I: pbuilder: network access will be disabled during build I: Current time: Sun Aug 8 06:31:25 +14 2021 I: pbuilder-time-stamp: 1628353885 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [avogadro_1.2.0-4.dsc] I: copying [./avogadro_1.2.0.orig.tar.gz] I: copying [./avogadro_1.2.0-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Jul 18 23:03:04 2018 +14 gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./avogadro_1.2.0-4.dsc dpkg-source: info: extracting avogadro in avogadro-1.2.0 dpkg-source: info: unpacking avogadro_1.2.0.orig.tar.gz dpkg-source: info: unpacking avogadro_1.2.0-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying probe-X11-paths-with-find_package.patch dpkg-source: info: applying boost148.patch dpkg-source: info: applying eigen3.patch dpkg-source: info: applying gcc-version.diff dpkg-source: info: applying libmsymfloat.patch dpkg-source: info: applying eigen3_lib.patch dpkg-source: info: applying libsymspg.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/63354/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/63354/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/63354/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=4e746779b08e43b399b0cfa147d1ab02 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=63354 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.NBd7tS6Weo/pbuilderrc_eAA5 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.NBd7tS6Weo/b2 --logfile b2/build.log avogadro_1.2.0-4.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash -rwxr-xr-x 1 root root 109408 Mar 1 2019 date -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd -rwxr-xr-x 1 root root 93744 Mar 1 2019 df -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 35424 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln -rwxr-xr-x 1 root root 56760 Jul 27 2018 login -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 10 2019 more -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Aug 8 06:31 sh -> bash lrwxrwxrwx 1 root root 4 Aug 7 22:25 sh.distrib -> dash -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty -rwsr-xr-x 1 root root 63568 Jan 10 2019 su -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch -rwxr-xr-x 1 root root 35424 Mar 1 2019 true -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/63354/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper (>= 10), dh-python, libboost-python-dev, libeigen3-dev (>> 3.3), libgl2ps-dev, libglew-dev, libopenbabel-dev, libqt4-dev, libqt4-opengl-dev, libsymspg-dev, pkg-config, python, python-dev, python-numpy, python-sip-dev, qt4-dev-tools, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper (>= 10); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev (>> 3.3); however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgl2ps-dev; however: Package libgl2ps-dev is not installed. pbuilder-satisfydepends-dummy depends on libglew-dev; however: Package libglew-dev is not installed. pbuilder-satisfydepends-dummy depends on libopenbabel-dev; however: Package libopenbabel-dev is not installed. pbuilder-satisfydepends-dummy depends on libqt4-dev; however: Package libqt4-dev is not installed. pbuilder-satisfydepends-dummy depends on libqt4-opengl-dev; however: Package libqt4-opengl-dev is not installed. pbuilder-satisfydepends-dummy depends on libsymspg-dev; however: Package libsymspg-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on python; however: Package python is not installed. pbuilder-satisfydepends-dummy depends on python-dev; however: Package python-dev is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python-sip-dev; however: Package python-sip-dev is not installed. pbuilder-satisfydepends-dummy depends on qt4-dev-tools; however: Package qt4-dev-tools is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libaudio2{a} libblas3{a} libboost-python-dev{a} libboost-python1.67-dev{a} libboost-python1.67.0{a} libboost1.67-dev{a} libbsd0{a} libcairo2{a} libcroco3{a} libcurl4{a} libdbus-1-3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-dev{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-mesa0{a} libegl1{a} libeigen3-dev{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgbm1{a} libgfortran5{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libgl2ps-dev{a} libgl2ps1.4{a} libglapi-mesa{a} libgles1{a} libgles2{a} libglew-dev{a} libglew2.1{a} libglib2.0-0{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgssapi-krb5-2{a} libice6{a} libicu63{a} libjbig0{a} libjpeg62-turbo{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap-2.4-2{a} libldap-common{a} libllvm7{a} libmagic-mgc{a} libmagic1{a} libmng1{a} libmpdec2{a} libncurses6{a} libnghttp2-14{a} libopenbabel-dev{a} libopenbabel5{a} libopengl0{a} libpciaccess0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libprocps7{a} libpsl5{a} libpthread-stubs0-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libqt4-dbus{a} libqt4-declarative{a} libqt4-designer{a} libqt4-dev{a} libqt4-dev-bin{a} libqt4-help{a} libqt4-network{a} libqt4-opengl{a} libqt4-opengl-dev{a} libqt4-qt3support{a} libqt4-script{a} libqt4-scripttools{a} libqt4-sql{a} libqt4-sql-sqlite{a} libqt4-svg{a} libqt4-test{a} libqt4-xml{a} libqt4-xmlpatterns{a} libqtcore4{a} libqtdbus4{a} libqtgui4{a} libreadline7{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libssl1.1{a} libsymspg-dev{a} libsymspg1{a} libtiff5{a} libtool{a} libuchardet0{a} libuv1{a} libwayland-client0{a} libwayland-server0{a} libwebp6{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri2-0-dev{a} libxcb-dri3-0{a} libxcb-dri3-dev{a} libxcb-glx0{a} libxcb-glx0-dev{a} libxcb-present-dev{a} libxcb-present0{a} libxcb-randr0{a} libxcb-randr0-dev{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shape0{a} libxcb-shape0-dev{a} libxcb-shm0{a} libxcb-sync-dev{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb-xfixes0-dev{a} libxcb1{a} libxcb1-dev{a} libxdamage-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxi6{a} libxml2{a} libxrender1{a} libxshmfence-dev{a} libxshmfence1{a} libxt6{a} libxtst6{a} libxxf86vm-dev{a} libxxf86vm1{a} lsb-base{a} m4{a} man-db{a} mesa-common-dev{a} mime-support{a} pkg-config{a} po-debconf{a} procps{a} python{a} python-dev{a} python-enum34{a} python-minimal{a} python-numpy{a} python-pkg-resources{a} python-sip{a} python-sip-dev{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} qdbus{a} qt4-dev-tools{a} qt4-linguist-tools{a} qt4-qmake{a} qtchooser{a} qtcore4-l10n{a} readline-common{a} sensible-utils{a} sip-dev{a} ucf{a} x11-common{a} x11proto-core-dev{a} x11proto-damage-dev{a} x11proto-dev{a} x11proto-fixes-dev{a} x11proto-xext-dev{a} x11proto-xf86vidmode-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus krb5-locales libarchive-cpio-perl libcups2 libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix qt-at-spi qt4-designer qt4-doc shared-mime-info wget xdg-user-dirs 0 packages upgraded, 251 newly installed, 0 to remove and 0 not upgraded. Need to get 201 MB of archives. After unpacking 830 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u6 [1539 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 cmake-data all 3.13.4-1 [1476 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 libarchive13 amd64 3.3.3-4+deb10u1 [313 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u1 [65.8 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u1 [122 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u1 [369 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u1 [158 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u6 [224 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u2 [332 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 librhash0 amd64 1.3.8-1 [122 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libuv1 amd64 1.24.1-1 [110 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 cmake amd64 3.13.4-1 [3480 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 dh-python all 3.20190308 [99.3 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u2 [380 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 94 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get: 98 http://deb.debian.org/debian buster/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 libaudio2 amd64 1.9.4-6 [80.0 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get: 102 http://deb.debian.org/debian buster/main amd64 libboost1.67-dev amd64 1.67.0-13+deb10u1 [8388 kB] Get: 103 http://deb.debian.org/debian buster/main amd64 libboost-python1.67.0 amd64 1.67.0-13+deb10u1 [328 kB] Get: 104 http://deb.debian.org/debian buster/main amd64 libpython2.7 amd64 2.7.16-2+deb10u1 [1036 kB] Get: 105 http://deb.debian.org/debian buster/main amd64 libexpat1-dev amd64 2.2.6-2+deb10u1 [153 kB] Get: 106 http://deb.debian.org/debian buster/main amd64 libpython2.7-dev amd64 2.7.16-2+deb10u1 [31.6 MB] Get: 107 http://deb.debian.org/debian buster/main amd64 libpython2-dev amd64 2.7.16-1 [20.9 kB] Get: 108 http://deb.debian.org/debian buster/main amd64 libpython-dev amd64 2.7.16-1 [20.9 kB] Get: 109 http://deb.debian.org/debian buster/main amd64 python2.7-dev amd64 2.7.16-2+deb10u1 [294 kB] Get: 110 http://deb.debian.org/debian buster/main amd64 python2-dev amd64 2.7.16-1 [1212 B] Get: 111 http://deb.debian.org/debian buster/main amd64 python-dev amd64 2.7.16-1 [1192 B] Get: 112 http://deb.debian.org/debian buster/main amd64 libpython3.7 amd64 3.7.3-2+deb10u3 [1498 kB] Get: 113 http://deb.debian.org/debian buster/main amd64 libpython3.7-dev amd64 3.7.3-2+deb10u3 [48.4 MB] Get: 114 http://deb.debian.org/debian buster/main amd64 libpython3-dev amd64 3.7.3-1 [20.1 kB] Get: 115 http://deb.debian.org/debian buster/main amd64 python3.7-dev amd64 3.7.3-2+deb10u3 [510 kB] Get: 116 http://deb.debian.org/debian buster/main amd64 python3-dev amd64 3.7.3-1 [1264 B] Get: 117 http://deb.debian.org/debian buster/main amd64 libboost-python1.67-dev amd64 1.67.0-13+deb10u1 [335 kB] Get: 118 http://deb.debian.org/debian buster/main amd64 libboost-python-dev amd64 1.67.0.1 [3948 B] Get: 119 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get: 120 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get: 121 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get: 122 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get: 123 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 124 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get: 125 http://deb.debian.org/debian buster/main amd64 libdbus-1-3 amd64 1.12.20-0+deb10u1 [215 kB] Get: 126 http://deb.debian.org/debian buster/main amd64 libdrm-common all 2.4.97-1 [13.8 kB] Get: 127 http://deb.debian.org/debian buster/main amd64 libdrm2 amd64 2.4.97-1 [39.7 kB] Get: 128 http://deb.debian.org/debian buster/main amd64 libdrm-amdgpu1 amd64 2.4.97-1 [27.3 kB] Get: 129 http://deb.debian.org/debian buster/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get: 130 http://deb.debian.org/debian buster/main amd64 libdrm-intel1 amd64 2.4.97-1 [69.8 kB] Get: 131 http://deb.debian.org/debian buster/main amd64 libdrm-radeon1 amd64 2.4.97-1 [31.1 kB] Get: 132 http://deb.debian.org/debian buster/main amd64 libdrm-nouveau2 amd64 2.4.97-1 [26.3 kB] Get: 133 http://deb.debian.org/debian buster/main amd64 libdrm-dev amd64 2.4.97-1 [131 kB] Get: 134 http://deb.debian.org/debian buster/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get: 135 http://deb.debian.org/debian buster/main amd64 libwayland-server0 amd64 1.16.0-1 [32.5 kB] Get: 136 http://deb.debian.org/debian buster/main amd64 libgbm1 amd64 18.3.6-2+deb10u1 [67.8 kB] Get: 137 http://deb.debian.org/debian buster/main amd64 libglapi-mesa amd64 18.3.6-2+deb10u1 [66.3 kB] Get: 138 http://deb.debian.org/debian buster/main amd64 libwayland-client0 amd64 1.16.0-1 [26.4 kB] Get: 139 http://deb.debian.org/debian buster/main amd64 libx11-xcb1 amd64 2:1.6.7-1+deb10u2 [191 kB] Get: 140 http://deb.debian.org/debian buster/main amd64 libxcb-dri2-0 amd64 1.13.1-2 [101 kB] Get: 141 http://deb.debian.org/debian buster/main amd64 libxcb-dri3-0 amd64 1.13.1-2 [100 kB] Get: 142 http://deb.debian.org/debian buster/main amd64 libxcb-present0 amd64 1.13.1-2 [99.1 kB] Get: 143 http://deb.debian.org/debian buster/main amd64 libxcb-sync1 amd64 1.13.1-2 [103 kB] Get: 144 http://deb.debian.org/debian buster/main amd64 libxcb-xfixes0 amd64 1.13.1-2 [103 kB] Get: 145 http://deb.debian.org/debian buster/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get: 146 http://deb.debian.org/debian buster/main amd64 libegl-mesa0 amd64 18.3.6-2+deb10u1 [135 kB] Get: 147 http://deb.debian.org/debian buster/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get: 148 http://deb.debian.org/debian buster/main amd64 libeigen3-dev all 3.3.7-1 [850 kB] Get: 149 http://deb.debian.org/debian buster/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get: 150 http://deb.debian.org/debian buster/main amd64 x11proto-dev all 2018.4-4 [251 kB] Get: 151 http://deb.debian.org/debian buster/main amd64 x11proto-core-dev all 2018.4-4 [3128 B] Get: 152 http://deb.debian.org/debian buster/main amd64 libxau-dev amd64 1:1.0.8-1+b2 [23.1 kB] Get: 153 http://deb.debian.org/debian buster/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get: 154 http://deb.debian.org/debian buster/main amd64 xtrans-dev all 1.3.5-1 [100 kB] Get: 155 http://deb.debian.org/debian buster/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B] Get: 156 http://deb.debian.org/debian buster/main amd64 libxcb1-dev amd64 1.13.1-2 [174 kB] Get: 157 http://deb.debian.org/debian buster/main amd64 libx11-dev amd64 2:1.6.7-1+deb10u2 [825 kB] Get: 158 http://deb.debian.org/debian buster/main amd64 mesa-common-dev amd64 18.3.6-2+deb10u1 [611 kB] Get: 159 http://deb.debian.org/debian buster/main amd64 libglvnd0 amd64 1.1.0-1 [48.6 kB] Get: 160 http://deb.debian.org/debian buster/main amd64 libglvnd-core-dev amd64 1.1.0-1 [13.2 kB] Get: 161 http://deb.debian.org/debian buster/main amd64 libegl1 amd64 1.1.0-1 [33.6 kB] Get: 162 http://deb.debian.org/debian buster/main amd64 libgles1 amd64 1.1.0-1 [13.8 kB] Get: 163 http://deb.debian.org/debian buster/main amd64 libgles2 amd64 1.1.0-1 [19.0 kB] Get: 164 http://deb.debian.org/debian buster/main amd64 libxcb-glx0 amd64 1.13.1-2 [116 kB] Get: 165 http://deb.debian.org/debian buster/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get: 166 http://deb.debian.org/debian buster/main amd64 libxdamage1 amd64 1:1.1.4-3+b3 [14.9 kB] Get: 167 http://deb.debian.org/debian buster/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get: 168 http://deb.debian.org/debian buster/main amd64 libllvm7 amd64 1:7.0.1-8+deb10u2 [13.1 MB] Get: 169 http://deb.debian.org/debian buster/main amd64 libsensors-config all 1:3.5.0-3 [31.6 kB] Get: 170 http://deb.debian.org/debian buster/main amd64 libsensors5 amd64 1:3.5.0-3 [52.6 kB] Get: 171 http://deb.debian.org/debian buster/main amd64 libgl1-mesa-dri amd64 18.3.6-2+deb10u1 [6685 kB] Get: 172 http://deb.debian.org/debian buster/main amd64 libglx-mesa0 amd64 18.3.6-2+deb10u1 [180 kB] Get: 173 http://deb.debian.org/debian buster/main amd64 libglx0 amd64 1.1.0-1 [30.0 kB] Get: 174 http://deb.debian.org/debian buster/main amd64 libgl1 amd64 1.1.0-1 [91.1 kB] Get: 175 http://deb.debian.org/debian buster/main amd64 libopengl0 amd64 1.1.0-1 [33.4 kB] Get: 176 http://deb.debian.org/debian buster/main amd64 libglvnd-dev amd64 1.1.0-1 [5128 B] Get: 177 http://deb.debian.org/debian buster/main amd64 libx11-xcb-dev amd64 2:1.6.7-1+deb10u2 [193 kB] Get: 178 http://deb.debian.org/debian buster/main amd64 libxcb-dri3-dev amd64 1.13.1-2 [101 kB] Get: 179 http://deb.debian.org/debian buster/main amd64 libxcb-randr0 amd64 1.13.1-2 [110 kB] Get: 180 http://deb.debian.org/debian buster/main amd64 libxcb-render0-dev amd64 1.13.1-2 [112 kB] Get: 181 http://deb.debian.org/debian buster/main amd64 libxcb-randr0-dev amd64 1.13.1-2 [114 kB] Get: 182 http://deb.debian.org/debian buster/main amd64 libxcb-shape0 amd64 1.13.1-2 [99.5 kB] Get: 183 http://deb.debian.org/debian buster/main amd64 libxcb-shape0-dev amd64 1.13.1-2 [101 kB] Get: 184 http://deb.debian.org/debian buster/main amd64 libxcb-xfixes0-dev amd64 1.13.1-2 [105 kB] Get: 185 http://deb.debian.org/debian buster/main amd64 libxcb-sync-dev amd64 1.13.1-2 [104 kB] Get: 186 http://deb.debian.org/debian buster/main amd64 libxcb-present-dev amd64 1.13.1-2 [101 kB] Get: 187 http://deb.debian.org/debian buster/main amd64 libxshmfence-dev amd64 1.3-1 [8360 B] Get: 188 http://deb.debian.org/debian buster/main amd64 libxcb-dri2-0-dev amd64 1.13.1-2 [102 kB] Get: 189 http://deb.debian.org/debian buster/main amd64 libxcb-glx0-dev amd64 1.13.1-2 [122 kB] Get: 190 http://deb.debian.org/debian buster/main amd64 x11proto-fixes-dev all 1:2018.4-4 [3140 B] Get: 191 http://deb.debian.org/debian buster/main amd64 libxfixes-dev amd64 1:5.0.3-1 [23.8 kB] Get: 192 http://deb.debian.org/debian buster/main amd64 x11proto-damage-dev all 1:2018.4-4 [3140 B] Get: 193 http://deb.debian.org/debian buster/main amd64 libxdamage-dev amd64 1:1.1.4-3+b3 [14.6 kB] Get: 194 http://deb.debian.org/debian buster/main amd64 x11proto-xext-dev all 2018.4-4 [3128 B] Get: 195 http://deb.debian.org/debian buster/main amd64 libxext-dev amd64 2:1.3.3-1+b2 [107 kB] Get: 196 http://deb.debian.org/debian buster/main amd64 x11proto-xf86vidmode-dev all 2018.4-4 [3140 B] Get: 197 http://deb.debian.org/debian buster/main amd64 libxxf86vm-dev amd64 1:1.1.4-1+b2 [25.4 kB] Get: 198 http://deb.debian.org/debian buster/main amd64 libgl1-mesa-dev amd64 18.3.6-2+deb10u1 [48.0 kB] Get: 199 http://deb.debian.org/debian buster/main amd64 libgl2ps1.4 amd64 1.4.0+dfsg1-2 [39.0 kB] Get: 200 http://deb.debian.org/debian buster/main amd64 libgl2ps-dev amd64 1.4.0+dfsg1-2 [14.8 kB] Get: 201 http://deb.debian.org/debian buster/main amd64 libglew2.1 amd64 2.1.0-4 [161 kB] Get: 202 http://deb.debian.org/debian buster/main amd64 libglu1-mesa amd64 9.0.0-2.1+b3 [169 kB] Get: 203 http://deb.debian.org/debian buster/main amd64 libglu1-mesa-dev amd64 9.0.0-2.1+b3 [208 kB] Get: 204 http://deb.debian.org/debian buster/main amd64 libglew-dev amd64 2.1.0-4 [141 kB] Get: 205 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 206 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 207 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get: 208 http://deb.debian.org/debian buster/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get: 209 http://deb.debian.org/debian buster/main amd64 libmng1 amd64 1.0.10+dfsg-3.1+b5 [211 kB] Get: 210 http://deb.debian.org/debian buster/main amd64 libopenbabel5 amd64 2.4.1+dfsg-3 [3003 kB] Get: 211 http://deb.debian.org/debian buster/main amd64 libopenbabel-dev amd64 2.4.1+dfsg-3 [189 kB] Get: 212 http://deb.debian.org/debian buster/main amd64 qtcore4-l10n all 4:4.8.7+dfsg-18+deb10u1 [662 kB] Get: 213 http://deb.debian.org/debian buster/main amd64 libqtcore4 amd64 4:4.8.7+dfsg-18+deb10u1 [1640 kB] Get: 214 http://deb.debian.org/debian buster/main amd64 libqt4-xml amd64 4:4.8.7+dfsg-18+deb10u1 [149 kB] Get: 215 http://deb.debian.org/debian buster/main amd64 libqtdbus4 amd64 4:4.8.7+dfsg-18+deb10u1 [238 kB] Get: 216 http://deb.debian.org/debian buster/main amd64 qtchooser amd64 66-2 [26.3 kB] Get: 217 http://deb.debian.org/debian buster/main amd64 qdbus amd64 4:4.8.7+dfsg-18+deb10u1 [77.6 kB] Get: 218 http://deb.debian.org/debian buster/main amd64 libqt4-dbus amd64 4:4.8.7+dfsg-18+deb10u1 [53.9 kB] Get: 219 http://deb.debian.org/debian buster/main amd64 libqt4-network amd64 4:4.8.7+dfsg-18+deb10u1 [624 kB] Get: 220 http://deb.debian.org/debian buster/main amd64 libqt4-script amd64 4:4.8.7+dfsg-18+deb10u1 [916 kB] Get: 221 http://deb.debian.org/debian buster/main amd64 libqt4-sql amd64 4:4.8.7+dfsg-18+deb10u1 [149 kB] Get: 222 http://deb.debian.org/debian buster/main amd64 libqt4-xmlpatterns amd64 4:4.8.7+dfsg-18+deb10u1 [1181 kB] Get: 223 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get: 224 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u2 [271 kB] Get: 225 http://deb.debian.org/debian buster/main amd64 libqtgui4 amd64 4:4.8.7+dfsg-18+deb10u1 [4234 kB] Get: 226 http://deb.debian.org/debian buster/main amd64 libqt4-declarative amd64 4:4.8.7+dfsg-18+deb10u1 [1182 kB] Get: 227 http://deb.debian.org/debian buster/main amd64 libqt4-designer amd64 4:4.8.7+dfsg-18+deb10u1 [3762 kB] Get: 228 http://deb.debian.org/debian buster/main amd64 libqt4-qt3support amd64 4:4.8.7+dfsg-18+deb10u1 [1123 kB] Get: 229 http://deb.debian.org/debian buster/main amd64 libqt4-dev-bin amd64 4:4.8.7+dfsg-18+deb10u1 [1788 kB] Get: 230 http://deb.debian.org/debian buster/main amd64 libqt4-help amd64 4:4.8.7+dfsg-18+deb10u1 [257 kB] Get: 231 http://deb.debian.org/debian buster/main amd64 libqt4-scripttools amd64 4:4.8.7+dfsg-18+deb10u1 [288 kB] Get: 232 http://deb.debian.org/debian buster/main amd64 libqt4-svg amd64 4:4.8.7+dfsg-18+deb10u1 [190 kB] Get: 233 http://deb.debian.org/debian buster/main amd64 libqt4-test amd64 4:4.8.7+dfsg-18+deb10u1 [109 kB] Get: 234 http://deb.debian.org/debian buster/main amd64 qt4-linguist-tools amd64 4:4.8.7+dfsg-18+deb10u1 [923 kB] Get: 235 http://deb.debian.org/debian buster/main amd64 qt4-qmake amd64 4:4.8.7+dfsg-18+deb10u1 [1305 kB] Get: 236 http://deb.debian.org/debian buster/main amd64 libqt4-dev amd64 4:4.8.7+dfsg-18+deb10u1 [893 kB] Get: 237 http://deb.debian.org/debian buster/main amd64 libqt4-opengl amd64 4:4.8.7+dfsg-18+deb10u1 [359 kB] Get: 238 http://deb.debian.org/debian buster/main amd64 libqt4-opengl-dev amd64 4:4.8.7+dfsg-18+deb10u1 [70.3 kB] Get: 239 http://deb.debian.org/debian buster/main amd64 libqt4-sql-sqlite amd64 4:4.8.7+dfsg-18+deb10u1 [71.5 kB] Get: 240 http://deb.debian.org/debian buster/main amd64 libsymspg1 amd64 1.12.2-1 [84.1 kB] Get: 241 http://deb.debian.org/debian buster/main amd64 libsymspg-dev amd64 1.12.2-1 [91.4 kB] Get: 242 http://deb.debian.org/debian buster/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get: 243 http://deb.debian.org/debian buster/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get: 244 http://deb.debian.org/debian buster/main amd64 python-enum34 all 1.1.6-2 [35.3 kB] Get: 245 http://deb.debian.org/debian buster/main amd64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 246 http://deb.debian.org/debian buster/main amd64 python-numpy amd64 1:1.16.2-1 [2101 kB] Get: 247 http://deb.debian.org/debian buster/main amd64 python-sip amd64 4.19.14+dfsg-2 [170 kB] Get: 248 http://deb.debian.org/debian buster/main amd64 sip-dev amd64 4.19.14+dfsg-2 [250 kB] Get: 249 http://deb.debian.org/debian buster/main amd64 python-sip-dev amd64 4.19.14+dfsg-2 [116 kB] Get: 250 http://deb.debian.org/debian buster/main amd64 qt4-dev-tools amd64 4:4.8.7+dfsg-18+deb10u1 [4089 kB] Get: 251 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] Fetched 201 MB in 3s (76.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20658 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_amd64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... 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Preparing to unpack .../python3.7-minimal_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u3) ... Setting up libssl1.1:amd64 (1.1.1d-0+deb10u6) ... Setting up libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u3) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Unpacking libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package python3.7. Preparing to unpack .../python3.7_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7 (3.7.3-2+deb10u3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../libpython3-stdlib_3.7.3-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... 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Unpacking libprocps7:amd64 (2:3.3.15-2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../003-lsb-base_10.2019051400_all.deb ... Unpacking lsb-base (10.2019051400) ... Selecting previously unselected package procps. Preparing to unpack .../004-procps_2%3a3.3.15-2_amd64.deb ... Unpacking procps (2:3.3.15-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../005-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../007-libmagic1_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package ucf. Preparing to unpack .../010-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../011-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../012-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../013-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../014-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../015-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../016-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package cmake-data. Preparing to unpack .../017-cmake-data_3.13.4-1_all.deb ... Unpacking cmake-data (3.13.4-1) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../018-libicu63_63.1-6+deb10u1_amd64.deb ... Unpacking libicu63:amd64 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../019-libxml2_2.9.4+dfsg1-7+deb10u2_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../020-libarchive13_3.3.3-4+deb10u1_amd64.deb ... Unpacking libarchive13:amd64 (3.3.3-4+deb10u1) ... Selecting previously unselected package libkeyutils1:amd64. 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Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up libglvnd0:amd64 (1.1.0-1) ... Setting up libprocps7:amd64 (2:3.3.15-2) ... Setting up libsymspg1:amd64 (1.12.2-1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.5.0-3) ... Setting up libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u2) ... Setting up sip-dev (4.19.14+dfsg-2) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u6) ... Setting up libpthread-stubs0-dev:amd64 (0.4-1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up libopengl0:amd64 (1.1.0-1) ... 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Setting up libglapi-mesa:amd64 (18.3.6-2+deb10u1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up librhash0:amd64 (1.3.8-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libboost-python1.67.0 (1.67.0-13+deb10u1) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up cmake-data (3.13.4-1) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u1) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u2) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libdrm-common (2.4.97-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... 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Setting up libpython3.7-dev:amd64 (3.7.3-2+deb10u3) ... Setting up libxcb-glx0:amd64 (1.13.1-2) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libxcb-shape0:amd64 (1.13.1-2) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u6) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up libxcb-present0:amd64 (1.13.1-2) ... Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up x11proto-damage-dev (1:2018.4-4) ... Setting up libfreetype6:amd64 (2.9.1-3+deb10u2) ... Setting up libxcb-sync1:amd64 (1.13.1-2) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libeigen3-dev (3.3.7-1) ... Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u1) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up qt4-qmake (4:4.8.7+dfsg-18+deb10u1) ... Setting up libqtcore4:amd64 (4:4.8.7+dfsg-18+deb10u1) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up libxcb-dri2-0:amd64 (1.13.1-2) ... Setting up x11proto-xf86vidmode-dev (2018.4-4) ... Setting up x11proto-xext-dev (2018.4-4) ... Setting up libdrm2:amd64 (2.4.97-1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up libxcb-randr0:amd64 (1.13.1-2) ... Setting up libcurl4:amd64 (7.64.0-4+deb10u2) ... Setting up libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up x11proto-fixes-dev (1:2018.4-4) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.97-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:amd64 (1.13.1-2) ... Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up libpython2.7:amd64 (2.7.16-2+deb10u1) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libpython2.7-dev:amd64 (2.7.16-2+deb10u1) ... Setting up libdrm-nouveau2:amd64 (2.4.97-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libpython3-dev:amd64 (3.7.3-1) ... Setting up libxcb1-dev:amd64 (1.13.1-2) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libgbm1:amd64 (18.3.6-2+deb10u1) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up libdrm-radeon1:amd64 (2.4.97-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libdrm-intel1:amd64 (2.4.97-1) ... Setting up libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... Setting up libx11-dev:amd64 (2:1.6.7-1+deb10u2) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxcb-dri3-dev:amd64 (1.13.1-2) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up python3.7-dev (3.7.3-2+deb10u3) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libqt4-sql:amd64 (4:4.8.7+dfsg-18+deb10u1) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up libqt4-xml:amd64 (4:4.8.7+dfsg-18+deb10u1) ... 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Setting up dh-autoreconf (19) ... Setting up debhelper (12.1.1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/avogadro-1.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package avogadro dpkg-buildpackage: info: source version 1.2.0-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python2 debian/rules override_dh_clean make[1]: Entering directory '/build/avogadro-1.2.0' dh_clean conf.log conf.pri make[1]: Leaving directory '/build/avogadro-1.2.0' debian/rules build dh build --with python2 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/avogadro-1.2.0' dh_auto_configure -- \ -DENABLE_GLSL=ON \ -DENABLE_RPATH=OFF \ -DENABLE_UPDATE_CHECKER=OFF \ -DPYTHON_EXECUTABLE=/usr/bin/python2.7 \ -DPYTHON_LIBRARY=/usr/lib/x86_64-linux-gnu/libpython2.7.so \ -DPYTHON_INCLUDE_DIR=/usr/include/python2.7/ cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DENABLE_GLSL=ON -DENABLE_RPATH=OFF -DENABLE_UPDATE_CHECKER=OFF -DPYTHON_EXECUTABLE=/usr/bin/python2.7 -DPYTHON_LIBRARY=/usr/lib/x86_64-linux-gnu/libpython2.7.so -DPYTHON_INCLUDE_DIR=/usr/include/python2.7/ .. -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- The build type is None -- Performing Test HAVE_NO_RTTI -- Performing Test HAVE_NO_RTTI - Success -- Performing Test HAVE_RTTI -- Performing Test HAVE_RTTI - Success -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Performing Test COMPILES_WITHOUT_FPERMISSIVE -- Performing Test COMPILES_WITHOUT_FPERMISSIVE - Failed -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found -- Found Qt4: /usr/bin/qmake (found suitable version "4.8.7", minimum required is "4.6.0") CMake Warning (dev) at /usr/share/cmake-3.13/Modules/FindOpenGL.cmake:270 (message): Policy CMP0072 is not set: FindOpenGL prefers GLVND by default when available. Run "cmake --help-policy CMP0072" for policy details. Use the cmake_policy command to set the policy and suppress this warning. FindOpenGL found both a legacy GL library: OPENGL_gl_LIBRARY: /usr/lib/x86_64-linux-gnu/libGL.so and GLVND libraries for OpenGL and GLX: OPENGL_opengl_LIBRARY: /usr/lib/x86_64-linux-gnu/libOpenGL.so OPENGL_glx_LIBRARY: /usr/lib/x86_64-linux-gnu/libGLX.so OpenGL_GL_PREFERENCE has not been set to "GLVND" or "LEGACY", so for compatibility with CMake 3.10 and below the legacy GL library will be used. Call Stack (most recent call first): CMakeLists.txt:227 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found OpenGL: /usr/lib/x86_64-linux-gnu/libOpenGL.so -- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so -- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Found X11: /usr/lib/x86_64-linux-gnu/libX11.so -- Found lupdate: /usr/bin/lupdate-qt4 -- Found lrelease: /usr/bin/lrelease-qt4 -- Found lconvert: /usr/bin/lconvert -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29") -- Checking for module 'openbabel-2.0>=2.3.0' -- Found openbabel-2.0, version 2.4.1 -- Found OpenBabel 2.3 or later: openbabel -- Found Git revision is: -- Building released version. -- Searching for python dependencies... -- [1/5] Boost Python -- Boost version: 1.67.0 -- Found the following Boost libraries: -- python -- Boost Python found... -- [2/5] Python Libraries -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython2.7.so -- [3/5] Python Interpreter -- Found PythonInterp: /usr/bin/python2.7 (found version "2.7.16") -- [4/5] Numpy Module -- Numpy headers found -- [5/5] SIP Module -- SIP version 267022 found -- Found SIP: /usr/include/python2.7 -- All python dependencies found - Python support enabled -- GLEW found and GLSL support enabled -- Threaded OpenGL rendering not enabled -- Setting new boost python libraries CMake Error: failed to create symbolic link '/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro//build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/config.h': no such file or directory -- Enabled python terminal -- Found Qt4: /usr/bin/qmake (found suitable version "4.8.7", minimum required is "4.6") -- Linking in static plugins: bsdyengine;navigatetool;elementcolor -- Python site-packages directory: /usr/lib/python2.7/dist-packages -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- docbook tools not found, doc targets disabled -- Configuring done CMake Warning (dev) in libavogadro/src/CMakeLists.txt: Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link interface. Run "cmake --help-policy CMP0022" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Target "avogadro" has an INTERFACE_LINK_LIBRARIES property which differs from its LINK_INTERFACE_LIBRARIES properties. INTERFACE_LINK_LIBRARIES: openbabel;/usr/lib/x86_64-linux-gnu/libQtOpenGL.so;/usr/lib/x86_64-linux-gnu/libQtGui.so;/usr/lib/x86_64-linux-gnu/libQtCore.so;/usr/lib/x86_64-linux-gnu/libGL.so;/usr/lib/x86_64-linux-gnu/libGLU.so;/usr/lib/x86_64-linux-gnu/libGLEW.so;/usr/lib/x86_64-linux-gnu/libpython2.7.so;/usr/lib/x86_64-linux-gnu/libboost_python.so;bsdyengine;navigatetool;elementcolor LINK_INTERFACE_LIBRARIES: This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in libavogadro/src/extensions/surfaces/openqube/CMakeLists.txt: Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link interface. Run "cmake --help-policy CMP0022" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Target "OpenQube" has an INTERFACE_LINK_LIBRARIES property which differs from its LINK_INTERFACE_LIBRARIES properties. INTERFACE_LINK_LIBRARIES: $<$>:/usr/lib/x86_64-linux-gnu/libQtCore.so>;$<$:/usr/lib/x86_64-linux-gnu/libQtCore.so>;$<$>:/usr/lib/x86_64-linux-gnu/libQtGui.so>;$<$:/usr/lib/x86_64-linux-gnu/libQtGui.so> LINK_INTERFACE_LIBRARIES: This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at libavogadro/src/extensions/crystallography/CMakeLists.txt:39 (add_dependencies): Policy CMP0046 is not set: Error on non-existent dependency in add_dependencies. Run "cmake --help-policy CMP0046" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The dependency target "symspg" of target "crystallographyextension" does not exist. This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/avogadro-1.2.0/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/avogadro-1.2.0' dh_auto_build cd obj-x86_64-linux-gnu && make -j15 make[1]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/avogadro-1.2.0 -B/build/avogadro-1.2.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/avogadro-1.2.0/obj-x86_64-linux-gnu/CMakeFiles /build/avogadro-1.2.0/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/depend make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/depend make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 0%] Generating moc_basisset.cxx [ 1%] Generating moc_bsdyengine.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx_parameters [ 1%] Generating moc_navigatetool.cxx [ 1%] Generating moc_gaussianset.cxx [ 1%] Generating ui_bsdysettingswidget.h [ 2%] Generating qrc_navigatetool.cxx [ 2%] Generating ui_navigatesettingswidget.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx_parameters [ 2%] Generating moc_elementcolor.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx_parameters [ 2%] Generating moc_slaterset.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name navigatetool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/navigatetool.qrc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_bsdysettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/bsdysettingswidget.ui cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/ui_navigatesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/tools/navigatesettingswidget.ui cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx_parameters Scanning dependencies of target tubegen make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' Scanning dependencies of target msym make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake --color= [ 2%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/ANSR.cpp.o [ 2%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Bitmap.c.o [ 2%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Core3DMath.c.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -w -o CMakeFiles/tubegen.dir/Bitmap.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Bitmap.c [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/character_table.c.o [ 2%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Cell.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -w -o CMakeFiles/tubegen.dir/Core3DMath.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Core3DMath.c cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/ANSR.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/ANSR.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/character_table.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c [ 2%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/diamond.cpp.o [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/context.c.o [ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/CrystalCell.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/Cell.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Cell.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/diamond.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/diamond.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/context.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c [ 3%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/eprintf.c.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/CrystalCell.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/CrystalCell.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -w -o CMakeFiles/tubegen.dir/eprintf.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/eprintf.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color= [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/elements.c.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/elements.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/elements.c [ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/fcc.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/fcc.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/fcc.cpp Scanning dependencies of target elementcolor In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/elements.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color= [ 3%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/elementcolor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/elementcolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/elementcolor.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake --color= In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/colors/elementcolor.h:29, from /build/avogadro-1.2.0/libavogadro/src/colors/elementcolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/graphite.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/graphite.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/graphite.cpp [ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubeGen.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/TubeGen.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/TubeGen.cpp [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/equivalence_set.c.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/equivalence_set.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/geometry.c.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/geometry.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/geometry.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target navigatetool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build Scanning dependencies of target bsdyengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/geometry.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 3%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/navigatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp [ 3%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/libavogadro/src/tools/navigatetool.h:29, from /build/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.h:28, from /build/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target OpenQube make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 3%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/atom.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/atom.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.cpp [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/linalg.c.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/linalg.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/linalg.c In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/bits/stl_algobase.h:59, from /usr/include/c++/8/vector:60, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:22, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/linalg.c:12: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubuleBasis.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/TubuleBasis.cpp [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/msym.c.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/msym.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/msym_error.c.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/msym_error.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym_error.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym_error.c:12: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/orbital.c.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/orbital.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/permutation.c.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/permutation.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/point_group.c.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/point_group.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c [ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symmetrize.c.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/symmetrize.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c:12: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symmetry.c.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/symmetry.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.h:16, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.h:15, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symop.c.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/symop.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 4%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/elementcolor.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 4%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/eyecandy.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp [ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basisset.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/basisset.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:82, from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 4%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:82, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx [ 4%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/navigatetool.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basissetloader.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/basissetloader.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:82, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/cube.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/cube.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/cube.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/bits/stl_algobase.h:59, from /usr/include/c++/8/vector:60, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/cube.h:24, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/cube.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 4%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/bsdyengine.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessukout.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gamessukout.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:82, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessukout.h:22, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessus.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gamessus.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.h:22, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/orca.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/orca.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qalgorithms.h:45, from /usr/include/qt4/QtCore/qstringlist.h:45, from /usr/include/qt4/QtCore/QStringList:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.h:20, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 5%] Linking C static library libmsym.a cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cmake -P CMakeFiles/msym.dir/cmake_clean_target.cmake cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cmake -E cmake_link_script CMakeFiles/msym.dir/link.txt --verbose=1 /usr/bin/ar qc libmsym.a CMakeFiles/msym.dir/src/character_table.c.o CMakeFiles/msym.dir/src/context.c.o CMakeFiles/msym.dir/src/elements.c.o CMakeFiles/msym.dir/src/equivalence_set.c.o CMakeFiles/msym.dir/src/geometry.c.o CMakeFiles/msym.dir/src/linalg.c.o CMakeFiles/msym.dir/src/msym.c.o CMakeFiles/msym.dir/src/msym_error.c.o CMakeFiles/msym.dir/src/orbital.c.o CMakeFiles/msym.dir/src/permutation.c.o CMakeFiles/msym.dir/src/point_group.c.o CMakeFiles/msym.dir/src/symmetrize.c.o CMakeFiles/msym.dir/src/symmetry.c.o CMakeFiles/msym.dir/src/symop.c.o /usr/bin/ranlib libmsym.a [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.h:22, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 5%] Built target msym [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianset.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gaussianset.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:82, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 5%] Linking CXX static library elementcolor.a cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -P CMakeFiles/elementcolor.dir/cmake_clean_target.cmake cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/elementcolor.dir/link.txt --verbose=1 /usr/bin/ar qc elementcolor.a CMakeFiles/elementcolor.dir/elementcolor.cpp.o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o /usr/bin/ranlib elementcolor.a make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 5%] Built target elementcolor [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molden.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/molden.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:82, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.h:22, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molecule.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/molecule.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:82, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 5%] Linking CXX static library libtubegen.a cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -P CMakeFiles/tubegen.dir/cmake_clean_target.cmake [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/mopacaux.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/mopacaux.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -E cmake_link_script CMakeFiles/tubegen.dir/link.txt --verbose=1 In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/qtextstream.h:45, from /usr/include/qt4/QtCore/QTextStream:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/mopacaux.h:22, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /usr/bin/ar qc libtubegen.a CMakeFiles/tubegen.dir/Bitmap.c.o CMakeFiles/tubegen.dir/Core3DMath.c.o CMakeFiles/tubegen.dir/eprintf.c.o CMakeFiles/tubegen.dir/ANSR.cpp.o CMakeFiles/tubegen.dir/Cell.cpp.o CMakeFiles/tubegen.dir/CrystalCell.cpp.o CMakeFiles/tubegen.dir/diamond.cpp.o CMakeFiles/tubegen.dir/fcc.cpp.o CMakeFiles/tubegen.dir/graphite.cpp.o CMakeFiles/tubegen.dir/TubeGen.cpp.o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o /usr/bin/ranlib libtubegen.a make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 5%] Built target tubegen [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/slaterset.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/slaterset.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:82, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.h:22, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_basisset.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:82, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:82, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 6%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:82, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/slaterset.h:22, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 6%] Linking CXX static library bsdyengine.a cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -P CMakeFiles/bsdyengine.dir/cmake_clean_target.cmake cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/bsdyengine.dir/link.txt --verbose=1 /usr/bin/ar qc bsdyengine.a CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o /usr/bin/ranlib bsdyengine.a make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 6%] Built target bsdyengine [ 6%] Linking CXX static library navigatetool.a cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -P CMakeFiles/navigatetool.dir/cmake_clean_target.cmake cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/navigatetool.dir/link.txt --verbose=1 /usr/bin/ar qc navigatetool.a CMakeFiles/navigatetool.dir/navigatetool.cpp.o CMakeFiles/navigatetool.dir/eyecandy.cpp.o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o /usr/bin/ranlib navigatetool.a make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 6%] Built target navigatetool make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 7%] Generating moc_extension.cxx [ 7%] Generating moc_elementtranslator.cxx [ 7%] Generating moc_fragment.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_extension.cxx_parameters [ 7%] Generating moc_cube.cxx [ 7%] Generating moc_animation.cxx [ 7%] Generating qrc_pythontool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_cube.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_elementtranslator.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name pythontool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/qrc_pythontool.cxx /build/avogadro-1.2.0/libavogadro/src/pythontool.qrc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_animation.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_fragment.cxx_parameters [ 7%] Generating moc_elementdetail_p.cxx [ 7%] Generating moc_engine.cxx [ 8%] Generating moc_atom.cxx [ 8%] Generating moc_bond.cxx [ 8%] Generating moc_color.cxx [ 8%] Generating moc_colorbutton.cxx [ 8%] Generating moc_dockwidget.cxx [ 8%] Generating moc_dockextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_atom.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_bond.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_color.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_colorbutton.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_elementdetail_p.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_engine.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_dockextension.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_dockwidget.cxx_parameters [ 8%] Generating moc_glwidget.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_glwidget.cxx_parameters [ 8%] Generating moc_mesh.cxx [ 8%] Generating moc_meshgenerator.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_mesh.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_meshgenerator.cxx_parameters [ 8%] Generating moc_molecule.cxx [ 8%] Generating moc_moleculefile.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_molecule.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_moleculefile.cxx_parameters [ 8%] Generating moc_periodictablescene_p.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_periodictablescene_p.cxx_parameters [ 9%] Generating moc_plotwidget.cxx [ 9%] Generating moc_periodictableview.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_periodictableview.cxx_parameters [ 9%] Generating moc_plugin.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_plotwidget.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_plugin.cxx_parameters [ 9%] Generating moc_pluginmanager.cxx [ 9%] Generating moc_primitive.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pluginmanager.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_primitive.cxx_parameters [ 9%] Generating moc_readfilethread_p.cxx [ 9%] Generating moc_protein.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_protein.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx_parameters [ 9%] Generating moc_residue.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_residue.cxx_parameters [ 9%] Generating moc_textmatrixeditor.cxx [ 9%] Generating moc_toolgroup.cxx [ 10%] Generating moc_zmatrix.cxx [ 10%] Generating moc_tool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_textmatrixeditor.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_tool.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_toolgroup.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_zmatrix.cxx_parameters [ 10%] Generating moc_pythonengine_p.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx_parameters [ 10%] Generating moc_pythontool_p.cxx [ 10%] Generating moc_pythonerror.cxx [ 10%] Generating moc_pythonextension_p.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythontool_p.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonerror.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonextension_p.cxx_parameters [ 10%] Generating libavogadro_ar.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ar.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ar.ts [ 10%] Generating libavogadro_bg.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/bg.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bg.ts [ 10%] Generating libavogadro_bs.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/bs.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bs.ts [ 10%] Generating libavogadro_ca.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ca.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca.ts [ 11%] Generating libavogadro_ca@valencia.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ca@valencia.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts [ 11%] Generating libavogadro_cs.qm [ 11%] Generating libavogadro_da.qm [ 11%] Generating libavogadro_de.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/cs.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_cs.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/da.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_da.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/de.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_de.ts [ 11%] Generating libavogadro_el.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/el.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_el.ts [ 11%] Generating libavogadro_en_AU.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/en_AU.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_AU.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ar.ts [ 11%] Generating libavogadro_en_CA.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/en_CA.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_CA.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bg.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... [ 11%] Generating libavogadro_en_GB.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/en_GB.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_GB.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bs.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_da.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_cs.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_de.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_el.ts [ 11%] Generating libavogadro_es.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/es.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_es.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... [ 11%] Generating libavogadro_et.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_CA.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_AU.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/et.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_et.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_GB.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_es.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_et.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_AU.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_AU.qm [ 12%] Generating libavogadro_eu.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/eu.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_eu.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_eu.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca@valencia.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ar.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ar.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bg.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bg.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_de.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_de.qm [ 12%] Generating libavogadro_fi.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/fi.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fi.ts [ 12%] Generating libavogadro_fr.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/fr.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fr.ts [ 12%] Generating libavogadro_gl.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/gl.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_gl.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_es.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_es.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ca.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_cs.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_cs.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_da.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_da.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_el.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_el.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_et.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_et.qm [ 12%] Generating libavogadro_he.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_GB.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_GB.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fi.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/he.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_he.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fr.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_CA.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_en_CA.qm Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bs.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_bs.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_gl.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... [ 12%] Generating libavogadro_hi.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/hi.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hi.ts [ 12%] Generating libavogadro_hu.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/hu.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hu.ts [ 12%] Generating libavogadro_id.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/id.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_id.ts [ 12%] Generating libavogadro_it.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/it.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_it.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_he.ts [ 13%] Generating libavogadro_ja.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ja.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ja.ts [ 13%] Generating libavogadro_kn.qm Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... [ 13%] Generating libavogadro_ko.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/kn.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_kn.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ko.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ko.ts [ 13%] Generating libavogadro_ms.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ms.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ms.ts [ 13%] Generating libavogadro_nb.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hi.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/nb.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nb.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hu.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_id.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_it.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_kn.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ja.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ko.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ms.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nb.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_eu.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_eu.qm [ 13%] Generating libavogadro_nl.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/nl.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nl.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nl.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fi.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fi.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_gl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_gl.qm [ 13%] Generating libavogadro_oc.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/oc.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_oc.ts [ 13%] Generating libavogadro_pl.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/pl.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pl.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_oc.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fr.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_fr.qm Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_he.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_he.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_it.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_it.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hi.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hi.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pl.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_kn.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_kn.qm Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hu.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_hu.qm [ 13%] Generating libavogadro_pt.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/pt.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ko.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ko.qm [ 14%] Generating libavogadro_pt_BR.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/pt_BR.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts [ 14%] Generating libavogadro_ru.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ru.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ru.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nb.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nb.qm [ 14%] Generating libavogadro_sk.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sk.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sk.ts [ 14%] Generating libavogadro_sl.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sl.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sl.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ja.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ja.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_id.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_id.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ms.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ms.qm [ 14%] Generating libavogadro_sq.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sq.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sq.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts [ 14%] Generating libavogadro_sr.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sr.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sr.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ru.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... [ 14%] Generating libavogadro_sv.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sv.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sv.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sk.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sl.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... [ 14%] Generating libavogadro_th.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/th.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_th.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sq.ts [ 14%] Generating libavogadro_tr.qm Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/tr.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_tr.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sr.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... [ 14%] Generating libavogadro_ug.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ug.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ug.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sv.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_th.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_tr.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ug.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_nl.qm [ 15%] Generating libavogadro_uk.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/uk.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_uk.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_uk.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_oc.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_oc.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pl.qm [ 15%] Generating libavogadro_vi.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/vi.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_vi.ts [ 15%] Generating libavogadro_zh_CN.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/zh_CN.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_vi.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt_BR.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_pt.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ru.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ru.qm [ 15%] Generating libavogadro_zh_TW.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/zh_TW.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sq.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sq.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_th.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_th.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sk.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sk.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sv.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sv.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sl.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sr.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_sr.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_tr.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_tr.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ug.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_ug.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_uk.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_uk.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_vi.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_vi.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_CN.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/libavogadro_zh_TW.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/CMakeFiles/avogadro.dir/DependInfo.cmake --color= Scanning dependencies of target avogadro make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/animation.cpp.o [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/atom.cpp.o [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/bond.cpp.o [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/camera.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/animation.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/animation.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/atom.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/atom.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/bond.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/bond.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/camera.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/camera.cpp [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementtranslator.cpp.o [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementdetail_p.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/elementtranslator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/elementtranslator.cpp [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/colorbutton.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/elementdetail_p.cpp [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cylinder_p.cpp.o [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/color.cpp.o [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/colorbutton.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colorbutton.cpp [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockwidget.cpp.o [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cube.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/cylinder_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementitem_p.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/color.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/color.cpp [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/engine.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/dockextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/dockextension.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/cube.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/cube.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/dockwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/dockwidget.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/elementitem_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/elementitem_p.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/engine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/libavogadro/src/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/animation.h:29, from /build/avogadro-1.2.0/libavogadro/src/animation.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/libavogadro/src/bond.h:31, from /build/avogadro-1.2.0/libavogadro/src/bond.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/libavogadro/src/atom.h:31, from /build/avogadro-1.2.0/libavogadro/src/atom.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/camera.h:35, from /build/avogadro-1.2.0/libavogadro/src/camera.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/colorbutton.h:31, from /build/avogadro-1.2.0/libavogadro/src/colorbutton.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qgraphicsitem.h:45, from /usr/include/qt4/QtGui/QGraphicsItem:1, from /build/avogadro-1.2.0/libavogadro/src/elementdetail_p.h:29, from /build/avogadro-1.2.0/libavogadro/src/elementdetail_p.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/elementtranslator.h:28, from /build/avogadro-1.2.0/libavogadro/src/elementtranslator.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/cylinder_p.h:30, from /build/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/color.h:32, from /build/avogadro-1.2.0/libavogadro/src/color.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/plugin.h:29, from /build/avogadro-1.2.0/libavogadro/src/extension.h:28, from /build/avogadro-1.2.0/libavogadro/src/dockextension.h:28, from /build/avogadro-1.2.0/libavogadro/src/dockextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/libavogadro/src/cube.h:29, from /build/avogadro-1.2.0/libavogadro/src/cube.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/libavogadro/src/dockwidget.h:21, from /build/avogadro-1.2.0/libavogadro/src/dockwidget.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qgraphicsitem.h:45, from /usr/include/qt4/QtGui/QGraphicsItem:1, from /build/avogadro-1.2.0/libavogadro/src/elementitem_p.h:29, from /build/avogadro-1.2.0/libavogadro/src/elementitem_p.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/engine.h:29, from /build/avogadro-1.2.0/libavogadro/src/engine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/extension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/extension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extension.cpp [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/fragment.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/fragment.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/fragment.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/plugin.h:29, from /build/avogadro-1.2.0/libavogadro/src/extension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/libavogadro/src/fragment.h:28, from /build/avogadro-1.2.0/libavogadro/src/fragment.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glhit.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/glhit.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/glhit.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/glhit.h:30, from /build/avogadro-1.2.0/libavogadro/src/glhit.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/global.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/global.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/global.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/libavogadro/src/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/global.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glpainter_p.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/glpainter_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/glpainter_p.h:32, from /build/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp:31: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glwidget.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/glwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/glwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/camera.h:35, from /build/avogadro-1.2.0/libavogadro/src/glwidget.cpp:32: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/idlist.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/idlist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/idlist.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/idlist.h:28, from /build/avogadro-1.2.0/libavogadro/src/idlist.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/mesh.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/mesh.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/mesh.cpp [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/meshgenerator.cpp.o [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/molecule.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/meshgenerator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/molecule.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/molecule.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/libavogadro/src/mesh.h:30, from /build/avogadro-1.2.0/libavogadro/src/mesh.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/libavogadro/src/molecule.h:29, from /build/avogadro-1.2.0/libavogadro/src/molecule.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/meshgenerator.h:30, from /build/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moleculefile.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moleculefile.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/moleculefile.cpp [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/navigate.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/navigate.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/navigate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/moleculefile.h:30, from /build/avogadro-1.2.0/libavogadro/src/moleculefile.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/navigate.h:28, from /build/avogadro-1.2.0/libavogadro/src/navigate.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/neighborlist.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/neighborlist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/neighborlist.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/neighborlist.h:30, from /build/avogadro-1.2.0/libavogadro/src/neighborlist.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/painter.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/painter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/painter.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/painter.h:32, from /build/avogadro-1.2.0/libavogadro/src/painter.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/periodictablescene_p.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qgraphicsscene.h:45, from /usr/include/qt4/QtGui/QGraphicsScene:1, from /build/avogadro-1.2.0/libavogadro/src/periodictablescene_p.h:28, from /build/avogadro-1.2.0/libavogadro/src/periodictablescene_p.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /build/avogadro-1.2.0/libavogadro/src/mesh.cpp: In constructor 'Avogadro::Mesh::Mesh(QObject*)': /build/avogadro-1.2.0/libavogadro/src/mesh.cpp:38:30: warning: conversion from 'long unsigned int' to 'unsigned int' changes value from '18446744073709551615' to '4294967295' [-Woverflow] m_lock(new QReadWriteLock) ^ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictableview.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/periodictableview.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/periodictableview.cpp [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotaxis.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/plotaxis.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/plotaxis.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/periodictableview.h:28, from /build/avogadro-1.2.0/libavogadro/src/periodictableview.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /build/avogadro-1.2.0/libavogadro/src/plotaxis.h:32, from /build/avogadro-1.2.0/libavogadro/src/plotaxis.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotobject.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/plotobject.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/plotobject.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /build/avogadro-1.2.0/libavogadro/src/plotobject.h:32, from /build/avogadro-1.2.0/libavogadro/src/plotobject.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotpoint.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/plotpoint.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/plotpoint.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/plotpoint.h:32, from /build/avogadro-1.2.0/libavogadro/src/plotpoint.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotwidget.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/plotwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/plotwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plotaxis.h:32, from /build/avogadro-1.2.0/libavogadro/src/plotwidget.h:32, from /build/avogadro-1.2.0/libavogadro/src/plotwidget.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plugin.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/plugin.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/plugin.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/plugin.h:29, from /build/avogadro-1.2.0/libavogadro/src/plugin.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pluginmanager.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pluginmanager.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/pluginmanager.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/pluginmanager.h:30, from /build/avogadro-1.2.0/libavogadro/src/pluginmanager.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitive.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/primitive.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/primitive.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/libavogadro/src/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/primitive.h:31, from /build/avogadro-1.2.0/libavogadro/src/primitive.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Linking CXX shared library ../../../../../lib/libavogadro_OpenQube.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenQube.dir/link.txt --verbose=1 [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitivelist.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/primitivelist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/primitivelist.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/primitivelist.h:28, from /build/avogadro-1.2.0/libavogadro/src/primitivelist.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libavogadro_OpenQube.so.0 -o ../../../../../lib/libavogadro_OpenQube.so.0.1.0 CMakeFiles/OpenQube.dir/atom.cpp.o CMakeFiles/OpenQube.dir/basisset.cpp.o CMakeFiles/OpenQube.dir/basissetloader.cpp.o CMakeFiles/OpenQube.dir/cube.cpp.o CMakeFiles/OpenQube.dir/gamessukout.cpp.o CMakeFiles/OpenQube.dir/gamessus.cpp.o CMakeFiles/OpenQube.dir/orca.cpp.o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o CMakeFiles/OpenQube.dir/gaussianset.cpp.o CMakeFiles/OpenQube.dir/molden.cpp.o CMakeFiles/OpenQube.dir/molecule.cpp.o CMakeFiles/OpenQube.dir/mopacaux.cpp.o CMakeFiles/OpenQube.dir/slaterset.cpp.o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -lQtCore -lQtGui [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/protein.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/protein.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/protein.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/protein.h:28, from /build/avogadro-1.2.0/libavogadro/src/protein.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/readfilethread_p.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/readfilethread_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/readfilethread_p.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qthread.h:45, from /usr/include/qt4/QtCore/QThread:1, from /build/avogadro-1.2.0/libavogadro/src/readfilethread_p.h:26, from /build/avogadro-1.2.0/libavogadro/src/readfilethread_p.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/residue.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/residue.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/residue.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/fragment.h:28, from /build/avogadro-1.2.0/libavogadro/src/residue.h:29, from /build/avogadro-1.2.0/libavogadro/src/residue.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/sphere_p.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/sphere_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/sphere_p.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/sphere_p.h:30, from /build/avogadro-1.2.0/libavogadro/src/sphere_p.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textrenderer_p.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/textrenderer_p.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/textrenderer_p.h:31, from /build/avogadro-1.2.0/libavogadro/src/textrenderer_p.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../../lib/libavogadro_OpenQube.so.0 ../../../../../lib/libavogadro_OpenQube.so make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 20%] Built target OpenQube make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/DependInfo.cmake --color= Scanning dependencies of target qube make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 20%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/qube.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/qube.dir/qube.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/iostream:38, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/textmatrixeditor.cpp [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/tool.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/tool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/textmatrixeditor.h:30, from /build/avogadro-1.2.0/libavogadro/src/textmatrixeditor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/tool.h:28, from /build/avogadro-1.2.0/libavogadro/src/tool.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/toolgroup.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/toolgroup.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/toolgroup.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /build/avogadro-1.2.0/libavogadro/src/toolgroup.h:28, from /build/avogadro-1.2.0/libavogadro/src/toolgroup.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/undosequence.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/undosequence.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/undosequence.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /build/avogadro-1.2.0/libavogadro/src/undosequence.h:28, from /build/avogadro-1.2.0/libavogadro/src/undosequence.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/zmatrix.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/zmatrix.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/zmatrix.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/libavogadro/src/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/zmatrix.h:28, from /build/avogadro-1.2.0/libavogadro/src/zmatrix.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/pythoninterpreter.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/pythoninterpreter.h:28, from /build/avogadro-1.2.0/libavogadro/src/pythoninterpreter.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonscript.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythonscript.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/pythonscript.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/pythonscript.h:29, from /build/avogadro-1.2.0/libavogadro/src/pythonscript.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonerror.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythonerror.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/pythonerror.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/pythonerror.h:28, from /build/avogadro-1.2.0/libavogadro/src/pythonerror.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythontool_p.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythontool_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/pythontool_p.h:32, from /build/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Linking CXX executable ../../../../../bin/qube cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/qube.dir/link.txt --verbose=1 /usr/bin/c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -rdynamic CMakeFiles/qube.dir/qube.cpp.o -o ../../../../../bin/qube -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../../lib/libavogadro_OpenQube.so.0.1.0 -lQtOpenGL -lQtGui -lQtCore make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 21%] Built target qube [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonengine_p.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/pythonengine_p.cpp [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonextension_p.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/pythonengine_p.h:32, from /build/avogadro-1.2.0/libavogadro/src/pythonengine_p.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/libavogadro/src/pythonextension_p.h:33, from /build/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_animation.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_animation.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_animation.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/animation.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_animation.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_atom.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_atom.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_atom.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/atom.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_atom.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_bond.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_bond.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_bond.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/bond.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_bond.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_color.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_color.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_color.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/color.h:32, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_color.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_colorbutton.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/colorbutton.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_colorbutton.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_cube.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_cube.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_cube.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/cube.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_cube.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_dockextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_dockextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_dockextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/dockextension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_dockextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_dockwidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/dockwidget.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_dockwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_elementdetail_p.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qgraphicsitem.h:45, from /usr/include/qt4/QtGui/QGraphicsItem:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/elementdetail_p.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_elementdetail_p.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_elementtranslator.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/elementtranslator.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_elementtranslator.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_engine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_engine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_engine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/engine.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_engine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_extension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_extension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_extension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_extension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_fragment.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_fragment.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_fragment.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/fragment.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_fragment.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_glwidget.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_glwidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_glwidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/glwidget.h:32, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_glwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_mesh.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_mesh.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_mesh.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/mesh.h:30, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_mesh.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_meshgenerator.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/meshgenerator.h:30, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_meshgenerator.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_molecule.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_molecule.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_molecule.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/molecule.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_molecule.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_moleculefile.cxx [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_periodictablescene_p.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/moleculefile.h:30, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_moleculefile.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qgraphicsscene.h:45, from /usr/include/qt4/QtGui/QGraphicsScene:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/periodictablescene_p.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_periodictablescene_p.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_periodictableview.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/periodictableview.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_periodictableview.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_plotwidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plotaxis.h:32, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/plotwidget.h:32, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_plotwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_plugin.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_plugin.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_plugin.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_plugin.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pluginmanager.cxx [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_primitive.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_primitive.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_primitive.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/pluginmanager.h:30, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pluginmanager.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_primitive.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_protein.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_protein.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_protein.cxx [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/protein.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_protein.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_residue.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_residue.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_residue.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qthread.h:45, from /usr/include/qt4/QtCore/QThread:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/readfilethread_p.h:26, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/fragment.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/residue.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_residue.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_textmatrixeditor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/textmatrixeditor.h:30, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_textmatrixeditor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_tool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_tool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_tool.cxx [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_toolgroup.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/tool.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_tool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/toolgroup.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_toolgroup.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_zmatrix.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/zmatrix.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_zmatrix.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonerror.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/pythonengine_p.h:32, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/pythonerror.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonerror.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonextension_p.cxx [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/pythonextension_p.h:33, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythonextension_p.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythontool_p.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/../../../libavogadro/src/pythontool_p.h:32, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/moc_pythontool_p.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/qrc_pythontool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/qrc_pythontool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Linking CXX shared library ../../lib/libavogadro.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libavogadro.so.1 -o ../../lib/libavogadro.so.1.2.0 CMakeFiles/avogadro.dir/animation.cpp.o CMakeFiles/avogadro.dir/atom.cpp.o CMakeFiles/avogadro.dir/bond.cpp.o CMakeFiles/avogadro.dir/camera.cpp.o CMakeFiles/avogadro.dir/color.cpp.o CMakeFiles/avogadro.dir/colorbutton.cpp.o CMakeFiles/avogadro.dir/cube.cpp.o CMakeFiles/avogadro.dir/cylinder_p.cpp.o CMakeFiles/avogadro.dir/dockextension.cpp.o CMakeFiles/avogadro.dir/dockwidget.cpp.o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o CMakeFiles/avogadro.dir/elementitem_p.cpp.o CMakeFiles/avogadro.dir/elementtranslator.cpp.o CMakeFiles/avogadro.dir/engine.cpp.o CMakeFiles/avogadro.dir/extension.cpp.o CMakeFiles/avogadro.dir/fragment.cpp.o CMakeFiles/avogadro.dir/glhit.cpp.o CMakeFiles/avogadro.dir/global.cpp.o CMakeFiles/avogadro.dir/glpainter_p.cpp.o CMakeFiles/avogadro.dir/glwidget.cpp.o CMakeFiles/avogadro.dir/idlist.cpp.o CMakeFiles/avogadro.dir/mesh.cpp.o CMakeFiles/avogadro.dir/meshgenerator.cpp.o CMakeFiles/avogadro.dir/molecule.cpp.o CMakeFiles/avogadro.dir/moleculefile.cpp.o CMakeFiles/avogadro.dir/navigate.cpp.o CMakeFiles/avogadro.dir/neighborlist.cpp.o CMakeFiles/avogadro.dir/painter.cpp.o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o CMakeFiles/avogadro.dir/periodictableview.cpp.o CMakeFiles/avogadro.dir/plotaxis.cpp.o CMakeFiles/avogadro.dir/plotobject.cpp.o CMakeFiles/avogadro.dir/plotpoint.cpp.o CMakeFiles/avogadro.dir/plotwidget.cpp.o CMakeFiles/avogadro.dir/plugin.cpp.o CMakeFiles/avogadro.dir/pluginmanager.cpp.o CMakeFiles/avogadro.dir/primitive.cpp.o CMakeFiles/avogadro.dir/primitivelist.cpp.o CMakeFiles/avogadro.dir/protein.cpp.o CMakeFiles/avogadro.dir/readfilethread_p.cpp.o CMakeFiles/avogadro.dir/residue.cpp.o CMakeFiles/avogadro.dir/sphere_p.cpp.o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o CMakeFiles/avogadro.dir/tool.cpp.o CMakeFiles/avogadro.dir/toolgroup.cpp.o CMakeFiles/avogadro.dir/undosequence.cpp.o CMakeFiles/avogadro.dir/zmatrix.cpp.o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o CMakeFiles/avogadro.dir/pythonscript.cpp.o CMakeFiles/avogadro.dir/pythonerror.cpp.o CMakeFiles/avogadro.dir/pythontool_p.cpp.o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o CMakeFiles/avogadro.dir/moc_animation.cxx.o CMakeFiles/avogadro.dir/moc_atom.cxx.o CMakeFiles/avogadro.dir/moc_bond.cxx.o CMakeFiles/avogadro.dir/moc_color.cxx.o CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o CMakeFiles/avogadro.dir/moc_cube.cxx.o CMakeFiles/avogadro.dir/moc_dockextension.cxx.o CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o CMakeFiles/avogadro.dir/moc_engine.cxx.o CMakeFiles/avogadro.dir/moc_extension.cxx.o CMakeFiles/avogadro.dir/moc_fragment.cxx.o CMakeFiles/avogadro.dir/moc_glwidget.cxx.o CMakeFiles/avogadro.dir/moc_mesh.cxx.o CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o CMakeFiles/avogadro.dir/moc_molecule.cxx.o CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o CMakeFiles/avogadro.dir/moc_plugin.cxx.o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o CMakeFiles/avogadro.dir/moc_primitive.cxx.o CMakeFiles/avogadro.dir/moc_protein.cxx.o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o CMakeFiles/avogadro.dir/moc_residue.cxx.o CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o CMakeFiles/avogadro.dir/moc_tool.cxx.o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -lopenbabel -lQtOpenGL -lQtGui -lQtCore -lGL -lGLU -lGLEW -lpython2.7 -lboost_python engines/bsdyengine.a tools/navigatetool.a colors/elementcolor.a -lopenbabel -lQtGui -lQtCore -lGL -lGLU cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src && /usr/bin/cmake -E cmake_symlink_library ../../lib/libavogadro.so.1.2.0 ../../lib/libavogadro.so.1 ../../lib/libavogadro.so make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 25%] Built target avogadro make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 25%] Generating ui_qtaimsettingswidget.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_qtaimsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/qtaimsettingswidget.ui [ 25%] Generating ui_cartoonsettingswidget.h [ 25%] Generating ui_hbondsettingswidget.h [ 25%] Generating moc_ribbonengine.cxx [ 25%] Generating moc_forceengine.cxx [ 25%] Generating ui_labelsettingswidget.h [ 25%] Generating ui_ribbonsettingswidget.h [ 25%] Generating ui_wiresettingswidget.h [ 25%] Generating moc_qtaimengine.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_cartoonsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/cartoonsettingswidget.ui cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_hbondsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/hbondsettingswidget.ui [ 25%] Generating moc_hbondengine.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_labelsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/labelsettingswidget.ui make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/depend [ 25%] Generating ui_ringsettingswidget.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx_parameters [ 25%] Generating moc_polygonengine.cxx [ 25%] Generating ui_sticksettingswidget.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_ribbonsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/ribbonsettingswidget.ui cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_wiresettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/wiresettingswidget.ui make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_ringsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/ringsettingswidget.ui [ 25%] Generating ui_surfacesettingswidget.h [ 25%] Generating ui_spheresettingswidget.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_sticksettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/sticksettingswidget.ui cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_surfacesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/surfacesettingswidget.ui cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_spheresettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/spheresettingswidget.ui make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 25%] Generating ui_axessettingswidget.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_axessettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/axessettingswidget.ui [ 25%] Generating moc_cartoonengine.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx_parameters [ 25%] Generating moc_axesengine.cxx [ 25%] Generating moc_stickengine.cxx [ 25%] Generating moc_wireengine.cxx [ 25%] Generating ui_dipolesettingswidget.h [ 25%] Generating moc_sphereengine.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx_parameters [ 25%] Generating moc_ringengine.cxx [ 25%] Generating moc_surfaceengine.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx_parameters [ 25%] Generating moc_labelengine.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/ui_dipolesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/dipolesettingswidget.ui cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx_parameters make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 25%] Generating moc_dipoleengine.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx_parameters [ 25%] Generating moc_simplewireengine.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/forceengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/ringengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= Scanning dependencies of target forceengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/build cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= Scanning dependencies of target polygonengine cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/forceengine.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forceengine.dir/forceengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/polygonengine.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/polygonengine.dir/polygonengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp Scanning dependencies of target cartoonengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/forceengine.h:28, from /build/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/polygonengine.h:28, from /build/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target hbondengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' Scanning dependencies of target surfaceengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' Scanning dependencies of target ribbonengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp Scanning dependencies of target simplewireengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' Scanning dependencies of target wireengine make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/hbondengine.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hbondengine.dir/hbondengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp Scanning dependencies of target labelengine Scanning dependencies of target qtaimengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' Scanning dependencies of target ringengine [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp Scanning dependencies of target dipoleengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/hbondengine.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' Scanning dependencies of target stickengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o Scanning dependencies of target sphereengine make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.h:30, from /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.h:28, from /build/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/wireengine.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/wireengine.dir/wireengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o Scanning dependencies of target axesengine cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/labelengine.cpp.o In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.h:28, from /build/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/labelengine.dir/labelengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/ringengine.cpp.o [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ringengine.dir/ringengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/wireengine.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/stickengine.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/stickengine.dir/stickengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.h:31, from /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/ringengine.h:28, from /build/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/sphereengine.cpp.o In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/sphereengine.dir/sphereengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/stickengine.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/sphereengine.h:30, from /build/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/axesengine.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/axesengine.dir/axesengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/axesengine.h:28, from /build/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/simplewireengine.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/moc_forceengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Linking CXX shared module ../../../lib/polygonengine.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/polygonengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/polygonengine.so CMakeFiles/polygonengine.dir/polygonengine.cpp.o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 29%] Built target polygonengine make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 29%] Generating qrc_selectrotatetool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name selectrotatetool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.qrc [ 29%] Generating moc_selectrotatetool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx_parameters [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/ribbonengine.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= Scanning dependencies of target selectrotatetool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 29%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.h:33, from /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/sphereengine.h:30, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/surfaceengine.h:30, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/moc_ringengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 31%] Linking CXX shared module ../../../lib/simplewireengine.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/simplewireengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/simplewireengine.so CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/hbondengine.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 31%] Built target simplewireengine make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 31%] Generating qrc_autorotatetool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name autorotatetool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.qrc [ 31%] Linking CXX shared module ../../../lib/forceengine.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/forceengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/forceengine.so CMakeFiles/forceengine.dir/forceengine.cpp.o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 31%] Generating moc_autorotatetool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/moc_axesengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target autorotatetool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 31%] Built target forceengine make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend [ 31%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.h:28, from /build/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 31%] Generating qrc_clickmeasuretool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name clickmeasuretool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.qrc [ 31%] Generating moc_clickmeasuretool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx_parameters [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/moc_stickengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/stickengine.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake --color= Scanning dependencies of target clickmeasuretool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.h:41, from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 31%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.h:31, from /build/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 31%] Linking CXX shared module ../../../lib/dipoleengine.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/dipoleengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/dipoleengine.so CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 32%] Linking CXX shared module ../../../lib/surfaceengine.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/surfaceengine.so CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 32%] Linking CXX shared module ../../../lib/ribbonengine.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ribbonengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/ribbonengine.so CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 32%] Built target dipoleengine make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 32%] Generating qrc_bondcentrictool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name bondcentrictool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.qrc [ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx [ 33%] Generating moc_bondcentrictool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx_parameters In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/qtaimengine.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 33%] Linking CXX shared module ../../../lib/sphereengine.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/sphereengine.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/sphereengine.so CMakeFiles/sphereengine.dir/sphereengine.cpp.o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 33%] Built target surfaceengine make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 33%] Generating qrc_autoopttool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name autoopttool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/autoopttool.qrc [ 33%] Generating moc_autoopttool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx_parameters [ 33%] Generating moc_skeletontree.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx_parameters [ 33%] Linking CXX shared module ../../../lib/ringengine.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ringengine.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/ringengine.so CMakeFiles/ringengine.dir/ringengine.cpp.o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 33%] Built target ribbonengine make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 33%] Generating qrc_drawtool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name drawtool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/drawtool.qrc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= [ 33%] Generating moc_drawtool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= Scanning dependencies of target bondcentrictool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build Scanning dependencies of target autoopttool make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build Scanning dependencies of target drawtool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/autoopttool.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/autoopttool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /build/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.h:34, from /build/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawtool.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/drawtool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp [ 33%] Built target sphereengine make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/libavogadro/src/tools/autoopttool.h:28, from /build/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /build/avogadro-1.2.0/libavogadro/src/tools/drawtool.h:30, from /build/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp:30: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 33%] Generating qrc_aligntool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name aligntool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/aligntool.qrc [ 33%] Generating moc_aligntool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 33%] Built target ringengine make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 33%] Generating qrc_manipulatetool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name manipulatetool -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.qrc [ 33%] Generating moc_manipulatetool.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx_parameters [ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/moc_wireengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/wireengine.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target aligntool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/aligntool.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/aligntool.dir/aligntool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp [ 33%] Linking CXX shared module ../../../lib/hbondengine.so In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /build/avogadro-1.2.0/libavogadro/src/tools/aligntool.h:28, from /build/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/hbondengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/hbondengine.so CMakeFiles/hbondengine.dir/hbondengine.cpp.o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 33%] Generating ui_manipulatesettingswidget.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/ui_manipulatesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/tools/manipulatesettingswidget.ui cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= [ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/moc_labelengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/labelengine.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target manipulatetool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.h:27, from /build/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 34%] Linking CXX shared module ../../../lib/axesengine.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/axesengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/axesengine.so CMakeFiles/axesengine.dir/axesengine.cpp.o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 34%] Linking CXX shared module ../../../lib/stickengine.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/stickengine.dir/link.txt --verbose=1 [ 34%] Built target hbondengine make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/stickengine.so CMakeFiles/stickengine.dir/stickengine.cpp.o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 34%] Generating moc_gl2psextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/DependInfo.cmake --color= Scanning dependencies of target gl2psextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 35%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/gl2psextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/gl2psextension.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/gl2psextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 35%] Built target axesengine make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 35%] Generating ui_supercelldialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.ui [ 35%] Generating moc_supercellextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx_parameters [ 35%] Generating moc_supercelldialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx_parameters make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 35%] Built target stickengine make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= [ 35%] Generating ui_shaderdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_shaderdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/shaderdialog.ui [ 35%] Generating moc_shaderextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= Scanning dependencies of target supercellextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 36%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercellextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/supercellextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/supercellextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/supercellextension.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/supercellextension.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target shaderextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 36%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/shaderextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dshaderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/shaderextension.dir/shaderextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/shaderextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/shaderextension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/shaderextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/autorotatetool.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 36%] Linking CXX shared module ../../../lib/qtaimengine.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/qtaimengine.so CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 36%] Built target qtaimengine [ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:33, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 37%] Generating ui_fileimportdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_fileimportdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/fileimportdialog.ui [ 37%] Generating moc_fileimportextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx_parameters [ 38%] Linking CXX shared module ../../../lib/wireengine.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/wireengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/wireengine.so CMakeFiles/wireengine.dir/wireengine.cpp.o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --color= Scanning dependencies of target fileimportextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build [ 38%] Linking CXX shared module ../../../lib/labelengine.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/labelengine.dir/link.txt --verbose=1 make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/labelengine.so CMakeFiles/labelengine.dir/labelengine.cpp.o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/fileimportextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_fileimportdialog.h:12, from /build/avogadro-1.2.0/libavogadro/src/extensions/fileimportextension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/fileimportextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 39%] Built target wireengine make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 39%] Generating moc_h2methylextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' Scanning dependencies of target h2methylextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 39%] Built target labelengine make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/h2methylextension.cpp [ 39%] Generating ui_molecularpropdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_molecularpropdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/molecularpropdialog.ui In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/h2methylextension.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/h2methylextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 39%] Generating moc_molecularpropextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= Scanning dependencies of target molecularpropextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/clickmeasuretool.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 39%] Linking CXX shared module ../../../lib/autorotatetool.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autorotatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/autorotatetool.so CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 39%] Building C object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.h:39, from /build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c:36: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 39%] Built target autorotatetool make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 39%] Generating moc_propextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx_parameters [ 39%] Generating __/tools/moc_skeletontree.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/__/tools && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx_parameters [ 40%] Generating moc_propmodel.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx_parameters [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= [ 40%] Linking CXX shared module ../../../lib/selectrotatetool.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectrotatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/selectrotatetool.so CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU Scanning dependencies of target propextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 40%] Built target selectrotatetool make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 40%] Generating moc_invertchiralextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= Scanning dependencies of target invertchiralextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx [ 41%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawcommand.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/drawcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/autoopttool.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:31, from /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 41%] Linking CXX shared module ../../../lib/clickmeasuretool.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/clickmeasuretool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/clickmeasuretool.so CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercelldialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h:12, from /build/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dshaderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/shaderextension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gl2psextension.h:26, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 41%] Built target clickmeasuretool make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx [ 41%] Generating qrc_cartesianextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name cartesianextension -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.qrc In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/h2methylextension.h:26, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 41%] Generating moc_cartesianextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx_parameters [ 41%] Generating ui_cartesianeditor.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_cartesianeditor.h /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianeditor.ui cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= Scanning dependencies of target cartesianextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 41%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/moc_aligntool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/aligntool.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_fileimportdialog.h:12, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/fileimportextension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 41%] Linking CXX shared module ../../../lib/gl2psextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/gl2psextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/gl2psextension.so CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp: In constructor 'Avogadro::AddBondDrawCommandPrivate::AddBondDrawCommandPrivate()': /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:533:53: warning: conversion from 'long unsigned int' to 'unsigned int' changes value from '18446744073709551615' to '4294967295' [-Woverflow] postCommandEnd(0) {} ^ /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:533:53: warning: conversion from 'long unsigned int' to 'unsigned int' changes value from '18446744073709551615' to '4294967295' [-Woverflow] make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 41%] Built target gl2psextension make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 41%] Generating ui_pythonterminalwidget.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_pythonterminalwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminalwidget.ui [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/invertchiralextension.h:25, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 42%] Generating moc_pythonterminal.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx_parameters [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercellextension.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 43%] Generating moc_highlighter.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= [ 43%] Linking CXX shared module ../../../lib/shaderextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/shaderextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/shaderextension.so CMakeFiles/shaderextension.dir/shaderextension.cpp.o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -lGLEW [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx Scanning dependencies of target pythonterminal make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.h:30, from /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 43%] Linking CXX shared module ../../../lib/aligntool.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/aligntool.dir/link.txt --verbose=1 [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx [ 44%] Linking CXX shared module ../../../lib/h2methylextension.so In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/h2methylextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/aligntool.so CMakeFiles/aligntool.dir/aligntool.cpp.o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/h2methylextension.so CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 44%] Built target shaderextension make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 44%] Generating ui_conformersearchdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_conformersearchdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.ui [ 44%] Generating moc_forcefieldextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx_parameters [ 44%] Generating moc_forcefielddialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx_parameters make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 44%] Built target h2methylextension make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 45%] Generating moc_constraintsdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx_parameters [ 45%] Generating moc_selectextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 45%] Built target aligntool make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 45%] Generating ui_insertpeptidedialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_insertpeptidedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/insertpeptidedialog.ui [ 45%] Generating moc_insertpeptideextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx_parameters Scanning dependencies of target selectextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build [ 45%] Generating moc_constraintsmodel.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx_parameters make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/selectextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectextension.dir/selectextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/selectextension.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h:12, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercelldialog.h:23, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target insertpeptideextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build [ 45%] Generating moc_conformersearchdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx_parameters make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 45%] Generating ui_forcefielddialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_forcefielddialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.ui [ 45%] Generating ui_constraintsdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_constraintsdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.ui cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= [ 45%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawtool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/drawtool.h:30, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target forcefieldextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 45%] Linking CXX shared module ../../../lib/fileimportextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileimportextension.dir/link.txt --verbose=1 [ 45%] Linking CXX shared module ../../../lib/invertchiralextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/invertchiralextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/fileimportextension.so CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/invertchiralextension.so CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 46%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 46%] Built target invertchiralextension make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 46%] Built target fileimportextension make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend [ 46%] Generating moc_hydrogensextension.cxx make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx_parameters [ 46%] Generating ui_insertdnadialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_insertdnadialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnadialog.ui [ 46%] Generating moc_insertdnaextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= [ 46%] Linking CXX shared module ../../../lib/autoopttool.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autoopttool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/autoopttool.so CMakeFiles/autoopttool.dir/autoopttool.cpp.o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU Scanning dependencies of target hydrogensextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build Scanning dependencies of target insertdnaextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.h:22, from /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 46%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 46%] Linking CXX shared module ../../../lib/supercellextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/supercellextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/supercellextension.so CMakeFiles/supercellextension.dir/supercellextension.cpp.o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 46%] Built target autoopttool make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 46%] Generating moc_networkfetchextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/DependInfo.cmake --color= [ 46%] Linking CXX shared module ../../../lib/drawtool.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/drawtool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/drawtool.so CMakeFiles/drawtool.dir/drawtool.cpp.o CMakeFiles/drawtool.dir/drawcommand.cpp.o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU Scanning dependencies of target networkfetchextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/networkfetchextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/networkfetchextension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/networkfetchextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 46%] Built target supercellextension make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 46%] Generating qrc_animationextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name animationextension -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx /build/avogadro-1.2.0/libavogadro/src/extensions/animationextension.qrc [ 46%] Generating moc_animationextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx_parameters [ 46%] Generating moc_animationdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx_parameters [ 46%] Linking CXX shared module ../../../lib/molecularpropextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/molecularpropextension.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 47%] Generating ui_animationdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_animationdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.ui cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/molecularpropextension.so CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork [ 47%] Built target drawtool make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 47%] Generating ui_povraydialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_povraydialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.ui [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propmodel.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/propmodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp [ 47%] Generating moc_povrayextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx_parameters In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/cmath:41, from /usr/include/c++/8/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target animationextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/animationextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/animationextension.cpp [ 48%] Generating moc_povraydialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx_parameters In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/animationextension.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/animationextension.cpp:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 48%] Built target molecularpropextension make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 48%] Generating ui_insertfragmentdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_insertfragmentdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.ui [ 48%] Generating moc_insertfragmentextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx_parameters Scanning dependencies of target povrayextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povrayextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povrayextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.h:30, from /build/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 49%] Generating moc_insertfragmentdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx_parameters [ 49%] Generating moc_sortfiltertreeproxymodel.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertfragmentextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 49%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 49%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/eyecandy.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:82, from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/cartesianextension.h:26, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/moc_selectextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/selectextension.h:26, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 50%] Linking CXX shared module ../../../lib/hydrogensextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/hydrogensextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/hydrogensextension.so CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povpainter.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povpainter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp [ 50%] Linking CXX shared module ../../../lib/cartoonengine.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartoonengine.dir/link.txt --verbose=1 In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/cartoonengine.so CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -L/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 50%] Built target hydrogensextension make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 50%] Generating ui_vrmldialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/ui_vrmldialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.ui /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.ui: Warning: Buddy assignment: 'dimX' is not a valid widget. [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx [ 50%] Generating moc_vrmlextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx_parameters In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/networkfetchextension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 50%] Linking CXX shared module ../../../lib/selectextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/selectextension.so CMakeFiles/selectextension.dir/selectextension.cpp.o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 50%] Generating moc_vrmldialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx_parameters [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 50%] Built target cartoonengine make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/DependInfo.cmake --color= [ 51%] Generating ui_symmetrydialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/ui_symmetrydialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetrydialog.ui [ 51%] Linking CXX shared module ../../../lib/cartesianextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartesianextension.dir/link.txt --verbose=1 [ 51%] Generating moc_symmetryextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx_parameters /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/cartesianextension.so CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel Scanning dependencies of target vrmlextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.h:30, from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' Scanning dependencies of target symmetryextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build [ 51%] Built target selectextension make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 51%] Generating ui_ceviewoptionswidget.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceviewoptionswidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.ui [ 51%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 52%] Generating moc_crystallographyextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx_parameters [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/animationdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 52%] Generating moc_crystalpastedialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx_parameters make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 52%] Built target cartesianextension make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 52%] Generating ui_tab_cd.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_cd.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_cd.ui [ 52%] Generating moc_spectraextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx_parameters [ 52%] Generating ui/moc_ceabstractdockwidget.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx_parameters [ 52%] Generating ui/moc_ceabstracteditor.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx_parameters [ 52%] Generating moc_spectradialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx_parameters [ 52%] Generating ui/moc_cecoordinateeditor.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx_parameters [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/highlighter.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/highlighter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.h:22, from /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 52%] Generating ui/moc_cematrixeditor.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx_parameters [ 52%] Generating moc_spectratype.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx_parameters [ 52%] Generating ui/moc_ceparametereditor.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx_parameters [ 53%] Generating moc_abstract_ir.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx_parameters [ 53%] Generating ui/moc_ceslabbuilder.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx_parameters [ 54%] Linking CXX shared module ../../../lib/networkfetchextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/networkfetchextension.dir/link.txt --verbose=1 [ 54%] Generating ui/moc_cetranslatewidget.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx_parameters /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/networkfetchextension.so CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork [ 54%] Generating moc_ir.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx_parameters [ 55%] Generating ui/moc_ceviewoptionswidget.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx_parameters [ 55%] Generating moc_nmr.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx_parameters [ 55%] Generating ui_crystalpastedialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_crystalpastedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.ui [ 55%] Generating ui_cecoordinateeditor.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_cecoordinateeditor.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.ui [ 55%] Generating ui_cematrixeditor.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_cematrixeditor.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.ui [ 55%] Generating ui_ceparametereditor.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceparametereditor.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.ui [ 55%] Generating moc_dos.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx_parameters [ 55%] Generating ui_ceslabbuilder.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceslabbuilder.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.ui [ 55%] Generating ui_cetranslatewidget.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui_cetranslatewidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.ui cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 55%] Generating moc_uv.cxx [ 55%] Built target networkfetchextension cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx_parameters make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 55%] Generating ui_vibrationwidget.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_vibrationwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.ui [ 55%] Generating moc_vibrationextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx_parameters [ 55%] Generating moc_cd.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx_parameters [ 55%] Generating moc_vibrationwidget.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx_parameters Scanning dependencies of target crystallographyextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build [ 55%] Generating moc_raman.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx_parameters make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 55%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/avospglib.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/avospglib.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:82, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= [ 55%] Generating ui_spectradialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_spectradialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.ui [ 55%] Generating ui_tab_ir_raman.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_ir_raman.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_ir_raman.ui [ 56%] Generating ui_tab_nmr.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_nmr.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_nmr.ui Scanning dependencies of target vibrationextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp [ 56%] Generating ui_tab_dos.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_dos.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_dos.ui In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 56%] Generating ui_tab_uv.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_uv.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_uv.ui [ 57%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target spectraextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 57%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectraextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectraextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/povpainter.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/povpainter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.h:4, from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/pythonterminal.h:30, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/bits/stl_algobase.h:59, from /usr/include/c++/8/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertdnaextension.h:22, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 58%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertpeptideextension.h:25, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 58%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/../../../../../libavogadro/src/extensions/symmetry/symmetryextension.h:25, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 58%] Linking CXX shared module ../../../lib/insertdnaextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertdnaextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertdnaextension.so CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/propextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/cmath:41, from /usr/include/c++/8/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/propextension.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 58%] Built target insertdnaextension make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 59%] Generating ui_orbitalsettingsdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/ui_orbitalsettingsdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.ui [ 59%] Generating moc_orbitalextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx_parameters [ 59%] Generating moc_orbitalsettingsdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx_parameters [ 59%] Generating moc_orbitaltablemodel.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx_parameters [ 59%] Generating moc_orbitalwidget.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx_parameters [ 59%] Generating moc_vdwsurface.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx_parameters [ 59%] Generating qtiocompressor/moc_qtiocompressor.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx_parameters [ 59%] Generating moc_htmldelegate.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx_parameters [ 59%] Linking CXX shared module ../../../lib/insertpeptideextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertpeptideextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertpeptideextension.so CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 59%] Generating ui_orbitalwidget.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/ui_orbitalwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.ui cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= [ 59%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectradialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectradialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target orbitalextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build [ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 59%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 59%] Built target insertpeptideextension make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 59%] Generating ui_surfacedialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/ui_surfacedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.ui [ 59%] Generating moc_surfaceextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx_parameters [ 59%] Generating moc_surfacedialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= [ 59%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ceundo.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target surfaceextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 59%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.h:30, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 59%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.h:30, from /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 59%] Linking CXX shared module ../../../../lib/symmetryextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/cmake -E cmake_link_script CMakeFiles/symmetryextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/symmetryextension.so CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU libmsym/libmsym.a [ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povraydialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povraydialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.h:30, from /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 59%] Built target symmetryextension make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 59%] Generating ui_swcntbuilderwidget.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/ui_swcntbuilderwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.ui [ 59%] Generating moc_swcntbuilderextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx_parameters [ 59%] Generating moc_swcntbuilderwidget.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx_parameters [ 59%] Generating moc_avotubegen.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= Scanning dependencies of target swcntbuilderextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp [ 61%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/bits/stl_algobase.h:59, from /usr/include/c++/8/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 61%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 61%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp:32: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:35, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, from /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.h:30, from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/highlighter.h:22, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:30, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povrayextension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentextension.h:25, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/trajvideomaker.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Linking CXX shared module ../../../lib/manipulatetool.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/manipulatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/manipulatetool.so CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propmodel.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/moc_propmodel.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/cmath:41, from /usr/include/c++/8/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Linking CXX shared module ../../../lib/pythonterminal.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/pythonterminal.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/pythonterminal.so CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o CMakeFiles/pythonterminal.dir/highlighter.cpp.o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lpython2.7 [ 62%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.h:30, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 62%] Built target manipulatetool make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 62%] Generating moc_qtaimextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx_parameters make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 62%] Built target pythonterminal make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend [ 62%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Generating ui_gamessefpmatchdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessefpmatchdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.ui [ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmlextension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= [ 62%] Generating moc_inputdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx_parameters In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Generating moc_gamessextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx_parameters Scanning dependencies of target qtaimextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 62%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Generating moc_gamessinputdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx_parameters [ 63%] Generating moc_gamesshighlighter.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx_parameters [ 63%] Generating moc_gamessefpmatchdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx_parameters [ 63%] Generating ui_gamessinputdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.ui cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= [ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentdialog.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target gamessextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 63%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/inputdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/inputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:26, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationextension.h:26, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:30, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationextension.h:25, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 64%] Linking CXX shared module ../../../lib/insertfragmentextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertfragmentextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertfragmentextension.so CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 64%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/moc_propextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx [ 64%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/cmath:41, from /usr/include/c++/8/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 64%] Linking CXX shared module ../../../lib/bondcentrictool.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bondcentrictool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/bondcentrictool.so CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 64%] Linking CXX shared module ../../../lib/povrayextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayextension.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/povrayextension.so CMakeFiles/povrayextension.dir/povrayextension.cpp.o CMakeFiles/povrayextension.dir/povpainter.cpp.o CMakeFiles/povrayextension.dir/povraydialog.cpp.o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 64%] Built target insertfragmentextension make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 64%] Generating ui_lammpsinputdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_lammpsinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.ui [ 64%] Generating moc_inputfileextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx_parameters [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx [ 64%] Linking CXX shared module ../../../lib/vrmlextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/vrmlextension.dir/link.txt --verbose=1 [ 65%] Generating moc_abinitinputdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx_parameters In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:26, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/vrmlextension.so CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 65%] Generating moc_daltoninputdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx_parameters [ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationdialog.h:25, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 65%] Generating moc_gamessukinputdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx_parameters make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 65%] Built target povrayextension make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 65%] Generating moc_gaussianinputdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx_parameters [ 65%] Generating ui_orcaspectra.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.ui [ 65%] Generating moc_orcaextension.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx_parameters [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:31, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 65%] Generating moc_molproinputdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx_parameters [ 65%] Generating moc_orcainputdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx_parameters make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 65%] Built target bondcentrictool make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 65%] Built target vrmlextension make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 65%] Generating moc_smartscolor.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx_parameters [ 65%] Generating moc_customcolor.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx_parameters [ 65%] Generating moc_mopacinputdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color= [ 65%] Generating moc_orcaanalysedialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx_parameters Scanning dependencies of target customcolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' Scanning dependencies of target smartscolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/build [ 65%] Generating moc_nwcheminputdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx_parameters [ 65%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/customcolor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/customcolor.dir/customcolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/customcolor.cpp make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/colors/customcolor.h:28, from /build/avogadro-1.2.0/libavogadro/src/colors/customcolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 65%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/smartscolor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/smartscolor.dir/smartscolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.h:28, from /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 66%] Generating moc_orcaspectra.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx_parameters [ 66%] Generating moc_psi4inputdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx_parameters [ 66%] Generating moc_qcheminputdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx_parameters [ 66%] Generating ui_orcainputdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/ui_orcainputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget1'. /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget2'. /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget3'. /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget4'. /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget5'. /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget6'. /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget7'. /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget8'. /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget9'. /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget10'. /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget11'. [ 66%] Generating ui_orcaanalysedialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/ui_orcaanalysedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.ui /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget1'. cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/orca /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/DependInfo.cmake --color= [ 66%] Generating moc_teracheminputdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx_parameters [ 67%] Generating moc_lammpsinputdialog.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx_parameters [ 67%] Generating ui_abinitinputdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_abinitinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.ui Scanning dependencies of target orcaextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build [ 67%] Generating ui_gaussianinputdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gaussianinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.ui [ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:26, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 67%] Generating ui_daltoninputdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_daltoninputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.ui make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 67%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaextension.cpp.o [ 67%] Generating ui_gamessukinputdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaextension.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessukinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.ui In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaextension.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaextension.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 67%] Generating ui_molproinputdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_molproinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.ui [ 67%] Generating ui_mopacinputdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_mopacinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.ui [ 67%] Generating ui_nwcheminputdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_nwcheminputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.ui [ 67%] Generating ui_psi4inputdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_psi4inputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.ui [ 68%] Generating ui_qcheminputdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_qcheminputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.ui [ 68%] Generating ui_teracheminputdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/ui_teracheminputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.ui cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= [ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.h:22, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target inputfileextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build [ 68%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 68%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 69%] Linking CXX shared module ../../../lib/animationextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/animationextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/animationextension.so CMakeFiles/animationextension.dir/animationextension.cpp.o CMakeFiles/animationextension.dir/animationdialog.cpp.o CMakeFiles/animationextension.dir/povpainter.cpp.o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 69%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 69%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/moc_customcolor.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/customcolor.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 69%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qalgorithms.h:45, from /usr/include/qt4/QtCore/qdebug.h:45, from /usr/include/qt4/QtCore/QDebug:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 69%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectratype.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectratype.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.h:24, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp:21: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 69%] Built target animationextension make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 69%] Generating moc_chargecolor.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color= Scanning dependencies of target chargecolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 69%] Linking CXX shared module ../../../../lib/vibrationextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/vibrationextension.dir/link.txt --verbose=1 [ 70%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/chargecolor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/chargecolor.dir/chargecolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/chargecolor.cpp /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/vibrationextension.so CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/colors/chargecolor.h:28, from /build/avogadro-1.2.0/libavogadro/src/colors/chargecolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Linking CXX shared module ../../../lib/propextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/propextension.dir/link.txt --verbose=1 [ 70%] Linking CXX shared module ../../../lib/customcolor.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/customcolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/propextension.so CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o CMakeFiles/propextension.dir/propmodel.cpp.o CMakeFiles/propextension.dir/propextension.cpp.o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o CMakeFiles/propextension.dir/moc_propmodel.cxx.o CMakeFiles/propextension.dir/moc_propextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/customcolor.so CMakeFiles/customcolor.dir/customcolor.cpp.o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 70%] Built target vibrationextension make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 70%] Generating ui_residuecolorsettings.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/ui_residuecolorsettings.h /build/avogadro-1.2.0/libavogadro/src/colors/residuecolorsettings.ui [ 70%] Generating moc_residuecolor.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake --color= Scanning dependencies of target residuecolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 70%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/residuecolor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/residuecolor.dir/residuecolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/residuecolor.cpp make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/colors/residuecolor.h:28, from /build/avogadro-1.2.0/libavogadro/src/colors/residuecolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Built target customcolor make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 70%] Generating moc_atomindexcolor.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake --color= Scanning dependencies of target atomindexcolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 70%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.h:28, from /build/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 70%] Built target propextension make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 70%] Generating moc_distancecolor.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color= Scanning dependencies of target distancecolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 70%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/distancecolor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/distancecolor.dir/distancecolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/distancecolor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/libavogadro/src/colors/distancecolor.h:28, from /build/avogadro-1.2.0/libavogadro/src/colors/distancecolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/smartscolor.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 71%] Linking CXX shared module ../../../lib/smartscolor.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/smartscolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/smartscolor.so CMakeFiles/smartscolor.dir/smartscolor.cpp.o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 71%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:31, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx [ 71%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/chargecolor.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 71%] Built target smartscolor make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 71%] Generating moleculelist.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python/moleculelist.moc_parameters cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/python /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= [ 71%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/atomindexcolor.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target python-module make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 72%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/animation.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/animation.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/animation.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /build/avogadro-1.2.0/libavogadro/src/python/animation.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 72%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfaceextension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 72%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/cmath:41, from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 72%] Linking CXX shared module ../../../lib/atomindexcolor.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/atomindexcolor.dir/link.txt --verbose=1 [ 72%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/abstract_ir.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.cpp /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/atomindexcolor.so CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.h:24, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.cpp:21: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 72%] Linking CXX shared module ../../../lib/chargecolor.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/chargecolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/chargecolor.so CMakeFiles/chargecolor.dir/chargecolor.cpp.o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 72%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o [ 72%] Built target atomindexcolor cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/bits/stl_algobase.h:59, from /usr/include/c++/8/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 72%] Generating avogadro_zh_TW.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/zh_TW.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_TW.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_TW.ts [ 72%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx Scanning directory '/build/avogadro-1.2.0/avogadro/src'... In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/distancecolor.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_TW.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_TW.qm [ 72%] Built target chargecolor [ 72%] Generating aboutdialog.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/aboutdialog.moc_parameters [ 72%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 72%] Generating addenginedialog.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/addenginedialog.moc_parameters [ 72%] Generating application.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/application.moc_parameters [ 72%] Generating detachedview.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/detachedview.moc_parameters [ 72%] Generating enginecolorswidget.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/enginecolorswidget.moc_parameters [ 72%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 72%] Generating engineitemdelegate.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/engineitemdelegate.moc_parameters [ 73%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx [ 73%] Generating engineitemmodel.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/engineitemmodel.moc_parameters In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/residuecolor.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 74%] Generating enginelistview.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/enginelistview.moc_parameters [ 74%] Generating engineprimitiveswidget.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/engineprimitiveswidget.moc_parameters [ 74%] Generating engineviewwidget.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/engineviewwidget.moc_parameters [ 74%] Generating flattabwidget.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/flattabwidget.moc_parameters [ 74%] Generating glgraphicsview.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/glgraphicsview.moc_parameters [ 74%] Generating importdialog.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/importdialog.moc_parameters [ 74%] Generating mainwindow.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/mainwindow.moc_parameters [ 74%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/qprocess.h:45, from /usr/include/qt4/QtCore/QProcess:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 74%] Generating pluginitemmodel.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/pluginitemmodel.moc_parameters [ 74%] Generating pluginlistview.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/pluginlistview.moc_parameters [ 75%] Generating pluginsettings.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/pluginsettings.moc_parameters [ 75%] Generating primitiveitemmodel.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/primitiveitemmodel.moc_parameters [ 75%] Generating primitivetreeview.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/primitivetreeview.moc_parameters [ 75%] Generating projecttreeeditor.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/projecttreeeditor.moc_parameters [ 75%] Linking CXX shared module ../../../lib/distancecolor.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/distancecolor.dir/link.txt --verbose=1 [ 75%] Generating projecttreemodel.moc /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/distancecolor.so CMakeFiles/distancecolor.dir/distancecolor.cpp.o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/projecttreemodel.moc_parameters [ 75%] Generating projecttreemodeldelegate.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/projecttreemodeldelegate.moc_parameters [ 75%] Generating savedialog.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/savedialog.moc_parameters [ 75%] Generating settingsdialog.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/settingsdialog.moc_parameters [ 75%] Generating atomdelegate.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/atomdelegate.moc_parameters make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 75%] Built target distancecolor [ 75%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/atom.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/atom.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/atom.cpp [ 75%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o [ 76%] Generating bonddelegate.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/bonddelegate.moc_parameters In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/atom.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Generating labeldelegate.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/labeldelegate.moc_parameters [ 76%] Generating moleculedelegate.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/moleculedelegate.moc_parameters [ 76%] Generating residuedelegate.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/residuedelegate.moc_parameters [ 76%] Generating selectiondelegate.moc cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/selectiondelegate.moc_parameters [ 76%] Generating ui_addenginedialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_addenginedialog.h /build/avogadro-1.2.0/avogadro/src/addenginedialog.ui [ 76%] Generating ui_enginecolorswidget.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_enginecolorswidget.h /build/avogadro-1.2.0/avogadro/src/enginecolorswidget.ui [ 76%] Generating ui_engineprimitiveswidget.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_engineprimitiveswidget.h /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.ui [ 76%] Linking CXX shared module ../../../lib/residuecolor.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/residuecolor.dir/link.txt --verbose=1 [ 76%] Generating ui_importdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_importdialog.h /build/avogadro-1.2.0/avogadro/src/importdialog.ui /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/residuecolor.so CMakeFiles/residuecolor.dir/residuecolor.cpp.o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 76%] Generating ui_mainwindow.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_mainwindow.h /build/avogadro-1.2.0/avogadro/src/mainwindow.ui [ 77%] Generating ui_pluginsettings.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_pluginsettings.h /build/avogadro-1.2.0/avogadro/src/pluginsettings.ui [ 77%] Generating ui_projecttreeeditor.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_projecttreeeditor.h /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.ui [ 77%] Generating ui_settingsdialog.h cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/uic -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_settingsdialog.h /build/avogadro-1.2.0/avogadro/src/settingsdialog.ui [ 77%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 77%] Generating qrc_avogadro.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/lib/x86_64-linux-gnu/qt4/bin/rcc -name avogadro -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/qrc_avogadro.cxx /build/avogadro-1.2.0/avogadro/src/avogadro.qrc [ 77%] Generating avogadro_af.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/af.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_af.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_af.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... [ 77%] Linking CXX shared module ../../../../lib/swcntbuilderextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/cmake -E cmake_link_script CMakeFiles/swcntbuilderextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/swcntbuilderextension.so CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU tubegen/libtubegen.a cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_af.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_af.qm [ 77%] Generating avogadro_ar.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ar.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ar.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ar.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 77%] Built target residuecolor cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ar.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ar.qm [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/iostream:38, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 77%] Generating avogadro_bg.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/bg.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_bg.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_bg.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_bg.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_bg.qm [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 77%] Generating avogadro_ca.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ca.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca.qm make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 77%] Built target swcntbuilderextension [ 77%] Generating avogadro_ca@valencia.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ca@valencia.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca@valencia.ts [ 77%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca@valencia.ts In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qalgorithms.h:45, from /usr/include/qt4/QtCore/qdebug.h:45, from /usr/include/qt4/QtCore/QDebug:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.h:30, from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca@valencia.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ca@valencia.qm [ 78%] Generating avogadro_cs.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/cs.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_cs.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_cs.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_cs.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_cs.qm [ 78%] Generating avogadro_da.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/da.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_da.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_da.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_da.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_da.qm [ 78%] Generating avogadro_de.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/de.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_de.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_de.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... [ 78%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_de.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_de.qm [ 78%] Generating avogadro_el.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/el.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_el.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_el.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_el.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_el.qm [ 78%] Generating avogadro_en_AU.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/en_AU.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_AU.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_AU.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_AU.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_AU.qm [ 78%] Generating avogadro_en_CA.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/en_CA.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_CA.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_CA.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_CA.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_CA.qm [ 78%] Generating avogadro_en_GB.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/en_GB.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_GB.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_GB.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_GB.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_en_GB.qm [ 78%] Generating avogadro_es.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/es.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_es.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_es.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... [ 78%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/bits/stl_algobase.h:59, from /usr/include/c++/8/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_es.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_es.qm [ 78%] Generating avogadro_et.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/et.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_et.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_et.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_et.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_et.qm [ 78%] Generating avogadro_eu.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/eu.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_eu.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_eu.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... [ 78%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/ir.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/ir.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_eu.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_eu.qm In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.h:24, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.cpp:21: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 79%] Generating avogadro_fi.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/fi.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fi.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fi.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fi.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fi.qm [ 79%] Generating avogadro_fr.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/fr.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr.qm [ 79%] Generating avogadro_fr_CA.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/fr_CA.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr_CA.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr_CA.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr_CA.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_fr_CA.qm [ 79%] Generating avogadro_gl.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/gl.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_gl.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_gl.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... [ 79%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.cpp [ 79%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, from /usr/include/qt4/QtGui/QStyledItemDelegate:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.h:22, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_gl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_gl.qm [ 79%] Generating avogadro_he.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/he.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_he.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_he.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_he.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_he.qm [ 79%] Generating avogadro_hi.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/hi.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hi.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hi.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... [ 79%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hi.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hi.qm [ 79%] Generating avogadro_hr.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/hr.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hr.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hr.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hr.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hr.qm [ 79%] Generating avogadro_hu.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/hu.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hu.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hu.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hu.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_hu.qm [ 79%] Generating avogadro_id.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/id.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_id.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_id.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_id.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_id.qm [ 80%] Generating avogadro_it.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/it.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_it.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_it.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_it.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_it.qm [ 80%] Generating avogadro_ja.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ja.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ja.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ja.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ja.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ja.qm [ 80%] Generating avogadro_kn.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/kn.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_kn.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_kn.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_kn.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_kn.qm [ 80%] Generating avogadro_ko.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ko.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ko.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ko.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ko.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ko.qm [ 80%] Generating avogadro_ms.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ms.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ms.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ms.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ms.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ms.qm [ 80%] Generating avogadro_nb.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/nb.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nb.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nb.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nb.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nb.qm [ 80%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp [ 80%] Generating avogadro_nl.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/nl.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nl.ts In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qalgorithms.h:45, from /usr/include/qt4/QtCore/qdebug.h:45, from /usr/include/qt4/QtCore/QDebug:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nl.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_nl.qm [ 80%] Generating avogadro_oc.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/oc.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_oc.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_oc.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_oc.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_oc.qm [ 80%] Generating avogadro_pl.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/pl.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pl.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pl.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pl.qm [ 81%] Generating avogadro_pt.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/pt.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... [ 81%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt.qm [ 81%] Generating avogadro_pt_BR.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/pt_BR.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt_BR.ts [ 81%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt_BR.ts In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning directory '/build/avogadro-1.2.0/avogadro/src'... [ 81%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/QtGlobal:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp: In member function 'void Avogadro::GamessControlGroup::WriteToFile(std::ostream&, Avogadro::GamessInputData*, long int)': /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:850:19: warning: '%s' directive writing up to 179 bytes into a region of size 174 [-Wformat-overflow=] sprintf( Out, "CITYP=%s ", textVal ); ^~~~~~~~~~~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 8 and 187 bytes into a destination of size 180 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt_BR.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_pt_BR.qm [ 81%] Generating avogadro_ru.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ru.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ru.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ru.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ru.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ru.qm [ 81%] Generating avogadro_sk.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sk.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sk.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sk.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sk.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sk.qm [ 81%] Generating avogadro_sl.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sl.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sl.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sl.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sl.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sl.qm [ 81%] Generating avogadro_sq.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sq.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sq.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sq.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sq.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sq.qm [ 81%] Generating avogadro_sr.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sr.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sr.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sr.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sr.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sr.qm [ 81%] Generating avogadro_sv.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sv.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sv.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sv.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sv.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_sv.qm [ 81%] Linking CXX shared module ../../../../lib/surfaceextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/surfaceextension.so CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../lib/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel [ 81%] Generating avogadro_ta.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ta.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ta.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ta.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ta.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ta.qm [ 82%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 82%] Generating avogadro_te.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/te.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_te.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_te.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... [ 82%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:25, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_te.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_te.qm [ 83%] Generating avogadro_th.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/th.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_th.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_th.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_th.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_th.qm [ 83%] Generating avogadro_tr.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/tr.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_tr.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_tr.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_tr.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_tr.qm [ 83%] Generating avogadro_ug.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ug.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ug.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ug.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 83%] Built target surfaceextension cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ug.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_ug.qm [ 83%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 83%] Generating avogadro_uk.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/uk.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_uk.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_uk.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... [ 83%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/bond.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/bond.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/bond.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/bond.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_uk.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_uk.qm [ 84%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx [ 84%] Generating avogadro_vi.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/vi.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_vi.ts In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_vi.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_vi.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_vi.qm [ 84%] Generating avogadro_zh_CN.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/zh_CN.po -o /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_CN.ts cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_CN.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... [ 84%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/camera.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/camera.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/camera.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/camera.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_CN.ts -qm /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/avogadro_zh_CN.qm cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/avogadro/src /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake --color= [ 85%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/nmr.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/nmr.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target avogadro-app make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 85%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/aboutdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/avogadro/src/aboutdialog.h:23, from /build/avogadro-1.2.0/avogadro/src/aboutdialog.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 85%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 85%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalwidget.h:22, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 85%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/qprocess.h:45, from /usr/include/qt4/QtCore/QProcess:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 85%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 85%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp [ 85%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 85%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/addenginedialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_addenginedialog.h:12, from /build/avogadro-1.2.0/avogadro/src/addenginedialog.h:28, from /build/avogadro-1.2.0/avogadro/src/addenginedialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 85%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 85%] Linking CXX shared module ../../../lib/forcefieldextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/forcefieldextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/forcefieldextension.so CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 85%] Built target forcefieldextension [ 85%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaspectra.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.cpp:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 85%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 85%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, from /usr/include/qt4/QtGui/QStyledItemDelegate:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/htmldelegate.h:22, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 85%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 85%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/dos.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/dos.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/dos.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/dos.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 86%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qalgorithms.h:45, from /usr/include/qt4/QtCore/qdebug.h:45, from /usr/include/qt4/QtCore/QDebug:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.h:30, from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp:48: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 86%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/uv.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/uv.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 87%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/application.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/application.cpp.o -c /build/avogadro-1.2.0/avogadro/src/application.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qcoreapplication.h:45, from /usr/include/qt4/QtGui/qapplication.h:45, from /usr/include/qt4/QtGui/QApplication:1, from /build/avogadro-1.2.0/avogadro/src/application.h:25, from /build/avogadro-1.2.0/avogadro/src/application.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 87%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 87%] Linking CXX shared module ../../../../lib/orbitalextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/orbitalextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/orbitalextension.so CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../lib/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel [ 87%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessextension.h:26, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 87%] Built target orbitalextension [ 87%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/cd.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/cd.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx [ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/detachedview.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/detachedview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/detachedview.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /build/avogadro-1.2.0/avogadro/src/detachedview.h:28, from /build/avogadro-1.2.0/avogadro/src/detachedview.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/color.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/color.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/color.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/color.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/cube.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/cube.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/cube.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/cube.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcadata.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcadata.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/raman.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/raman.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/raman.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/raman.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qalgorithms.h:45, from /usr/include/qt4/QtCore/qdebug.h:45, from /usr/include/qt4/QtCore/QDebug:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp:39: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectraextension.h:25, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx [ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/editcommands.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/editcommands.cpp.o -c /build/avogadro-1.2.0/avogadro/src/editcommands.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /build/avogadro-1.2.0/avogadro/src/editcommands.h:28, from /build/avogadro-1.2.0/avogadro/src/editcommands.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectratype.h:24, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaextension.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Linking CXX shared module ../../../../lib/gamessextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/gamessextension.so CMakeFiles/gamessextension.dir/inputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessextension.cpp.o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 88%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/enginecolorswidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_enginecolorswidget.h:12, from /build/avogadro-1.2.0/avogadro/src/enginecolorswidget.h:28, from /build/avogadro-1.2.0/avogadro/src/enginecolorswidget.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim/../../../../../libavogadro/src/extensions/qtaim/qtaimextension.h:25, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 88%] Built target gamessextension [ 88%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineitemdelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, from /usr/include/qt4/QtGui/QStyledItemDelegate:1, from /build/avogadro-1.2.0/avogadro/src/engineitemdelegate.h:28, from /build/avogadro-1.2.0/avogadro/src/engineitemdelegate.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 88%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_ir.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_ir.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/ir.h:23, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 89%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcainputdialog.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 89%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 89%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 90%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_nmr.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/nmr.h:23, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 90%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/eigen.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/eigen.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/eigen.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /build/avogadro-1.2.0/libavogadro/src/python/eigen.cpp:4: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1822, from /usr/include/python2.7/numpy/ndarrayobject.h:12, from /usr/include/python2.7/numpy/arrayobject.h:4, from /build/avogadro-1.2.0/libavogadro/src/python/eigen.cpp:5: /usr/include/python2.7/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ [ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o [ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginelistview.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineitemmodel.cpp cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/enginelistview.cpp [ 90%] Linking CXX shared module ../../../../lib/qtaimextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimextension.dir/link.txt --verbose=1 In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, from /usr/include/qt4/QtCore/QModelIndex:1, from /build/avogadro-1.2.0/avogadro/src/engineitemmodel.h:29, from /build/avogadro-1.2.0/avogadro/src/engineitemmodel.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qframe.h:45, from /usr/include/qt4/QtGui/qabstractscrollarea.h:45, from /usr/include/qt4/QtGui/qabstractitemview.h:45, from /usr/include/qt4/QtGui/qlistview.h:45, from /usr/include/qt4/QtGui/QListView:1, from /build/avogadro-1.2.0/avogadro/src/enginelistview.h:25, from /build/avogadro-1.2.0/avogadro/src/enginelistview.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/qtaimextension.so CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_engineprimitiveswidget.h:12, from /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.h:27, from /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 90%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_dos.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_dos.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/dos.h:25, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 90%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 90%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaanalysedialog.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 90%] Built target qtaimextension [ 90%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_uv.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_uv.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/uv.h:25, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 90%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 90%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_cd.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_cd.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/cd.h:25, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 90%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaspectra.h:26, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 90%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/elementtranslator.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/elementtranslator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/elementtranslator.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/elementtranslator.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineviewwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /build/avogadro-1.2.0/avogadro/src/engineviewwidget.h:28, from /build/avogadro-1.2.0/avogadro/src/engineviewwidget.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/flattabwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /build/avogadro-1.2.0/avogadro/src/flattabwidget.h:26, from /build/avogadro-1.2.0/avogadro/src/flattabwidget.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_raman.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/raman.h:24, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/glgraphicsview.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qmetatype.h:45, from /usr/include/qt4/QtGui/qgraphicsview.h:45, from /usr/include/qt4/QtGui/QGraphicsView:1, from /build/avogadro-1.2.0/avogadro/src/glgraphicsview.h:28, from /build/avogadro-1.2.0/avogadro/src/glgraphicsview.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/engine.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/engine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/engine.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/engine.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 92%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 92%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystallographyextension.h:23, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/importdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/importdialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/importdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_importdialog.h:12, from /build/avogadro-1.2.0/avogadro/src/importdialog.h:28, from /build/avogadro-1.2.0/avogadro/src/importdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/main.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/main.cpp.o -c /build/avogadro-1.2.0/avogadro/src/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/avogadro/src/main.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/extension.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/extension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/extension.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/extension.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/mainwindow.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o -c /build/avogadro-1.2.0/avogadro/src/mainwindow.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /build/avogadro-1.2.0/avogadro/src/mainwindow.cpp:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/pluginitemmodel.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, from /build/avogadro-1.2.0/avogadro/src/pluginitemmodel.h:29, from /build/avogadro-1.2.0/avogadro/src/pluginitemmodel.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputfileextension.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Linking CXX shared module ../../../../lib/spectraextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/spectraextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/spectraextension.so CMakeFiles/spectraextension.dir/spectraextension.cpp.o CMakeFiles/spectraextension.dir/spectradialog.cpp.o CMakeFiles/spectraextension.dir/spectratype.cpp.o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o CMakeFiles/spectraextension.dir/ir.cpp.o CMakeFiles/spectraextension.dir/nmr.cpp.o CMakeFiles/spectraextension.dir/dos.cpp.o CMakeFiles/spectraextension.dir/uv.cpp.o CMakeFiles/spectraextension.dir/cd.cpp.o CMakeFiles/spectraextension.dir/raman.cpp.o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o CMakeFiles/spectraextension.dir/moc_ir.cxx.o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o CMakeFiles/spectraextension.dir/moc_dos.cxx.o CMakeFiles/spectraextension.dir/moc_uv.cxx.o CMakeFiles/spectraextension.dir/moc_cd.cxx.o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 93%] Linking CXX shared module ../../../../lib/orcaextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/orcaextension.so CMakeFiles/orcaextension.dir/orcaextension.cpp.o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o CMakeFiles/orcaextension.dir/orcadata.cpp.o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/pluginlistview.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, from /build/avogadro-1.2.0/avogadro/src/pluginlistview.h:27, from /build/avogadro-1.2.0/avogadro/src/pluginlistview.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 93%] Built target spectraextension [ 93%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 93%] Built target orcaextension [ 93%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/fragment.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/fragment.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/fragment.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/fragment.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o -c /build/avogadro-1.2.0/avogadro/src/pluginsettings.cpp [ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/primitiveitemmodel.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, from /build/avogadro-1.2.0/avogadro/src/pluginlistview.h:27, from /build/avogadro-1.2.0/avogadro/src/pluginsettings.h:25, from /build/avogadro-1.2.0/avogadro/src/pluginsettings.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, from /usr/include/qt4/QtCore/QAbstractItemModel:1, from /build/avogadro-1.2.0/avogadro/src/primitiveitemmodel.h:28, from /build/avogadro-1.2.0/avogadro/src/primitiveitemmodel.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx [ 93%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/primitivetreeview.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qframe.h:45, from /usr/include/qt4/QtGui/qabstractscrollarea.h:45, from /usr/include/qt4/QtGui/qabstractitemview.h:45, from /usr/include/qt4/QtGui/qtreeview.h:45, from /usr/include/qt4/QtGui/QTreeView:1, from /build/avogadro-1.2.0/avogadro/src/primitivetreeview.h:25, from /build/avogadro-1.2.0/avogadro/src/primitivetreeview.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx [ 93%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/glwidget.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/glwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.h:47, from /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/qprocess.h:45, from /usr/include/qt4/QtCore/QProcess:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/abinitinputdialog.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx [ 94%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:23, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 95%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreeitem.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/avogadro/src/projecttreeitem.h:28, from /build/avogadro-1.2.0/avogadro/src/projecttreeitem.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/main.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/main.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/main.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/python2.7/Python.h:19, from /build/avogadro-1.2.0/libavogadro/src/python/main.cpp:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreemodel.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/avogadro/src/projecttreemodel.h:28, from /build/avogadro-1.2.0/avogadro/src/projecttreemodel.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/mesh.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/mesh.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/mesh.cpp [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/mesh.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.h:25, from /build/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/meshgenerator.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/meshgenerator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/meshgenerator.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/meshgenerator.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/molecule.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/molecule.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/savedialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/savedialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/savedialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/qdir.h:45, from /usr/include/qt4/QtGui/qfiledialog.h:45, from /usr/include/qt4/QtGui/QFileDialog:1, from /build/avogadro-1.2.0/avogadro/src/savedialog.h:25, from /build/avogadro-1.2.0/avogadro/src/savedialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculefile.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/moleculefile.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/moleculefile.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/moleculefile.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Linking CXX shared module ../../../../lib/crystallographyextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystallographyextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/crystallographyextension.so CMakeFiles/crystallographyextension.dir/avospglib.cpp.o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -lsymspg [ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/qprocess.h:45, from /usr/include/qt4/QtCore/QProcess:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/settingsdialog.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/ui_settingsdialog.h:12, from /build/avogadro-1.2.0/avogadro/src/settingsdialog.h:28, from /build/avogadro-1.2.0/avogadro/src/settingsdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.h:25, from /build/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculelist.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/moleculelist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/moleculelist.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/python2.7/Python.h:19, from /build/avogadro-1.2.0/libavogadro/src/python/moleculelist.cpp:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.h:25, from /build/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o [ 96%] Built target crystallographyextension cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp: In function 'void export_GLWidget()': /build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:53:55: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] class_ >("GLWidget") ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/detail/prologue.hpp:17, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:2: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.h:25, from /build/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/navigate.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/navigate.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/navigate.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/navigate.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.h:25, from /build/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp: In function 'void export_Molecule()': /build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:88:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr >("Molecule", no_init) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/detail/prologue.hpp:17, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:2: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.cpp [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.cpp In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.h:25, from /build/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.h:25, from /build/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/qrc_avogadro.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/qrc_avogadro.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/neighborlist.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/neighborlist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/neighborlist.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/neighborlist.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx In file included from /usr/include/x86_64-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/x86_64-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, from /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/painter.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/painter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/painter.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/painter.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/painterdevice.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/painterdevice.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/painterdevice.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/painterdevice.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/periodictableview.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/periodictableview.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/periodictableview.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/periodictableview.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/plugin.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/plugin.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/plugin.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/plugin.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/pluginmanager.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/pluginmanager.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/pluginmanager.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/pluginmanager.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/primitive.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/primitive.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/primitive.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/primitive.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/primitivelist.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/primitivelist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/primitivelist.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/primitivelist.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Linking CXX shared module ../../../../lib/inputfileextension.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/inputfileextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/inputfileextension.so CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 99%] Built target inputfileextension [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/qlist.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/qlist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/qlist.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/qlist.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/qstring.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/qstring.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/qstring.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/python2.7/Python.h:19, from /build/avogadro-1.2.0/libavogadro/src/python/qstring.cpp:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/residue.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/residue.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/residue.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/residue.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/sip.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/sip.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/sip.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/sip.cpp:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/std_vector.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/std_vector.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/std_vector.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/std_vector.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/swig.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/swig.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/swig.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/swig.cpp:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/tool.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/tool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/tool.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /build/avogadro-1.2.0/libavogadro/src/python/tool.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/toolgroup.cpp.o cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/toolgroup.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/toolgroup.cpp In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/python2.7/Python.h:19, from /build/avogadro-1.2.0/libavogadro/src/python/toolgroup.cpp:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Linking CXX executable ../../bin/avogadro cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro-app.dir/link.txt --verbose=1 /usr/bin/c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -rdynamic CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o CMakeFiles/avogadro-app.dir/application.cpp.o CMakeFiles/avogadro-app.dir/detachedview.cpp.o CMakeFiles/avogadro-app.dir/editcommands.cpp.o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o CMakeFiles/avogadro-app.dir/importdialog.cpp.o CMakeFiles/avogadro-app.dir/main.cpp.o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o CMakeFiles/avogadro-app.dir/savedialog.cpp.o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -o ../../bin/avogadro -Wl,-rpath,/build/avogadro-1.2.0/obj-x86_64-linux-gnu/lib: -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lopenbabel ../../lib/libavogadro.so.1.2.0 -lX11 -lboost_python -lX11 -lboost_python make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [100%] Built target avogadro-app [100%] Linking CXX shared module ../../../lib/Avogadro.so cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/python-module.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC 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CMakeFiles/python-module.dir/mesh.cpp.o CMakeFiles/python-module.dir/meshgenerator.cpp.o CMakeFiles/python-module.dir/molecule.cpp.o CMakeFiles/python-module.dir/moleculefile.cpp.o CMakeFiles/python-module.dir/moleculelist.cpp.o CMakeFiles/python-module.dir/navigate.cpp.o CMakeFiles/python-module.dir/neighborlist.cpp.o CMakeFiles/python-module.dir/painter.cpp.o CMakeFiles/python-module.dir/painterdevice.cpp.o CMakeFiles/python-module.dir/periodictableview.cpp.o CMakeFiles/python-module.dir/plugin.cpp.o CMakeFiles/python-module.dir/pluginmanager.cpp.o CMakeFiles/python-module.dir/primitive.cpp.o CMakeFiles/python-module.dir/primitivelist.cpp.o CMakeFiles/python-module.dir/qlist.cpp.o CMakeFiles/python-module.dir/qstring.cpp.o CMakeFiles/python-module.dir/residue.cpp.o CMakeFiles/python-module.dir/sip.cpp.o CMakeFiles/python-module.dir/std_vector.cpp.o CMakeFiles/python-module.dir/swig.cpp.o CMakeFiles/python-module.dir/tool.cpp.o CMakeFiles/python-module.dir/toolgroup.cpp.o 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cmake_progress_start /build/avogadro-1.2.0/obj-x86_64-linux-gnu/CMakeFiles /build/avogadro-1.2.0/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/depend make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/depend make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/depend make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build [ 1%] Built target tubegen [ 2%] Built target msym make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/elementcolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build [ 2%] Built target elementcolor make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/navigatetool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 3%] Built target bsdyengine [ 4%] Built target navigatetool make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 6%] Built target OpenQube make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/openqube 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libavogadro/src/engines/CMakeFiles/hbondengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/forceengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/ringengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/forceengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/polygonengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 25%] Built target forceengine make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend [ 25%] Built target polygonengine make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= [ 26%] Built target simplewireengine make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 27%] Built target dipoleengine make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/sphereengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 28%] Built target surfaceengine make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/hbondengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= [ 29%] Built target sphereengine make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= [ 30%] Built target hbondengine make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/axesengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color= [ 30%] Built target axesengine make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/ringengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 30%] Built target ribbonengine make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/stickengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 31%] Built target ringengine make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend [ 32%] Built target qtaimengine make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/wireengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 32%] Built target stickengine make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --color= [ 33%] Built target wireengine make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/labelengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= [ 33%] Built target cartoonengine make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend [ 33%] Built target labelengine make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build [ 33%] Built target autorotatetool make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= [ 33%] Built target clickmeasuretool make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 34%] Built target gl2psextension make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend [ 35%] Built target selectrotatetool make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 36%] Built target bondcentrictool make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= [ 36%] Built target h2methylextension make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/autoopttool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/aligntool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 36%] Built target shaderextension make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= [ 37%] Built target autoopttool make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend [ 37%] Built target aligntool make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/drawtool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 38%] Built target supercellextension make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 39%] Built target drawtool make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend [ 40%] Built target manipulatetool make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= [ 41%] Built target fileimportextension make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build [ 42%] Built target molecularpropextension make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/propextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build [ 43%] Built target propextension make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 44%] Built target invertchiralextension make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 45%] Built target pythonterminal make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend [ 46%] Built target cartesianextension make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/selectextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= [ 46%] Built target hydrogensextension make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend [ 46%] Built target selectextension make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 47%] Built target networkfetchextension make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend [ 47%] Built target insertpeptideextension make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= [ 49%] Built target forcefieldextension make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 49%] Built target insertdnaextension make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/orca /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 50%] Built target symmetryextension make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake --color= [ 51%] Built target povrayextension make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= [ 53%] Built target insertfragmentextension make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color= make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/animationextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 54%] Built target vrmlextension make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake --color= [ 56%] Built target animationextension make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build [ 61%] Built target crystallographyextension make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend [ 62%] Built target vibrationextension make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/python /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python /build/avogadro-1.2.0/obj-x86_64-linux-gnu/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/chargecolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/customcolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 63%] Built target chargecolor make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend [ 67%] Built target spectraextension make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 67%] Built target customcolor make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/smartscolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 67%] Built target atomindexcolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 68%] Built target swcntbuilderextension make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build [ 68%] Built target smartscolor make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 70%] Built target orbitalextension make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 71%] Built target surfaceextension make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/residuecolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build [ 72%] Built target qtaimextension make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' cd /build/avogadro-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/avogadro/src /build/avogadro-1.2.0/obj-x86_64-linux-gnu /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src /build/avogadro-1.2.0/obj-x86_64-linux-gnu/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake --color= [ 74%] Built target gamessextension [ 75%] Built target residuecolor make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/distancecolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 81%] Built target inputfileextension make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build [ 81%] Built target distancecolor [ 83%] Built target orcaextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/python/CMakeFiles/python-module.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [ 87%] Built target python-module make[3]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/src/CMakeFiles/avogadro-app.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' [100%] Built target avogadro-app make[2]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/avogadro-1.2.0/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/AvogadroConfig.cmake -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/AvogadroConfigVersion.cmake -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/AvogadroUse.cmake -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/cmake/FindEigen2.cmake -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/cmake/FindEigen3.cmake -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/cmake/FindGLEW.cmake -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/water.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/proprane-2-thiol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/proprane-1-thiol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/pentane-1-thiol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/octane-1-thiol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/methanethiol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/hexane-1-thiol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/heptane-1-thiol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/ethanethiol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/ethane-1_2-dithiol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/butane-1-thiol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/R_butane-2-thiol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/2-methylproprane-2-thiol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/sulfoxides -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/sulfoxides/dimethyl_sulfoxide.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/steroids -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/steroids/testosterone.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/steroids/estradiol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/steroids/cholesterol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/uracil.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/thymine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/guanine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/cytosine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/adenine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/propionitrile.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/isobutyronitrile.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/butyronitrile.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/acetonitrile.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/1_1_1-trichloroacetonitrile.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/macrocycles -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/macrocycles/porphin.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/macrocycles/phthalocyanine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ligands -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ligands/Cp-cyclopentadienyl.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/p-benzoquinone.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/methyl_vinyl_ketone.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/cyclohexanone.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/butanone.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/acetone.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/thiophene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/pyridine.cml -- 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Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_3-thiazole.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_3-oxazole.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_2-thiazole.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_2-oxazole.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1H-pyrrole.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1H-pyrazole.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1H-indole.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/PCBM.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/PC70BM.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C80.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C78.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C76.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C70.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C60-buckminsterfullerene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C50.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C36.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C32.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C30.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C28.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C26.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C240.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C24.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C20.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C180.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/stearic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/pentanoic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/palmitic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/oleic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/octanoic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/myristic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/linolenic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/linoleic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/lauric_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/hexanoic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/decanoic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/cervonic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/arachidonic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/tetrahydropyran.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/tetrahydrofuran.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/ethylmethylether.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/dipropylether.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/dimethylether.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/diisopropylether.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/diethylether.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/dibutylether.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/di-tert-butylether.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/1_4-dioxane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-xylopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-ribopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-lyxopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-arabinopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-xylopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-talopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-tagatopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-ribopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-rhamnopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-mannopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-lyxopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-idopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-gulopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-glucopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-galactopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-fucopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-fructopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-arabinopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-allopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-xylopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-sorbopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-ribopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-rhamnopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-lyxopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-galactopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-fucopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-arabinopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-xylopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-talopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-tagatopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-ribopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-rhamnopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-psicopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-mannopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-lyxopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-idopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-gulopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-glucuronopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-glucopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-galacturonopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-galactopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-fucopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-arabinopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-allopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclopentene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclopenta-1_3-diene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3_5_7-tetraene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3_5-triene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3-diene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohexene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohexa-1_4-diene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohexa-1_3-diene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_4-diene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_3_5-triene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_3-diene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/Z-cyclooctene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/Z-cycloheptene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/trans-decahydronaphthalene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/norbornane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclopropane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclopentane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclooctane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclononane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane-twist-boat.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane-chair.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cycloheptane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclodecane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclobutane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cubane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cis-decahydronaphthalene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/adamantane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/abietic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/1R-camphor.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/1R-camphene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/6-octahedral.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/5-trigonal-bipyramidal.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/5-square-pyramidal.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/4-tetrahedral.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/4-planar.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/3-trigonal-pyramidal.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/3-trigonal-planar.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/propanoic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/oxalic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/isobutyric_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/formic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/citric_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/butanoic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/acetic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-tartaric_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-malic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-lactic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-ascorbic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/E-butenedioic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/E-butanoic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/D-tartaric_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/D-malic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/D-lactic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/2_2_2-trifluoroacetic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/2_2_2-trichloroacetic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/2_2-dichloroacetic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/dihydroxyacetone.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-xylulose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-xylose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-threose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-talose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-tagatose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-sorbose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-ribulose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-ribose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-psicose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-mannose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-lyxose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-idose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-gulose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-glyceraldehyde.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-glucose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-galactose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-fructose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-erythrulose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-erythrose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-arabinose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-altrose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-allose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbamides -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbamides/urea.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/uric_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/toluene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/tetralin.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/quinoline.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/quinazoline.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/phthalimide.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/phenol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/phenanthrene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/nitrobenzene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/naphthalene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/isoquinoline.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/coumarin.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/cinnoline.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/chromone.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/caffeine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzoyl_chloride.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzothiophene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzoic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzofuran.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzaldehyde.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/anthracene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/anisole.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/aniline.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/acridine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthylene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthenequinone.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/9H-xanthene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/9H-fluorene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/9H-carbazole.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/7H-purine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/4H-chromene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/2H-chromene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/1_8-naphthyridine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/1_10-phenanthroline.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/1H-indole.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/1H-indene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/glycine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-valine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-tyrosine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-tryptophan.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-threonine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-serine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-proline.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-phenylalanine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-methionine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-lysine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-leucine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-isoleucine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-histidine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-glutamine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-glutamic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-cysteine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-aspartic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-asparagine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-arginine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-allo-isoleucine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-alanine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-4-nitrophenylalanine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-valine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-tyrosine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-tryptophan.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-threonine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-serine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-proline.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-phenylalanine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-methionine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-lysine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-leucine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-isoleucine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-histidine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-glutamine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-glutamic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-cysteine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-aspartic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-asparagine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-arginine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-allo-threonine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-alanine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/trimethylamine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/triethylenediamine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/triethylamine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/tert-butylamine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/pyrrolidine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/piperidine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/piperazine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/methylamine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/ethylamine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/dimethylamine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/diethylamine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/azepane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/ammonia.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/S-sec-butylamine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/2-aminopropane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/1H-azepine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/oxamide.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/ethyl_carbamate.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/acetamide.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/N_N-dimethylformamide.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/N_N-dimethylacetamide.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkynes -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkynes/propyne.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkynes/acetylene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/propene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/pent-1-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/oct-1-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/hex-1-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/hept-1-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/ethene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/but-1-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-pent-2-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-4-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-3-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-2-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hex-3-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hex-2-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hept-3-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hept-2-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-but-2-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-pent-2-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-oct-4-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-oct-3-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-oct-2-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hex-3-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hex-2-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hept-3-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hept-2-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-but-2-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/3Z_3-ethylhepta-1_3-diene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/3Z-penta-1_3-diene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/3E-penta-1_3-diene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/2-methylbuta-1_3-diene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/2-methylbut-2-ene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/undecane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/tridecane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/tetradecane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/tetracosane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/propane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/pentane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/pentadecane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/octane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/nonane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/methane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/hexane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/hexadecane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/heptane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/ethane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/eicosane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/dodecane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/decane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/butane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/2-methylpropane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aldehydes -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aldehydes/formaldehyde.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aldehydes/acetaldehyde.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/propane-1_2_3-triol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/propan-2-ol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/propan-1-ol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/methanol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/ethanol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/ethane-1_2-diol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/cyclopentanol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/cyclohexanol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/but-2-yne-1_4-diol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/2-aminoethanol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-val.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-tyr.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-trp.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-thr.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-ser.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-sec.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-pyl.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-pro.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-phe.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-met.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-lys.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-leu.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-ile.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-his.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-glu.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-gln.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-cys.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-asp.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-asn.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-arg.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-ala.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/gly.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-val.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-tyr.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-trp.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-thr.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-ser.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-pro.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-phe.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-met.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-lys.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-leu.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-ile.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-his.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-glu.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-gln.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-cys.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-asp.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-asn.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-arg.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-ala.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ZSM-5.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ZON.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/YUG.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/WEN.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/WEI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/VSV.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/VNI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/VFI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/VET.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UWY.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UTL.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/USI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UOZ.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UOS.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UFI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UEI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TUN.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TSC.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TON.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TOL.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/THO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TER.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SZR.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SVR.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STW.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STT.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STF.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SSY.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SSF.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SOS.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SOF.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SOD.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SIV.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SGT.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFS.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFN.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFH.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFG.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFF.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFE.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SBT.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SBS.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SBN.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SBE.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAV.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAT.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAS.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAF.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RWY.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RWR.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RUT.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RTH.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RTE.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RSN.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RRO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RON.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RHO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PUN.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PON.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PHI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PAU.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PAR.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OWE.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OSO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OSI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OFF.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OBW.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NSI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NPO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NON.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NES.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NAT.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NAB.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MWW.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MVY.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MTW.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MTT.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MTN.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MTF.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MSO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MSE.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MRE.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MOZ.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MOR.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MON.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MFS.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MFI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MER.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MEP.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MEL.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MEI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MAZ.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MAR.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LTN.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LTL.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LTF.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LTA.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LOV.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LOS.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LIT.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LIO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LEV.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LAU.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/KFI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/JRY.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/JBW.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IWW.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IWV.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IWS.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IWR.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITW.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITV.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITR.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITH.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITE.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ISV.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IRR.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IMF.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IHW.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IFR.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/HEU.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GOO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GON.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GME.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GIU.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GIS.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/FRA.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/FER.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/FAU.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/FAR.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EZT.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EUO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ETR.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ESV.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ERI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EPI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EON.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EMT.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EDI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EAB.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DON.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DOH.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DFT.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DFO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DDR.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DAC.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CZP.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CON.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CLO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CHI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CHA.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CGS.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CGF.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CFI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CDO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CAS.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CAN.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BSV.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BRE.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BPH.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BOG.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BOF.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BIK.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BEC.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BEA.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BCT.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AWW.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AWO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATV.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATT.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATS.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATN.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ASV.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AST.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/APD.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/APC.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ANA.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AHT.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFY.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFX.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFT.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFS.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFR.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFN.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFG.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AET.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AEN.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AEL.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AEI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ACO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ABW.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/SrTiO3-Tausonite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/MgTiO3.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/Mg2TiO4-Qandilite-tetrag.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/Mg2TiO4-Qandilite-cubic.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/CaTiO3-Perovskite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/BaTiO3.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/ZnTe.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/PbTe-Altaite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/CdTe.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/BiTe.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/Bi2Te3.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Zincblende.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Wurtzite-2H.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Sphalerite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/SnS-Herzenbergite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/Sb2S3-Stibnite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/PbS-Galena.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/HgS-Metacinnabar.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/FeS2-Pyrite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/FeS.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/CdS-Hawleyite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/CdS-Greenockite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/Bi2S3-Bismuthinite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/SrSO4-Celestine.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/PbSO4-Anglesite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/MgSO4.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/CuSO4.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/CoSO4.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/CaSO4-Anhydrite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/CaSO4-2(H2O)-Gypsum.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/BaSO4-Barite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/silicates -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/silicates/Be3Al2(SiO3)6-Beryl.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/ZnSe.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/Sb2Se3-Antimonselite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/PbSe-Clausthalite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/HgSe-Tiemannite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/CdSe-Cadmoselite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/BiSe.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/Bi2Se3.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/phosphides -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/phosphides/InP.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/phosphides/GaP.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/phosphides/BP.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/phosphides/AlP.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/ZrO2-Cubic.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/ZrO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/ZnO-Zincite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/YbO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Y2O3.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/WO2.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/VO2.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/VO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/V2O5-Shcherbinaite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/V2O3-Karelianite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/UO2-Uraninite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/UO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Rutile.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Brookite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Anatase.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/TaO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SrO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SnO2-Cassiterite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SnO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SmO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Stishovite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Quartz-beta.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Quartz-alpha.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Cristobalite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Coesite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Sc2O3.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/RuO2.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Rh2O3.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Rb2O.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/PtO2-beta.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/PdO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/PbO2-Scrutinyite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/PbO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/NiO-Bunsenite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/NiFe2O4.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/NbO2.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/NbO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Na2O.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MoO3-Molybdite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MoO2-Tugarinovite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MnO2-Pyrolusite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MnO-Manganosite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MgO-Periclase.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Li2O.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/La2O3-LanthanumOxide-A.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/K2O.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/IrO2.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/In2O3.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/In2O3-IndiumOxide.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/HfO2.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2-Argutite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2-Argutite-tetrag.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/FeO-Wustite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Fe3O4-Magnetite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Fe2O3-Hematite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CuO-Tenorite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Cu2O-Cuprite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Cr2O3-Eskolaite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CoO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CoFe2O4.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CeO2-Cerianite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CdO-Monteponite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CaO-Lime.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/BaO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Al2O3-Corundum.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/AgO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Ag2O.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/(MgAl2)O4-Spinel.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/YBa2Cu3O6.9-YBCO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-rhomb.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-cub.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/LiNbO3-LithiumNiobate.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/LaAlO3.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/H3N-Ammonia.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/FeMnO3-Bixbyite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/CaC2O6.375H6-Oxalate-Weddellite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/Ca2C4O10H2.57-Oxalate-Whewellite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/C10H10Fe-Ferrocene.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/(NH4)MgPO4-6(H2O)-Struvite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/Si3N4-beta.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/InN.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/GaN.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/BN.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/AlN.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/PtBi.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/FePt-Tetraferroplatinum.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/Cu2MnAl-Heusler.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/CoFe-Wairauite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/BiPd-Sobolevskite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/AuCu-Tetraauricupride.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/Au3Cu-Bogdanovite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/(Ni0.5Fe0.5)Pt-Ferronickelplatinum.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/(Cu0.5Fe0.5)Pt-Tulameenite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-VII.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-VI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-Ih.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-IV.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-III.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-II.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/Ni(OH)2-Theophrastite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/Mg(OH)2-Brucite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/LiOH.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/KOH.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/Ca(OH)2-Portlandite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides/PdH.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides/NaH.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides/LiH.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides/KH.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/PbFCl-Matlockite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/NaCl-Halite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/KCl-Sylvite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/KBr.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/HgCl-Calomel.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/FeCl3-Molysite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CsCl.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CrCl3.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CrCl2.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CdI2.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CdCl2.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CaF2-Fluorite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/AlNa3F6-Cryolite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/AlCl3.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/AgCl-Chlorargyrite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/AgBr-Bromargyrite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Zr-Zirconium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Zn-Zinc.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Yb-Ytterbium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Y-Yttrium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Xe-Xenon.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/W-Tungsten.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/V-Vanadium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/U-Uranium-gamma.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/U-Uranium-alpha.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Tm-Thulium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Tl-Thallium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ti-Titanium-beta.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ti-Titanium-alpha.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Th-Thorium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Te-Tellurium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Tb-Terbium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ta-Tantalum.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sr-Strontium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sn-Tin-beta.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sn-Tin-alpha.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sm-Samarium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Si-Silicon.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Se-Selenium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sc-Scandium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sb-Antimony.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/S8-Sulfur-gamma.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/S8-Sulfur-beta.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/S8-Sulfur-alpha.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/S6-Sulfur.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ru-Ruthenium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Rh-Rhodium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Re-Rhenium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Rb-Rubidium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pu-Plutonium-gamma.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pu-Plutonium-epsilon.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pu-Plutonium-alpha.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pt-Platinum.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pr-Praseodymium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pd-Palladium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pb-Lead.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/P-Phosphorus.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/P-Phosphorus-black.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Os-Osmium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Np-Neptunium-gamma.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Np-Neptunium-beta.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Np-Neptunium-alpha.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ni-Nickel.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ne-Neon.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Nd-Neodymium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Nb-Niobium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Na-Sodium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/N-Nitrogen.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mo-Molybdenum.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-gamma.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-delta.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-alpha.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mg-Magnesium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Lu-Lutetium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Li-Lithium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/La-Lanthanum.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Kr-Krypton.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/K-Potassium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ir-Iridium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/In-Indium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/I-Iodine.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ho-Holmium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Hf-Hafnium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/He-Helium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ge-Germanium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Gd-Gadolinium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ga-Gallium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-gamma.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-delta.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-beta.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-alpha.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Eu-Europium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Er-Erbium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Dy-Dysprosium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cu-Copper.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cs-Cesium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cr-Chromium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Co-Cobalt.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cl-Chlorine.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ce-Cerium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cd-Cadmium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-gamma.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-beta.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-alpha.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/C-Lonsdaleite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/C-Graphite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/C-Diamond.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Br-Bromine.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Bi-Bismuth.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Be-Beryllium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ba-Barium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/B-Boron.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Au-Gold.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/As-Arsenolamprite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/As-Arsenic.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ar-Argon.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Am-Americium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Al-Aluminum.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ag-Silver.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ac-Actinium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Zn2SiO5H2-Hemimorphite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Mn1.854Fe1.656Mg0.537Si0.953O9H4-Guidottiite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Mg4Si6O22.82H13.64-Sepiolite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Mg3(O12Si4)H2-Vermiculite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Mg2Al2SiO9H4-Amesite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Lepidolite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/FeSi2O6H-Nontronite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Fe2.25Cl0.5H2.75-Fougerite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/AlSi2O6H-Pyrophyllite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al4KSi2O12-Illite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si4O12Ca0.5-Montmorillonite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Nacrite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Kaolinite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Dickite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/Na2CO3-Natrite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/MgCO3-Magnesite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/Li2CO3-Zabuyelite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/CaMgC2O6-Dolomite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/CaCO3-Calcite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/WC.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/W2C.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-Moissanite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-6H-alpha.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-3C-beta.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-2H-Moissanite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/NiAs-Nickeline.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/InAs.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/GaAs.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/CoAs3-Skutterudite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/Co.87Fe.11Ni.13As3-Skutterudite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/BAs.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/AlAs.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/antimonides -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/antimonides/InSb.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/antimonides/GaSb.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/antimonides/AlSb.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/pkgconfig/avogadro.pc -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/bin/avopkg -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/features/avogadro.prf -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/animation.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/atom.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/bond.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/camera.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/color3f.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/colorbutton.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/color.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/config.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/cube.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/dockextension.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/dockwidget.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/elementtranslator.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/engine.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/extension.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/fragment.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/glhit.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/global.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/glwidget.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/idlist.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/meshgenerator.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/mesh.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/moleculefile.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/molecule.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/navigate.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/neighborlist.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/obeigenconv.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/painterdevice.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/painter.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/periodictableview.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/plotaxis.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/plotobject.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/plotpoint.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/plotwidget.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/plugin.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/pluginmanager.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/primitive.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/primitivelist.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/protein.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/residue.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/textmatrixeditor.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/toolgroup.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/tool.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/undosequence.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/zmatrix.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/pythoninterpreter.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/pythonscript.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/avogadro/pythonerror.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/libavogadro.so.1.2.0 -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/libavogadro.so.1 -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/libavogadro.so -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_ar.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_bg.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_bs.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_ca.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_ca@valencia.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_cs.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_da.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_de.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_el.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_en_AU.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_en_CA.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_en_GB.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_es.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_et.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_eu.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_fi.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_fr.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_gl.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_he.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_hi.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_hu.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_id.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_it.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_ja.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_kn.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_ko.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_ms.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_nb.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_nl.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_oc.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_pl.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_pt.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_pt_BR.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_ru.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_sk.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_sl.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_sq.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_sr.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_sv.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_th.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_tr.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_ug.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_uk.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_vi.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_zh_CN.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/libavogadro_zh_TW.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/AvogadroTargets.cmake -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/AvogadroTargets-none.cmake -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/labelengine.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/labelengine.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/wireengine.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/wireengine.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/hbondengine.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/hbondengine.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/forceengine.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/forceengine.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/sphereengine.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/sphereengine.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/stickengine.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/stickengine.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/ribbonengine.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/ribbonengine.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/cartoonengine.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/cartoonengine.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/ringengine.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/ringengine.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/polygonengine.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/polygonengine.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/surfaceengine.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/surfaceengine.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/axesengine.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/axesengine.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/dipoleengine.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/dipoleengine.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/simplewireengine.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/simplewireengine.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/qtaimengine.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/engines/qtaimengine.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/engineScripts/wireframe.py -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/tools/drawtool.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/tools/drawtool.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/tools/bondcentrictool.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/tools/bondcentrictool.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/tools/clickmeasuretool.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/tools/clickmeasuretool.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/tools/selectrotatetool.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/tools/selectrotatetool.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/tools/autoopttool.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/tools/autoopttool.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/tools/manipulatetool.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/tools/manipulatetool.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/tools/autorotatetool.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/tools/autorotatetool.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/tools/aligntool.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/tools/aligntool.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/propextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/propextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/cartesianextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/cartesianextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/molecularpropextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/molecularpropextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/forcefieldextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/forcefieldextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/hydrogensextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/hydrogensextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/invertchiralextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/invertchiralextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/selectextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/selectextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/insertfragmentextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/insertfragmentextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/insertpeptideextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/insertpeptideextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/insertdnaextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/insertdnaextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/h2methylextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/h2methylextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/pythonterminal.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/pythonterminal.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/extensionScripts/example.py -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/animationextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/animationextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/povrayextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/povrayextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/vrmlextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/vrmlextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/fileimportextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/fileimportextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/shaderextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/shaderextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/clip.vert -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/gooch.vert -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/light.vert -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/marble.vert -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/per-pixel-lighting.vert -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/per_pixel2.vert -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/phong-use-diffuse.vert -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/phong.vert -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/plasma.vert -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/x-ray-cryos.vert -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/x-ray.vert -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/clip.frag -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/gooch.frag -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/light.frag -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/marble.frag -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/per-pixel-lighting.frag -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/per_pixel2.frag -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/phong-use-diffuse.frag -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/phong.frag -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/plasma.frag -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/x-ray-cryos.frag -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/x-ray.frag -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/phong.params -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/x-ray-cryos.params -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/libavogadro/shaders/x-ray.params -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/supercellextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/supercellextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/networkfetchextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/networkfetchextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/gl2psextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/gl2psextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/symmetryextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/symmetryextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/cmake/libmsym/libmsymConfig.cmake -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/cmake/libmsym/libmsymConfigVersion.cmake -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/libmsym.a -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/libmsym/msym.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/include/libmsym/msym_error.h -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/cmake/libmsym/libmsymTargets.cmake -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/cmake/libmsym/libmsymTargets-none.cmake -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/crystallographyextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/crystallographyextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/vibrationextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/vibrationextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/spectraextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/spectraextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/surfaceextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/surfaceextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/orbitalextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/orbitalextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/bin/qube -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/bin/qube" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/libavogadro_OpenQube.so.0.1.0 -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/libavogadro_OpenQube.so.0 -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/libavogadro_OpenQube.so -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/swcntbuilderextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/swcntbuilderextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/qtaimextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/qtaimextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/inputfileextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/inputfileextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/gamessextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/gamessextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/orcaextension.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/extensions/orcaextension.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/colors/residuecolor.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/colors/residuecolor.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/colors/atomindexcolor.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/colors/atomindexcolor.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/colors/chargecolor.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/colors/chargecolor.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/colors/distancecolor.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/colors/distancecolor.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/colors/customcolor.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/colors/customcolor.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/colors/smartscolor.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/colors/smartscolor.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/python2.7/dist-packages/Avogadro.so -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/lib/python2.7/dist-packages/Avogadro.so" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/bin/avogadro -- Set runtime path of "/build/avogadro-1.2.0/debian/tmp/usr/bin/avogadro" to "" -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_af.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_ar.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_bg.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_ca.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_ca@valencia.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_cs.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_da.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_de.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_el.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_en_AU.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_en_CA.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_en_GB.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_es.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_et.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_eu.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_fi.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_fr.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_fr_CA.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_gl.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_he.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_hi.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_hr.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_hu.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_id.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_it.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_ja.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_kn.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_ko.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_ms.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_nb.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_nl.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_oc.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_pl.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_pt.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_pt_BR.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_ru.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_sk.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_sl.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_sq.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_sr.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_sv.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_ta.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_te.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_th.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_tr.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_ug.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_uk.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_vi.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_zh_CN.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/i18n/avogadro_zh_TW.qm -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/applications/avogadro.desktop -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/pixmaps/avogadro-icon.png -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/man/man1/avogadro.1 -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/man/man1/avopkg.1 make[1]: Leaving directory '/build/avogadro-1.2.0/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/avogadro-1.2.0' dh_install --list-missing dh_install: Please use dh_missing --list-missing/--fail-missing instead dh_install: This feature will be removed in compat 12. dh_missing: usr/share/libavogadro/extensionScripts/example.py exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/libmsym.a exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/libmsym/libmsymTargets-none.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/libmsym/libmsymTargets.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/libmsym/libmsymConfigVersion.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/libmsym/libmsymConfig.cmake exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: avogadro (6), avogadro-data (4), libavogadro-dev (11), libavogadro1 (8), python-avogadro (2) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built For a short-term work-around: Add the files to debian/not-installed make[1]: Leaving directory '/build/avogadro-1.2.0' dh_installdocs dh_installchangelogs dh_installexamples dh_installman debian/rules override_dh_python2 make[1]: Entering directory '/build/avogadro-1.2.0' dh_python2 -ppython-avogadro I: dh_python2 fs:343: renaming Avogadro.so to Avogadro.x86_64-linux-gnu.so /usr/share/dh-python/dh_python2:67: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead 'libpython%s: %s', so_version, fn) W: dh_python2 dh_python2:67: public extension linked with libpython2.7: Avogadro.x86_64-linux-gnu.so dh_numpy -ppython-avogadro dh_sip make[1]: Leaving directory '/build/avogadro-1.2.0' dh_installmenu dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package python-avogadro: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package libavogadro-dev: substitution variable ${sip:Depends} unused, but is defined dpkg-gencontrol: warning: package avogadro: substitution variable ${sip:Depends} unused, but is defined dpkg-gencontrol: warning: package libavogadro1: substitution variable ${sip:Depends} unused, but is defined dpkg-gencontrol: warning: package avogadro-data: substitution variable ${sip:Depends} unused, but is defined dpkg-gencontrol: warning: package python-avogadro: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package avogadro: substitution variable ${sip:Depends} unused, but is defined dpkg-gencontrol: warning: package libavogadro1: substitution variable ${sip:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'libavogadro1' in '../libavogadro1_1.2.0-4_amd64.deb'. dpkg-deb: building package 'avogadro-dbgsym' in '../avogadro-dbgsym_1.2.0-4_amd64.deb'. dpkg-deb: building package 'libavogadro1-dbgsym' in '../libavogadro1-dbgsym_1.2.0-4_amd64.deb'. dpkg-deb: building package 'libavogadro-dev' in '../libavogadro-dev_1.2.0-4_amd64.deb'. dpkg-deb: building package 'avogadro-data' in '../avogadro-data_1.2.0-4_all.deb'. dpkg-deb: building package 'python-avogadro-dbgsym' in '../python-avogadro-dbgsym_1.2.0-4_amd64.deb'. dpkg-deb: building package 'avogadro' in '../avogadro_1.2.0-4_amd64.deb'. dpkg-deb: building package 'python-avogadro' in '../python-avogadro_1.2.0-4_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../avogadro_1.2.0-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/63354/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/63354/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/63354 and its subdirectories I: Current time: Sun Aug 8 06:36:27 +14 2021 I: pbuilder-time-stamp: 1628354187