.getLocalHost(InetAddress.java:1646) at java.base/java.net.InetAddress.getLocalHost(InetAddress.java:1646) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.apache.logging.log4j.core.util.NetUtils.getLocalHostname(NetUtils.java:53) at org.apache.logging.log4j.core.util.NetUtils.getLocalHostname(NetUtils.java:53) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.apache.logging.log4j.core.LoggerContext.setConfiguration(LoggerContext.java:541) at org.apache.logging.log4j.core.LoggerContext.setConfiguration(LoggerContext.java:541) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.apache.logging.log4j.core.LoggerContext.reconfigure(LoggerContext.java:619) at org.apache.logging.log4j.core.LoggerContext.reconfigure(LoggerContext.java:619) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.apache.logging.log4j.core.LoggerContext.reconfigure(LoggerContext.java:636) at org.apache.logging.log4j.core.LoggerContext.reconfigure(LoggerContext.java:636) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.apache.logging.log4j.core.LoggerContext.start(LoggerContext.java:231) at org.apache.logging.log4j.core.LoggerContext.start(LoggerContext.java:231) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.apache.logging.log4j.core.impl.Log4jContextFactory.getContext(Log4jContextFactory.java:153) at org.apache.logging.log4j.core.impl.Log4jContextFactory.getContext(Log4jContextFactory.java:153) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.apache.logging.log4j.core.impl.Log4jContextFactory.getContext(Log4jContextFactory.java:45) at org.apache.logging.log4j.core.impl.Log4jContextFactory.getContext(Log4jContextFactory.java:45) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.apache.logging.log4j.LogManager.getContext(LogManager.java:194) at org.apache.logging.log4j.LogManager.getContext(LogManager.java:194) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.apache.logging.log4j.LogManager.getLogger(LogManager.java:581) at org.apache.logging.log4j.LogManager.getLogger(LogManager.java:581) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.apache.logging.log4j.LogManager.getLogger(LogManager.java:567) at org.apache.logging.log4j.LogManager.getLogger(LogManager.java:567) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.broadinstitute.barclay.argparser.CommandLineArgumentParser.(CommandLineArgumentParser.java:68) at org.broadinstitute.barclay.argparser.CommandLineArgumentParser.(CommandLineArgumentParser.java:68) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests.testCollectionFromExpansionFile(CollectionArgumentUnitTests.java:284) at org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests.testCollectionFromExpansionFile(CollectionArgumentUnitTests.java:284) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/java.lang.reflect.Method.invoke(Method.java:566) at java.base/java.lang.reflect.Method.invoke(Method.java:566) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:100) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:100) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.testng.internal.Invoker.invokeMethod(Invoker.java:646) at org.testng.internal.Invoker.invokeMethod(Invoker.java:646) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:811) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:811) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1129) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1129) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:129) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:129) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.testng.TestRunner.privateRun(TestRunner.java:746) at org.testng.TestRunner.privateRun(TestRunner.java:746) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.testng.TestRunner.run(TestRunner.java:600) at org.testng.TestRunner.run(TestRunner.java:600) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.testng.SuiteRunner.runTest(SuiteRunner.java:366) at org.testng.SuiteRunner.runTest(SuiteRunner.java:366) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:361) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:361) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.testng.SuiteRunner.privateRun(SuiteRunner.java:319) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:319) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.testng.SuiteRunner.run(SuiteRunner.java:268) at org.testng.SuiteRunner.run(SuiteRunner.java:268) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.testng.TestNG.runSuitesSequentially(TestNG.java:1264) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1264) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.testng.TestNG.runSuitesLocally(TestNG.java:1189) at org.testng.TestNG.runSuitesLocally(TestNG.java:1189) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.testng.TestNG.runSuites(TestNG.java:1104) at org.testng.TestNG.runSuites(TestNG.java:1104) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.testng.TestNG.run(TestNG.java:1076) at org.testng.TestNG.run(TestNG.java:1076) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:129) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:129) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:88) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:88) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:61) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:61) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/java.lang.reflect.Method.invoke(Method.java:566) at java.base/java.lang.reflect.Method.invoke(Method.java:566) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:32) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:32) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:93) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:93) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at com.sun.proxy.$Proxy3.stop(Unknown Source) at com.sun.proxy.$Proxy3.stop(Unknown Source) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.gradle.api.internal.tasks.testing.worker.TestWorker.stop(TestWorker.java:119) at org.gradle.api.internal.tasks.testing.worker.TestWorker.stop(TestWorker.java:119) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/java.lang.reflect.Method.invoke(Method.java:566) at java.base/java.lang.reflect.Method.invoke(Method.java:566) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:146) at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:146) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:128) at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:128) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.gradle.internal.remote.internal.hub.MessageHub$Handler.run(MessageHub.java:404) at org.gradle.internal.remote.internal.hub.MessageHub$Handler.run(MessageHub.java:404) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63) at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46) at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/java.lang.Thread.run(Thread.java:829) at java.base/java.lang.Thread.run(Thread.java:829) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: Caused by: java.net.UnknownHostException: i-capture-the-hostname: Temporary failure in name resolution Caused by: java.net.UnknownHostException: i-capture-the-hostname: Temporary failure in name resolution Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/java.net.Inet6AddressImpl.lookupAllHostAddr(Native Method) at java.base/java.net.Inet6AddressImpl.lookupAllHostAddr(Native Method) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/java.net.InetAddress$PlatformNameService.lookupAllHostAddr(InetAddress.java:929) at java.base/java.net.InetAddress$PlatformNameService.lookupAllHostAddr(InetAddress.java:929) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/java.net.InetAddress.getAddressesFromNameService(InetAddress.java:1519) at java.base/java.net.InetAddress.getAddressesFromNameService(InetAddress.java:1519) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/java.net.InetAddress$NameServiceAddresses.get(InetAddress.java:848) at java.base/java.net.InetAddress$NameServiceAddresses.get(InetAddress.java:848) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/java.net.InetAddress.getAllByName0(InetAddress.java:1509) at java.base/java.net.InetAddress.getAllByName0(InetAddress.java:1509) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: at java.base/java.net.InetAddress.getLocalHost(InetAddress.java:1641) at java.base/java.net.InetAddress.getLocalHost(InetAddress.java:1641) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6930a45e, [], /tmp/enabledExpansion2477160174215355941.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@cebda9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: ... 62 more ... 62 more Running Test: Test method testCollectionFromExpansionFile[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@78630a66, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion6160563664034078579.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@36e2ec2d, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionFromExpansionFile[2](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6eb69b0c, [], /tmp/enabledExpansion15956268795853929918.list, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@525ee395, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionFromExpansionFile[3](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@4be37f2, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion5955309357455119951.list, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@522ffecc, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionFromExpansionFile[4](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@2d0367f7, [], /tmp/enabledExpansion2392648444245826809.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@74501db4, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionFromExpansionFile[5](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@168f5891, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion358227465436991833.args, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@3640254d, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionFromExpansionFile[6](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@17c0dfa5, [], /tmp/enabledExpansion15782529225480656194.list, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@5fb164e4, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionFromExpansionFile[7](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@39c20bfd, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion9926641099757107065.list, [Ljava.lang.String;@7b42f35e, [Ljava.lang.String;@5cf16d34, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionFromListFileMixed[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@76dd4eab, [], [Ljava.lang.String;@6e7aa93c, [Ljava.lang.String;@7d978c52, [Ljava.lang.String;@3b4fc676, [Ljava.lang.String;@27fb7fa2)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionFromListFileMixed[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@60fa276b, [APPEND_TO_COLLECTIONS], [Ljava.lang.String;@6e7aa93c, [Ljava.lang.String;@7d978c52, [Ljava.lang.String;@28018a7, [Ljava.lang.String;@6d435ecd)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionThatCannotBeAutoInitialized(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testGetCommandLineWithExpansionFile(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testInitializedCollections[0]([Ljava.lang.String;@3ac63176, [APPEND_TO_COLLECTIONS], [foo, bar, baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testInitializedCollections[1]([Ljava.lang.String;@3ac63176, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testInitializedCollections[2]([Ljava.lang.String;@145c1a58, [APPEND_TO_COLLECTIONS], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testInitializedCollections[3]([Ljava.lang.String;@145c1a58, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testInitializedCollections[4]([Ljava.lang.String;@2ff69a35, [APPEND_TO_COLLECTIONS], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testInitializedCollections[5]([Ljava.lang.String;@2ff69a35, [], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testInitializedCollections[6]([Ljava.lang.String;@18f8656b, [APPEND_TO_COLLECTIONS], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testInitializedCollections[7]([Ljava.lang.String;@1b54e8ef, [[]], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testRejectNonCollectionFileExpansionSuppression(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testUninitializedCollections[0]([Ljava.lang.String;@5fe32e5e, [], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testUninitializedCollections[1]([Ljava.lang.String;@5fe32e5e, [APPEND_TO_COLLECTIONS], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method passingMutexCheck[0](simple mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@27a92b9e, [Ljava.lang.String;@6789ed0c)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method passingMutexCheck[1](collection mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@2da9043e, [Ljava.lang.String;@566504f0)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method passingMutexCheck[2](collection multiple mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@3ffb1894, [Ljava.lang.String;@19a08273)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method passingMutexCheck[3](scalar mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@2777057e, [Ljava.lang.String;@2909abfe)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testAbbreviationsAreRejected(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testAdvancedArguments(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentCollection(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentNameCollision(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentUseClash(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentsFile(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testBadFieldCausesException(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testBadValue(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testBetaExperimentalMutex(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testBetaFeatureUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testCombinationOfFlags(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testDefault(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testExperimentalFeatureUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFailingMutex[0](no args, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@4ae42a18, [Ljava.lang.String;@69312a3d)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFailingMutex[1](1 of group required, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@438c3fb3, [Ljava.lang.String;@464feefb)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFailingMutex[2](mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@4fe33ef2, [Ljava.lang.String;@7e93ba2b)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFailingMutex[3](mega mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@61cd3050, [Ljava.lang.String;@5b1c7e54)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFailingMutex[4](collection and scalar mutex mix, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@1bc064cb, [Ljava.lang.String;@4b49a0b4)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagNoArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagWithPositionalFollowing(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagsWithArguments(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testGatherArgumentValuesOfType[0]([--childSuperTypeTarget, childSuperTypeTargetValue, --childSubTypeTarget, childSubTypeTargetValue, --parentSuperTypeTarget, parentSuperTypeTargetValue, --parentSubTypeTarget, parentSubTypeTargetValue, --childCollectionSuperTypeTarget, childCollectionSuperTypeTargetValue, --childCollectionSubTypeTarget, childCollectionSubTypeTargetValue, --parentCollectionSuperTypeTarget, parentCollectionSuperTypeTargetValue, --parentCollectionSubTypeTarget, parentCollectionSubTypeTargetValue, --childListSuperTypeTarget, childListSuperTypeTargetValue1, --childListSuperTypeTarget, childListSuperTypeTargetValue2, --childListSuperTypeTarget, childListSuperTypeTargetValue3, --childListSubTypeTarget, childListSubTypeTargetValue1, --childListSubTypeTarget, childListSubTypeTargetValue2, --childListSubTypeTarget, childListSubTypeTargetValue3, --parentListSuperTypeTarget, parentListSuperTypeTargetValue1, --parentListSuperTypeTarget, parentListSuperTypeTargetValue2, --parentListSuperTypeTarget, parentListSuperTypeTargetValue3, --parentListSubTypeTarget, parentListSubTypeTargetValue1, --parentListSubTypeTarget, parentListSubTypeTargetValue2, --parentListSubTypeTarget, parentListSubTypeTargetValue3, --childCollectionListSuperTypeTarget, childCollectionListSuperTypeTargetValue1, --childCollectionListSuperTypeTarget, childCollectionListSuperTypeTargetValue2, --childCollectionListSuperTypeTarget, childCollectionListSuperTypeTargetValue3, --childNonTargetArgument, 1, --parentNonTargetArgument, 1, --childCollectionNonTargetArgument, 1, --parentCollectionNonTargetArgument, 1, --childNonTargetListArgument, 1], [(childCollectionListSuperTypeTarget,childCollectionListSuperTypeTargetValue1), (childCollectionListSuperTypeTarget,childCollectionListSuperTypeTargetValue2), (childCollectionListSuperTypeTarget,childCollectionListSuperTypeTargetValue3), (childCollectionSubTypeTarget,childCollectionSubTypeTargetValue), (childCollectionSuperTypeTarget,childCollectionSuperTypeTargetValue), (childListSubTypeTarget,childListSubTypeTargetValue1), (childListSubTypeTarget,childListSubTypeTargetValue2), (childListSubTypeTarget,childListSubTypeTargetValue3), (childListSuperTypeTarget,childListSuperTypeTargetValue1), (childListSuperTypeTarget,childListSuperTypeTargetValue2), (childListSuperTypeTarget,childListSuperTypeTargetValue3), (childSubTypeTarget,childSubTypeTargetValue), (childSuperTypeTarget,childSuperTypeTargetValue), (parentCollectionSubTypeTarget,parentCollectionSubTypeTargetValue), (parentCollectionSuperTypeTarget,parentCollectionSuperTypeTargetValue), (parentListSubTypeTarget,parentListSubTypeTargetValue1), (parentListSubTypeTarget,parentListSubTypeTargetValue2), (parentListSubTypeTarget,parentListSubTypeTargetValue3), (parentListSuperTypeTarget,parentListSuperTypeTargetValue1), (parentListSuperTypeTarget,parentListSuperTypeTargetValue2), (parentListSuperTypeTarget,parentListSuperTypeTargetValue3), (parentSubTypeTarget,parentSubTypeTargetValue), (parentSuperTypeTarget,parentSuperTypeTargetValue), (uninitializedChildCollectionTarget,null), (uninitializedChildListTarget,null), (uninitializedChildTarget,null), (uninitializedParentCollectionTarget,null), (uninitializedParentTarget,null)])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testGatherArgumentValuesOfTypeWithParameterizedType(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testGetCommandLine(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testGetCommandLineWithSensitiveArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: USAGE: BooleanFlags [arguments] Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest.testHelp STANDARD_ERROR USAGE: BooleanFlags [arguments] Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Usage: program [arguments...] Usage: program [arguments...] Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Version:null Version:null Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Optional Arguments: Optional Arguments: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: --antiflag1:Boolean Undocumented option Default value: false. Possible values: {true, false} Cannot be used --antiflag1:Boolean Undocumented option Default value: false. Possible values: {true, false} Cannot be used Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: in conjuction with argument(s) flag1 in conjuction with argument(s) flag1 Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: --arguments_file:File read one or more arguments files and add them to the command line This argument may be --arguments_file:File read one or more arguments files and add them to the command line This argument may be Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: specified 0 or more times. Default value: null. specified 0 or more times. Default value: null. Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: --flag1:Boolean Undocumented option Default value: false. Possible values: {true, false} Cannot be used --flag1:Boolean Undocumented option Default value: false. Possible values: {true, false} Cannot be used Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: in conjuction with argument(s) antiflag1 in conjuction with argument(s) antiflag1 Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: --flag2:Boolean Undocumented option Default value: true. Possible values: {true, false} --flag2:Boolean Undocumented option Default value: true. Possible values: {true, false} Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: --flag3:Boolean Undocumented option Default value: false. Possible values: {true, false} --flag3:Boolean Undocumented option Default value: false. Possible values: {true, false} Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: --help,-h:Boolean display the help message Default value: false. Possible values: {true, false} --help,-h:Boolean display the help message Default value: false. Possible values: {true, false} Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: --version:Boolean display the version number for this tool Default value: false. Possible values: {true, --version:Boolean display the version number for this tool Default value: false. Possible values: {true, Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: false} false} Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Advanced Arguments: Advanced Arguments: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: --showHidden,-showHidden:Boolean --showHidden,-showHidden:Boolean Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: display hidden arguments Default value: false. Possible values: {true, false} display hidden arguments Default value: false. Possible values: {true, false} Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testHiddenArguments(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testHiddenRequiredArgumentThrowException(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testLongPreamble(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testMissingRequiredCollectionArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testNotEnoughOfListArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOptionalOnlyUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOutOfRangesArguments[0]([Ljava.lang.String;@48fc7078)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOutOfRangesArguments[1]([Ljava.lang.String;@7fa871cd)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOutOfRangesArguments[2]([Ljava.lang.String;@1602350e)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOutOfRangesArguments[3]([Ljava.lang.String;@78b41501)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOutOfRangesArguments[4]([Ljava.lang.String;@7b6d540a)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOutOfRangesArguments[5]([Ljava.lang.String;@448f321b)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOutOfRangesArguments[6]([Ljava.lang.String;@7708473c)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOutOfRangesArguments[7]([Ljava.lang.String;@6e43245f)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testPositive(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testPrivateArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testRequiredAdvancedNotAllowed(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testRequiredOnlyUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testRequiredOptionalWithDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testRequiredOptionalWithoutDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testVersionSpecialFlag(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Test: Test method testVersionSpecialFlag(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Version:null Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest.testVersionSpecialFlag STANDARD_ERROR Version:null Running Test: Test method testWithBoundariesArgumentsForNoNumeric(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithDoubleBoundariesArgumentsForInteger(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithinBoundariesArguments[0]([Ljava.lang.String;@25b0c885, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithinBoundariesArguments[1]([Ljava.lang.String;@1276826, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithinBoundariesArguments[2]([Ljava.lang.String;@2505c100, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithinBoundariesArguments[3]([Ljava.lang.String;@5f7b8900, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithinBoundariesArguments[4]([Ljava.lang.String;@507610d9, 1, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithinBoundariesArguments[5]([Ljava.lang.String;@792c6756, null, 2.0)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithinBoundariesArguments[6]([Ljava.lang.String;@6ca5db9c, 1, 2.0)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithoutPositionalWithDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithoutPositionalWithoutDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testBasicPlugin[0]([Ljava.lang.String;@6bab4bc2, 0)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testBasicPlugin[1]([Ljava.lang.String;@7f91eb77, 1)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDanglingFilterArguments[0](TestPluginWithRequiredArg, requiredStringArgForPlugin, fakeArgValue)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDanglingFilterArguments[1](TestPluginWithOptionalArg, optionalStringArgForPlugin, fakeArgValue)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testEnableMultiplePlugins(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testEnableNonExistentPlugin(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testNoPluginsSpecified(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testPluginArgumentNameCollision(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testPluginUsage(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testRequiredDependentArguments[0](TestPluginWithRequiredArg, requiredStringArgForPlugin, fakeArgValue)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.hotspot.agent/module-info.class] Gradle suite > Gradle test > org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest.testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false) STANDARD_OUT [loading /modules/jdk.hotspot.agent/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.net/module-info.class] [loading /modules/jdk.net/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.naming/module-info.class] [loading /modules/java.naming/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.se/module-info.class] [loading /modules/java.se/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jshell/module-info.class] [loading /modules/jdk.jshell/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jfr/module-info.class] [loading /modules/jdk.jfr/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.rmic/module-info.class] [loading /modules/jdk.rmic/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.auth/module-info.class] [loading /modules/jdk.security.auth/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler/module-info.class] [loading /modules/jdk.internal.vm.compiler/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.jgss/module-info.class] [loading /modules/jdk.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.ed/module-info.class] [loading /modules/jdk.internal.ed/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.sctp/module-info.class] [loading /modules/jdk.sctp/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.le/module-info.class] [loading /modules/jdk.internal.le/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.httpserver/module-info.class] [loading /modules/jdk.httpserver/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.jfr/module-info.class] [loading /modules/jdk.management.jfr/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.dynalink/module-info.class] [loading /modules/jdk.dynalink/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn/module-info.class] [loading /modules/jdk.scripting.nashorn/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.datatransfer/module-info.class] [loading /modules/java.datatransfer/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.rmi/module-info.class] [loading /modules/jdk.naming.rmi/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.rmi/module-info.class] [loading /modules/java.rmi/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported.desktop/module-info.class] [loading /modules/jdk.unsupported.desktop/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.prefs/module-info.class] [loading /modules/java.prefs/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/module-info.class] [loading /modules/java.base/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.agent/module-info.class] [loading /modules/jdk.management.agent/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.accessibility/module-info.class] [loading /modules/jdk.accessibility/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jconsole/module-info.class] [loading /modules/jdk.jconsole/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.attach/module-info.class] [loading /modules/jdk.attach/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdwp.agent/module-info.class] [loading /modules/jdk.jdwp.agent/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.editpad/module-info.class] [loading /modules/jdk.editpad/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jlink/module-info.class] [loading /modules/jdk.jlink/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jstatd/module-info.class] [loading /modules/jdk.jstatd/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.aot/module-info.class] [loading /modules/jdk.aot/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.dns/module-info.class] [loading /modules/jdk.naming.dns/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.cryptoki/module-info.class] [loading /modules/jdk.crypto.cryptoki/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.jvmstat/module-info.class] [loading /modules/jdk.internal.jvmstat/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jcmd/module-info.class] [loading /modules/jdk.jcmd/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler.management/module-info.class] [loading /modules/jdk.internal.vm.compiler.management/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management/module-info.class] [loading /modules/java.management/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.compiler/module-info.class] [loading /modules/jdk.compiler/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.opt/module-info.class] [loading /modules/jdk.internal.opt/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.net.http/module-info.class] [loading /modules/java.net.http/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.compiler/module-info.class] [loading /modules/java.compiler/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.desktop/module-info.class] [loading /modules/java.desktop/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.instrument/module-info.class] [loading /modules/java.instrument/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.localedata/module-info.class] [loading /modules/jdk.localedata/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jsobject/module-info.class] [loading /modules/jdk.jsobject/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management/module-info.class] [loading /modules/jdk.management/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.transaction.xa/module-info.class] [loading /modules/java.transaction.xa/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.javadoc/module-info.class] [loading /modules/jdk.javadoc/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jartool/module-info.class] [loading /modules/jdk.jartool/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.ec/module-info.class] [loading /modules/jdk.crypto.ec/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.sasl/module-info.class] [loading /modules/java.security.sasl/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.xml.dom/module-info.class] [loading /modules/jdk.xml.dom/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.scripting/module-info.class] [loading /modules/java.scripting/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.pack/module-info.class] [loading /modules/jdk.pack/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.smartcardio/module-info.class] [loading /modules/java.smartcardio/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn.shell/module-info.class] [loading /modules/jdk.scripting.nashorn.shell/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml/module-info.class] [loading /modules/java.xml/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.charsets/module-info.class] [loading /modules/jdk.charsets/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.logging/module-info.class] [loading /modules/java.logging/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.zipfs/module-info.class] [loading /modules/jdk.zipfs/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management.rmi/module-info.class] [loading /modules/java.management.rmi/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.jgss/module-info.class] [loading /modules/java.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.ldap/module-info.class] [loading /modules/jdk.naming.ldap/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.ci/module-info.class] [loading /modules/jdk.internal.vm.ci/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql.rowset/module-info.class] [loading /modules/java.sql.rowset/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported/module-info.class] [loading /modules/jdk.unsupported/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdi/module-info.class] [loading /modules/jdk.jdi/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql/module-info.class] [loading /modules/java.sql/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdeps/module-info.class] [loading /modules/jdk.jdeps/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml.crypto/module-info.class] [loading /modules/java.xml.crypto/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.help.testinputs... Loading source files for package org.broadinstitute.barclay.help.testinputs... Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 104ms] [parsing completed 104ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 3ms] [parsing completed 3ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 7ms] [parsing completed 7ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 5ms] [parsing completed 5ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.argparser... Loading source files for package org.broadinstitute.barclay.argparser... Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 191ms] [parsing completed 191ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 28ms] [parsing completed 28ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 23ms] [parsing completed 23ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 73ms] [parsing completed 73ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 23ms] [parsing completed 23ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Constructing Javadoc information... Constructing Javadoc information... Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for source files: src/test/java] [search path for source files: src/test/java] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-2.1.0/build/classes/java/test,/build/barclay-2.1.0/build/resources/test,/build/barclay-2.1.0/build/classes/java/main,/build/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar] [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-2.1.0/build/classes/java/test,/build/barclay-2.1.0/build/resources/test,/build/barclay-2.1.0/build/classes/java/main,/build/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/File.class] [loading /modules/java.base/java/io/File.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Object.class] [loading /modules/java.base/java/lang/Object.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/String.class] [loading /modules/java.base/java/lang/String.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/List.class] [loading /modules/java.base/java/util/List.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Double.class] [loading /modules/java.base/java/lang/Double.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/ArrayList.class] [loading /modules/java.base/java/util/ArrayList.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Enum.class] [loading /modules/java.base/java/lang/Enum.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Comparable.class] [loading /modules/java.base/java/lang/Comparable.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Serializable.class] [loading /modules/java.base/java/io/Serializable.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/ByteArrayOutputStream.class] [loading /modules/java.base/java/io/ByteArrayOutputStream.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintStream.class] [loading /modules/java.base/java/io/PrintStream.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintWriter.class] [loading /modules/java.base/java/io/PrintWriter.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/reflect/Field.class] [loading /modules/java.base/java/lang/reflect/Field.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/function/Consumer.class] [loading /modules/java.base/java/util/function/Consumer.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Exception.class] [loading /modules/java.base/java/lang/Exception.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Runnable.class] [loading /modules/java.base/java/lang/Runnable.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Integer.class] [loading /modules/java.base/java/lang/Integer.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Boolean.class] [loading /modules/java.base/java/lang/Boolean.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Class.class] [loading /modules/java.base/java/lang/Class.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Map.class] [loading /modules/java.base/java/util/Map.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Set.class] [loading /modules/java.base/java/util/Set.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/IllegalAccessException.class] [loading /modules/java.base/java/lang/IllegalAccessException.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/InstantiationException.class] [loading /modules/java.base/java/lang/InstantiationException.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/HashSet.class] [loading /modules/java.base/java/util/HashSet.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Collection.class] [loading /modules/java.base/java/util/Collection.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/OutputStream.class] [loading /modules/java.base/java/io/OutputStream.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Closeable.class] [loading /modules/java.base/java/io/Closeable.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AutoCloseable.class] [loading /modules/java.base/java/lang/AutoCloseable.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Flushable.class] [loading /modules/java.base/java/io/Flushable.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/IOException.class] [loading /modules/java.base/java/io/IOException.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Deprecated.class] [loading /modules/java.base/java/lang/Deprecated.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Retention.class] [loading /modules/java.base/java/lang/annotation/Retention.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Target.class] [loading /modules/java.base/java/lang/annotation/Target.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/ElementType.class] [loading /modules/java.base/java/lang/annotation/ElementType.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Annotation.class] [loading /modules/java.base/java/lang/annotation/Annotation.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Override.class] [loading /modules/java.base/java/lang/Override.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/SuppressWarnings.class] [loading /modules/java.base/java/lang/SuppressWarnings.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Byte.class] [loading /modules/java.base/java/lang/Byte.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Character.class] [loading /modules/java.base/java/lang/Character.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Short.class] [loading /modules/java.base/java/lang/Short.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Long.class] [loading /modules/java.base/java/lang/Long.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Float.class] [loading /modules/java.base/java/lang/Float.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Void.class] [loading /modules/java.base/java/lang/Void.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AssertionError.class] [loading /modules/java.base/java/lang/AssertionError.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser$ParsedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser$ParsedArgument.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@24fc67bc, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [done in 5152 ms] [done in 5152 ms] Running Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.jfr/module-info.class] Gradle suite > Gradle test > org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest.testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false) STANDARD_OUT [loading /modules/jdk.management.jfr/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.le/module-info.class] [loading /modules/jdk.internal.le/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.se/module-info.class] [loading /modules/java.se/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jsobject/module-info.class] [loading /modules/jdk.jsobject/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.prefs/module-info.class] [loading /modules/java.prefs/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.rmi/module-info.class] [loading /modules/jdk.naming.rmi/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.scripting/module-info.class] [loading /modules/java.scripting/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.ec/module-info.class] [loading /modules/jdk.crypto.ec/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.cryptoki/module-info.class] [loading /modules/jdk.crypto.cryptoki/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.accessibility/module-info.class] [loading /modules/jdk.accessibility/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.jvmstat/module-info.class] [loading /modules/jdk.internal.jvmstat/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.agent/module-info.class] [loading /modules/jdk.management.agent/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.sctp/module-info.class] [loading /modules/jdk.sctp/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.dns/module-info.class] [loading /modules/jdk.naming.dns/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml.crypto/module-info.class] [loading /modules/java.xml.crypto/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.desktop/module-info.class] [loading /modules/java.desktop/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.dynalink/module-info.class] [loading /modules/jdk.dynalink/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jshell/module-info.class] [loading /modules/jdk.jshell/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.attach/module-info.class] [loading /modules/jdk.attach/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jlink/module-info.class] [loading /modules/jdk.jlink/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdwp.agent/module-info.class] [loading /modules/jdk.jdwp.agent/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported.desktop/module-info.class] [loading /modules/jdk.unsupported.desktop/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jartool/module-info.class] [loading /modules/jdk.jartool/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.zipfs/module-info.class] [loading /modules/jdk.zipfs/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdeps/module-info.class] [loading /modules/jdk.jdeps/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.datatransfer/module-info.class] [loading /modules/java.datatransfer/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.charsets/module-info.class] [loading /modules/jdk.charsets/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler.management/module-info.class] [loading /modules/jdk.internal.vm.compiler.management/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.editpad/module-info.class] [loading /modules/jdk.editpad/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.jgss/module-info.class] [loading /modules/jdk.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.opt/module-info.class] [loading /modules/jdk.internal.opt/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.auth/module-info.class] [loading /modules/jdk.security.auth/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.transaction.xa/module-info.class] [loading /modules/java.transaction.xa/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.ldap/module-info.class] [loading /modules/jdk.naming.ldap/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.rmic/module-info.class] [loading /modules/jdk.rmic/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.ci/module-info.class] [loading /modules/jdk.internal.vm.ci/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.pack/module-info.class] [loading /modules/jdk.pack/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.jgss/module-info.class] [loading /modules/java.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management/module-info.class] [loading /modules/jdk.management/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management/module-info.class] [loading /modules/java.management/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.ed/module-info.class] [loading /modules/jdk.internal.ed/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler/module-info.class] [loading /modules/jdk.internal.vm.compiler/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.localedata/module-info.class] [loading /modules/jdk.localedata/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/module-info.class] [loading /modules/java.base/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management.rmi/module-info.class] [loading /modules/java.management.rmi/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.rmi/module-info.class] [loading /modules/java.rmi/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql/module-info.class] [loading /modules/java.sql/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.compiler/module-info.class] [loading /modules/java.compiler/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn/module-info.class] [loading /modules/jdk.scripting.nashorn/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jconsole/module-info.class] [loading /modules/jdk.jconsole/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.javadoc/module-info.class] [loading /modules/jdk.javadoc/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.net/module-info.class] [loading /modules/jdk.net/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.instrument/module-info.class] [loading /modules/java.instrument/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml/module-info.class] [loading /modules/java.xml/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jcmd/module-info.class] [loading /modules/jdk.jcmd/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.hotspot.agent/module-info.class] [loading /modules/jdk.hotspot.agent/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql.rowset/module-info.class] [loading /modules/java.sql.rowset/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn.shell/module-info.class] [loading /modules/jdk.scripting.nashorn.shell/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.aot/module-info.class] [loading /modules/jdk.aot/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.httpserver/module-info.class] [loading /modules/jdk.httpserver/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.xml.dom/module-info.class] [loading /modules/jdk.xml.dom/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jstatd/module-info.class] [loading /modules/jdk.jstatd/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.compiler/module-info.class] [loading /modules/jdk.compiler/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.logging/module-info.class] [loading /modules/java.logging/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported/module-info.class] [loading /modules/jdk.unsupported/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.smartcardio/module-info.class] [loading /modules/java.smartcardio/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.sasl/module-info.class] [loading /modules/java.security.sasl/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.net.http/module-info.class] [loading /modules/java.net.http/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jfr/module-info.class] [loading /modules/jdk.jfr/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdi/module-info.class] [loading /modules/jdk.jdi/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.naming/module-info.class] [loading /modules/java.naming/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.help.testinputs... Loading source files for package org.broadinstitute.barclay.help.testinputs... Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 20ms] [parsing completed 20ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.argparser... Loading source files for package org.broadinstitute.barclay.argparser... Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 67ms] [parsing completed 67ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 21ms] [parsing completed 21ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 10ms] [parsing completed 10ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 37ms] [parsing completed 37ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 14ms] [parsing completed 14ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Constructing Javadoc information... Constructing Javadoc information... Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for source files: src/test/java] [search path for source files: src/test/java] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-2.1.0/build/classes/java/test,/build/barclay-2.1.0/build/resources/test,/build/barclay-2.1.0/build/classes/java/main,/build/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar] [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-2.1.0/build/classes/java/test,/build/barclay-2.1.0/build/resources/test,/build/barclay-2.1.0/build/classes/java/main,/build/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/File.class] [loading /modules/java.base/java/io/File.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Object.class] [loading /modules/java.base/java/lang/Object.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/String.class] [loading /modules/java.base/java/lang/String.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/List.class] [loading /modules/java.base/java/util/List.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Double.class] [loading /modules/java.base/java/lang/Double.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/ArrayList.class] [loading /modules/java.base/java/util/ArrayList.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Enum.class] [loading /modules/java.base/java/lang/Enum.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Comparable.class] [loading /modules/java.base/java/lang/Comparable.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Serializable.class] [loading /modules/java.base/java/io/Serializable.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/ByteArrayOutputStream.class] [loading /modules/java.base/java/io/ByteArrayOutputStream.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintStream.class] [loading /modules/java.base/java/io/PrintStream.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintWriter.class] [loading /modules/java.base/java/io/PrintWriter.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/reflect/Field.class] [loading /modules/java.base/java/lang/reflect/Field.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/function/Consumer.class] [loading /modules/java.base/java/util/function/Consumer.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Exception.class] [loading /modules/java.base/java/lang/Exception.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Runnable.class] [loading /modules/java.base/java/lang/Runnable.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Integer.class] [loading /modules/java.base/java/lang/Integer.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Boolean.class] [loading /modules/java.base/java/lang/Boolean.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Class.class] [loading /modules/java.base/java/lang/Class.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Map.class] [loading /modules/java.base/java/util/Map.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Set.class] [loading /modules/java.base/java/util/Set.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/IllegalAccessException.class] [loading /modules/java.base/java/lang/IllegalAccessException.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/InstantiationException.class] [loading /modules/java.base/java/lang/InstantiationException.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/HashSet.class] [loading /modules/java.base/java/util/HashSet.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Collection.class] [loading /modules/java.base/java/util/Collection.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/OutputStream.class] [loading /modules/java.base/java/io/OutputStream.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Closeable.class] [loading /modules/java.base/java/io/Closeable.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AutoCloseable.class] [loading /modules/java.base/java/lang/AutoCloseable.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Flushable.class] [loading /modules/java.base/java/io/Flushable.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/IOException.class] [loading /modules/java.base/java/io/IOException.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Deprecated.class] [loading /modules/java.base/java/lang/Deprecated.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Retention.class] [loading /modules/java.base/java/lang/annotation/Retention.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Target.class] [loading /modules/java.base/java/lang/annotation/Target.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/ElementType.class] [loading /modules/java.base/java/lang/annotation/ElementType.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Annotation.class] [loading /modules/java.base/java/lang/annotation/Annotation.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Override.class] [loading /modules/java.base/java/lang/Override.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/SuppressWarnings.class] [loading /modules/java.base/java/lang/SuppressWarnings.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Byte.class] [loading /modules/java.base/java/lang/Byte.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Character.class] [loading /modules/java.base/java/lang/Character.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Short.class] [loading /modules/java.base/java/lang/Short.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Long.class] [loading /modules/java.base/java/lang/Long.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Float.class] [loading /modules/java.base/java/lang/Float.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Void.class] [loading /modules/java.base/java/lang/Void.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AssertionError.class] [loading /modules/java.base/java/lang/AssertionError.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser$ParsedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser$ParsedArgument.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@33f6292a, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [done in 1508 ms] [done in 1508 ms] Running Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.charsets/module-info.class] Gradle suite > Gradle test > org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest.testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false) STANDARD_OUT [loading /modules/jdk.charsets/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported/module-info.class] [loading /modules/jdk.unsupported/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml/module-info.class] [loading /modules/java.xml/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.se/module-info.class] [loading /modules/java.se/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management/module-info.class] [loading /modules/java.management/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.compiler/module-info.class] [loading /modules/jdk.compiler/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.transaction.xa/module-info.class] [loading /modules/java.transaction.xa/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.aot/module-info.class] [loading /modules/jdk.aot/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.editpad/module-info.class] [loading /modules/jdk.editpad/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.auth/module-info.class] [loading /modules/jdk.security.auth/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml.crypto/module-info.class] [loading /modules/java.xml.crypto/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jfr/module-info.class] [loading /modules/jdk.jfr/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.compiler/module-info.class] [loading /modules/java.compiler/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.sctp/module-info.class] [loading /modules/jdk.sctp/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jlink/module-info.class] [loading /modules/jdk.jlink/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.cryptoki/module-info.class] [loading /modules/jdk.crypto.cryptoki/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.jfr/module-info.class] [loading /modules/jdk.management.jfr/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.attach/module-info.class] [loading /modules/jdk.attach/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.accessibility/module-info.class] [loading /modules/jdk.accessibility/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.rmi/module-info.class] [loading /modules/jdk.naming.rmi/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql.rowset/module-info.class] [loading /modules/java.sql.rowset/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.jvmstat/module-info.class] [loading /modules/jdk.internal.jvmstat/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jshell/module-info.class] [loading /modules/jdk.jshell/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.opt/module-info.class] [loading /modules/jdk.internal.opt/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jcmd/module-info.class] [loading /modules/jdk.jcmd/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn.shell/module-info.class] [loading /modules/jdk.scripting.nashorn.shell/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.instrument/module-info.class] [loading /modules/java.instrument/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.hotspot.agent/module-info.class] [loading /modules/jdk.hotspot.agent/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.ec/module-info.class] [loading /modules/jdk.crypto.ec/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.rmic/module-info.class] [loading /modules/jdk.rmic/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdeps/module-info.class] [loading /modules/jdk.jdeps/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.smartcardio/module-info.class] [loading /modules/java.smartcardio/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.jgss/module-info.class] [loading /modules/java.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.ed/module-info.class] [loading /modules/jdk.internal.ed/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.dynalink/module-info.class] [loading /modules/jdk.dynalink/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.rmi/module-info.class] [loading /modules/java.rmi/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jstatd/module-info.class] [loading /modules/jdk.jstatd/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdwp.agent/module-info.class] [loading /modules/jdk.jdwp.agent/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn/module-info.class] [loading /modules/jdk.scripting.nashorn/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.dns/module-info.class] [loading /modules/jdk.naming.dns/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.jgss/module-info.class] [loading /modules/jdk.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler.management/module-info.class] [loading /modules/jdk.internal.vm.compiler.management/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.agent/module-info.class] [loading /modules/jdk.management.agent/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jconsole/module-info.class] [loading /modules/jdk.jconsole/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.naming/module-info.class] [loading /modules/java.naming/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.localedata/module-info.class] [loading /modules/jdk.localedata/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.desktop/module-info.class] [loading /modules/java.desktop/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.javadoc/module-info.class] [loading /modules/jdk.javadoc/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.xml.dom/module-info.class] [loading /modules/jdk.xml.dom/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.logging/module-info.class] [loading /modules/java.logging/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.le/module-info.class] [loading /modules/jdk.internal.le/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.ci/module-info.class] [loading /modules/jdk.internal.vm.ci/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported.desktop/module-info.class] [loading /modules/jdk.unsupported.desktop/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.pack/module-info.class] [loading /modules/jdk.pack/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jsobject/module-info.class] [loading /modules/jdk.jsobject/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management/module-info.class] [loading /modules/jdk.management/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/module-info.class] [loading /modules/java.base/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jartool/module-info.class] [loading /modules/jdk.jartool/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdi/module-info.class] [loading /modules/jdk.jdi/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.net.http/module-info.class] [loading /modules/java.net.http/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler/module-info.class] [loading /modules/jdk.internal.vm.compiler/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.prefs/module-info.class] [loading /modules/java.prefs/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.scripting/module-info.class] [loading /modules/java.scripting/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.ldap/module-info.class] [loading /modules/jdk.naming.ldap/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.net/module-info.class] [loading /modules/jdk.net/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.datatransfer/module-info.class] [loading /modules/java.datatransfer/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.sasl/module-info.class] [loading /modules/java.security.sasl/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.httpserver/module-info.class] [loading /modules/jdk.httpserver/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management.rmi/module-info.class] [loading /modules/java.management.rmi/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.zipfs/module-info.class] [loading /modules/jdk.zipfs/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql/module-info.class] [loading /modules/java.sql/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.help.testinputs... Loading source files for package org.broadinstitute.barclay.help.testinputs... Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 43ms] [parsing completed 43ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 12ms] [parsing completed 12ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.argparser... Loading source files for package org.broadinstitute.barclay.argparser... Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 67ms] [parsing completed 67ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 70ms] [parsing completed 70ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 89ms] [parsing completed 89ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 60ms] [parsing completed 60ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 3ms] [parsing completed 3ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Constructing Javadoc information... Constructing Javadoc information... Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for source files: src/test/java] [search path for source files: src/test/java] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-2.1.0/build/classes/java/test,/build/barclay-2.1.0/build/resources/test,/build/barclay-2.1.0/build/classes/java/main,/build/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar] [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-2.1.0/build/classes/java/test,/build/barclay-2.1.0/build/resources/test,/build/barclay-2.1.0/build/classes/java/main,/build/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/File.class] [loading /modules/java.base/java/io/File.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Object.class] [loading /modules/java.base/java/lang/Object.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/String.class] [loading /modules/java.base/java/lang/String.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/List.class] [loading /modules/java.base/java/util/List.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Double.class] [loading /modules/java.base/java/lang/Double.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/ArrayList.class] [loading /modules/java.base/java/util/ArrayList.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Enum.class] [loading /modules/java.base/java/lang/Enum.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Comparable.class] [loading /modules/java.base/java/lang/Comparable.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Serializable.class] [loading /modules/java.base/java/io/Serializable.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/ByteArrayOutputStream.class] [loading /modules/java.base/java/io/ByteArrayOutputStream.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintStream.class] [loading /modules/java.base/java/io/PrintStream.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintWriter.class] [loading /modules/java.base/java/io/PrintWriter.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/reflect/Field.class] [loading /modules/java.base/java/lang/reflect/Field.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/function/Consumer.class] [loading /modules/java.base/java/util/function/Consumer.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Exception.class] [loading /modules/java.base/java/lang/Exception.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Runnable.class] [loading /modules/java.base/java/lang/Runnable.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Integer.class] [loading /modules/java.base/java/lang/Integer.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Boolean.class] [loading /modules/java.base/java/lang/Boolean.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Class.class] [loading /modules/java.base/java/lang/Class.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Map.class] [loading /modules/java.base/java/util/Map.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Set.class] [loading /modules/java.base/java/util/Set.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/IllegalAccessException.class] [loading /modules/java.base/java/lang/IllegalAccessException.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/InstantiationException.class] [loading /modules/java.base/java/lang/InstantiationException.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/HashSet.class] [loading /modules/java.base/java/util/HashSet.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Collection.class] [loading /modules/java.base/java/util/Collection.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/OutputStream.class] [loading /modules/java.base/java/io/OutputStream.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Closeable.class] [loading /modules/java.base/java/io/Closeable.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AutoCloseable.class] [loading /modules/java.base/java/lang/AutoCloseable.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Flushable.class] [loading /modules/java.base/java/io/Flushable.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/IOException.class] [loading /modules/java.base/java/io/IOException.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Deprecated.class] [loading /modules/java.base/java/lang/Deprecated.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Retention.class] [loading /modules/java.base/java/lang/annotation/Retention.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Target.class] [loading /modules/java.base/java/lang/annotation/Target.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/ElementType.class] [loading /modules/java.base/java/lang/annotation/ElementType.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Annotation.class] [loading /modules/java.base/java/lang/annotation/Annotation.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Override.class] [loading /modules/java.base/java/lang/Override.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/SuppressWarnings.class] [loading /modules/java.base/java/lang/SuppressWarnings.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Byte.class] [loading /modules/java.base/java/lang/Byte.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Character.class] [loading /modules/java.base/java/lang/Character.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Short.class] [loading /modules/java.base/java/lang/Short.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Long.class] [loading /modules/java.base/java/lang/Long.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Float.class] [loading /modules/java.base/java/lang/Float.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Void.class] [loading /modules/java.base/java/lang/Void.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AssertionError.class] [loading /modules/java.base/java/lang/AssertionError.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser$ParsedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser$ParsedArgument.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@b076be7, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [done in 1406 ms] [done in 1406 ms] Running Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.cryptoki/module-info.class] Gradle suite > Gradle test > org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest.testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true) STANDARD_OUT [loading /modules/jdk.crypto.cryptoki/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.sctp/module-info.class] [loading /modules/jdk.sctp/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.charsets/module-info.class] [loading /modules/jdk.charsets/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.transaction.xa/module-info.class] [loading /modules/java.transaction.xa/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.rmi/module-info.class] [loading /modules/java.rmi/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.ci/module-info.class] [loading /modules/jdk.internal.vm.ci/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn.shell/module-info.class] [loading /modules/jdk.scripting.nashorn.shell/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.net/module-info.class] [loading /modules/jdk.net/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.dynalink/module-info.class] [loading /modules/jdk.dynalink/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management/module-info.class] [loading /modules/java.management/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml.crypto/module-info.class] [loading /modules/java.xml.crypto/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.jvmstat/module-info.class] [loading /modules/jdk.internal.jvmstat/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.naming/module-info.class] [loading /modules/java.naming/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.opt/module-info.class] [loading /modules/jdk.internal.opt/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdwp.agent/module-info.class] [loading /modules/jdk.jdwp.agent/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.ec/module-info.class] [loading /modules/jdk.crypto.ec/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.editpad/module-info.class] [loading /modules/jdk.editpad/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.datatransfer/module-info.class] [loading /modules/java.datatransfer/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.localedata/module-info.class] [loading /modules/jdk.localedata/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management.rmi/module-info.class] [loading /modules/java.management.rmi/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.attach/module-info.class] [loading /modules/jdk.attach/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.xml.dom/module-info.class] [loading /modules/jdk.xml.dom/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.compiler/module-info.class] [loading /modules/jdk.compiler/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.se/module-info.class] [loading /modules/java.se/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jconsole/module-info.class] [loading /modules/jdk.jconsole/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.logging/module-info.class] [loading /modules/java.logging/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.net.http/module-info.class] [loading /modules/java.net.http/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jcmd/module-info.class] [loading /modules/jdk.jcmd/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jfr/module-info.class] [loading /modules/jdk.jfr/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jartool/module-info.class] [loading /modules/jdk.jartool/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.instrument/module-info.class] [loading /modules/java.instrument/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.scripting/module-info.class] [loading /modules/java.scripting/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.pack/module-info.class] [loading /modules/jdk.pack/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported/module-info.class] [loading /modules/jdk.unsupported/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler/module-info.class] [loading /modules/jdk.internal.vm.compiler/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.le/module-info.class] [loading /modules/jdk.internal.le/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql/module-info.class] [loading /modules/java.sql/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler.management/module-info.class] [loading /modules/jdk.internal.vm.compiler.management/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.smartcardio/module-info.class] [loading /modules/java.smartcardio/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.rmi/module-info.class] [loading /modules/jdk.naming.rmi/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.httpserver/module-info.class] [loading /modules/jdk.httpserver/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.dns/module-info.class] [loading /modules/jdk.naming.dns/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/module-info.class] [loading /modules/java.base/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.javadoc/module-info.class] [loading /modules/jdk.javadoc/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.jgss/module-info.class] [loading /modules/jdk.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql.rowset/module-info.class] [loading /modules/java.sql.rowset/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jstatd/module-info.class] [loading /modules/jdk.jstatd/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.hotspot.agent/module-info.class] [loading /modules/jdk.hotspot.agent/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jlink/module-info.class] [loading /modules/jdk.jlink/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.aot/module-info.class] [loading /modules/jdk.aot/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.accessibility/module-info.class] [loading /modules/jdk.accessibility/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.jgss/module-info.class] [loading /modules/java.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.ldap/module-info.class] [loading /modules/jdk.naming.ldap/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.zipfs/module-info.class] [loading /modules/jdk.zipfs/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.sasl/module-info.class] [loading /modules/java.security.sasl/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.jfr/module-info.class] [loading /modules/jdk.management.jfr/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.prefs/module-info.class] [loading /modules/java.prefs/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jsobject/module-info.class] [loading /modules/jdk.jsobject/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.desktop/module-info.class] [loading /modules/java.desktop/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdi/module-info.class] [loading /modules/jdk.jdi/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.rmic/module-info.class] [loading /modules/jdk.rmic/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.auth/module-info.class] [loading /modules/jdk.security.auth/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management/module-info.class] [loading /modules/jdk.management/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported.desktop/module-info.class] [loading /modules/jdk.unsupported.desktop/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.agent/module-info.class] [loading /modules/jdk.management.agent/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.compiler/module-info.class] [loading /modules/java.compiler/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.ed/module-info.class] [loading /modules/jdk.internal.ed/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdeps/module-info.class] [loading /modules/jdk.jdeps/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn/module-info.class] [loading /modules/jdk.scripting.nashorn/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jshell/module-info.class] [loading /modules/jdk.jshell/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml/module-info.class] [loading /modules/java.xml/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.help.testinputs... Loading source files for package org.broadinstitute.barclay.help.testinputs... Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 4ms] [parsing completed 4ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.argparser... Loading source files for package org.broadinstitute.barclay.argparser... Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 12ms] [parsing completed 12ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 8ms] [parsing completed 8ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 15ms] [parsing completed 15ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 18ms] [parsing completed 18ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 15ms] [parsing completed 15ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Constructing Javadoc information... Constructing Javadoc information... Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for source files: src/test/java] [search path for source files: src/test/java] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-2.1.0/build/classes/java/test,/build/barclay-2.1.0/build/resources/test,/build/barclay-2.1.0/build/classes/java/main,/build/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar] [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-2.1.0/build/classes/java/test,/build/barclay-2.1.0/build/resources/test,/build/barclay-2.1.0/build/classes/java/main,/build/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/File.class] [loading /modules/java.base/java/io/File.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Object.class] [loading /modules/java.base/java/lang/Object.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/String.class] [loading /modules/java.base/java/lang/String.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/List.class] [loading /modules/java.base/java/util/List.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Double.class] [loading /modules/java.base/java/lang/Double.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/ArrayList.class] [loading /modules/java.base/java/util/ArrayList.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Enum.class] [loading /modules/java.base/java/lang/Enum.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Comparable.class] [loading /modules/java.base/java/lang/Comparable.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Serializable.class] [loading /modules/java.base/java/io/Serializable.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/ByteArrayOutputStream.class] [loading /modules/java.base/java/io/ByteArrayOutputStream.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintStream.class] [loading /modules/java.base/java/io/PrintStream.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintWriter.class] [loading /modules/java.base/java/io/PrintWriter.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/reflect/Field.class] [loading /modules/java.base/java/lang/reflect/Field.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/function/Consumer.class] [loading /modules/java.base/java/util/function/Consumer.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Exception.class] [loading /modules/java.base/java/lang/Exception.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Runnable.class] [loading /modules/java.base/java/lang/Runnable.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Integer.class] [loading /modules/java.base/java/lang/Integer.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Boolean.class] [loading /modules/java.base/java/lang/Boolean.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Class.class] [loading /modules/java.base/java/lang/Class.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Map.class] [loading /modules/java.base/java/util/Map.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Set.class] [loading /modules/java.base/java/util/Set.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/IllegalAccessException.class] [loading /modules/java.base/java/lang/IllegalAccessException.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/InstantiationException.class] [loading /modules/java.base/java/lang/InstantiationException.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/HashSet.class] [loading /modules/java.base/java/util/HashSet.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Collection.class] [loading /modules/java.base/java/util/Collection.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/OutputStream.class] [loading /modules/java.base/java/io/OutputStream.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Closeable.class] [loading /modules/java.base/java/io/Closeable.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AutoCloseable.class] [loading /modules/java.base/java/lang/AutoCloseable.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Flushable.class] [loading /modules/java.base/java/io/Flushable.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/IOException.class] [loading /modules/java.base/java/io/IOException.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Deprecated.class] [loading /modules/java.base/java/lang/Deprecated.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Retention.class] [loading /modules/java.base/java/lang/annotation/Retention.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Target.class] [loading /modules/java.base/java/lang/annotation/Target.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/ElementType.class] [loading /modules/java.base/java/lang/annotation/ElementType.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Annotation.class] [loading /modules/java.base/java/lang/annotation/Annotation.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Override.class] [loading /modules/java.base/java/lang/Override.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/SuppressWarnings.class] [loading /modules/java.base/java/lang/SuppressWarnings.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Byte.class] [loading /modules/java.base/java/lang/Byte.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Character.class] [loading /modules/java.base/java/lang/Character.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Short.class] [loading /modules/java.base/java/lang/Short.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Long.class] [loading /modules/java.base/java/lang/Long.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Float.class] [loading /modules/java.base/java/lang/Float.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Void.class] [loading /modules/java.base/java/lang/Void.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AssertionError.class] [loading /modules/java.base/java/lang/AssertionError.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser$ParsedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser$ParsedArgument.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@479b11c9, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [done in 620 ms] [done in 620 ms] Running Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.httpserver/module-info.class] Gradle suite > Gradle test > org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest.testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false) STANDARD_OUT [loading /modules/jdk.httpserver/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.ldap/module-info.class] [loading /modules/jdk.naming.ldap/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.naming/module-info.class] [loading /modules/java.naming/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.jfr/module-info.class] [loading /modules/jdk.management.jfr/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.rmi/module-info.class] [loading /modules/jdk.naming.rmi/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.smartcardio/module-info.class] [loading /modules/java.smartcardio/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported/module-info.class] [loading /modules/jdk.unsupported/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.sasl/module-info.class] [loading /modules/java.security.sasl/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.cryptoki/module-info.class] [loading /modules/jdk.crypto.cryptoki/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.net/module-info.class] [loading /modules/jdk.net/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.logging/module-info.class] [loading /modules/java.logging/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.prefs/module-info.class] [loading /modules/java.prefs/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.charsets/module-info.class] [loading /modules/jdk.charsets/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.xml.dom/module-info.class] [loading /modules/jdk.xml.dom/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler/module-info.class] [loading /modules/jdk.internal.vm.compiler/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jstatd/module-info.class] [loading /modules/jdk.jstatd/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.zipfs/module-info.class] [loading /modules/jdk.zipfs/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml.crypto/module-info.class] [loading /modules/java.xml.crypto/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.datatransfer/module-info.class] [loading /modules/java.datatransfer/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn.shell/module-info.class] [loading /modules/jdk.scripting.nashorn.shell/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.accessibility/module-info.class] [loading /modules/jdk.accessibility/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.attach/module-info.class] [loading /modules/jdk.attach/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn/module-info.class] [loading /modules/jdk.scripting.nashorn/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management/module-info.class] [loading /modules/java.management/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.jvmstat/module-info.class] [loading /modules/jdk.internal.jvmstat/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jshell/module-info.class] [loading /modules/jdk.jshell/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.ec/module-info.class] [loading /modules/jdk.crypto.ec/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.opt/module-info.class] [loading /modules/jdk.internal.opt/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.hotspot.agent/module-info.class] [loading /modules/jdk.hotspot.agent/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.javadoc/module-info.class] [loading /modules/jdk.javadoc/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management.rmi/module-info.class] [loading /modules/java.management.rmi/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.compiler/module-info.class] [loading /modules/jdk.compiler/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/module-info.class] [loading /modules/java.base/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.editpad/module-info.class] [loading /modules/jdk.editpad/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.pack/module-info.class] [loading /modules/jdk.pack/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.auth/module-info.class] [loading /modules/jdk.security.auth/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.net.http/module-info.class] [loading /modules/java.net.http/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.jgss/module-info.class] [loading /modules/jdk.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.jgss/module-info.class] [loading /modules/java.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.sctp/module-info.class] [loading /modules/jdk.sctp/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jartool/module-info.class] [loading /modules/jdk.jartool/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdwp.agent/module-info.class] [loading /modules/jdk.jdwp.agent/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.se/module-info.class] [loading /modules/java.se/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdi/module-info.class] [loading /modules/jdk.jdi/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jsobject/module-info.class] [loading /modules/jdk.jsobject/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management/module-info.class] [loading /modules/jdk.management/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.agent/module-info.class] [loading /modules/jdk.management.agent/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.le/module-info.class] [loading /modules/jdk.internal.le/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.desktop/module-info.class] [loading /modules/java.desktop/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.aot/module-info.class] [loading /modules/jdk.aot/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdeps/module-info.class] [loading /modules/jdk.jdeps/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.ed/module-info.class] [loading /modules/jdk.internal.ed/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.compiler/module-info.class] [loading /modules/java.compiler/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.dynalink/module-info.class] [loading /modules/jdk.dynalink/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml/module-info.class] [loading /modules/java.xml/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.dns/module-info.class] [loading /modules/jdk.naming.dns/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jconsole/module-info.class] [loading /modules/jdk.jconsole/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.rmic/module-info.class] [loading /modules/jdk.rmic/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql.rowset/module-info.class] [loading /modules/java.sql.rowset/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.localedata/module-info.class] [loading /modules/jdk.localedata/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.transaction.xa/module-info.class] [loading /modules/java.transaction.xa/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported.desktop/module-info.class] [loading /modules/jdk.unsupported.desktop/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jcmd/module-info.class] [loading /modules/jdk.jcmd/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.ci/module-info.class] [loading /modules/jdk.internal.vm.ci/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jlink/module-info.class] [loading /modules/jdk.jlink/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.instrument/module-info.class] [loading /modules/java.instrument/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jfr/module-info.class] [loading /modules/jdk.jfr/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql/module-info.class] [loading /modules/java.sql/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.rmi/module-info.class] [loading /modules/java.rmi/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler.management/module-info.class] [loading /modules/jdk.internal.vm.compiler.management/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.scripting/module-info.class] [loading /modules/java.scripting/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.help.testinputs... Loading source files for package org.broadinstitute.barclay.help.testinputs... Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 2ms] [parsing completed 2ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.argparser... Loading source files for package org.broadinstitute.barclay.argparser... Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 7ms] [parsing completed 7ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 3ms] [parsing completed 3ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 20ms] [parsing completed 20ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 3ms] [parsing completed 3ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Constructing Javadoc information... Constructing Javadoc information... Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for source files: src/test/java] [search path for source files: src/test/java] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-2.1.0/build/classes/java/test,/build/barclay-2.1.0/build/resources/test,/build/barclay-2.1.0/build/classes/java/main,/build/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar] [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-2.1.0/build/classes/java/test,/build/barclay-2.1.0/build/resources/test,/build/barclay-2.1.0/build/classes/java/main,/build/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/File.class] [loading /modules/java.base/java/io/File.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Object.class] [loading /modules/java.base/java/lang/Object.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/String.class] [loading /modules/java.base/java/lang/String.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/List.class] [loading /modules/java.base/java/util/List.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Double.class] [loading /modules/java.base/java/lang/Double.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/ArrayList.class] [loading /modules/java.base/java/util/ArrayList.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Enum.class] [loading /modules/java.base/java/lang/Enum.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Comparable.class] [loading /modules/java.base/java/lang/Comparable.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Serializable.class] [loading /modules/java.base/java/io/Serializable.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/ByteArrayOutputStream.class] [loading /modules/java.base/java/io/ByteArrayOutputStream.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintStream.class] [loading /modules/java.base/java/io/PrintStream.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintWriter.class] [loading /modules/java.base/java/io/PrintWriter.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/reflect/Field.class] [loading /modules/java.base/java/lang/reflect/Field.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/function/Consumer.class] [loading /modules/java.base/java/util/function/Consumer.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Exception.class] [loading /modules/java.base/java/lang/Exception.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Runnable.class] [loading /modules/java.base/java/lang/Runnable.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Integer.class] [loading /modules/java.base/java/lang/Integer.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Boolean.class] [loading /modules/java.base/java/lang/Boolean.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Class.class] [loading /modules/java.base/java/lang/Class.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Map.class] [loading /modules/java.base/java/util/Map.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Set.class] [loading /modules/java.base/java/util/Set.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/IllegalAccessException.class] [loading /modules/java.base/java/lang/IllegalAccessException.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/InstantiationException.class] [loading /modules/java.base/java/lang/InstantiationException.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/HashSet.class] [loading /modules/java.base/java/util/HashSet.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Collection.class] [loading /modules/java.base/java/util/Collection.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/OutputStream.class] [loading /modules/java.base/java/io/OutputStream.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Closeable.class] [loading /modules/java.base/java/io/Closeable.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AutoCloseable.class] [loading /modules/java.base/java/lang/AutoCloseable.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Flushable.class] [loading /modules/java.base/java/io/Flushable.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/IOException.class] [loading /modules/java.base/java/io/IOException.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Deprecated.class] [loading /modules/java.base/java/lang/Deprecated.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Retention.class] [loading /modules/java.base/java/lang/annotation/Retention.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Target.class] [loading /modules/java.base/java/lang/annotation/Target.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/ElementType.class] [loading /modules/java.base/java/lang/annotation/ElementType.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Annotation.class] [loading /modules/java.base/java/lang/annotation/Annotation.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Override.class] [loading /modules/java.base/java/lang/Override.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/SuppressWarnings.class] [loading /modules/java.base/java/lang/SuppressWarnings.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Byte.class] [loading /modules/java.base/java/lang/Byte.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Character.class] [loading /modules/java.base/java/lang/Character.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Short.class] [loading /modules/java.base/java/lang/Short.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Long.class] [loading /modules/java.base/java/lang/Long.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Float.class] [loading /modules/java.base/java/lang/Float.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Void.class] [loading /modules/java.base/java/lang/Void.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AssertionError.class] [loading /modules/java.base/java/lang/AssertionError.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser$ParsedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser$ParsedArgument.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@484089ed, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [done in 808 ms] [done in 808 ms] Running Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql.rowset/module-info.class] Gradle suite > Gradle test > org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest.testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false) STANDARD_OUT [loading /modules/java.sql.rowset/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.zipfs/module-info.class] [loading /modules/jdk.zipfs/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management/module-info.class] [loading /modules/jdk.management/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.rmi/module-info.class] [loading /modules/java.rmi/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.dynalink/module-info.class] [loading /modules/jdk.dynalink/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.sctp/module-info.class] [loading /modules/jdk.sctp/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jsobject/module-info.class] [loading /modules/jdk.jsobject/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jstatd/module-info.class] [loading /modules/jdk.jstatd/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.transaction.xa/module-info.class] [loading /modules/java.transaction.xa/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.opt/module-info.class] [loading /modules/jdk.internal.opt/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.se/module-info.class] [loading /modules/java.se/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.dns/module-info.class] [loading /modules/jdk.naming.dns/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.sasl/module-info.class] [loading /modules/java.security.sasl/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.xml.dom/module-info.class] [loading /modules/jdk.xml.dom/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.le/module-info.class] [loading /modules/jdk.internal.le/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported/module-info.class] [loading /modules/jdk.unsupported/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.instrument/module-info.class] [loading /modules/java.instrument/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.net.http/module-info.class] [loading /modules/java.net.http/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.httpserver/module-info.class] [loading /modules/jdk.httpserver/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.javadoc/module-info.class] [loading /modules/jdk.javadoc/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.agent/module-info.class] [loading /modules/jdk.management.agent/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.compiler/module-info.class] [loading /modules/java.compiler/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn.shell/module-info.class] [loading /modules/jdk.scripting.nashorn.shell/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported.desktop/module-info.class] [loading /modules/jdk.unsupported.desktop/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.ec/module-info.class] [loading /modules/jdk.crypto.ec/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdeps/module-info.class] [loading /modules/jdk.jdeps/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.logging/module-info.class] [loading /modules/java.logging/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.cryptoki/module-info.class] [loading /modules/jdk.crypto.cryptoki/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.attach/module-info.class] [loading /modules/jdk.attach/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql/module-info.class] [loading /modules/java.sql/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdwp.agent/module-info.class] [loading /modules/jdk.jdwp.agent/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.rmi/module-info.class] [loading /modules/jdk.naming.rmi/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.localedata/module-info.class] [loading /modules/jdk.localedata/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.auth/module-info.class] [loading /modules/jdk.security.auth/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler.management/module-info.class] [loading /modules/jdk.internal.vm.compiler.management/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.ed/module-info.class] [loading /modules/jdk.internal.ed/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jlink/module-info.class] [loading /modules/jdk.jlink/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.jgss/module-info.class] [loading /modules/java.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/module-info.class] [loading /modules/java.base/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.desktop/module-info.class] [loading /modules/java.desktop/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.smartcardio/module-info.class] [loading /modules/java.smartcardio/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jfr/module-info.class] [loading /modules/jdk.jfr/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jconsole/module-info.class] [loading /modules/jdk.jconsole/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler/module-info.class] [loading /modules/jdk.internal.vm.compiler/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.jgss/module-info.class] [loading /modules/jdk.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.jvmstat/module-info.class] [loading /modules/jdk.internal.jvmstat/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.rmic/module-info.class] [loading /modules/jdk.rmic/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml.crypto/module-info.class] [loading /modules/java.xml.crypto/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.scripting/module-info.class] [loading /modules/java.scripting/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.prefs/module-info.class] [loading /modules/java.prefs/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml/module-info.class] [loading /modules/java.xml/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.editpad/module-info.class] [loading /modules/jdk.editpad/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management/module-info.class] [loading /modules/java.management/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.naming/module-info.class] [loading /modules/java.naming/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.charsets/module-info.class] [loading /modules/jdk.charsets/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management.rmi/module-info.class] [loading /modules/java.management.rmi/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jshell/module-info.class] [loading /modules/jdk.jshell/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.datatransfer/module-info.class] [loading /modules/java.datatransfer/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jartool/module-info.class] [loading /modules/jdk.jartool/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.aot/module-info.class] [loading /modules/jdk.aot/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.pack/module-info.class] [loading /modules/jdk.pack/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.compiler/module-info.class] [loading /modules/jdk.compiler/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.hotspot.agent/module-info.class] [loading /modules/jdk.hotspot.agent/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn/module-info.class] [loading /modules/jdk.scripting.nashorn/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdi/module-info.class] [loading /modules/jdk.jdi/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.net/module-info.class] [loading /modules/jdk.net/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.jfr/module-info.class] [loading /modules/jdk.management.jfr/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jcmd/module-info.class] [loading /modules/jdk.jcmd/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.accessibility/module-info.class] [loading /modules/jdk.accessibility/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.ldap/module-info.class] [loading /modules/jdk.naming.ldap/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.ci/module-info.class] [loading /modules/jdk.internal.vm.ci/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.help.testinputs... Loading source files for package org.broadinstitute.barclay.help.testinputs... Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.argparser... Loading source files for package org.broadinstitute.barclay.argparser... Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 21ms] [parsing completed 21ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 11ms] [parsing completed 11ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 3ms] [parsing completed 3ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 10ms] [parsing completed 10ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 3ms] [parsing completed 3ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Constructing Javadoc information... Constructing Javadoc information... Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for source files: src/test/java] [search path for source files: src/test/java] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-2.1.0/build/classes/java/test,/build/barclay-2.1.0/build/resources/test,/build/barclay-2.1.0/build/classes/java/main,/build/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar] [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-2.1.0/build/classes/java/test,/build/barclay-2.1.0/build/resources/test,/build/barclay-2.1.0/build/classes/java/main,/build/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/File.class] [loading /modules/java.base/java/io/File.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Object.class] [loading /modules/java.base/java/lang/Object.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/String.class] [loading /modules/java.base/java/lang/String.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/List.class] [loading /modules/java.base/java/util/List.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Double.class] [loading /modules/java.base/java/lang/Double.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/ArrayList.class] [loading /modules/java.base/java/util/ArrayList.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Enum.class] [loading /modules/java.base/java/lang/Enum.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Comparable.class] [loading /modules/java.base/java/lang/Comparable.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Serializable.class] [loading /modules/java.base/java/io/Serializable.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/ByteArrayOutputStream.class] [loading /modules/java.base/java/io/ByteArrayOutputStream.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintStream.class] [loading /modules/java.base/java/io/PrintStream.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintWriter.class] [loading /modules/java.base/java/io/PrintWriter.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/reflect/Field.class] [loading /modules/java.base/java/lang/reflect/Field.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/function/Consumer.class] [loading /modules/java.base/java/util/function/Consumer.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Exception.class] [loading /modules/java.base/java/lang/Exception.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Runnable.class] [loading /modules/java.base/java/lang/Runnable.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Integer.class] [loading /modules/java.base/java/lang/Integer.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Boolean.class] [loading /modules/java.base/java/lang/Boolean.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Class.class] [loading /modules/java.base/java/lang/Class.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Map.class] [loading /modules/java.base/java/util/Map.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Set.class] [loading /modules/java.base/java/util/Set.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/IllegalAccessException.class] [loading /modules/java.base/java/lang/IllegalAccessException.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/InstantiationException.class] [loading /modules/java.base/java/lang/InstantiationException.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/HashSet.class] [loading /modules/java.base/java/util/HashSet.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Collection.class] [loading /modules/java.base/java/util/Collection.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/OutputStream.class] [loading /modules/java.base/java/io/OutputStream.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Closeable.class] [loading /modules/java.base/java/io/Closeable.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AutoCloseable.class] [loading /modules/java.base/java/lang/AutoCloseable.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Flushable.class] [loading /modules/java.base/java/io/Flushable.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/IOException.class] [loading /modules/java.base/java/io/IOException.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Deprecated.class] [loading /modules/java.base/java/lang/Deprecated.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Retention.class] [loading /modules/java.base/java/lang/annotation/Retention.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Target.class] [loading /modules/java.base/java/lang/annotation/Target.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/ElementType.class] [loading /modules/java.base/java/lang/annotation/ElementType.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Annotation.class] [loading /modules/java.base/java/lang/annotation/Annotation.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Override.class] [loading /modules/java.base/java/lang/Override.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/SuppressWarnings.class] [loading /modules/java.base/java/lang/SuppressWarnings.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Byte.class] [loading /modules/java.base/java/lang/Byte.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Character.class] [loading /modules/java.base/java/lang/Character.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Short.class] [loading /modules/java.base/java/lang/Short.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Long.class] [loading /modules/java.base/java/lang/Long.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Float.class] [loading /modules/java.base/java/lang/Float.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Void.class] [loading /modules/java.base/java/lang/Void.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AssertionError.class] [loading /modules/java.base/java/lang/AssertionError.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser$ParsedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser$ParsedArgument.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@12a0aaff, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [done in 473 ms] [done in 473 ms] Running Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.opt/module-info.class] Gradle suite > Gradle test > org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest.testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true) STANDARD_OUT [loading /modules/jdk.internal.opt/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.sasl/module-info.class] [loading /modules/java.security.sasl/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/module-info.class] [loading /modules/java.base/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn.shell/module-info.class] [loading /modules/jdk.scripting.nashorn.shell/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.jvmstat/module-info.class] [loading /modules/jdk.internal.jvmstat/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql.rowset/module-info.class] [loading /modules/java.sql.rowset/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.attach/module-info.class] [loading /modules/jdk.attach/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.editpad/module-info.class] [loading /modules/jdk.editpad/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.naming/module-info.class] [loading /modules/java.naming/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.cryptoki/module-info.class] [loading /modules/jdk.crypto.cryptoki/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.aot/module-info.class] [loading /modules/jdk.aot/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.se/module-info.class] [loading /modules/java.se/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.rmic/module-info.class] [loading /modules/jdk.rmic/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.ec/module-info.class] [loading /modules/jdk.crypto.ec/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.jfr/module-info.class] [loading /modules/jdk.management.jfr/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jartool/module-info.class] [loading /modules/jdk.jartool/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.desktop/module-info.class] [loading /modules/java.desktop/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.ed/module-info.class] [loading /modules/jdk.internal.ed/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.dns/module-info.class] [loading /modules/jdk.naming.dns/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdeps/module-info.class] [loading /modules/jdk.jdeps/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.javadoc/module-info.class] [loading /modules/jdk.javadoc/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported.desktop/module-info.class] [loading /modules/jdk.unsupported.desktop/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.zipfs/module-info.class] [loading /modules/jdk.zipfs/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jshell/module-info.class] [loading /modules/jdk.jshell/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jstatd/module-info.class] [loading /modules/jdk.jstatd/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.auth/module-info.class] [loading /modules/jdk.security.auth/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.ci/module-info.class] [loading /modules/jdk.internal.vm.ci/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml.crypto/module-info.class] [loading /modules/java.xml.crypto/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.charsets/module-info.class] [loading /modules/jdk.charsets/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.jgss/module-info.class] [loading /modules/jdk.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler/module-info.class] [loading /modules/jdk.internal.vm.compiler/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.datatransfer/module-info.class] [loading /modules/java.datatransfer/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdi/module-info.class] [loading /modules/jdk.jdi/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.ldap/module-info.class] [loading /modules/jdk.naming.ldap/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.logging/module-info.class] [loading /modules/java.logging/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.accessibility/module-info.class] [loading /modules/jdk.accessibility/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.prefs/module-info.class] [loading /modules/java.prefs/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.xml.dom/module-info.class] [loading /modules/jdk.xml.dom/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jconsole/module-info.class] [loading /modules/jdk.jconsole/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler.management/module-info.class] [loading /modules/jdk.internal.vm.compiler.management/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.hotspot.agent/module-info.class] [loading /modules/jdk.hotspot.agent/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.net/module-info.class] [loading /modules/jdk.net/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.scripting/module-info.class] [loading /modules/java.scripting/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.sctp/module-info.class] [loading /modules/jdk.sctp/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management/module-info.class] [loading /modules/jdk.management/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jlink/module-info.class] [loading /modules/jdk.jlink/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.smartcardio/module-info.class] [loading /modules/java.smartcardio/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.net.http/module-info.class] [loading /modules/java.net.http/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.pack/module-info.class] [loading /modules/jdk.pack/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jfr/module-info.class] [loading /modules/jdk.jfr/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.jgss/module-info.class] [loading /modules/java.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.localedata/module-info.class] [loading /modules/jdk.localedata/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml/module-info.class] [loading /modules/java.xml/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.instrument/module-info.class] [loading /modules/java.instrument/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management.rmi/module-info.class] [loading /modules/java.management.rmi/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.compiler/module-info.class] [loading /modules/java.compiler/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported/module-info.class] [loading /modules/jdk.unsupported/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jsobject/module-info.class] [loading /modules/jdk.jsobject/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.rmi/module-info.class] [loading /modules/jdk.naming.rmi/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.rmi/module-info.class] [loading /modules/java.rmi/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdwp.agent/module-info.class] [loading /modules/jdk.jdwp.agent/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management/module-info.class] [loading /modules/java.management/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.agent/module-info.class] [loading /modules/jdk.management.agent/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.dynalink/module-info.class] [loading /modules/jdk.dynalink/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.compiler/module-info.class] [loading /modules/jdk.compiler/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jcmd/module-info.class] [loading /modules/jdk.jcmd/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.le/module-info.class] [loading /modules/jdk.internal.le/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn/module-info.class] [loading /modules/jdk.scripting.nashorn/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql/module-info.class] [loading /modules/java.sql/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.httpserver/module-info.class] [loading /modules/jdk.httpserver/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.transaction.xa/module-info.class] [loading /modules/java.transaction.xa/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.help.testinputs... Loading source files for package org.broadinstitute.barclay.help.testinputs... Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.argparser... Loading source files for package org.broadinstitute.barclay.argparser... Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 8ms] [parsing completed 8ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 2ms] [parsing completed 2ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 6ms] [parsing completed 6ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Constructing Javadoc information... Constructing Javadoc information... Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for source files: src/test/java] [search path for source files: src/test/java] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-2.1.0/build/classes/java/test,/build/barclay-2.1.0/build/resources/test,/build/barclay-2.1.0/build/classes/java/main,/build/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar] [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-2.1.0/build/classes/java/test,/build/barclay-2.1.0/build/resources/test,/build/barclay-2.1.0/build/classes/java/main,/build/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/File.class] [loading /modules/java.base/java/io/File.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Object.class] [loading /modules/java.base/java/lang/Object.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/String.class] [loading /modules/java.base/java/lang/String.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/List.class] [loading /modules/java.base/java/util/List.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Double.class] [loading /modules/java.base/java/lang/Double.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/ArrayList.class] [loading /modules/java.base/java/util/ArrayList.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Enum.class] [loading /modules/java.base/java/lang/Enum.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Comparable.class] [loading /modules/java.base/java/lang/Comparable.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Serializable.class] [loading /modules/java.base/java/io/Serializable.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/ByteArrayOutputStream.class] [loading /modules/java.base/java/io/ByteArrayOutputStream.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintStream.class] [loading /modules/java.base/java/io/PrintStream.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintWriter.class] [loading /modules/java.base/java/io/PrintWriter.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/reflect/Field.class] [loading /modules/java.base/java/lang/reflect/Field.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/function/Consumer.class] [loading /modules/java.base/java/util/function/Consumer.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Exception.class] [loading /modules/java.base/java/lang/Exception.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Runnable.class] [loading /modules/java.base/java/lang/Runnable.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Integer.class] [loading /modules/java.base/java/lang/Integer.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Boolean.class] [loading /modules/java.base/java/lang/Boolean.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Class.class] [loading /modules/java.base/java/lang/Class.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Map.class] [loading /modules/java.base/java/util/Map.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Set.class] [loading /modules/java.base/java/util/Set.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/IllegalAccessException.class] [loading /modules/java.base/java/lang/IllegalAccessException.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/InstantiationException.class] [loading /modules/java.base/java/lang/InstantiationException.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/HashSet.class] [loading /modules/java.base/java/util/HashSet.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Collection.class] [loading /modules/java.base/java/util/Collection.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/OutputStream.class] [loading /modules/java.base/java/io/OutputStream.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Closeable.class] [loading /modules/java.base/java/io/Closeable.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AutoCloseable.class] [loading /modules/java.base/java/lang/AutoCloseable.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Flushable.class] [loading /modules/java.base/java/io/Flushable.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/IOException.class] [loading /modules/java.base/java/io/IOException.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Deprecated.class] [loading /modules/java.base/java/lang/Deprecated.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Retention.class] [loading /modules/java.base/java/lang/annotation/Retention.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Target.class] [loading /modules/java.base/java/lang/annotation/Target.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/ElementType.class] [loading /modules/java.base/java/lang/annotation/ElementType.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Annotation.class] [loading /modules/java.base/java/lang/annotation/Annotation.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Override.class] [loading /modules/java.base/java/lang/Override.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/SuppressWarnings.class] [loading /modules/java.base/java/lang/SuppressWarnings.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Byte.class] [loading /modules/java.base/java/lang/Byte.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Character.class] [loading /modules/java.base/java/lang/Character.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Short.class] [loading /modules/java.base/java/lang/Short.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Long.class] [loading /modules/java.base/java/lang/Long.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Float.class] [loading /modules/java.base/java/lang/Float.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Void.class] [loading /modules/java.base/java/lang/Void.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AssertionError.class] [loading /modules/java.base/java/lang/AssertionError.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser$ParsedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser$ParsedArgument.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@24dabb24, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [done in 412 ms] [done in 412 ms] Running Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler.management/module-info.class] Gradle suite > Gradle test > org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest.testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true) STANDARD_OUT [loading /modules/jdk.internal.vm.compiler.management/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler/module-info.class] [loading /modules/jdk.internal.vm.compiler/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.transaction.xa/module-info.class] [loading /modules/java.transaction.xa/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jcmd/module-info.class] [loading /modules/jdk.jcmd/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.httpserver/module-info.class] [loading /modules/jdk.httpserver/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.sctp/module-info.class] [loading /modules/jdk.sctp/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.sasl/module-info.class] [loading /modules/java.security.sasl/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jstatd/module-info.class] [loading /modules/jdk.jstatd/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.ldap/module-info.class] [loading /modules/jdk.naming.ldap/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.instrument/module-info.class] [loading /modules/java.instrument/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.aot/module-info.class] [loading /modules/jdk.aot/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.logging/module-info.class] [loading /modules/java.logging/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jsobject/module-info.class] [loading /modules/jdk.jsobject/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn/module-info.class] [loading /modules/jdk.scripting.nashorn/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdi/module-info.class] [loading /modules/jdk.jdi/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jartool/module-info.class] [loading /modules/jdk.jartool/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.auth/module-info.class] [loading /modules/jdk.security.auth/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.ci/module-info.class] [loading /modules/jdk.internal.vm.ci/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml/module-info.class] [loading /modules/java.xml/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jshell/module-info.class] [loading /modules/jdk.jshell/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.zipfs/module-info.class] [loading /modules/jdk.zipfs/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.naming/module-info.class] [loading /modules/java.naming/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.rmi/module-info.class] [loading /modules/java.rmi/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.agent/module-info.class] [loading /modules/jdk.management.agent/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.net/module-info.class] [loading /modules/jdk.net/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.cryptoki/module-info.class] [loading /modules/jdk.crypto.cryptoki/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.le/module-info.class] [loading /modules/jdk.internal.le/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.scripting/module-info.class] [loading /modules/java.scripting/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.jgss/module-info.class] [loading /modules/jdk.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.xml.dom/module-info.class] [loading /modules/jdk.xml.dom/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.jvmstat/module-info.class] [loading /modules/jdk.internal.jvmstat/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.pack/module-info.class] [loading /modules/jdk.pack/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.datatransfer/module-info.class] [loading /modules/java.datatransfer/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.jfr/module-info.class] [loading /modules/jdk.management.jfr/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/module-info.class] [loading /modules/java.base/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.ed/module-info.class] [loading /modules/jdk.internal.ed/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.javadoc/module-info.class] [loading /modules/jdk.javadoc/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.ec/module-info.class] [loading /modules/jdk.crypto.ec/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.localedata/module-info.class] [loading /modules/jdk.localedata/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.net.http/module-info.class] [loading /modules/java.net.http/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management.rmi/module-info.class] [loading /modules/java.management.rmi/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.se/module-info.class] [loading /modules/java.se/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jfr/module-info.class] [loading /modules/jdk.jfr/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported.desktop/module-info.class] [loading /modules/jdk.unsupported.desktop/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jlink/module-info.class] [loading /modules/jdk.jlink/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql.rowset/module-info.class] [loading /modules/java.sql.rowset/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml.crypto/module-info.class] [loading /modules/java.xml.crypto/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdeps/module-info.class] [loading /modules/jdk.jdeps/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdwp.agent/module-info.class] [loading /modules/jdk.jdwp.agent/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.rmic/module-info.class] [loading /modules/jdk.rmic/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management/module-info.class] [loading /modules/jdk.management/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn.shell/module-info.class] [loading /modules/jdk.scripting.nashorn.shell/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.rmi/module-info.class] [loading /modules/jdk.naming.rmi/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.compiler/module-info.class] [loading /modules/jdk.compiler/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jconsole/module-info.class] [loading /modules/jdk.jconsole/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.dynalink/module-info.class] [loading /modules/jdk.dynalink/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.opt/module-info.class] [loading /modules/jdk.internal.opt/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.editpad/module-info.class] [loading /modules/jdk.editpad/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.desktop/module-info.class] [loading /modules/java.desktop/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.hotspot.agent/module-info.class] [loading /modules/jdk.hotspot.agent/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.smartcardio/module-info.class] [loading /modules/java.smartcardio/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.charsets/module-info.class] [loading /modules/jdk.charsets/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.attach/module-info.class] [loading /modules/jdk.attach/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported/module-info.class] [loading /modules/jdk.unsupported/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.dns/module-info.class] [loading /modules/jdk.naming.dns/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql/module-info.class] [loading /modules/java.sql/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.prefs/module-info.class] [loading /modules/java.prefs/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.compiler/module-info.class] [loading /modules/java.compiler/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.jgss/module-info.class] [loading /modules/java.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.accessibility/module-info.class] [loading /modules/jdk.accessibility/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management/module-info.class] [loading /modules/java.management/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.help.testinputs... Loading source files for package org.broadinstitute.barclay.help.testinputs... Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.argparser... Loading source files for package org.broadinstitute.barclay.argparser... Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 7ms] [parsing completed 7ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 2ms] [parsing completed 2ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 6ms] [parsing completed 6ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 2ms] [parsing completed 2ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Constructing Javadoc information... Constructing Javadoc information... Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for source files: src/test/java] [search path for source files: src/test/java] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-2.1.0/build/classes/java/test,/build/barclay-2.1.0/build/resources/test,/build/barclay-2.1.0/build/classes/java/main,/build/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar] [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-2.1.0/build/classes/java/test,/build/barclay-2.1.0/build/resources/test,/build/barclay-2.1.0/build/classes/java/main,/build/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/File.class] [loading /modules/java.base/java/io/File.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Object.class] [loading /modules/java.base/java/lang/Object.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/String.class] [loading /modules/java.base/java/lang/String.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/List.class] [loading /modules/java.base/java/util/List.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Double.class] [loading /modules/java.base/java/lang/Double.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/ArrayList.class] [loading /modules/java.base/java/util/ArrayList.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Enum.class] [loading /modules/java.base/java/lang/Enum.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Comparable.class] [loading /modules/java.base/java/lang/Comparable.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Serializable.class] [loading /modules/java.base/java/io/Serializable.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/ByteArrayOutputStream.class] [loading /modules/java.base/java/io/ByteArrayOutputStream.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintStream.class] [loading /modules/java.base/java/io/PrintStream.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintWriter.class] [loading /modules/java.base/java/io/PrintWriter.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/reflect/Field.class] [loading /modules/java.base/java/lang/reflect/Field.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/function/Consumer.class] [loading /modules/java.base/java/util/function/Consumer.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Exception.class] [loading /modules/java.base/java/lang/Exception.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Runnable.class] [loading /modules/java.base/java/lang/Runnable.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Integer.class] [loading /modules/java.base/java/lang/Integer.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Boolean.class] [loading /modules/java.base/java/lang/Boolean.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Class.class] [loading /modules/java.base/java/lang/Class.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Map.class] [loading /modules/java.base/java/util/Map.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Set.class] [loading /modules/java.base/java/util/Set.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/IllegalAccessException.class] [loading /modules/java.base/java/lang/IllegalAccessException.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/InstantiationException.class] [loading /modules/java.base/java/lang/InstantiationException.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/HashSet.class] [loading /modules/java.base/java/util/HashSet.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Collection.class] [loading /modules/java.base/java/util/Collection.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/OutputStream.class] [loading /modules/java.base/java/io/OutputStream.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Closeable.class] [loading /modules/java.base/java/io/Closeable.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AutoCloseable.class] [loading /modules/java.base/java/lang/AutoCloseable.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Flushable.class] [loading /modules/java.base/java/io/Flushable.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/IOException.class] [loading /modules/java.base/java/io/IOException.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Deprecated.class] [loading /modules/java.base/java/lang/Deprecated.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Retention.class] [loading /modules/java.base/java/lang/annotation/Retention.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Target.class] [loading /modules/java.base/java/lang/annotation/Target.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/ElementType.class] [loading /modules/java.base/java/lang/annotation/ElementType.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Annotation.class] [loading /modules/java.base/java/lang/annotation/Annotation.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Override.class] [loading /modules/java.base/java/lang/Override.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/SuppressWarnings.class] [loading /modules/java.base/java/lang/SuppressWarnings.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Byte.class] [loading /modules/java.base/java/lang/Byte.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Character.class] [loading /modules/java.base/java/lang/Character.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Short.class] [loading /modules/java.base/java/lang/Short.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Long.class] [loading /modules/java.base/java/lang/Long.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Float.class] [loading /modules/java.base/java/lang/Float.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Void.class] [loading /modules/java.base/java/lang/Void.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AssertionError.class] [loading /modules/java.base/java/lang/AssertionError.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser$ParsedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser$ParsedArgument.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] [loading /build/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] [loading /build/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@237ccfb1, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [done in 336 ms] [done in 336 ms] Running Test: Test method testAddToDefaultValuesListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testArgumentCollectionFlat(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testArgumentCollectionNested(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testArgumentCollectionNoReferenceProvidedForOptional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'REFERENCE_SEQUENCE' is required. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testArgumentCollectionNoReferenceProvidedForRequired STANDARD_ERROR ERROR: Option 'REFERENCE_SEQUENCE' is required. Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: ToolWithRequiredReference [options] USAGE: ToolWithRequiredReference [options] Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: REFERENCE_SEQUENCE=File A reference is required Required. REFERENCE_SEQUENCE=File A reference is required Required. Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testArgumentCollectionWithReferenceProvidedForOptional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testArgumentCollectionWithReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: 'HiMom' is not a valid value for FrobnicationFlavor. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testBadEnumValue STANDARD_ERROR ERROR: 'HiMom' is not a valid value for FrobnicationFlavor. Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptions [options] USAGE: FrobnicateOptions [options] Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: options, unrecognized options are ignored. A single-valued option set in an options file options, unrecognized options are ignored. A single-valued option set in an options file Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: may be overridden by a subsequent command-line option. A line starting with '#' is may be overridden by a subsequent command-line option. A line starting with '#' is Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: considered a comment. Required. considered a comment. Required. Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Problem constructing Integer from the string 'ABC'. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testBadValue STANDARD_ERROR ERROR: Problem constructing Integer from the string 'ABC'. Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptions [options] USAGE: FrobnicateOptions [options] Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: options, unrecognized options are ignored. A single-valued option set in an options file options, unrecognized options are ignored. A single-valued option set in an options file Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: may be overridden by a subsequent command-line option. A line starting with '#' is may be overridden by a subsequent command-line option. A line starting with '#' is Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: considered a comment. Required. considered a comment. Required. Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testBetaExperimentalMutex(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testBetaFeatureUsage(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testClearDefaultValuesFromListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testClearDefaultValuesFromListOptionAndAddNew(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testCollectionThatCannotBeAutoInitialized(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testDefault(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testExperimentalFeatureUsage(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testForIdenticalShortName(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHTMLConverter[0](hello, hello)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHTMLConverter[1](, )(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHTMLConverter[2](hibye, hi bye)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHTMLConverter[3](hibye, hibye)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHTMLConverter[4](hi
  • bye, hi - bye)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHTMLConverter[5](hibye, hibye)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHTMLConverter[6](
    , 

)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest)
Running Test: Test method testHTMLConverter[7]( string,  string (http://go.here.org))(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest)
Running Test: Test method testHTMLConverter[8]( string,  string (http://go.here.org))(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest)
Running Test: Test method testHTMLConverter[9](< a href="http://go.here.org"> string,  string (http://go.here.org))(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest)
Running Test: Test method testHTMLConverter[10](hi
    • bye, hi bye)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHTMLConverter[11](Using read outputs from high throughput sequencing (HTS) technologies, this tool provides metrics regarding the quality of read alignments to a reference sequence, as well as the proportion of the reads that passed machine signal-to-noise threshold quality filters (Illumina).

    Usage example:

        java -jar picard.jar CollectAlignmentSummaryMetrics \
              R=reference_sequence.fasta \
              I=input.bam \
              O=output.txt
    Please see     the AlignmentSummaryMetrics documentation for detailed explanations of each metric.

    Additional information about Illumina's quality filters can be found in the following documents on the Illumina website:
    , Using read outputs from high throughput sequencing (HTS) technologies, this tool provides metrics regarding the quality of read alignments to a reference sequence, as well as the proportion of the reads that passed machine signal-to-noise threshold quality filters (Illumina). Usage example: java -jar picard.jar CollectAlignmentSummaryMetrics \ R=reference_sequence.fasta \ I=input.bam \ O=output.txt Please see the AlignmentSummaryMetrics documentation (http://broadinstitute.github.io/picard/picard-metric-definitions.html#AlignmentSummaryMetrics) for detailed explanations of each metric. Additional information about Illumina's quality filters can be found in the following documents on the Illumina website: - hiseq-x-percent-pf-technical-note (http://support.illumina.com/content/dam/illumina-marketing/documents/products/technotes/hiseq-x-percent-pf-technical-note-770-2014-043.pdf) - hiseq-x-system-guide (http://support.illumina.com/content/dam/illumina-support/documents/documentation/system_documentation/hiseqx/hiseq-x-system-guide-15050091-d.pdf) )(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHtmlUnescape[0](<, <)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHtmlUnescape[1](x)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHtmlUnescape[4]( x y< x , x<y y< x )(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testIgnoringBoundaries[0](-15)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testIgnoringBoundaries[1](-5)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testIgnoringBoundaries[2](-2)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testIgnoringBoundaries[3](1)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testIgnoringBoundaries[4](0)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testIgnoringBoundaries[5](2)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testIgnoringBoundaries[6](5)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testIgnoringBoundaries[7](10)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testLongPreamble(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'FROBNICATION_FLAVOR' is required. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMissingRequiredArgument STANDARD_ERROR ERROR: Option 'FROBNICATION_FLAVOR' is required. Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptions [options] USAGE: FrobnicateOptions [options] Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testMutex[0](pass, [Ljava.lang.String;@783fc8b9, true)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' is required unless any of [Y, Z, M, N] are specified. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[1](no args, [Ljava.lang.String;@7d21d992, false) STANDARD_ERROR ERROR: Option 'A' is required unless any of [Y, Z, M, N] are specified. Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Test: Test method testMutex[1](no args, [Ljava.lang.String;@7d21d992, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'B' is required unless any of [Y, Z, M, N] are specified. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false) STANDARD_ERROR ERROR: Option 'B' is required unless any of [Y, Z, M, N] are specified. Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@4a3f39b5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[3](mutex, [Ljava.lang.String;@46de6414, false) STANDARD_ERROR ERROR: Option 'A' cannot be used in conjunction with option(s) Y Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Test: Test method testMutex[3](mutex, [Ljava.lang.String;@46de6414, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y Z M N Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false) STANDARD_ERROR ERROR: Option 'A' cannot be used in conjunction with option(s) Y Z M N Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@63b078ae, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testNonASCIIAccept(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testNonASCIIReject(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testNonAsciiAssertion(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testNonAsciiConverted(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'SHMIGGLE_TYPE' must be specified at least 1 times. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testNotEnoughOfListOption STANDARD_ERROR ERROR: Option 'SHMIGGLE_TYPE' must be specified at least 1 times. Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptions [options] USAGE: FrobnicateOptions [options] Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: At least 2 positional arguments must be specified. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testNotEnoughPositional STANDARD_ERROR ERROR: At least 2 positional arguments must be specified. Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptions [options] USAGE: FrobnicateOptions [options] Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: non-null value must be provided for 'FROBNICATION_THRESHOLD'. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testNullValue STANDARD_ERROR ERROR: non-null value must be provided for 'FROBNICATION_THRESHOLD'. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptionsWithNullList [options] USAGE: FrobnicateOptionsWithNullList [options] Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Required. T=Integer Frobnication threshold setting. Required. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Default value: BAR. This option can be set to 'null' to clear the Undocumented option Default value: BAR. This option can be set to 'null' to clear the Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: default value. Possible values: {FOO, BAR, BAZ} default value. Possible values: {FOO, BAR, BAZ} Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option must be specified no more than 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option must be specified no more than 3 Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Default value: false. This option can be set to 'null' to clear the TRUTHINESS=Boolean Undocumented option Default value: false. This option can be set to 'null' to clear the Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: default value. Possible values: {true, false} default value. Possible values: {true, false} Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: options, unrecognized options are ignored. A single-valued option set in an options file options, unrecognized options are ignored. A single-valued option set in an options file Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: may be overridden by a subsequent command-line option. A line starting with '#' is may be overridden by a subsequent command-line option. A line starting with '#' is Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: considered a comment. Required. considered a comment. Required. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: non-null value must be provided for 'FROBNICATION_THRESHOLD'. ERROR: non-null value must be provided for 'FROBNICATION_THRESHOLD'. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptionsWithNullList [options] USAGE: FrobnicateOptionsWithNullList [options] Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Required. T=Integer Frobnication threshold setting. Required. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Default value: BAR. This option can be set to 'null' to clear the Undocumented option Default value: BAR. This option can be set to 'null' to clear the Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: default value. Possible values: {FOO, BAR, BAZ} default value. Possible values: {FOO, BAR, BAZ} Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option must be specified no more than 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option must be specified no more than 3 Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Default value: false. This option can be set to 'null' to clear the TRUTHINESS=Boolean Undocumented option Default value: false. This option can be set to 'null' to clear the Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: default value. Possible values: {true, false} default value. Possible values: {true, false} Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: options, unrecognized options are ignored. A single-valued option set in an options file options, unrecognized options are ignored. A single-valued option set in an options file Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: may be overridden by a subsequent command-line option. A line starting with '#' is may be overridden by a subsequent command-line option. A line starting with '#' is Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: considered a comment. Required. considered a comment. Required. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testOptionDefinitionCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'FROBNICATION_FLAVOR' cannot be specified more than once. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testOptionUseCaseClash STANDARD_ERROR ERROR: Option 'FROBNICATION_FLAVOR' cannot be specified more than once. Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptions [options] USAGE: FrobnicateOptions [options] Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: options, unrecognized options are ignored. A single-valued option set in an options file options, unrecognized options are ignored. A single-valued option set in an options file Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: may be overridden by a subsequent command-line option. A line starting with '#' is may be overridden by a subsequent command-line option. A line starting with '#' is Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: considered a comment. Required. considered a comment. Required. Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testOptionsFile(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'T' cannot be specified more than once. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testOptionsFileWithDisallowedOverride STANDARD_ERROR ERROR: Option 'T' cannot be specified more than once. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptions [options] USAGE: FrobnicateOptions [options] Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: options, unrecognized options are ignored. A single-valued option set in an options file options, unrecognized options are ignored. A single-valued option set in an options file Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: may be overridden by a subsequent command-line option. A line starting with '#' is may be overridden by a subsequent command-line option. A line starting with '#' is Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: considered a comment. Required. considered a comment. Required. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptions [options] USAGE: FrobnicateOptions [options] Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: options, unrecognized options are ignored. A single-valued option set in an options file options, unrecognized options are ignored. A single-valued option set in an options file Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: may be overridden by a subsequent command-line option. A line starting with '#' is may be overridden by a subsequent command-line option. A line starting with '#' is Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: considered a comment. Required. considered a comment. Required. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testPositive(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testPositiveTerminalEqualSign(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testPositiveWithSpaces(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testPositiveWithoutPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'SHMIGGLE_TYPE' cannot be used more than 3 times. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testTooManyListOption STANDARD_ERROR ERROR: Option 'SHMIGGLE_TYPE' cannot be used more than 3 times. Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptions [options] USAGE: FrobnicateOptions [options] Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: options, unrecognized options are ignored. A single-valued option set in an options file options, unrecognized options are ignored. A single-valued option set in an options file Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: may be overridden by a subsequent command-line option. A line starting with '#' is may be overridden by a subsequent command-line option. A line starting with '#' is Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: considered a comment. Required. considered a comment. Required. Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: No more than 2 positional arguments may be specified on the command line. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testTooManyPositional STANDARD_ERROR ERROR: No more than 2 positional arguments may be specified on the command line. Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptions [options] USAGE: FrobnicateOptions [options] Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Invalid argument 'positional'. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testUnexpectedPositional STANDARD_ERROR ERROR: Invalid argument 'positional'. Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: OptionsWithoutPositional [options] USAGE: OptionsWithoutPositional [options] Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: framistat [options] Usage: framistat [options] Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Compute the plebnick of the freebozzle. Compute the plebnick of the freebozzle. Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testUninitializedCollections(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testUsage(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testUsageWithDefault(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testUsageWithoutPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testUsageWithoutPositionalWithDefault(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method recognizedValues(org.broadinstitute.barclay.argparser.StrictBooleanConverterTest) Running Test: Test method unrecognizedValues(org.broadinstitute.barclay.argparser.StrictBooleanConverterTest) Running Test: Test method testBadTaggedArguments[0]([Ljava.lang.String;@2a5d7b2e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[1]([Ljava.lang.String;@7883777)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[2]([Ljava.lang.String;@6ce0b92f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[3]([Ljava.lang.String;@4b398cc0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[4]([Ljava.lang.String;@4f9287c3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[5]([Ljava.lang.String;@4a9fc3de)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[6]([Ljava.lang.String;@24503811)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[7]([Ljava.lang.String;@651ec330)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[8]([Ljava.lang.String;@7eea51c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[9]([Ljava.lang.String;@602e59f4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[10]([Ljava.lang.String;@231130ed)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[11]([Ljava.lang.String;@75099380)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[12]([Ljava.lang.String;@6c8e2082)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[13]([Ljava.lang.String;@7584182b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[14]([Ljava.lang.String;@39c7d33c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[15]([Ljava.lang.String;@60ce3d96)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[16]([Ljava.lang.String;@1553247d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[17]([Ljava.lang.String;@59698662)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[18]([Ljava.lang.String;@552a5ef5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[19]([Ljava.lang.String;@51365f53)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[20]([Ljava.lang.String;@389f6d69)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[21]([Ljava.lang.String;@53980c0b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[22]([Ljava.lang.String;@5f3c7bf)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[23]([Ljava.lang.String;@1e2b8826)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[24]([Ljava.lang.String;@632d8691)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[25]([Ljava.lang.String;@2de7967f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[26]([Ljava.lang.String;@19f22686)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[27]([Ljava.lang.String;@1da590a4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[28]([Ljava.lang.String;@2226a793)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[29]([Ljava.lang.String;@1a07eceb)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[30]([Ljava.lang.String;@6499bc29)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[31]([Ljava.lang.String;@1ee655e0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[32]([Ljava.lang.String;@27bb3993)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[33]([Ljava.lang.String;@2b72d277)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[34]([Ljava.lang.String;@6d18a42c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[35]([Ljava.lang.String;@72b3e8c5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[36]([Ljava.lang.String;@2cf573a4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[37]([Ljava.lang.String;@441faf00)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[38]([Ljava.lang.String;@4457e86a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[39]([Ljava.lang.String;@4661e042)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[40]([Ljava.lang.String;@78326e18)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[41]([Ljava.lang.String;@2a82777d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[42]([Ljava.lang.String;@32e2504a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[43]([Ljava.lang.String;@3b3b5541)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[44]([Ljava.lang.String;@5559c235)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[45]([Ljava.lang.String;@18badf25)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[46]([Ljava.lang.String;@d710230)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[47]([Ljava.lang.String;@340c552c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[48]([Ljava.lang.String;@655816ec)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[49]([Ljava.lang.String;@15506f4c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[50]([Ljava.lang.String;@2167230b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[51]([Ljava.lang.String;@6c3f0c05)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[52]([Ljava.lang.String;@66c829b6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[53]([Ljava.lang.String;@26564507)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[54]([Ljava.lang.String;@2ef92682)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGetCommandLineTagged[0]([Ljava.lang.String;@1852e8b1, TaggableArguments --tFullName:tumor gcs://my/tumor.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGetCommandLineTagged[1]([Ljava.lang.String;@72768282, TaggableArguments --tFullName:tumor,training=true,truth=false tumor.bam --tFullName:normal,training=false,truth=true normal.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[0]([Ljava.lang.String;@58f7fac, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@425a6ae3, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@595e459a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[1]([Ljava.lang.String;@2047138f, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@504da164, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@3667ee25)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[2]([Ljava.lang.String;@2a483647, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@76146350, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@6905eb5e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[3]([Ljava.lang.String;@632d89d, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@23f36d2b, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1abe9987)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[4]([Ljava.lang.String;@71a36f9, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@11854c70, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1e46e33a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[5]([Ljava.lang.String;@4998446f, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@18c50960, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@70a1fc42)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[6]([Ljava.lang.String;@3993adcb, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@56202510, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5a120557)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[7]([Ljava.lang.String;@96676db, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@26e37476, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@39d8de52)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[8]([Ljava.lang.String;@3ccd63fa, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@75c68492, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@6cbce496)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[9]([Ljava.lang.String;@4a77039b, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@39c15feb, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@cb34bfa)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[10]([Ljava.lang.String;@18003461, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5a6d9416, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7615dae1)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[11]([Ljava.lang.String;@7d208e38, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@201653a3, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@30b465e2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[12]([Ljava.lang.String;@3e4c498a, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@4bb36ee0, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@662ecca2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[13]([Ljava.lang.String;@67375eb2, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@66eebda9, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5531e2c8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[14]([Ljava.lang.String;@26af0eb8, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@58917e99, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@333c38a4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[15]([Ljava.lang.String;@552aa36a, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@76abd541, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@614a1777)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[16]([Ljava.lang.String;@3cce75d3, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5815f954, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5f734b7b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[17]([Ljava.lang.String;@7fffd860, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1cb571d, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@2b220bc0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testMixedTagCollectionArgument(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testTaggedScalarArgument(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testNonNullDoesNotThrow(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testNonNullThrows(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testNonNullWithMessageReturn(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testNonNullWithMessageThrows(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[0](hello hello hello hello hello, hello hello hello hello hello, 12)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[1](hello hello hello hello hello, hello hello hello hello hello, 11)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[2](hello hello hello hello hello, hello hello hello hello hello, 10)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[3](hello hello hello hello hello, hello hello hello hello hello, 10)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[4](hello hello hello hello hello, hello hello hello hello hello, 20)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[5](hello hello hello hello hello , hello hello hello hello hello , 20)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[6](hello hello hello hello hello , hello hello hello hello hello , 20)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[7](, , 20)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[8]( , , 20)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[9]( , , 20)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[10](null, null, 20)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[11](hello, hello, 0)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[12](hello, hello, -1)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[13](a b c d e f g, a b c d e f g, 1)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[14](a b c d e f g, a b c d e f g, 0)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[15](a b c d e f g, a b c d e f g, -1)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[16](a b c d e f g, a b c d e f g, -1000)(org.broadinstitute.barclay.utils.UtilsUnitTest) Gradle Test Executor 1 finished executing tests. Results: SUCCESS (281 tests, 281 successes, 0 failures, 0 skipped) Finished generating test XML results (0.238 secs) into: /build/barclay-2.1.0/build/test-results/test Generating HTML test report... Finished generating test html results (0.209 secs) into: /build/barclay-2.1.0/build/reports/tests/test :test (Thread[Task worker for ':',5,main]) completed. Took 21.742 secs. BUILD SUCCESSFUL in 58s 5 actionable tasks: 3 executed, 2 up-to-date make[1]: Leaving directory '/build/barclay-2.1.0' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --buildsystem=gradle --with javahelper,jh_maven_repo_helper dh_testroot -O--buildsystem=gradle dh_prep -O--buildsystem=gradle rm -f -- debian/libbarclay-java.substvars rm -fr -- debian/.debhelper/generated/libbarclay-java/ debian/libbarclay-java/ debian/tmp/ dh_auto_install -O--buildsystem=gradle install -d /build/barclay-2.1.0/debian/libbarclay-java jh_installjavadoc -O--buildsystem=gradle dh_installdocs -O--buildsystem=gradle install -d debian/libbarclay-java/usr/share/doc/libbarclay-java install -d debian/.debhelper/generated/libbarclay-java install -p -m0644 debian/copyright debian/libbarclay-java/usr/share/doc/libbarclay-java/copyright dh_installchangelogs -O--buildsystem=gradle install -p -m0644 debian/changelog debian/libbarclay-java/usr/share/doc/libbarclay-java/changelog.Debian dh_installinit -O--buildsystem=gradle dh_perl -O--buildsystem=gradle dh_link -O--buildsystem=gradle jh_installlibs -O--buildsystem=gradle install -d debian/libbarclay-java/usr/share/java install -p -m0644 ./build/libs/barclay-2.1.0.jar debian/libbarclay-java/usr/share/java/barclay-2.1.0.jar rm -f debian/libbarclay-java/usr/share/java/barclay.jar ln -s barclay-2.1.0.jar debian/libbarclay-java/usr/share/java/barclay.jar jh_classpath -O--buildsystem=gradle jh_manifest -plibbarclay-java "--classpath=/usr/lib/jvm/default-java/lib/tools.jar /usr/share/java/joptsimple.jar /usr/share/java/log4j-api.jar /usr/share/java/log4j-core.jar /usr/share/java/commons-lang3.jar /usr/share/java/gson.jar" debian/libbarclay-java/usr/share/java/barclay.jar Updating symlinked /build/barclay-2.1.0/debian/libbarclay-java/usr/share/java/barclay-2.1.0.jar (via debian/libbarclay-java/usr/share/java/barclay.jar) Reading manifest from /build/barclay-2.1.0/debian/libbarclay-java/usr/share/java/barclay-2.1.0.jar Updating manifest in /build/barclay-2.1.0/debian/libbarclay-java/usr/share/java/barclay-2.1.0.jar jh_manifest -O--buildsystem=gradle find debian/libbarclay-java -name '*.jar' Found usr/share/java/barclay-2.1.0.jar Found symlink usr/share/java/barclay.jar Reading manifest from debian/libbarclay-java/usr/share/java/barclay-2.1.0.jar No update of debian/libbarclay-java/usr/share/java/barclay-2.1.0.jar required. jh_exec -O--buildsystem=gradle jh_depends -O--buildsystem=gradle Searching /build/barclay-2.1.0/debian/libbarclay-java for libbarclay-java Searching /build/barclay-2.1.0/debian/libbarclay-java/usr/share/java/barclay-2.1.0.jar Found Jars: /usr/lib/jvm/default-java/lib/tools.jar /usr/share/java/commons-lang3.jar /usr/share/java/gson.jar /usr/share/java/joptsimple.jar /usr/share/java/log4j-api.jar /usr/share/java/log4j-core.jar Checking: /build/barclay-2.1.0/debian/libbarclay-java/usr/lib/jvm/default-java/lib/tools.jar Checking: /build/barclay-2.1.0/debian/libbarclay-java/usr/share/java/commons-lang3.jar Checking: /build/barclay-2.1.0/debian/libbarclay-java/usr/share/java/gson.jar Checking: /build/barclay-2.1.0/debian/libbarclay-java/usr/share/java/joptsimple.jar Checking: /build/barclay-2.1.0/debian/libbarclay-java/usr/share/java/log4j-api.jar Checking: /build/barclay-2.1.0/debian/libbarclay-java/usr/share/java/log4j-core.jar Found Debs: libcommons-lang3-java libgoogle-gson-java libjoptsimple-java liblog4j2-java Adding substvars: java:Depends=libcommons-lang3-java, libgoogle-gson-java, libjoptsimple-java, liblog4j2-java java:Recommends= mh_installpoms -O--buildsystem=gradle mh_installpom --package=libbarclay-java --usj-name=barclay debian/pom-barclay.xml mh_cleanpom --package=libbarclay-java --rules=debian/maven.rules debian/pom-barclay.xml debian/.mh/pom.xml debian/.mh/pom.properties mv debian/.mh/pom.xml debian/.mh/barclay-debian.pom install -m 644 -D debian/.mh/barclay-2.1.0.pom debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/2.1.0/barclay-2.1.0.pom install -m 644 -D debian/.mh/barclay-debian.pom debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/debian/barclay-debian.pom mh_linkjars --skip-clean-poms -O--buildsystem=gradle mh_linkjar --package=libbarclay-java --skip-clean-pom debian/pom-barclay.xml /usr/share/java/barclay.jar dh_link -plibbarclay-java /usr/share/javabarclay.jar usr/share/maven-repo/org/broadinstitute/barclay/2.1.0/barclay-2.1.0.jar rm -f debian/libbarclay-java/usr/share/java/barclay.jar ln -s barclay-2.1.0.jar debian/libbarclay-java/usr/share/java/barclay.jar rm -f debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/2.1.0/barclay-2.1.0.jar ln -s ../../../../../java/barclay.jar debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/2.1.0/barclay-2.1.0.jar dh_link -plibbarclay-java /usr/share/javabarclay.jar usr/share/maven-repo/org/broadinstitute/barclay/debian/barclay-debian.jar rm -f debian/libbarclay-java/usr/share/java/barclay.jar ln -s barclay-2.1.0.jar debian/libbarclay-java/usr/share/java/barclay.jar rm -f debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/2.1.0/barclay-2.1.0.jar ln -s ../../../../../java/barclay.jar debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/2.1.0/barclay-2.1.0.jar rm -f debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/debian/barclay-debian.jar ln -s ../../../../../java/barclay.jar debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/debian/barclay-debian.jar dh_strip_nondeterminism -O--buildsystem=gradle Using 1547717872 as canonical time Normalizing debian/libbarclay-java/usr/share/java/barclay-2.1.0.jar using File::StripNondeterminism::handlers::jar dh_compress -O--buildsystem=gradle cd debian/libbarclay-java chmod a-x usr/share/doc/libbarclay-java/changelog.Debian gzip -9nf usr/share/doc/libbarclay-java/changelog.Debian cd '/build/barclay-2.1.0' dh_fixperms -O--buildsystem=gradle find debian/libbarclay-java -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libbarclay-java ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libbarclay-java/usr/share/doc -type f -a -true -a ! -regex 'debian/libbarclay-java/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libbarclay-java/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libbarclay-java -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing -O--buildsystem=gradle dh_installdeb -O--buildsystem=gradle install -d debian/libbarclay-java/DEBIAN rm -f debian/libbarclay-java.debhelper.log debian/rules override_dh_gencontrol make[1]: Entering directory '/build/barclay-2.1.0' cat debian/control \ | sed -e '/^Build-.*Depends:/,/^[^[:space:]#]/{s/^Build-.*Depends:/ /;p};d' \ | grep '^[[:space:]]' \ | tr ',' '\n' \ > debian/bd-temp-substvars echo -n "bd:barclay-java=" > debian/bd.substvars grep 'libbarclay-java ' debian/bd-temp-substvars \ | tr "\n" "," \ | sed -e 's/[[:space:]]\+/ /g;s/,$/\n/' \ >> debian/bd.substvars dh_gencontrol -O--buildsystem=gradle -- -Tdebian/bd.substvars echo misc:Depends= >> debian/libbarclay-java.substvars echo misc:Pre-Depends= >> debian/libbarclay-java.substvars dpkg-gencontrol -plibbarclay-java -ldebian/changelog -Tdebian/libbarclay-java.substvars -Pdebian/libbarclay-java -UMulti-Arch -Tdebian/bd.substvars dpkg-gencontrol: warning: Depends field of package libbarclay-java: substitution variable ${maven:Depends} used, but is not defined dpkg-gencontrol: warning: package libbarclay-java: substitution variable ${java:Depends} unused, but is defined chmod 0644 -- debian/libbarclay-java/DEBIAN/control chown 0:0 -- debian/libbarclay-java/DEBIAN/control make[1]: Leaving directory '/build/barclay-2.1.0' dh_md5sums -O--buildsystem=gradle cd debian/libbarclay-java >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libbarclay-java/DEBIAN/md5sums chown 0:0 -- debian/libbarclay-java/DEBIAN/md5sums dh_builddeb -O--buildsystem=gradle dpkg-deb --build debian/libbarclay-java .. dpkg-deb: building package 'libbarclay-java' in '../libbarclay-java_2.1.0-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../barclay_2.1.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/12823/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/12823/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12823 and its subdirectories I: Current time: Fri Aug 13 11:14:16 +14 2021 I: pbuilder-time-stamp: 1628802856