I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 17 11:16:09 +14 2021 I: pbuilder-time-stamp: 1623878169 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [proftmb_1.1.12-9.dsc] I: copying [./proftmb_1.1.12.orig.tar.gz] I: copying [./proftmb_1.1.12-9.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.yM4PPEVL/trustedkeys.kbx': General error gpgv: Signature made Thu Nov 26 21:13:30 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./proftmb_1.1.12-9.dsc dpkg-source: info: extracting proftmb in proftmb-1.1.12 dpkg-source: info: unpacking proftmb_1.1.12.orig.tar.gz dpkg-source: info: unpacking proftmb_1.1.12-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying avoid-dnl-in-makefiles.diff dpkg-source: info: applying gcc-6.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/837/tmp/hooks/D01_modify_environment starting debug: Running on ionos12-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/837/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/837/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=a806ee83c1fc48adafea647a8cc523a5 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=837 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.TjyAPcvSNP/pbuilderrc_8htX --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.TjyAPcvSNP/b2 --logfile b2/build.log --extrapackages usrmerge proftmb_1.1.12-9.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 4.19.0-16-686-pae #1 SMP Debian 4.19.181-1 (2021-03-19) i686 GNU/Linux I: ls -l /bin total 5784 -rwxr-xr-x 1 root root 1367848 Feb 25 10:57 bash -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp -rwxr-xr-x 1 root root 128724 Dec 11 2020 dash -rwxr-xr-x 1 root root 124904 Sep 23 2020 date -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd -rwxr-xr-x 1 root root 100752 Sep 23 2020 df -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir -rwxr-xr-x 1 root root 83644 Feb 8 04:38 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 8 04:38 findmnt -rwsr-xr-x 1 root root 30112 Feb 27 06:12 fusermount -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe -rwxr-xr-x 1 root root 100952 Mar 3 13:30 gzip -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln -rwxr-xr-x 1 root root 55572 Feb 8 2020 login -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls -rwxr-xr-x 1 root root 153124 Feb 8 04:38 lsblk -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 8 04:38 more -rwsr-xr-x 1 root root 50720 Feb 8 04:38 mount -rwxr-xr-x 1 root root 13856 Feb 8 04:38 mountpoint -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Feb 25 10:57 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Jun 17 11:19 sh -> bash lrwxrwxrwx 1 root root 4 Jun 16 23:27 sh.distrib -> dash -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty -rwsr-xr-x 1 root root 79396 Feb 8 04:38 su -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync -rwxr-xr-x 1 root root 602584 Feb 17 23:55 tar -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch -rwxr-xr-x 1 root root 34664 Sep 23 2020 true -rwxr-xr-x 1 root root 17768 Feb 27 06:12 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 8 04:38 umount -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 8 04:38 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew I: user script /srv/workspace/pbuilder/837/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man, libgsl-dev, opt dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on opt; however: Package opt is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgsl-dev{a} libgsl25{a} libgslcblas0{a} libicu67{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} opt{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 21.0 MB of archives. After unpacking 78.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 liblocale-gettext-perl i386 1.07-4+b1 [19.4 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 help2man i386 1.48.1 [190 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libgslcblas0 i386 2.6+dfsg-2 [99.2 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 libgsl25 i386 2.6+dfsg-2 [911 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libgsl-dev i386 2.6+dfsg-2 [1146 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 opt i386 3.19-1.3+b1 [47.5 kB] Fetched 21.0 MB in 7s (3122 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../01-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../05-liblocale-gettext-perl_1.07-4+b1_i386.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.39-3_i386.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../08-libmagic1_1%3a5.39-3_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.39-3_i386.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../11-libsigsegv2_2.13-1_i386.deb ... Unpacking libsigsegv2:i386 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-5_i386.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../21-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../24-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:i386. Preparing to unpack .../26-libicu67_67.1-6_i386.deb ... Unpacking libicu67:i386 (67.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../27-libxml2_2.9.10+dfsg-6.7_i386.deb ... Unpacking libxml2:i386 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.21-4_i386.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package help2man. Preparing to unpack .../32-help2man_1.48.1_i386.deb ... Unpacking help2man (1.48.1) ... Selecting previously unselected package libgslcblas0:i386. Preparing to unpack .../33-libgslcblas0_2.6+dfsg-2_i386.deb ... Unpacking libgslcblas0:i386 (2.6+dfsg-2) ... Selecting previously unselected package libgsl25:i386. Preparing to unpack .../34-libgsl25_2.6+dfsg-2_i386.deb ... Unpacking libgsl25:i386 (2.6+dfsg-2) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../35-libgsl-dev_2.6+dfsg-2_i386.deb ... Unpacking libgsl-dev (2.6+dfsg-2) ... Selecting previously unselected package opt. Preparing to unpack .../36-opt_3.19-1.3+b1_i386.deb ... Unpacking opt (3.19-1.3+b1) ... Setting up libpipeline1:i386 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:i386 (67.1-6) ... Setting up libgslcblas0:i386 (2.6+dfsg-2) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libgsl25:i386 (2.6+dfsg-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:i386 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... 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Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B] Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.5 kB in 0s (2194 kB/s) Selecting previously unselected package libnumber-compare-perl. (Reading database ... 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I: Building the package I: Running cd /build/proftmb-1.1.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package proftmb dpkg-buildpackage: info: source version 1.1.12-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:9: installing './compile' configure.ac:50: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:50: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:50: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') dh_auto_configure ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for ranlib... ranlib checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for main in -lopt... yes checking for main in -lm... yes checking for main in -lgslcblas... yes checking for main in -lgsl... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking gsl/gsl_errno.h usability... yes checking gsl/gsl_errno.h presence... yes checking for gsl/gsl_errno.h... yes checking opt.h usability... yes checking opt.h presence... yes checking for opt.h... yes checking for an ANSI C-conforming const... yes checking for --enable-debug... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating examples/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j10 make[1]: Entering directory '/build/proftmb-1.1.12' make all-recursive make[2]: Entering directory '/build/proftmb-1.1.12' Making all in examples make[3]: Entering directory '/build/proftmb-1.1.12/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/proftmb-1.1.12/examples' Making all in src make[3]: Entering directory '/build/proftmb-1.1.12/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o proftmb.o proftmb.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Backward.o Backward.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o BaumWelch.o BaumWelch.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Eval.o Eval.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ExpectA.o ExpectA.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ExpectC.o ExpectC.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Forward.o Forward.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o GradientDescent.o GradientDescent.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HMMEval.o HMMEval.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HMMOutput.o HMMOutput.cpp In file included from GradientDescent.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ In file included from Forward.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from Forward.cpp:2: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ In file included from Backward.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from TrainSeq.h:5, from GradientDescent.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from HMMOutput.h:4, from HMMOutput.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from HMMOutput.h:5, from HMMOutput.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ In file included from HTools.h:4, from Backward.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from TrainSeq.h:5, from ExpectA.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from TrainSeq.h:6, from ExpectA.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from HMMOutput.cpp:1: HMMOutput.h:21:46: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 21 | void DisplayArch(ostream&,Par&,uint,char* =""); | ^ HMMOutput.h:24:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 24 | void PrintEmit(ostream&,Par&,uint,char* =""); | ^ In file included from HMMOutput.cpp:2: Eval.h:48:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 48 | float RelativeEntropy(vector& A, vector& B) throw (char *); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from TrainSeq.h:5, from HMMEval.h:5, from HMMEval.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from TrainSeq.h:6, from HMMEval.h:5, from HMMEval.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ In file included from BaumWelch.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from TrainSeq.h:5, from Eval.h:11, from Eval.cpp:6: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from TrainSeq.h:6, from Eval.h:11, from Eval.cpp:6: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ In file included from TrainSeq.h:5, from BaumWelch.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from Eval.cpp:6: Eval.h:48:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 48 | float RelativeEntropy(vector& A, vector& B) throw (char *); | ^~~~~ In file included from TrainSeq.h:5, from ExpectC.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from TrainSeq.h:6, from ExpectC.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ Eval.cpp:654:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 654 | float RelativeEntropy(vector& A, vector& B) throw (char *){ | ^~~~~ In file included from proftmb.cpp:14: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from TrainSeq.h:5, from proftmb.cpp:15: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from proftmb.cpp:18: HMMOutput.h:21:46: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 21 | void DisplayArch(ostream&,Par&,uint,char* =""); | ^ HMMOutput.h:24:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 24 | void PrintEmit(ostream&,Par&,uint,char* =""); | ^ In file included from proftmb.cpp:20: Zscore.h:9:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 9 | Z_Calibrate(set >&,int,double) throw (string&); | ^~~~~ In file included from proftmb.cpp:22: Eval.h:48:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 48 | float RelativeEntropy(vector& A, vector& B) throw (char *); | ^~~~~ proftmb.cpp:68:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 68 | const char *, double, Par&, const char*, bool) throw (string &); | ^~~~~ proftmb.cpp:273:78: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 273 | const char *datfile, double cut, Par& m, const char *name, bool multiQ) throw (string &) { | ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HTools.o HTools.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Krogh1Best.o Krogh1Best.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Load.o Load.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Output.o Output.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Par.o Par.cpp In file included from HTools.h:4, from HTools.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from HTools.h:5, from HTools.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Params.o Params.cpp In file included from Krogh1Best.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from Krogh1Best.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from TrainSeq.h:5, from Load.h:4, from Load.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from TrainSeq.h:6, from Load.h:4, from Load.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from Par.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from Params.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from TrainSeq.h:5, from Load.h:4, from Par.cpp:4: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Posterior.o Posterior.cpp Par.cpp:263:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 263 | void Par::LoadConnect(char* cf) throw (string&){ | ^~~~~ Par.cpp:348:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 348 | void Par::LoadL2L(char* l2lfile) throw (string&){ | ^~~~~ Par.cpp:415:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 415 | void Par::LoadL2A(char* l2afile) throw (string&){ | ^~~~~ Par.cpp:554:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 554 | void Par::LoadA2E(char* a2efile) throw (string&){ | ^~~~~ Par.cpp:652:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 652 | vector& redux) throw (string&){ | ^~~~~ Par.cpp:742:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 742 | void Par::ReadZCurve(char *ifile) throw (string&){ | ^~~~~ Par.cpp:763:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 763 | void Par::ReadNullFreq(char *ifile) throw (string&){ | ^~~~~ In file included from Posterior.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from Posterior.cpp:2: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Regularization.o Regularization.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Seq.o Seq.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Sov.o Sov.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o structs.o structs.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Tally.o Tally.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Tools.o Tools.cpp In file included from Regularization.cpp:7: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from structs.cpp:2: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from Seq.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from Seq.cpp:4: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from TrainSeq.h:5, from Tally.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from TrainSeq.h:6, from Tally.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ Seq.cpp:99:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 99 | bool Seq::InitLabels(SS& sdat) throw (string&){ | ^~~~~ Seq.cpp:313:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 313 | map Seq::Read(char* file) throw (string&){ | ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o TrainSeq.o TrainSeq.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Viterbi.o Viterbi.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Zscore.o Zscore.cpp sed -e 's|__pkgdatadir__|/usr/share/proftmb|g;s|__datadir__|/usr/share|g;s|__PACKAGE__|proftmb|g;' < proftmb_example.txt.raw > proftmb_example.txt In file included from TrainSeq.h:5, from TrainSeq.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from TrainSeq.h:6, from TrainSeq.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ In file included from Zscore.cpp:24: Zscore.h:9:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 9 | Z_Calibrate(set >&,int,double) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ Zscore.cpp:36:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | int windowsize,double zmax) throw (string&){ | ^~~~~ In file included from Viterbi.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from Viterbi.cpp:2: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ rm -f libhmm.a ar cru libhmm.a Backward.o BaumWelch.o Eval.o ExpectA.o ExpectC.o Forward.o GradientDescent.o HMMEval.o HMMOutput.o HTools.o Krogh1Best.o Load.o Output.o Par.o Params.o Posterior.o Regularization.o Seq.o Sov.o structs.o Tally.o Tools.o TrainSeq.o Viterbi.o Zscore.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libhmm.a g++ -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o proftmb proftmb.o libhmm.a -lgsl -lgslcblas -lm -lopt help2man -n 'per-residue prediction of bacterial transmembrane beta barrels' --output=proftmb.1 --no-info --include=proftmb_example.txt ./proftmb make[3]: Leaving directory '/build/proftmb-1.1.12/src' make[3]: Entering directory '/build/proftmb-1.1.12' make[3]: Leaving directory '/build/proftmb-1.1.12' make[2]: Leaving directory '/build/proftmb-1.1.12' make[1]: Leaving directory '/build/proftmb-1.1.12' dh_auto_test make -j10 check VERBOSE=1 make[1]: Entering directory '/build/proftmb-1.1.12' Making check in examples make[2]: Entering directory '/build/proftmb-1.1.12/examples' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/proftmb-1.1.12/examples' Making check in src make[2]: Entering directory '/build/proftmb-1.1.12/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/proftmb-1.1.12/src' make[2]: Entering directory '/build/proftmb-1.1.12' make[2]: Leaving directory '/build/proftmb-1.1.12' make[1]: Leaving directory '/build/proftmb-1.1.12' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j10 install DESTDIR=/build/proftmb-1.1.12/debian/proftmb AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/proftmb-1.1.12' Making install in examples make[2]: Entering directory '/build/proftmb-1.1.12/examples' make[3]: Entering directory '/build/proftmb-1.1.12/examples' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb/examples' /usr/bin/install -c -m 644 16761001.Q 1a0s_P.f.1.Q 1af6_A.f.2.Q 1bt9_A.f.3.Q 1fep_A.f.4.Q 1prn.f.5.Q 1qd5_A.f.6.Q 1qj9_A.f.7.Q 1qjp_A.f.8.Q CADN_HUMAN.Q example.Q example_dat.txt example_proftmb_pretty.txt example_proftmb_tabular.txt YQIB_ECOLI.Q '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb/examples' make[3]: Leaving directory '/build/proftmb-1.1.12/examples' make[2]: Leaving directory '/build/proftmb-1.1.12/examples' Making install in src make[2]: Entering directory '/build/proftmb-1.1.12/src' make[3]: Entering directory '/build/proftmb-1.1.12/src' /usr/bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/bin' /usr/bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/share/man/man1' /usr/bin/install -c proftmb '/build/proftmb-1.1.12/debian/proftmb/usr/bin' /usr/bin/install -c -m 644 proftmb.1 '/build/proftmb-1.1.12/debian/proftmb/usr/share/man/man1' make[3]: Leaving directory '/build/proftmb-1.1.12/src' make[2]: Leaving directory '/build/proftmb-1.1.12/src' make[2]: Entering directory '/build/proftmb-1.1.12' make[3]: Entering directory '/build/proftmb-1.1.12' make[3]: Nothing to be done for 'install-exec-am'. mkdir -p "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" /usr/bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb' cp "."/input/* "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb/" /usr/bin/install -c -m 644 README '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb' rm -rf `find "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" -name .svn` find "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" -type d -exec chmod 0755 {} \; find "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" -type f -exec chmod 0644 {} \; make install-data-hook make[4]: Entering directory '/build/proftmb-1.1.12' sed --in-place -e 's|__pkgdatadir__|/usr/share/proftmb|g' "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb/options" make[4]: Leaving directory '/build/proftmb-1.1.12' make[3]: Leaving directory '/build/proftmb-1.1.12' make[2]: Leaving directory '/build/proftmb-1.1.12' make[1]: Leaving directory '/build/proftmb-1.1.12' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/proftmb-1.1.12' dh_compress -Xexample.Q make[1]: Leaving directory '/build/proftmb-1.1.12' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'proftmb' in '../proftmb_1.1.12-9_i386.deb'. dpkg-deb: building package 'proftmb-dbgsym' in '../proftmb-dbgsym_1.1.12-9_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../proftmb_1.1.12-9_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/837/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/837/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/837 and its subdirectories I: Current time: Thu Jun 17 11:20:54 +14 2021 I: pbuilder-time-stamp: 1623878454