I: pbuilder: network access will be disabled during build I: Current time: Sun Jul 11 12:47:15 +14 2021 I: pbuilder-time-stamp: 1625957235 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqmagick_0.8.4-1.dsc] I: copying [./seqmagick_0.8.4.orig.tar.gz] I: copying [./seqmagick_0.8.4-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.sBQxK3hn/trustedkeys.kbx': General error gpgv: Signature made Thu Dec 10 03:43:01 2020 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./seqmagick_0.8.4-1.dsc dpkg-source: info: extracting seqmagick in seqmagick-0.8.4 dpkg-source: info: unpacking seqmagick_0.8.4.orig.tar.gz dpkg-source: info: unpacking seqmagick_0.8.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying biopython_1.71_dual_coding_support.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/15137/tmp/hooks/D01_modify_environment starting debug: Running on ff64a. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/15137/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/15137/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=6' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=7ca44498b7c944cca87a69f9e7cf78ec LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=15137 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.vgE1dVwvru/pbuilderrc_op1t --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.vgE1dVwvru/b2 --logfile b2/build.log --extrapackages usrmerge seqmagick_0.8.4-1.dsc' SUDO_GID=114 SUDO_UID=109 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:8000/ I: uname -a Linux i-capture-the-hostname 5.10.0-7-arm64 #1 SMP Debian 5.10.40-1 (2021-05-28) aarch64 GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Jun 22 16:26 bash -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash -rwxr-xr-x 1 root root 75880 Sep 23 2020 date -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd -rwxr-xr-x 1 root root 59912 Sep 23 2020 df -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir -rwxr-xr-x 1 root root 55012 Feb 8 04:38 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 22496 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 47492 Feb 8 04:38 findmnt -rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe -rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln -rwxr-xr-x 1 root root 35068 Feb 8 2020 login -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls -rwxr-xr-x 1 root root 99940 Feb 8 04:38 lsblk -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 34408 Feb 8 04:38 more -rwsr-xr-x 1 root root 34400 Feb 8 04:38 mount -rwxr-xr-x 1 root root 9824 Feb 8 04:38 mountpoint -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Jul 11 12:48 sh -> bash lrwxrwxrwx 1 root root 4 Jul 10 23:28 sh.distrib -> dash -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty -rwsr-xr-x 1 root root 46704 Feb 8 04:38 su -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync -rwxr-xr-x 1 root root 340872 Feb 17 23:55 tar -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch -rwxr-xr-x 1 root root 22496 Sep 23 2020 true -rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server -rwsr-xr-x 1 root root 22108 Feb 8 04:38 umount -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir -rwxr-xr-x 1 root root 38512 Feb 8 04:38 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew I: user script /srv/workspace/pbuilder/15137/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-nose, python3-biopython, python3-pygtrie dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-pygtrie; however: Package python3-pygtrie is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} po-debconf{a} python3{a} python3-all{a} python3-biopython{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-nose{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-pygtrie{a} python3-reportlab{a} python3-reportlab-accel{a} python3-setuptools{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile python3-renderpm wget 0 packages upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 33.4 MB of archives. After unpacking 124 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-7 [138 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf libpython3.9-minimal armhf 3.9.2-1 [790 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf python3.9-minimal armhf 3.9.2-1 [1630 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf mailcap all 3.69 [31.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf mime-support all 3.66 [10.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf libmpdec3 armhf 2.5.1-1 [74.9 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf readline-common all 8.1-1 [73.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf libreadline8 armhf 8.1-1 [147 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf libpython3.9-stdlib armhf 3.9.2-1 [1608 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf python3.9 armhf 3.9.2-1 [466 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf python3 armhf 3.9.2-3 [37.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 31 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 32 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 33 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 36 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 37 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 38 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 39 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 40 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 41 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB] Get: 42 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 43 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 44 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Get: 46 http://deb.debian.org/debian bullseye/main armhf python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 47 http://deb.debian.org/debian bullseye/main armhf python3-distutils all 3.9.2-1 [143 kB] Get: 48 http://deb.debian.org/debian bullseye/main armhf dh-python all 4.20201102+nmu1 [99.4 kB] Get: 49 http://deb.debian.org/debian bullseye/main armhf libblas3 armhf 3.9.0-3 [109 kB] Get: 50 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB] Get: 51 http://deb.debian.org/debian bullseye/main armhf libmd0 armhf 1.0.3-3 [27.4 kB] Get: 52 http://deb.debian.org/debian bullseye/main armhf libbsd0 armhf 0.11.3-1 [103 kB] Get: 53 http://deb.debian.org/debian bullseye/main armhf libdeflate0 armhf 1.7-1 [43.1 kB] Get: 54 http://deb.debian.org/debian bullseye/main armhf libpng16-16 armhf 1.6.37-3 [277 kB] Get: 55 http://deb.debian.org/debian bullseye/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [357 kB] Get: 56 http://deb.debian.org/debian bullseye/main armhf libgfortran5 armhf 10.2.1-6 [237 kB] Get: 57 http://deb.debian.org/debian bullseye/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB] Get: 58 http://deb.debian.org/debian bullseye/main armhf libjbig0 armhf 2.1-3.1+b2 [28.4 kB] Get: 59 http://deb.debian.org/debian bullseye/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [123 kB] Get: 60 http://deb.debian.org/debian bullseye/main armhf liblapack3 armhf 3.9.0-3 [1651 kB] Get: 61 http://deb.debian.org/debian bullseye/main armhf liblcms2-2 armhf 2.12~rc1-2 [123 kB] Get: 62 http://deb.debian.org/debian bullseye/main armhf libwebp6 armhf 0.6.1-2.1 [226 kB] Get: 63 http://deb.debian.org/debian bullseye/main armhf libtiff5 armhf 4.2.0-1 [271 kB] Get: 64 http://deb.debian.org/debian bullseye/main armhf libwebpdemux2 armhf 0.6.1-2.1 [86.7 kB] Get: 65 http://deb.debian.org/debian bullseye/main armhf libwebpmux3 armhf 0.6.1-2.1 [94.2 kB] Get: 66 http://deb.debian.org/debian bullseye/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 67 http://deb.debian.org/debian bullseye/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 68 http://deb.debian.org/debian bullseye/main armhf libxcb1 armhf 1.14-3 [136 kB] Get: 69 http://deb.debian.org/debian bullseye/main armhf python3-all armhf 3.9.2-3 [1056 B] Get: 70 http://deb.debian.org/debian bullseye/main armhf python3-pkg-resources all 52.0.0-4 [190 kB] Get: 71 http://deb.debian.org/debian bullseye/main armhf python3-numpy armhf 1:1.19.5-1 [2981 kB] Get: 72 http://deb.debian.org/debian bullseye/main armhf python3-reportlab-accel armhf 3.5.59-1 [37.3 kB] Get: 73 http://deb.debian.org/debian bullseye/main armhf python3-pil armhf 8.1.2+dfsg-0.2 [414 kB] Get: 74 http://deb.debian.org/debian bullseye/main armhf python3-reportlab all 3.5.59-1 [575 kB] Get: 75 http://deb.debian.org/debian bullseye/main armhf python3-biopython armhf 1.78+dfsg-4 [1383 kB] Get: 76 http://deb.debian.org/debian bullseye/main armhf python3-nose all 1.3.7-7 [133 kB] Get: 77 http://deb.debian.org/debian bullseye/main armhf python3-pygtrie all 2.2-1.1 [16.4 kB] Get: 78 http://deb.debian.org/debian bullseye/main armhf python3-setuptools all 52.0.0-4 [366 kB] Fetched 33.4 MB in 6s (6039 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_armhf.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../1-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_armhf.deb ... 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Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:armhf (1.0.9-2+b2) ... Setting up libmagic1:armhf (1:5.39-3) ... Setting up libdeflate0:armhf (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libjbig0:armhf (2.1-3.1+b2) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libjpeg62-turbo:armhf (1:2.0.6-4) ... Setting up libsigsegv2:armhf (2.13-1) ... Setting up libimagequant0:armhf (2.12.2-1.1) ... Setting up libpng16-16:armhf (1.6.37-3) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:armhf (0.6.1-2.1) ... Setting up libgfortran5:armhf (10.2.1-6) ... Setting up libmd0:armhf (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libmpdec3:armhf (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libtiff5:armhf (4.2.0-1) ... Setting up libwebpmux3:armhf (0.6.1-2.1) ... Setting up libbsd0:armhf (0.11.3-1) ... Setting up mailcap (3.69) ... Setting up libelf1:armhf (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:armhf (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up liblapack3:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.14-3) ... Setting up gettext (0.21-4) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15) ... Setting up libwebpdemux2:armhf (0.6.1-2.1) ... Setting up libreadline8:armhf (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libfreetype6:armhf (2.10.4+dfsg-1) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:armhf (3.9.2-1) ... Setting up libpython3-stdlib:armhf (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up python3.9 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-pil:armhf (8.1.2+dfsg-0.2) ... Setting up python3-pygtrie (2.2-1.1) ... Setting up python3-reportlab-accel:armhf (3.5.59-1) ... Setting up python3-reportlab (3.5.59-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-all (3.9.2-3) ... Setting up python3-nose (1.3.7-7) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-biopython (1.78+dfsg-4) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl The following NEW packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 59.5 kB of archives. After this operation, 157 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main armhf libnumber-compare-perl all 0.03-1.1 [6956 B] Get:2 http://deb.debian.org/debian bullseye/main armhf libtext-glob-perl all 0.11-1 [8888 B] Get:3 http://deb.debian.org/debian bullseye/main armhf libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:4 http://deb.debian.org/debian bullseye/main armhf usrmerge all 25 [13.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.5 kB in 0s (719 kB/s) Selecting previously unselected package libnumber-compare-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24092 files and directories currently installed.) Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... Unpacking libnumber-compare-perl (0.03-1.1) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... Unpacking libtext-glob-perl (0.11-1) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... Unpacking libfile-find-rule-perl (0.34-1) ... Selecting previously unselected package usrmerge. Preparing to unpack .../archives/usrmerge_25_all.deb ... Unpacking usrmerge (25) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libnumber-compare-perl (0.03-1.1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up usrmerge (25) ... The system has been successfully converted. Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. I: Building the package hostname: Name or service not known I: Running cd /build/seqmagick-0.8.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqmagick_0.8.4-1_source.changes dpkg-buildpackage: info: source package seqmagick dpkg-buildpackage: info: source version 0.8.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: ingresso nella directory «/build/seqmagick-0.8.4» dh_auto_clean I: pybuild base:232: python3.9 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:475: UserWarning: The version specified ('') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. warnings.warn( running clean removing '/build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf seqmagick/data rm -rf seqmagick.egg-info make[1]: uscita dalla directory «/build/seqmagick-0.8.4» dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:475: UserWarning: The version specified ('') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. warnings.warn( running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:475: UserWarning: The version specified ('') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. warnings.warn( running build running build_py creating /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick copying seqmagick/transform.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick copying seqmagick/fileformat.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick copying seqmagick/__init__.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick creating /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands copying seqmagick/subcommands/common.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands copying seqmagick/subcommands/quality_filter.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands copying seqmagick/subcommands/info.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands copying seqmagick/subcommands/extract_ids.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands copying seqmagick/subcommands/backtrans_align.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands copying seqmagick/subcommands/convert.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands copying seqmagick/subcommands/__init__.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands copying seqmagick/subcommands/mogrify.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands copying seqmagick/subcommands/primer_trim.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands creating /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test copying seqmagick/test/test_primer_trim.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test copying seqmagick/test/test_subcommands_quality_filter.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test copying seqmagick/test/__init__.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test copying seqmagick/test/test_transform.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test copying seqmagick/test/test_subcommands_backtrans_align.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test copying seqmagick/test/test_subcommands_convert.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test copying seqmagick/test/test_subcommands_common.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test creating /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/scripts copying seqmagick/scripts/__init__.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/scripts copying seqmagick/scripts/cli.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/scripts creating /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration copying seqmagick/test/integration/test_info.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration copying seqmagick/test/integration/test_convert.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration copying seqmagick/test/integration/__init__.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration copying seqmagick/test/integration/test_mogrify.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration copying seqmagick/test/integration/test_extract_ids.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration creating /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/__init__.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.nex -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input6.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta.bz2 -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input3.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output5.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input4_ambig.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2_ungap_cut.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output4.nex -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta.gz -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output4.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output3.nex -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input1.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output3.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input5.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.phy -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data dh_auto_test -O--buildsystem=pybuild I: pybuild base:232: cd /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build; python3.9 -m nose -v test_run (seqmagick.test.integration.test_convert.BasicConvertTestCase) ... ok test_run (seqmagick.test.integration.test_convert.BzipInputConvertTestCase) ... SKIP: bzip2 not supported test_run (seqmagick.test.integration.test_convert.BzipOutputConvertTestCase) ... SKIP: bzip2 not supported test_run (seqmagick.test.integration.test_convert.ConvertToNexusProteinTestCase) ... ok test_run (seqmagick.test.integration.test_convert.ConvertToNexusRNATestCase) ... ok test_run (seqmagick.test.integration.test_convert.ConvertToNexusTestCase) ... ok test_convert (seqmagick.test.integration.test_convert.ConvertToStdOutTestCase) ... ok test_convert_noformat (seqmagick.test.integration.test_convert.ConvertToStdOutTestCase) ... ok test_run (seqmagick.test.integration.test_convert.ConvertUngapCutTestCase) ... ok test_run (seqmagick.test.integration.test_convert.GzipInputConvertTestCase) ... ok test_run (seqmagick.test.integration.test_convert.GzipOutputConvertTestCase) ... ok test_run (seqmagick.test.integration.test_convert.TestConvertFromStdin) ... ok test_run (seqmagick.test.integration.test_convert.TestCutRelative) ... ok test_unknown_seq (seqmagick.test.integration.test_convert.TestCutRelative) ... ok test_run (seqmagick.test.integration.test_convert.TestSample) ... ok test_run (seqmagick.test.integration.test_convert.TestStdin) ... ok test_run (seqmagick.test.integration.test_convert.TestTranslateAmbiguous) ... ok test_descriptions (seqmagick.test.integration.test_extract_ids.Bz2ExtractIdsTestCase) ... SKIP: bzip2 not supported test_ids (seqmagick.test.integration.test_extract_ids.Bz2ExtractIdsTestCase) ... SKIP: bzip2 not supported test_descriptions (seqmagick.test.integration.test_extract_ids.GzipExtractIdsTestCase) ... ok test_ids (seqmagick.test.integration.test_extract_ids.GzipExtractIdsTestCase) ... ok test_descriptions (seqmagick.test.integration.test_extract_ids.SimpleExtractIdsTestCase) ... ok test_ids (seqmagick.test.integration.test_extract_ids.SimpleExtractIdsTestCase) ... ok test_info (seqmagick.test.integration.test_info.MultithreadedInfoTestCase) ... ok test_info (seqmagick.test.integration.test_info.SimpleBzip2InfoTestCase) ... SKIP: bzip2 not supported test_info (seqmagick.test.integration.test_info.SimpleGzipInfoTestCase) ... ok test_info (seqmagick.test.integration.test_info.SimpleInfoTestCase) ... ok test_run (seqmagick.test.integration.test_mogrify.MogrifyBzipInputTestCase) ... SKIP: bzip2 not supported test_run (seqmagick.test.integration.test_mogrify.MogrifyGzipInputTestCase) ... ok test_run (seqmagick.test.integration.test_mogrify.MogrifyUngapCutTestCase) ... ok test_all_different (seqmagick.test.test_primer_trim.HammingDistanceTestCase) ... ok test_ambiguous (seqmagick.test.test_primer_trim.HammingDistanceTestCase) ... ok test_basic (seqmagick.test.test_primer_trim.HammingDistanceTestCase) ... ok test_no_difference (seqmagick.test.test_primer_trim.HammingDistanceTestCase) ... ok test_unequal_length (seqmagick.test.test_primer_trim.HammingDistanceTestCase) ... ok Should fail if reverse primer occurs before forward primer ... ok test_basic (seqmagick.test.test_primer_trim.LocatePrimersTestCase) ... ok test_no_forward (seqmagick.test.test_primer_trim.LocatePrimersTestCase) ... ok test_no_reverse (seqmagick.test.test_primer_trim.LocatePrimersTestCase) ... ok test_align_exact (seqmagick.test.test_primer_trim.PrimerAlignerTestCase) ... ok test_align_gap (seqmagick.test.test_primer_trim.PrimerAlignerTestCase) ... ok test_max_score (seqmagick.test.test_primer_trim.PrimerAlignerTestCase) ... ok test_map_alignment (seqmagick.test.test_subcommands_backtrans_align.AlignmentMapperTestCase) ... ok test_map_alignment_excess_codons (seqmagick.test.test_subcommands_backtrans_align.AlignmentMapperTestCase) ... ok test_map_alignment_insufficient_codons (seqmagick.test.test_subcommands_backtrans_align.AlignmentMapperTestCase) ... ok test_validate_invalid (seqmagick.test.test_subcommands_backtrans_align.AlignmentMapperTestCase) ... ok test_validate_valid (seqmagick.test.test_subcommands_backtrans_align.AlignmentMapperTestCase) ... ok test_doubles (seqmagick.test.test_subcommands_backtrans_align.BatchTestCase) ... ok test_no_input (seqmagick.test.test_subcommands_backtrans_align.BatchTestCase) ... ok test_partial (seqmagick.test.test_subcommands_backtrans_align.BatchTestCase) ... ok test_singletons (seqmagick.test.test_subcommands_backtrans_align.BatchTestCase) ... ok test_provided_umask (seqmagick.test.test_subcommands_common.ApplyUmaskTestCase) ... ok test_user_umask (seqmagick.test.test_subcommands_common.ApplyUmaskTestCase) ... ok test_exception_leaves_unchanged (seqmagick.test.test_subcommands_common.AtomicWriteTestCase) ... ok test_write (seqmagick.test.test_subcommands_common.AtomicWriteTestCase) ... ok test_negative (seqmagick.test.test_subcommands_common.CutRangeTestCase) ... ok test_no_end (seqmagick.test.test_subcommands_common.CutRangeTestCase) ... ok test_no_start (seqmagick.test.test_subcommands_common.CutRangeTestCase) ... ok test_out_of_order (seqmagick.test.test_subcommands_common.CutRangeTestCase) ... ok test_start (seqmagick.test.test_subcommands_common.CutRangeTestCase) ... ok test_read (seqmagick.test.test_subcommands_common.FileTypeTestCase) ... ok test_read_bz2 (seqmagick.test.test_subcommands_common.FileTypeTestCase) ... SKIP: bzip2 not supported test_read_gz (seqmagick.test.test_subcommands_common.FileTypeTestCase) ... ok test_read_text (seqmagick.test.test_subcommands_common.FileTypeTestCase) ... ok test_stdin (seqmagick.test.test_subcommands_common.FileTypeTestCase) ... ok test_stdout (seqmagick.test.test_subcommands_common.FileTypeTestCase) ... ok test_write (seqmagick.test.test_subcommands_common.FileTypeTestCase) ... ok test_multi_arg (seqmagick.test.test_subcommands_common.PartialAppendTestCase) ... ok test_no_arg (seqmagick.test.test_subcommands_common.PartialAppendTestCase) ... ok test_single_arg (seqmagick.test.test_subcommands_common.PartialAppendTestCase) ... ok test_negative (seqmagick.test.test_subcommands_common.PositiveValueTestCase) ... ok test_positive (seqmagick.test.test_subcommands_common.PositiveValueTestCase) ... ok test_zero (seqmagick.test.test_subcommands_common.PositiveValueTestCase) ... ok test_multiple (seqmagick.test.test_subcommands_common.SequenceSlicesTestCase) ... ok test_single (seqmagick.test.test_subcommands_common.SequenceSlicesTestCase) ... ok test_argument_type (seqmagick.test.test_subcommands_convert.ArgumentTypeTestCase) ... ok test_parse (seqmagick.test.test_subcommands_convert.ArgumentTypeTestCase) ... ok test_parse (seqmagick.test.test_subcommands_convert.IdModificationTransformsTestCase) ... ok test_parse (seqmagick.test.test_subcommands_convert.OrderRespectedTestCase) ... ok test_parse (seqmagick.test.test_subcommands_convert.SeqSelectTransformsTestCase) ... ok test_parse (seqmagick.test.test_subcommands_convert.SequenceModTransformsTestCase) ... ok test_four_nt (seqmagick.test.test_subcommands_quality_filter.AllUnambiguousTestCase) ... ok test_one_nt (seqmagick.test.test_subcommands_quality_filter.AllUnambiguousTestCase) ... ok Test that the first record (with no Ns) does not get filtered ... ok test_invalid_action (seqmagick.test.test_subcommands_quality_filter.AmbiguousBaseFilterTestCase) ... ok test_truncate (seqmagick.test.test_subcommands_quality_filter.AmbiguousBaseFilterTestCase) ... ok test_primer_in_file (seqmagick.test.test_subcommands_quality_filter.BarcodePrimerTrieTestCase) ... ok test_primer_provided (seqmagick.test.test_subcommands_quality_filter.BarcodePrimerTrieTestCase) ... ok test_1 (seqmagick.test.test_subcommands_quality_filter.MaxAmbiguousFilterTestCase) ... ok test_10 (seqmagick.test.test_subcommands_quality_filter.MaxAmbiguousFilterTestCase) ... ok test_none (seqmagick.test.test_subcommands_quality_filter.MaxAmbiguousFilterTestCase) ... ok test_all_truncated (seqmagick.test.test_subcommands_quality_filter.MaxLengthFilterTestCase) ... ok test_none_truncated (seqmagick.test.test_subcommands_quality_filter.MaxLengthFilterTestCase) ... ok test_some_truncated (seqmagick.test.test_subcommands_quality_filter.MaxLengthFilterTestCase) ... ok test_all_pass (seqmagick.test.test_subcommands_quality_filter.MinLengthFilterTestCase) ... ok test_none_pass (seqmagick.test.test_subcommands_quality_filter.MinLengthFilterTestCase) ... ok test_some_pass (seqmagick.test.test_subcommands_quality_filter.MinLengthFilterTestCase) ... ok test_1 (seqmagick.test.test_subcommands_quality_filter.PctAmbiguousFilterTestCase) ... ok test_10 (seqmagick.test.test_subcommands_quality_filter.PctAmbiguousFilterTestCase) ... ok test_none (seqmagick.test.test_subcommands_quality_filter.PctAmbiguousFilterTestCase) ... ok test_filter_trim (seqmagick.test.test_subcommands_quality_filter.PrimerBarcodeFilterTestCase) ... ok test_nowindow_fail (seqmagick.test.test_subcommands_quality_filter.QualityFilterTestCase) ... ok test_nowindow_pass (seqmagick.test.test_subcommands_quality_filter.QualityFilterTestCase) ... ok test_send (seqmagick.test.test_subcommands_quality_filter.RecordEventListenerTestCase) ... ok test_window_pass (seqmagick.test.test_subcommands_quality_filter.WindowQualityFilterTestCase) ... ok test_window_truncate_mid (seqmagick.test.test_subcommands_quality_filter.WindowQualityFilterTestCase) ... ok test_window_truncate_noseq (seqmagick.test.test_subcommands_quality_filter.WindowQualityFilterTestCase) ... ok test_nowarn (seqmagick.test.test_transform.CodonWarningTableTestCase) ... ok test_warn (seqmagick.test.test_transform.CodonWarningTableTestCase) ... ok test_cut_sequences (seqmagick.test.test_transform.CutTestCase) ... ok test_full_sequence (seqmagick.test.test_transform.CutTestCase) ... ok test_no_sequences (seqmagick.test.test_transform.CutTestCase) ... ok test_basic (seqmagick.test.test_transform.DashesCleanupTestCase) ... ok test_basic (seqmagick.test.test_transform.DropColumnsTestCase) ... ok test_multi (seqmagick.test.test_transform.DropColumnsTestCase) ... ok test_filter (seqmagick.test.test_transform.ExcludeFromFileTestCase) ... ok Try specifying some minus values. ... ok Test that -0 returns all sequences ... ok Specifying more sequences than are in input records should return ... ok Try specifying some values. ... ok test_zero (seqmagick.test.test_transform.HeadTestCase) ... ok test_filter (seqmagick.test.test_transform.IncludeFromFileTestCase) ... ok test_invalid (seqmagick.test.test_transform.IsolateRegionTestCase) ... ok test_middle (seqmagick.test.test_transform.IsolateRegionTestCase) ... ok test_no_isolation (seqmagick.test.test_transform.IsolateRegionTestCase) ... ok test_single_loc (seqmagick.test.test_transform.IsolateRegionTestCase) ... ok test_all_pass (seqmagick.test.test_transform.MinUngapLengthTestCase) ... ok test_none_pass (seqmagick.test.test_transform.MinUngapLengthTestCase) ... ok test_partial (seqmagick.test.test_transform.MinUngapLengthTestCase) ... ok test_multicut (seqmagick.test.test_transform.MultiCutTestCase) ... ok test_mask (seqmagick.test.test_transform.MultiMaskSequences) ... ok test_mask_whole (seqmagick.test.test_transform.MultiMaskSequences) ... ok test_filter_description (seqmagick.test.test_transform.NameExcludeTestCase) ... ok test_filter_id (seqmagick.test.test_transform.NameExcludeTestCase) ... ok test_filter_description (seqmagick.test.test_transform.NameIncludeTestCase) ... ok test_filter_id (seqmagick.test.test_transform.NameIncludeTestCase) ... ok test_modify (seqmagick.test.test_transform.NamePrefixTestCase) ... ok test_modify (seqmagick.test.test_transform.NameSuffixTestCase) ... ok test_pattern_replace_anchored_add_to_description (seqmagick.test.test_transform.PatternReplaceTestCase) ... ok test_pattern_replace_anchored_id_from_description (seqmagick.test.test_transform.PatternReplaceTestCase) ... ok test_pattern_replace_anchored_match (seqmagick.test.test_transform.PatternReplaceTestCase) ... ok test_pattern_replace_anchored_nomatch (seqmagick.test.test_transform.PatternReplaceTestCase) ... ok test_pattern_replace_anchored_remove_from_description (seqmagick.test.test_transform.PatternReplaceTestCase) ... ok test_pattern_replace_anchored_transform_id (seqmagick.test.test_transform.PatternReplaceTestCase) ... ok Substitutions are case insensitive ... ok Make sure capturing groups work ... ok test_pattern_replace_none (seqmagick.test.test_transform.PatternReplaceTestCase) ... ok test_pattern_replace_static (seqmagick.test.test_transform.PatternReplaceTestCase) ... ok test_multi_pass (seqmagick.test.test_transform.RecordBufferTestCase) ... ok test_single_pass (seqmagick.test.test_transform.RecordBufferTestCase) ... ok test_exclude (seqmagick.test.test_transform.SeqPatternTestCase) ... ok test_include (seqmagick.test.test_transform.SeqPatternTestCase) ... ok test_basic_squeeze (seqmagick.test.test_transform.SqueezeTestCase) ... ok test_gap_proportion (seqmagick.test.test_transform.SqueezeTestCase) ... ok Threshold of 0.001 - nothing should be squeezed. ... ok Try specifying some plus values. ... ok Test that +0 returns all sequences ... ok test_tail_1 (seqmagick.test.test_transform.TailTestCase) ... ok test_tail_2 (seqmagick.test.test_transform.TailTestCase) ... ok test_tail_3 (seqmagick.test.test_transform.TailTestCase) ... ok test_dna_protein_gap (seqmagick.test.test_transform.TranslateTestCase) ... ok test_dna_protein_gap_stop (seqmagick.test.test_transform.TranslateTestCase) ... ok test_dna_protein_nogap (seqmagick.test.test_transform.TranslateTestCase) ... ok test_dna_protein_nogap_stop (seqmagick.test.test_transform.TranslateTestCase) ... ok test_dash_gap (seqmagick.test.test_transform.UngapSequencesTestCase) ... ok test_dot_gap (seqmagick.test.test_transform.UngapSequencesTestCase) ... ok ---------------------------------------------------------------------- Ran 166 tests in 8.147s OK (SKIP=7) create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/seqmagick-0.8.4/debian/seqmagick /usr/lib/python3/dist-packages/setuptools/dist.py:475: UserWarning: The version specified ('') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. warnings.warn( running install running build running build_py running install_lib creating /build/seqmagick-0.8.4/debian/seqmagick/usr creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9 creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/transform.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/fileformat.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/__pycache__/fileformat.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/__pycache__/transform.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/__pycache__/__init__.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/__pycache__ creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands/common.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands/quality_filter.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands/info.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands/__pycache__/mogrify.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands/__pycache__/backtrans_align.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands/__pycache__/extract_ids.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands/__pycache__/convert.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands/__pycache__/info.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands/__pycache__/__init__.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands/__pycache__/primer_trim.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands/__pycache__/quality_filter.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands/__pycache__/common.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands/extract_ids.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands/backtrans_align.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands/convert.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands/__init__.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands/mogrify.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/subcommands/primer_trim.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/__init__.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/__pycache__/test_transform.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/__pycache__/test_subcommands_convert.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/__pycache__/test_subcommands_backtrans_align.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/__pycache__/test_subcommands_common.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/__pycache__/__init__.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/__pycache__/test_subcommands_quality_filter.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/__pycache__/test_primer_trim.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/test_primer_trim.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/test_subcommands_quality_filter.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/__init__.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/test_transform.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/test_subcommands_backtrans_align.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/test_subcommands_convert.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data/output2.nex -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data/input6.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data/input2.fasta.bz2 -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data/input3.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data/output5.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data/input4_ambig.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data/__pycache__/__init__.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data/output2_ungap_cut.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data/output2.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data/output4.nex -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data/input2.fasta.gz -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data/input2.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data/__init__.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data/output4.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data/output3.nex -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data/input1.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data/output3.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data/input5.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/data/output2.phy -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/__pycache__/test_info.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/__pycache__/__init__.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/__pycache__/test_convert.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/__pycache__/test_mogrify.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/__pycache__/test_extract_ids.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/test_info.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/test_convert.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/__init__.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/test_mogrify.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/integration/test_extract_ids.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/test/test_subcommands_common.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/scripts creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/scripts/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/scripts/__pycache__/__init__.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/scripts/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/scripts/__pycache__/cli.cpython-39.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/scripts/__pycache__ copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/scripts/__init__.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/scripts copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.9/build/seqmagick/scripts/cli.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/scripts byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/transform.py to transform.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/fileformat.py to fileformat.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands/common.py to common.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands/quality_filter.py to quality_filter.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands/info.py to info.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands/extract_ids.py to extract_ids.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands/backtrans_align.py to backtrans_align.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands/convert.py to convert.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands/__init__.py to __init__.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands/mogrify.py to mogrify.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/subcommands/primer_trim.py to primer_trim.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/__init__.py to __init__.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/test_primer_trim.py to test_primer_trim.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/test_subcommands_quality_filter.py to test_subcommands_quality_filter.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/__init__.py to __init__.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/test_transform.py to test_transform.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/test_subcommands_backtrans_align.py to test_subcommands_backtrans_align.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/test_subcommands_convert.py to test_subcommands_convert.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/data/__init__.py to __init__.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/test_info.py to test_info.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/test_convert.py to test_convert.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/__init__.py to __init__.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/test_mogrify.py to test_mogrify.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/integration/test_extract_ids.py to test_extract_ids.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/test/test_subcommands_common.py to test_subcommands_common.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/scripts/__init__.py to __init__.cpython-39.pyc byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick/scripts/cli.py to cli.cpython-39.pyc running install_egg_info running egg_info creating seqmagick.egg-info writing seqmagick.egg-info/PKG-INFO writing dependency_links to seqmagick.egg-info/dependency_links.txt writing entry points to seqmagick.egg-info/entry_points.txt writing requirements to seqmagick.egg-info/requires.txt writing top-level names to seqmagick.egg-info/top_level.txt writing manifest file 'seqmagick.egg-info/SOURCES.txt' reading manifest file 'seqmagick.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.png' found anywhere in distribution writing manifest file 'seqmagick.egg-info/SOURCES.txt' Copying seqmagick.egg-info to /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.9/dist-packages/seqmagick-0.0.0.egg-info Skipping SOURCES.txt running install_scripts Installing seqmagick script to /build/seqmagick-0.8.4/debian/seqmagick/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: generazione del pacchetto "seqmagick" in "../seqmagick_0.8.4-1_all.deb". dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../seqmagick_0.8.4-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/15137/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/15137/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/15137 and its subdirectories I: Current time: Sun Jul 11 12:50:52 +14 2021 I: pbuilder-time-stamp: 1625957452