I: pbuilder: network access will be disabled during build I: Current time: Sat Mar 26 06:44:33 -12 2022 I: pbuilder-time-stamp: 1648320273 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pdb2pqr_2.1.1+dfsg-7+deb11u1.dsc] I: copying [./pdb2pqr_2.1.1+dfsg.orig.tar.xz] I: copying [./pdb2pqr_2.1.1+dfsg-7+deb11u1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.4QPyPD76/trustedkeys.kbx': General error gpgv: Signature made Sat Feb 19 06:48:53 2022 -12 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pdb2pqr_2.1.1+dfsg-7+deb11u1.dsc dpkg-source: info: extracting pdb2pqr in pdb2pqr-2.1.1+dfsg dpkg-source: info: unpacking pdb2pqr_2.1.1+dfsg.orig.tar.xz dpkg-source: info: unpacking pdb2pqr_2.1.1+dfsg-7+deb11u1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-hashbangs.patch dpkg-source: info: applying no_privacy_breach_logo.patch dpkg-source: info: applying do_not_try_to_build_removed_js_target.patch dpkg-source: info: applying fix_hardening_no_relro dpkg-source: info: applying fix_no_debug_symbols_warning dpkg-source: info: applying spelling.patch dpkg-source: info: applying python3_PR516.patch dpkg-source: info: applying python3_scons.patch dpkg-source: info: applying python3_sundry.patch dpkg-source: info: applying python3_scriptbang.patch dpkg-source: info: applying use_pkg-config.patch dpkg-source: info: applying reproducible-build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/6420/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=5' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='a0f06d4b2b6c49a0945ebbaedd73a10b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='6420' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.JyRLjzWTWV/pbuilderrc_Szmk --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.JyRLjzWTWV/b1 --logfile b1/build.log pdb2pqr_2.1.1+dfsg-7+deb11u1.dsc' SUDO_GID='114' SUDO_UID='109' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux ff64a 5.10.0-12-arm64 #1 SMP Debian 5.10.103-1 (2022-03-07) aarch64 GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Aug 4 2021 bash -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash -rwxr-xr-x 1 root root 75880 Sep 22 2020 date -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd -rwxr-xr-x 1 root root 59912 Sep 22 2020 df -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir -rwxr-xr-x 1 root root 55012 Jan 20 08:10 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 22496 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 47492 Jan 20 08:10 findmnt -rwsr-xr-x 1 root root 26076 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 64212 Mar 2 2021 gzip -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln -rwxr-xr-x 1 root root 35068 Feb 7 2020 login -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls -rwxr-xr-x 1 root root 99940 Jan 20 08:10 lsblk -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 34408 Jan 20 08:10 more -rwsr-xr-x 1 root root 34400 Jan 20 08:10 mount -rwxr-xr-x 1 root root 9824 Jan 20 08:10 mountpoint -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 06:12 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Mar 20 21:28 sh -> dash -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty -rwsr-xr-x 1 root root 46704 Jan 20 08:10 su -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync -rwxr-xr-x 1 root root 340872 Feb 16 2021 tar -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch -rwxr-xr-x 1 root root 22496 Sep 22 2020 true -rwxr-xr-x 1 root root 9636 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 22108 Jan 20 08:10 umount -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir -rwxr-xr-x 1 root root 38512 Jan 20 08:10 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/6420/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-python, gfortran, swig, xmlto, openbabel, python3-dev, python3-numpy, scons (>= 3.1.1-4), dos2unix, pkg-config dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on swig; however: Package swig is not installed. pbuilder-satisfydepends-dummy depends on xmlto; however: Package xmlto is not installed. pbuilder-satisfydepends-dummy depends on openbabel; however: Package openbabel is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on scons (>= 3.1.1-4); however: Package scons is not installed. pbuilder-satisfydepends-dummy depends on dos2unix; however: Package dos2unix is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docbook-xml{a} docbook-xsl{a} dos2unix{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-10{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgfortran-10-dev{a} libgfortran5{a} libglib2.0-0{a} libicu67{a} libinchi1{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} libmaeparser1{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libopenbabel7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxml2-utils{a} libxrender1{a} libxslt1.1{a} m4{a} man-db{a} media-types{a} openbabel{a} pkg-config{a} po-debconf{a} python3{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pkg-resources{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} scons{a} sensible-utils{a} sgml-base{a} sgml-data{a} swig{a} swig4.0{a} ucf{a} xml-core{a} xmlto{a} xsltproc{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dblatex fop javascript-common libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl libpaper-utils lynx shared-mime-info wget xdg-user-dirs zip 0 packages upgraded, 103 newly installed, 0 to remove and 0 not upgraded. Need to get 56.3 MB of archives. After unpacking 198 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-8+deb11u1 [139 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf libpython3.9-minimal armhf 3.9.2-1 [790 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2+deb11u3 [78.2 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf python3.9-minimal armhf 3.9.2-1 [1630 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf libmpdec3 armhf 2.5.1-1 [74.9 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf libreadline8 armhf 8.1-1 [147 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf libpython3.9-stdlib armhf 3.9.2-1 [1608 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf python3.9 armhf 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf python3 armhf 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf sgml-base all 1.30 [15.1 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf ucf all 3.0043 [74.0 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 31 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 32 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 33 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 36 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 37 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 38 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 39 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 40 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 41 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7+deb11u1 [602 kB] Get: 42 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 43 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 44 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Get: 46 http://deb.debian.org/debian bullseye/main armhf python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 47 http://deb.debian.org/debian bullseye/main armhf python3-distutils all 3.9.2-1 [143 kB] Get: 48 http://deb.debian.org/debian bullseye/main armhf dh-python all 4.20201102+nmu1 [99.4 kB] Get: 49 http://deb.debian.org/debian bullseye/main armhf xml-core all 0.18+nmu1 [23.8 kB] Get: 50 http://deb.debian.org/debian bullseye/main armhf sgml-data all 2.0.11+nmu1 [179 kB] Get: 51 http://deb.debian.org/debian bullseye/main armhf docbook-xml all 4.5-9 [84.4 kB] Get: 52 http://deb.debian.org/debian bullseye/main armhf docbook-xsl all 1.79.2+dfsg-1 [1237 kB] Get: 53 http://deb.debian.org/debian bullseye/main armhf dos2unix armhf 7.4.1-1 [389 kB] Get: 54 http://deb.debian.org/debian bullseye/main armhf fonts-dejavu-core all 2.37-2 [1069 kB] Get: 55 http://deb.debian.org/debian bullseye/main armhf fontconfig-config all 2.13.1-4.2 [281 kB] Get: 56 http://deb.debian.org/debian bullseye/main armhf libgfortran5 armhf 10.2.1-6 [237 kB] Get: 57 http://deb.debian.org/debian bullseye/main armhf libgfortran-10-dev armhf 10.2.1-6 [289 kB] Get: 58 http://deb.debian.org/debian bullseye/main armhf gfortran-10 armhf 10.2.1-6 [7123 kB] Get: 59 http://deb.debian.org/debian bullseye/main armhf gfortran armhf 4:10.2.1-1 [1424 B] Get: 60 http://deb.debian.org/debian bullseye/main armhf libblas3 armhf 3.9.0-3 [109 kB] Get: 61 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB] Get: 62 http://deb.debian.org/debian bullseye/main armhf libmd0 armhf 1.0.3-3 [27.4 kB] Get: 63 http://deb.debian.org/debian bullseye/main armhf libbsd0 armhf 0.11.3-1 [103 kB] Get: 64 http://deb.debian.org/debian bullseye/main armhf libpng16-16 armhf 1.6.37-3 [277 kB] Get: 65 http://deb.debian.org/debian bullseye/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [357 kB] Get: 66 http://deb.debian.org/debian bullseye/main armhf libfontconfig1 armhf 2.13.1-4.2 [329 kB] Get: 67 http://deb.debian.org/debian bullseye/main armhf libpixman-1-0 armhf 0.40.0-1 [466 kB] Get: 68 http://deb.debian.org/debian bullseye/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 69 http://deb.debian.org/debian bullseye/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 70 http://deb.debian.org/debian bullseye/main armhf libxcb1 armhf 1.14-3 [136 kB] Get: 71 http://deb.debian.org/debian bullseye/main armhf libx11-data all 2:1.7.2-1 [311 kB] Get: 72 http://deb.debian.org/debian bullseye/main armhf libx11-6 armhf 2:1.7.2-1 [713 kB] Get: 73 http://deb.debian.org/debian bullseye/main armhf libxcb-render0 armhf 1.14-3 [110 kB] Get: 74 http://deb.debian.org/debian bullseye/main armhf libxcb-shm0 armhf 1.14-3 [101 kB] Get: 75 http://deb.debian.org/debian bullseye/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB] Get: 76 http://deb.debian.org/debian bullseye/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB] Get: 77 http://deb.debian.org/debian bullseye/main armhf libcairo2 armhf 1.16.0-5 [615 kB] Get: 78 http://deb.debian.org/debian bullseye/main armhf libexpat1-dev armhf 2.2.10-2+deb11u3 [126 kB] Get: 79 http://deb.debian.org/debian bullseye/main armhf libglib2.0-0 armhf 2.66.8-1 [1206 kB] Get: 80 http://deb.debian.org/debian bullseye/main armhf libinchi1 armhf 1.03+dfsg-3 [353 kB] Get: 81 http://deb.debian.org/debian bullseye/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 82 http://deb.debian.org/debian bullseye/main armhf libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 83 http://deb.debian.org/debian bullseye/main armhf libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 84 http://deb.debian.org/debian bullseye/main armhf liblapack3 armhf 3.9.0-3 [1651 kB] Get: 85 http://deb.debian.org/debian bullseye/main armhf libmaeparser1 armhf 1.2.4-1+b1 [75.7 kB] Get: 86 http://deb.debian.org/debian bullseye/main armhf libopenbabel7 armhf 3.1.1+dfsg-6 [2855 kB] Get: 87 http://deb.debian.org/debian bullseye/main armhf libpython3.9 armhf 3.9.2-1 [1447 kB] Get: 88 http://deb.debian.org/debian bullseye/main armhf libpython3.9-dev armhf 3.9.2-1 [3160 kB] Get: 89 http://deb.debian.org/debian bullseye/main armhf libpython3-dev armhf 3.9.2-3 [21.7 kB] Get: 90 http://deb.debian.org/debian bullseye/main armhf libxml2-utils armhf 2.9.10+dfsg-6.7+deb11u1 [107 kB] Get: 91 http://deb.debian.org/debian bullseye/main armhf libxslt1.1 armhf 1.1.34-4 [220 kB] Get: 92 http://deb.debian.org/debian bullseye/main armhf openbabel armhf 3.1.1+dfsg-6 [127 kB] Get: 93 http://deb.debian.org/debian bullseye/main armhf pkg-config armhf 0.29.2-1 [62.4 kB] Get: 94 http://deb.debian.org/debian bullseye/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [185 kB] Get: 95 http://deb.debian.org/debian bullseye/main armhf python3.9-dev armhf 3.9.2-1 [515 kB] Get: 96 http://deb.debian.org/debian bullseye/main armhf python3-dev armhf 3.9.2-3 [24.8 kB] Get: 97 http://deb.debian.org/debian bullseye/main armhf python3-pkg-resources all 52.0.0-4 [190 kB] Get: 98 http://deb.debian.org/debian bullseye/main armhf python3-numpy armhf 1:1.19.5-1 [2981 kB] Get: 99 http://deb.debian.org/debian bullseye/main armhf scons all 4.0.1+dfsg-2 [559 kB] Get: 100 http://deb.debian.org/debian bullseye/main armhf swig4.0 armhf 4.0.2-1 [1327 kB] Get: 101 http://deb.debian.org/debian bullseye/main armhf swig all 4.0.2-1 [330 kB] Get: 102 http://deb.debian.org/debian bullseye/main armhf xsltproc armhf 1.1.34-4 [123 kB] Get: 103 http://deb.debian.org/debian bullseye/main armhf xmlto armhf 0.0.28-2.1 [32.5 kB] Fetched 56.3 MB in 6s (9929 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8+deb11u1_armhf.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../1-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. 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Unpacking libpython3-stdlib:armhf (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20686 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_armhf.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sgml-base. Preparing to unpack .../01-sgml-base_1.30_all.deb ... Unpacking sgml-base (1.30) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/pdb2pqr-2.1.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pdb2pqr_2.1.1+dfsg-7+deb11u1_source.changes dpkg-buildpackage: info: source package pdb2pqr dpkg-buildpackage: info: source version 2.1.1+dfsg-7+deb11u1 dpkg-buildpackage: info: source distribution bullseye dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/pdb2pqr-2.1.1+dfsg' ( cd pdb2pka && \ if [ -e pMC_mult_wrap.cpp.saved ]; then mv pMC_mult_wrap.cpp.saved pMC_mult_wrap.cpp; fi && \ if [ -e pMC_mult.py.saved ]; then mv pMC_mult.py.saved pMC_mult.py; fi ) find . -name *.pyc -delete find . -name *.so -delete find . -name *.os -delete rm -f *.cgi .sconsign.dblite .variables.cache pdb2pqr.py html/server.html src/aconf.py dh_auto_clean make[1]: Leaving directory '/build/pdb2pqr-2.1.1+dfsg' dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/pdb2pqr-2.1.1+dfsg' dh_auto_configure ( cd pdb2pka && \ cp -a pMC_mult_wrap.cpp pMC_mult_wrap.cpp.saved && \ cp -a pMC_mult.py pMC_mult.py.saved && \ swig -c++ -python -o pMC_mult_wrap.cpp pMC_mult.i ) scons \ URL="http://localhost/pdb2pqr/" \ PREFIX="/usr/share/pdb2pqr" scons: Reading SConscript files ... not using opal scons: done reading SConscript files. scons: Building targets ... CopySubAction("pdb2pqr.py", "pdb2pqr.py.in") Chmod("pdb2pqr.py", 0755) CopySubAction("apbs_cgi.cgi", "apbs_cgi.py") Chmod("apbs_cgi.cgi", 0755) CopySubAction("visualize.cgi", "visualize.py") Chmod("visualize.cgi", 0755) CopySubAction("querystatus.cgi", "querystatus.py") Chmod("querystatus.cgi", 0755) CopySubAction("src/aconf.py", "src/aconf.py.in") CopySubAction("html/server.html", "html/server.html.in") Copy("pdb2pqr.cgi", "pdb2pqr.py") g++ -o pdb2pka/substruct/Algorithms.os -c -g -fPIC -I/usr/include/python3.9 -I/usr/include/arm-linux-gnueabihf/python3.9 -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include pdb2pka/substruct/Algorithms.cpp In file included from /usr/include/python3.9/numpy/ndarraytypes.h:1822, from /usr/include/python3.9/numpy/ndarrayobject.h:12, from /usr/include/python3.9/numpy/arrayobject.h:4, from pdb2pka/substruct/Algorithms.cpp:43: /usr/include/python3.9/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ pdb2pka/substruct/Algorithms.cpp: In function 'PyObject* initAlgorithms()': pdb2pka/substruct/Algorithms.cpp:333:1: warning: control reaches end of non-void function [-Wreturn-type] 333 | }; | ^ g++ -o pdb2pka/substruct/Algorithms.cpython-39-arm-linux-gnueabihf.so -Wl,-z,relro -Wl,-z,now -shared pdb2pka/substruct/Algorithms.os -L/usr/lib g++ -o pdb2pka/pMC_mult.os -c -g -fPIC -I/usr/include/python3.9 -I/usr/include/arm-linux-gnueabihf/python3.9 -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include pdb2pka/pMC_mult.cpp In file included from /usr/include/c++/10/vector:67, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult.cpp:6: /usr/include/c++/10/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/stl_vector.h:558:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 558 | std::__uninitialized_copy_a(__x.begin(), __x.end(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 559 | this->_M_impl._M_start, | ~~~~~~~~~~~~~~~~~~~~~~~ 560 | _M_get_Tp_allocator()); | ~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:66, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult.cpp:6: /usr/include/c++/10/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = double*; _Tp = double]': /usr/include/c++/10/bits/stl_uninitialized.h:323:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 323 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_uninitialized.h:323:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_uninitialized.h:325:37: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 325 | { return std::uninitialized_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult.cpp:6: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:66, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult.cpp:6: /usr/include/c++/10/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = double*]': /usr/include/c++/10/bits/stl_uninitialized.h:125:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 125 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_uninitialized.h:125:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | && __is_trivial(_ValueType2) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | && __assignable>:: | ~~~~~~~~~~~~~~~~~~ 150 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator]': /usr/include/c++/10/bits/stl_uninitialized.h:347:2: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 346 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult.cpp:6: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:66, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult.cpp:6: /usr/include/c++/10/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = double*]': /usr/include/c++/10/bits/stl_uninitialized.h:107:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 107 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_uninitialized.h:107:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_uninitialized.h:109:27: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 109 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = double*; _Tp = double]': /usr/include/c++/10/bits/stl_uninitialized.h:323:5: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 323 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_uninitialized.h:323:5: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 /usr/include/c++/10/bits/stl_uninitialized.h:325:37: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 325 | { return std::uninitialized_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from pdb2pka/pMC_mult.h:9, from pdb2pka/pMC_mult.cpp:6: /usr/include/c++/10/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = double*]': /usr/include/c++/10/bits/stl_algobase.h:560:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 560 | copy(_II __first, _II __last, _OI __result) | ^~~~ /usr/include/c++/10/bits/stl_algobase.h:560:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algobase.h:569:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 568 | return std::__copy_move_a<__is_move_iterator<_II>::__value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 | (std::__miter_base(__first), std::__miter_base(__last), __result); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:66, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult.cpp:6: /usr/include/c++/10/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]': /usr/include/c++/10/bits/stl_uninitialized.h:125:5: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 125 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_uninitialized.h:125:5: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | && __is_trivial(_ValueType2) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | && __assignable>:: | ~~~~~~~~~~~~~~~~~~ 150 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algobase.h:61, from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from pdb2pka/pMC_mult.h:9, from pdb2pka/pMC_mult.cpp:6: /usr/include/c++/10/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator >]': /usr/include/c++/10/bits/cpp_type_traits.h:544:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 544 | __miter_base(_Iterator __it) | ^~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from pdb2pka/pMC_mult.h:9, from pdb2pka/pMC_mult.cpp:6: /usr/include/c++/10/bits/stl_algobase.h: In function '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = double*]': /usr/include/c++/10/bits/stl_algobase.h:511:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 511 | __copy_move_a(_II __first, _II __last, _OI __result) | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algobase.h:511:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:66, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult.cpp:6: /usr/include/c++/10/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]': /usr/include/c++/10/bits/stl_uninitialized.h:107:9: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 107 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_uninitialized.h:107:9: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 /usr/include/c++/10/bits/stl_uninitialized.h:109:27: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 109 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algobase.h:67, from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from pdb2pka/pMC_mult.h:9, from pdb2pka/pMC_mult.cpp:6: /usr/include/c++/10/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector]': /usr/include/c++/10/bits/stl_iterator.h:1225:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1225 | __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it) | ^~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from pdb2pka/pMC_mult.h:9, from pdb2pka/pMC_mult.cpp:6: /usr/include/c++/10/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = double*]': /usr/include/c++/10/bits/stl_algobase.h:560:5: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 560 | copy(_II __first, _II __last, _OI __result) | ^~~~ /usr/include/c++/10/bits/stl_algobase.h:560:5: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/bits/stl_algobase.h:67, from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from pdb2pka/pMC_mult.h:9, from pdb2pka/pMC_mult.cpp:6: /usr/include/c++/10/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]': /usr/include/c++/10/bits/stl_iterator.h:2198:5: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 2198 | __miter_base(move_iterator<_Iterator> __it) | ^~~~~~~~~~~~ g++ -o pdb2pka/pMC_mult_wrap.os -c -g -fPIC -I/usr/include/python3.9 -I/usr/include/arm-linux-gnueabihf/python3.9 -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include pdb2pka/pMC_mult_wrap.cpp pdb2pka/pMC_mult_wrap.cpp: In function 'std::vector::iterator std_vector_Sl_double_Sg__erase__SWIG_0(std::vector*, std::vector::iterator)': pdb2pka/pMC_mult_wrap.cpp:4847:44: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 4847 | SWIGINTERN std::vector< double >::iterator std_vector_Sl_double_Sg__erase__SWIG_0(std::vector< double > *self,std::vector< double >::iterator pos){ return self->erase(pos); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp:4847:171: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 4847 | SWIGINTERN std::vector< double >::iterator std_vector_Sl_double_Sg__erase__SWIG_0(std::vector< double > *self,std::vector< double >::iterator pos){ return self->erase(pos); } | ^ pdb2pka/pMC_mult_wrap.cpp: In function 'std::vector::iterator std_vector_Sl_double_Sg__erase__SWIG_1(std::vector*, std::vector::iterator, std::vector::iterator)': pdb2pka/pMC_mult_wrap.cpp:4848:44: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 4848 | SWIGINTERN std::vector< double >::iterator std_vector_Sl_double_Sg__erase__SWIG_1(std::vector< double > *self,std::vector< double >::iterator first,std::vector< double >::iterator last){ return self->erase(first, last); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp:4848:44: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 pdb2pka/pMC_mult_wrap.cpp:4848:218: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 4848 | SWIGINTERN std::vector< double >::iterator std_vector_Sl_double_Sg__erase__SWIG_1(std::vector< double > *self,std::vector< double >::iterator first,std::vector< double >::iterator last){ return self->erase(first, last); } | ^ pdb2pka/pMC_mult_wrap.cpp: In function 'std::vector::iterator std_vector_Sl_double_Sg__insert__SWIG_0(std::vector*, std::vector::iterator, const value_type&)': pdb2pka/pMC_mult_wrap.cpp:4849:44: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 4849 | SWIGINTERN std::vector< double >::iterator std_vector_Sl_double_Sg__insert__SWIG_0(std::vector< double > *self,std::vector< double >::iterator pos,std::vector< double >::value_type const &x){ return self->insert(pos, x); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp:4849:219: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 4849 | SWIGINTERN std::vector< double >::iterator std_vector_Sl_double_Sg__insert__SWIG_0(std::vector< double > *self,std::vector< double >::iterator pos,std::vector< double >::value_type const &x){ return self->insert(pos, x); } | ^ pdb2pka/pMC_mult_wrap.cpp: In function 'void std_vector_Sl_double_Sg__insert__SWIG_1(std::vector*, std::vector::iterator, std::vector::size_type, const value_type&)': pdb2pka/pMC_mult_wrap.cpp:4850:17: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 4850 | SWIGINTERN void std_vector_Sl_double_Sg__insert__SWIG_1(std::vector< double > *self,std::vector< double >::iterator pos,std::vector< double >::size_type n,std::vector< double >::value_type const &x){ self->insert(pos, n, x); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp:4850:223: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 4850 | SWIGINTERN void std_vector_Sl_double_Sg__insert__SWIG_1(std::vector< double > *self,std::vector< double >::iterator pos,std::vector< double >::size_type n,std::vector< double >::value_type const &x){ self->insert(pos, n, x); } | ^ pdb2pka/pMC_mult_wrap.cpp: In function 'PyObject* _wrap_DoubleVector_erase__SWIG_0(PyObject*, Py_ssize_t, PyObject**)': pdb2pka/pMC_mult_wrap.cpp:8847:60: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 8847 | result = std_vector_Sl_double_Sg__erase__SWIG_0(arg1,arg2); | ^ pdb2pka/pMC_mult_wrap.cpp: In function 'PyObject* _wrap_DoubleVector_erase__SWIG_1(PyObject*, Py_ssize_t, PyObject**)': pdb2pka/pMC_mult_wrap.cpp:8897:65: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 8897 | result = std_vector_Sl_double_Sg__erase__SWIG_1(arg1,arg2,arg3); | ^ pdb2pka/pMC_mult_wrap.cpp: In function 'PyObject* _wrap_DoubleVector_insert__SWIG_0(PyObject*, Py_ssize_t, PyObject**)': pdb2pka/pMC_mult_wrap.cpp:9288:83: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 9288 | result = std_vector_Sl_double_Sg__insert__SWIG_0(arg1,arg2,(double const &)*arg3); | ^ pdb2pka/pMC_mult_wrap.cpp: In function 'PyObject* _wrap_DoubleVector_insert__SWIG_1(PyObject*, Py_ssize_t, PyObject**)': pdb2pka/pMC_mult_wrap.cpp:9341:42: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 9341 | std_vector_Sl_double_Sg__insert__SWIG_1(arg1,arg2,arg3,(double const &)*arg4); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/stl_vector.h:558:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 558 | std::__uninitialized_copy_a(__x.begin(), __x.end(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 559 | this->_M_impl._M_start, | ~~~~~~~~~~~~~~~~~~~~~~~ 560 | _M_get_Tp_allocator()); | ~~~~~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp: In function 'swig::SwigPyIterator* swig::make_output_iterator(const OutIter&, const OutIter&, const OutIter&, PyObject*) [with OutIter = __gnu_cxx::__normal_iterator >]': pdb2pka/pMC_mult_wrap.cpp:4163:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 4163 | return new SwigPyIteratorClosed_T(current, begin, end, seq); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp:4163:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 pdb2pka/pMC_mult_wrap.cpp: In function 'Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector; Difference = int]': pdb2pka/pMC_mult_wrap.cpp:3782:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 3782 | return new Sequence(sb, se); | ^~~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp: In function 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector; Difference = int; InputSeq = std::vector]': pdb2pka/pMC_mult_wrap.cpp:3828:33: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 3828 | self->insert(std::copy(is.begin(), isit, sb), isit, is.end()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp:3828:23: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 3828 | self->insert(std::copy(is.begin(), isit, sb), isit, is.end()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp:3828:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 pdb2pka/pMC_mult_wrap.cpp:3835:22: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 3835 | self->erase(sb,se); | ~~~~~~~~~~~^~~~~~~ pdb2pka/pMC_mult_wrap.cpp:3838:23: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 3838 | self->insert(sb, is.begin(), is.end()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp:3838:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 pdb2pka/pMC_mult_wrap.cpp: In function 'void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector; Difference = int]': pdb2pka/pMC_mult_wrap.cpp:3887:20: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 3887 | self->erase(sb,se); | ~~~~~~~~~~~^~~~~~~ pdb2pka/pMC_mult_wrap.cpp:3892:27: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 3892 | it = self->erase(it); | ~~~~~~~~~~~^~~~ pdb2pka/pMC_mult_wrap.cpp:3904:33: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 3904 | it = typename Sequence::reverse_iterator(self->erase((++it).base())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp:3904:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 pdb2pka/pMC_mult_wrap.cpp: In function 'void swig::erase(Sequence*, const typename Sequence::iterator&) [with Sequence = std::vector]': pdb2pka/pMC_mult_wrap.cpp:3758:15: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 3758 | seq->erase(position); | ~~~~~~~~~~^~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(std::vector<_Tp, _Alloc>::const_iterator) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/stl_vector.h:1430:7: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 1430 | erase(const_iterator __position) | ^~~~~ /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1431 | { return _M_erase(begin() + (__position - cbegin())); } | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(std::vector<_Tp, _Alloc>::const_iterator, std::vector<_Tp, _Alloc>::const_iterator) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/stl_vector.h:1457:7: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 1457 | erase(const_iterator __first, const_iterator __last) | ^~~~~ /usr/include/c++/10/bits/stl_vector.h:1457:7: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 130 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:154:19: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 154 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/stl_vector.h:1335:7: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 1335 | insert(const_iterator __position, size_type __n, const value_type& __x) | ^~~~~~ /usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1338 | _M_fill_insert(begin() + __offset, __n, __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp: In function 'swig::SwigPyIterator* swig::make_output_iterator(const OutIter&, PyObject*) [with OutIter = __gnu_cxx::__normal_iterator >]': pdb2pka/pMC_mult_wrap.cpp:4177:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 4177 | return new SwigPyIteratorOpen_T(current, seq); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::reverse_iterator std::vector<_Tp, _Alloc>::rbegin() [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/stl_vector.h:848:38: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 848 | { return reverse_iterator(end()); } | ^ /usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::reverse_iterator std::vector<_Tp, _Alloc>::rend() [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/stl_vector.h:866:40: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 866 | { return reverse_iterator(begin()); } | ^ /usr/include/c++/10/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::resize(std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::reserve(std::vector<_Tp, _Alloc>::size_type) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:85:36: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 85 | __tmp = _M_allocate_and_copy(__n, | ~~~~~~~~~~~~~~~~~~~~^~~~~ 86 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(this->_M_impl._M_start), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(this->_M_impl._M_finish)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:226:44: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 226 | pointer __tmp = _M_allocate_and_copy(__xlen, __x.begin(), | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 227 | __x.end()); | ~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:238:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 238 | std::_Destroy(std::copy(__x.begin(), __x.end(), begin()), | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 | end(), _M_get_Tp_allocator()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:238:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:66, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = double*; _Tp = double]': /usr/include/c++/10/bits/stl_uninitialized.h:323:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 323 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_uninitialized.h:323:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_uninitialized.h:325:37: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 325 | { return std::uninitialized_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp: In constructor 'swig::SwigPyIteratorClosed_T::SwigPyIteratorClosed_T(swig::SwigPyIteratorClosed_T::out_iterator, swig::SwigPyIteratorClosed_T::out_iterator, swig::SwigPyIteratorClosed_T::out_iterator, PyObject*) [with OutIterator = __gnu_cxx::__normal_iterator >; ValueType = double; FromOper = swig::from_oper]': pdb2pka/pMC_mult_wrap.cpp:4133:5: note: parameter passing for argument of type 'swig::SwigPyIteratorClosed_T<__gnu_cxx::__normal_iterator >, double, swig::from_oper >::out_iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 4133 | SwigPyIteratorClosed_T(out_iterator curr, out_iterator first, out_iterator last, PyObject *seq) | ^~~~~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp:4133:5: note: parameter passing for argument of type 'swig::SwigPyIteratorClosed_T<__gnu_cxx::__normal_iterator >, double, swig::from_oper >::out_iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 pdb2pka/pMC_mult_wrap.cpp:4133:5: note: parameter passing for argument of type 'swig::SwigPyIteratorClosed_T<__gnu_cxx::__normal_iterator >, double, swig::from_oper >::out_iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 pdb2pka/pMC_mult_wrap.cpp:4134:93: note: parameter passing for argument of type 'swig::SwigPyIteratorClosed_T<__gnu_cxx::__normal_iterator >, double, swig::from_oper >::out_iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 4134 | : SwigPyForwardIteratorClosed_T(curr, first, last, seq) | ^ pdb2pka/pMC_mult_wrap.cpp:4134:93: note: parameter passing for argument of type 'swig::SwigPyIteratorClosed_T<__gnu_cxx::__normal_iterator >, double, swig::from_oper >::out_iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/stl_vector.h:653:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 653 | vector(_InputIterator __first, _InputIterator __last, | ^~~~~~ /usr/include/c++/10/bits/stl_vector.h:653:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_vector.h:657:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 657 | _M_range_initialize(__first, __last, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 658 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::const_reverse_iterator std::vector<_Tp, _Alloc>::rbegin() const [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/stl_vector.h:857:44: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 857 | { return const_reverse_iterator(end()); } | ^ In file included from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = __gnu_cxx::__normal_iterator >]': /usr/include/c++/10/bits/stl_algobase.h:560:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 560 | copy(_II __first, _II __last, _OI __result) | ^~~~ /usr/include/c++/10/bits/stl_algobase.h:560:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algobase.h:560:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algobase.h:569:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 568 | return std::__copy_move_a<__is_move_iterator<_II>::__value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 | (std::__miter_base(__first), std::__miter_base(__last), __result); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/stl_vector.h:1379:2: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 1379 | insert(const_iterator __position, _InputIterator __first, | ^~~~~~ /usr/include/c++/10/bits/stl_vector.h:1379:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_vector.h:1379:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_vector.h:1383:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1383 | _M_insert_dispatch(begin() + __offset, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 1384 | __first, __last, __false_type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1383:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/10/bits/stl_algobase.h:67, from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/stl_iterator.h: In constructor 'std::reverse_iterator<_Iterator>::reverse_iterator(std::reverse_iterator<_Iterator>::iterator_type) [with _Iterator = __gnu_cxx::__normal_iterator >]': /usr/include/c++/10/bits/stl_iterator.h:167:7: note: parameter passing for argument of type 'std::reverse_iterator<__gnu_cxx::__normal_iterator > >::iterator_type' changed in GCC 7.1 167 | reverse_iterator(iterator_type __x) : current(__x) { } | ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 171 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/vector.tcc:175:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 175 | _GLIBCXX_MOVE3(__position + 1, end(), __position); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 184 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/vector.tcc:190:6: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 190 | _GLIBCXX_MOVE3(__last, end(), __first); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, _Arg&&) [with _Arg = double; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:395:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 395 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp: In constructor 'swig::SwigPyIteratorOpen_T::SwigPyIteratorOpen_T(swig::SwigPyIteratorOpen_T::out_iterator, PyObject*) [with OutIterator = __gnu_cxx::__normal_iterator >; ValueType = double; FromOper = swig::from_oper]': pdb2pka/pMC_mult_wrap.cpp:4059:5: note: parameter passing for argument of type 'swig::SwigPyIteratorOpen_T<__gnu_cxx::__normal_iterator >, double, swig::from_oper >::out_iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 4059 | SwigPyIteratorOpen_T(out_iterator curr, PyObject *seq) | ^~~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp:4060:59: note: parameter passing for argument of type 'swig::SwigPyIteratorOpen_T<__gnu_cxx::__normal_iterator >, double, swig::from_oper >::out_iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 4060 | : SwigPyForwardIteratorOpen_T(curr, seq) | ^ In file included from /usr/include/c++/10/vector:72, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_assign(std::size_t, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:267:13: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 267 | std::fill(begin(), end(), __val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = std::move_iterator; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/stl_vector.h:1508:2: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 1508 | _M_allocate_and_copy(size_type __n, | ^~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1508:2: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 /usr/include/c++/10/bits/stl_vector.h:1514:35: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 1514 | std::__uninitialized_copy_a(__first, __last, __result, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 1515 | _M_get_Tp_allocator()); | ~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(std::vector<_Tp, _Alloc>::size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/stl_vector.h:1508:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1508 | _M_allocate_and_copy(size_type __n, | ^~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1508:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_vector.h:1514:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1514 | std::__uninitialized_copy_a(__first, __last, __result, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 1515 | _M_get_Tp_allocator()); | ~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/ext/alloc_traits.h:34, from /usr/include/c++/10/bits/basic_string.h:40, from /usr/include/c++/10/string:55, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/alloc_traits.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = double]': /usr/include/c++/10/bits/alloc_traits.h:735:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 735 | _Destroy(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~ /usr/include/c++/10/bits/alloc_traits.h:735:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/alloc_traits.h:738:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 738 | _Destroy(__first, __last); | ~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:66, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = double*]': /usr/include/c++/10/bits/stl_uninitialized.h:125:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 125 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_uninitialized.h:125:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | && __is_trivial(_ValueType2) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | && __assignable>:: | ~~~~~~~~~~~~~~~~~~ 150 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp: In constructor 'swig::SwigPyForwardIteratorClosed_T::SwigPyForwardIteratorClosed_T(swig::SwigPyForwardIteratorClosed_T::out_iterator, swig::SwigPyForwardIteratorClosed_T::out_iterator, swig::SwigPyForwardIteratorClosed_T::out_iterator, PyObject*) [with OutIterator = __gnu_cxx::__normal_iterator >; ValueType = double; FromOper = swig::from_oper]': pdb2pka/pMC_mult_wrap.cpp:4085:5: note: parameter passing for argument of type 'swig::SwigPyForwardIteratorClosed_T<__gnu_cxx::__normal_iterator >, double, swig::from_oper >::out_iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 4085 | SwigPyForwardIteratorClosed_T(out_iterator curr, out_iterator first, out_iterator last, PyObject *seq) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp:4085:5: note: parameter passing for argument of type 'swig::SwigPyForwardIteratorClosed_T<__gnu_cxx::__normal_iterator >, double, swig::from_oper >::out_iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 pdb2pka/pMC_mult_wrap.cpp:4085:5: note: parameter passing for argument of type 'swig::SwigPyForwardIteratorClosed_T<__gnu_cxx::__normal_iterator >, double, swig::from_oper >::out_iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 pdb2pka/pMC_mult_wrap.cpp:4086:73: note: parameter passing for argument of type 'swig::SwigPyForwardIteratorClosed_T<__gnu_cxx::__normal_iterator >, double, swig::from_oper >::out_iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 4086 | : SwigPyIterator_T(curr, seq), begin(first), end(last) | ^ In file included from /usr/include/c++/10/vector:67, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::_M_range_initialize(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/stl_vector.h:1577:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1577 | _M_range_initialize(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1577:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_vector.h:1580:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1580 | const size_type __n = std::distance(__first, __last); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1585:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1585 | std::__uninitialized_copy_a(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1586 | this->_M_impl._M_start, | ~~~~~~~~~~~~~~~~~~~~~~~ 1587 | _M_get_Tp_allocator()); | ~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algobase.h:67, from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/stl_iterator.h: In constructor 'std::reverse_iterator<_Iterator>::reverse_iterator(std::reverse_iterator<_Iterator>::iterator_type) [with _Iterator = __gnu_cxx::__normal_iterator >]': /usr/include/c++/10/bits/stl_iterator.h:167:7: note: parameter passing for argument of type 'std::reverse_iterator<__gnu_cxx::__normal_iterator > >::iterator_type' changed in GCC 7.1 167 | reverse_iterator(iterator_type __x) : current(__x) { } | ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/cmath:42, from /usr/include/c++/10/math.h:36, from /usr/include/python3.9/pyport.h:205, from /usr/include/python3.9/Python.h:63, from pdb2pka/pMC_mult_wrap.cpp:178: /usr/include/c++/10/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator >]': /usr/include/c++/10/bits/cpp_type_traits.h:544:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 544 | __miter_base(_Iterator __it) | ^~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/stl_algobase.h: In function '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = __gnu_cxx::__normal_iterator >]': /usr/include/c++/10/bits/stl_algobase.h:511:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 511 | __copy_move_a(_II __first, _II __last, _OI __result) | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algobase.h:511:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algobase.h:511:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::_M_insert_dispatch(std::vector<_Tp, _Alloc>::iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator >; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/stl_vector.h:1662:2: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 1662 | _M_insert_dispatch(iterator __pos, _InputIterator __first, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1662:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_vector.h:1662:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 1665 | _M_range_insert(__pos, __first, __last, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 1666 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:66, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator]': /usr/include/c++/10/bits/stl_uninitialized.h:347:2: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 346 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/stl_algobase.h: In function '_OI std::move(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = __gnu_cxx::__normal_iterator >]': /usr/include/c++/10/bits/stl_algobase.h:593:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 593 | move(_II __first, _II __last, _OI __result) | ^~~~ /usr/include/c++/10/bits/stl_algobase.h:593:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algobase.h:593:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algobase.h:601:38: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 601 | return std::__copy_move_a(std::__miter_base(__first), | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 | std::__miter_base(__last), __result); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:66, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator]': /usr/include/c++/10/bits/stl_uninitialized.h:333:41: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 333 | return std::__uninitialized_copy_a(_GLIBCXX_MAKE_MOVE_ITERATOR(__first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | _GLIBCXX_MAKE_MOVE_ITERATOR(__last), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 | __result, __alloc); | ~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp: In constructor 'swig::SwigPyForwardIteratorOpen_T::SwigPyForwardIteratorOpen_T(swig::SwigPyForwardIteratorOpen_T::out_iterator, PyObject*) [with OutIterator = __gnu_cxx::__normal_iterator >; ValueType = double; FromOper = swig::from_oper]': pdb2pka/pMC_mult_wrap.cpp:4023:5: note: parameter passing for argument of type 'swig::SwigPyForwardIteratorOpen_T<__gnu_cxx::__normal_iterator >, double, swig::from_oper >::out_iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 4023 | SwigPyForwardIteratorOpen_T(out_iterator curr, PyObject *seq) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp:4024:48: note: parameter passing for argument of type 'swig::SwigPyForwardIteratorOpen_T<__gnu_cxx::__normal_iterator >, double, swig::from_oper >::out_iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 4024 | : SwigPyIterator_T(curr, seq) | ^ In file included from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/stl_algobase.h: In function 'void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = double]': /usr/include/c++/10/bits/stl_algobase.h:937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 937 | fill(_ForwardIterator __first, _ForwardIterator __last, const _Tp& __value) | ^~~~ /usr/include/c++/10/bits/stl_algobase.h:937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algobase.h:944:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 944 | std::__fill_a(__first, __last, __value); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:66, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = double*; _Tp = double]': /usr/include/c++/10/bits/stl_uninitialized.h:323:5: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 323 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_uninitialized.h:323:5: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 /usr/include/c++/10/bits/stl_uninitialized.h:325:37: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 325 | { return std::uninitialized_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/alloc_traits.h:33, from /usr/include/c++/10/ext/alloc_traits.h:34, from /usr/include/c++/10/bits/basic_string.h:40, from /usr/include/c++/10/string:55, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >]': /usr/include/c++/10/bits/stl_construct.h:171:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 171 | _Destroy(_ForwardIterator __first, _ForwardIterator __last) | ^~~~~~~~ /usr/include/c++/10/bits/stl_construct.h:171:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_construct.h:185:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 184 | std::_Destroy_aux<__has_trivial_destructor(_Value_type)>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __destroy(__first, __last); | ~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:66, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = double*]': /usr/include/c++/10/bits/stl_uninitialized.h:107:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 107 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_uninitialized.h:107:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_uninitialized.h:109:27: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 109 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp: In constructor 'swig::SwigPyIterator_T::SwigPyIterator_T(swig::SwigPyIterator_T::out_iterator, PyObject*) [with OutIterator = __gnu_cxx::__normal_iterator >]': pdb2pka/pMC_mult_wrap.cpp:3965:5: note: parameter passing for argument of type 'swig::SwigPyIterator_T<__gnu_cxx::__normal_iterator > >::out_iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 3965 | SwigPyIterator_T(out_iterator curr, PyObject *seq) | ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algobase.h:66, from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/stl_iterator_base_funcs.h: In function 'typename std::iterator_traits< >::difference_type std::distance(_InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >]': /usr/include/c++/10/bits/stl_iterator_base_funcs.h:138:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 138 | distance(_InputIterator __first, _InputIterator __last) | ^~~~~~~~ /usr/include/c++/10/bits/stl_iterator_base_funcs.h:138:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_iterator_base_funcs.h:141:29: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 141 | return std::__distance(__first, __last, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 142 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algobase.h:67, from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector]': /usr/include/c++/10/bits/stl_iterator.h:1225:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1225 | __niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it) | ^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = double*; _Container = std::vector]': /usr/include/c++/10/bits/stl_iterator.h:1225:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/stl_algobase.h: In function '_From std::__niter_wrap(_From, _To) [with _From = __gnu_cxx::__normal_iterator >; _To = double*]': /usr/include/c++/10/bits/stl_algobase.h:323:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 323 | __niter_wrap(_From __from, _To __res) | ^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 721 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/vector.tcc:727:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 727 | const size_type __n = std::distance(__first, __last); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:744:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 744 | std::copy(__first, __last, __position); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:751:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 751 | std::__uninitialized_copy_a(__mid, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 752 | this->_M_impl._M_finish, | ~~~~~~~~~~~~~~~~~~~~~~~~ 753 | _M_get_Tp_allocator()); | ~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:762:16: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 762 | std::copy(__first, __mid, __position); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:778:38: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 778 | = std::__uninitialized_copy_a(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 779 | __new_finish, | ~~~~~~~~~~~~~ 780 | _M_get_Tp_allocator()); | ~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/cmath:42, from /usr/include/c++/10/math.h:36, from /usr/include/python3.9/pyport.h:205, from /usr/include/python3.9/Python.h:63, from pdb2pka/pMC_mult_wrap.cpp:178: /usr/include/c++/10/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator >]': /usr/include/c++/10/bits/cpp_type_traits.h:544:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 544 | __miter_base(_Iterator __it) | ^~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/stl_algobase.h: In function '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = true; _II = __gnu_cxx::__normal_iterator >; _OI = __gnu_cxx::__normal_iterator >]': /usr/include/c++/10/bits/stl_algobase.h:511:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 511 | __copy_move_a(_II __first, _II __last, _OI __result) | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algobase.h:511:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algobase.h:511:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 pdb2pka/pMC_mult_wrap.cpp: In function 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector]': pdb2pka/pMC_mult_wrap.cpp:4462:18: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 4462 | seq->insert(seq->end(),(value_type)(*it)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/stl_algobase.h: In function 'void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = __gnu_cxx::__normal_iterator >; _Tp = double]': /usr/include/c++/10/bits/stl_algobase.h:913:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 913 | __fill_a(_FIte __first, _FIte __last, const _Tp& __value) | ^~~~~~~~ /usr/include/c++/10/bits/stl_algobase.h:913:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algobase.h:914:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 914 | { std::__fill_a1(__first, __last, __value); } | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:66, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]': /usr/include/c++/10/bits/stl_uninitialized.h:125:5: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 125 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_uninitialized.h:125:5: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | && __is_trivial(_ValueType2) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | && __assignable>:: | ~~~~~~~~~~~~~~~~~~ 150 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/alloc_traits.h:33, from /usr/include/c++/10/ext/alloc_traits.h:34, from /usr/include/c++/10/bits/basic_string.h:40, from /usr/include/c++/10/string:55, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/stl_construct.h: In static member function 'static void std::_Destroy_aux::__destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >]': /usr/include/c++/10/bits/stl_construct.h:161:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 161 | __destroy(_ForwardIterator, _ForwardIterator) { } | ^~~~~~~~~ /usr/include/c++/10/bits/stl_construct.h:161:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = double*]': /usr/include/c++/10/bits/stl_algobase.h:560:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 560 | copy(_II __first, _II __last, _OI __result) | ^~~~ /usr/include/c++/10/bits/stl_algobase.h:560:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algobase.h:569:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 568 | return std::__copy_move_a<__is_move_iterator<_II>::__value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 | (std::__miter_base(__first), std::__miter_base(__last), __result); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algobase.h:66, from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/stl_iterator_base_funcs.h: In function 'constexpr typename std::iterator_traits< >::difference_type std::__distance(_RandomAccessIterator, _RandomAccessIterator, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >]': /usr/include/c++/10/bits/stl_iterator_base_funcs.h:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 98 | __distance(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/include/c++/10/bits/stl_iterator_base_funcs.h:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, std::vector<_Tp, _Alloc>::value_type&&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/stl_vector.h:1293:7: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 1293 | insert(const_iterator __position, value_type&& __x) | ^~~~~~ /usr/include/c++/10/bits/stl_vector.h:1294:30: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 1294 | { return _M_insert_rval(__position, std::move(__x)); } | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/stl_algobase.h: In function 'void std::__fill_a1(__gnu_cxx::__normal_iterator<_Iterator, _Container>, __gnu_cxx::__normal_iterator<_Iterator, _Container>, const _Tp&) [with _Ite = double*; _Cont = std::vector; _Tp = double]': /usr/include/c++/10/bits/stl_algobase.h:899:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 899 | __fill_a1(::__gnu_cxx::__normal_iterator<_Ite, _Cont> __first, | ^~~~~~~~~ /usr/include/c++/10/bits/stl_algobase.h:899:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:66, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = double*]': /usr/include/c++/10/bits/stl_uninitialized.h:107:9: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 107 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_uninitialized.h:107:9: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 /usr/include/c++/10/bits/stl_uninitialized.h:109:27: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 109 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/stl_algobase.h: In function '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = double*]': /usr/include/c++/10/bits/stl_algobase.h:511:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 511 | __copy_move_a(_II __first, _II __last, _OI __result) | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algobase.h:511:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:72, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(std::vector<_Tp, _Alloc>::const_iterator, std::vector<_Tp, _Alloc>::value_type&&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:340:5: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 340 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:354:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 354 | _M_insert_aux(begin() + __n, std::move(__v)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 356 | _M_realloc_insert(begin() + __n, std::move(__v)); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = double*]': /usr/include/c++/10/bits/stl_algobase.h:560:5: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 560 | copy(_II __first, _II __last, _OI __result) | ^~~~ /usr/include/c++/10/bits/stl_algobase.h:560:5: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:72, from pdb2pka/pMC_mult.h:10, from pdb2pka/pMC_mult_wrap.cpp:2815: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algobase.h:67, from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]': /usr/include/c++/10/bits/stl_iterator.h:2198:5: note: parameter passing for argument of type 'std::move_iterator' changed in GCC 7.1 2198 | __miter_base(move_iterator<_Iterator> __it) | ^~~~~~~~~~~~ pdb2pka/pMC_mult_wrap.cpp: In member function 'ptrdiff_t swig::SwigPyIterator_T::distance(const swig::SwigPyIterator&) const [with OutIterator = __gnu_cxx::__normal_iterator >]': pdb2pka/pMC_mult_wrap.cpp:3990:22: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 3990 | return std::distance(current, iters->get_current()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algobase.h:66, from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/string:40, from /usr/include/c++/10/stdexcept:39, from pdb2pka/pMC_mult_wrap.cpp:2742: /usr/include/c++/10/bits/stl_iterator_base_funcs.h: In function 'typename std::iterator_traits< >::difference_type std::distance(_InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >]': /usr/include/c++/10/bits/stl_iterator_base_funcs.h:138:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 138 | distance(_InputIterator __first, _InputIterator __last) | ^~~~~~~~ /usr/include/c++/10/bits/stl_iterator_base_funcs.h:138:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_iterator_base_funcs.h:141:29: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 141 | return std::__distance(__first, __last, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 142 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_iterator_base_funcs.h: In function 'constexpr typename std::iterator_traits< >::difference_type std::__distance(_RandomAccessIterator, _RandomAccessIterator, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >]': /usr/include/c++/10/bits/stl_iterator_base_funcs.h:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 98 | __distance(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/include/c++/10/bits/stl_iterator_base_funcs.h:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 g++ -o pdb2pka/_pMC_mult.cpython-39-arm-linux-gnueabihf.so -Wl,-z,relro -Wl,-z,now -shared pdb2pka/pMC_mult.os pdb2pka/pMC_mult_wrap.os -L/usr/lib scons: done building targets. TARGETS: ['pdb2pqr.py', 'apbs_cgi.cgi', 'visualize.cgi', 'querystatus.cgi', 'src/aconf.py', 'html/server.html', 'pdb2pqr.cgi', 'pdb2pka/substruct/Algorithms.cpython-39-arm-linux-gnueabihf.so', 'pdb2pka/_pMC_mult.cpython-39-arm-linux-gnueabihf.so'] ======================== Configuration Parameters ======================== Version: 2.1.1 Install directory: /usr/share/pdb2pqr/ pdb2pka and ligand support: True Path to the website directory: http://localhost/pdb2pqr/ PDB2PQR jobs run via the web interface will be forked on the server. The preferred way to configure the build is by editing the file build_config.py Run scons with the python3 that you intend to use with pdb2pqr. For example: "scons" will setup pdb2pqr to be run with Debian default Python3 interpreter Run "scons install" to install pdb2pqr in /usr/share/pdb2pqr/ Run "scons basic-test" for a basic functionality test Run "scons advanced-test" for a single test of ligand and PROPKA support. Requires numpy and PDB2PKA support compiled. Run "scons complete-test" for a complete test of all functionality EXCEPT PDB2PKA. Requires numpy and PDB2PKA support compiled. Run "scons pdb2pka-test" for a test of PDB2PKA functionality. Requires numpy, PDB2PKA support compiled AND the APBS python3 libraries compiled and installed in the pdb2pka directory. To setup a web service create a symbolic link to /usr/share/pdb2pqr/ that enables you to view http://localhost/pdb2pqr/ after running "scons install" Run "scons msvs" to build Visual Studio projects for the Algorithms and pMC_mult modules. VS project generation is not well supported in scons. Resulting projects should build using NMAKE but cannot be used for debugging. The resulting projects will need to modified to use VS natively to compile the code or debug. Build succeeded. make[1]: Leaving directory '/build/pdb2pqr-2.1.1+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_install-arch make[1]: Entering directory '/build/pdb2pqr-2.1.1+dfsg' dh_install -a dos2unix debian/pdb2pqr/usr/share/pdb2pqr/propka30/propka.py dos2unix: converting file debian/pdb2pqr/usr/share/pdb2pqr/propka30/propka.py to Unix format... dos2unix debian/pdb2pqr/usr/share/pdb2pqr/src/psize.py dos2unix: converting file debian/pdb2pqr/usr/share/pdb2pqr/src/psize.py to Unix format... make[1]: Leaving directory '/build/pdb2pqr-2.1.1+dfsg' dh_install -Npdb2pqr dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/pdb2pqr-2.1.1+dfsg' dh_installchangelogs ChangeLog.md make[1]: Leaving directory '/build/pdb2pqr-2.1.1+dfsg' debian/rules override_dh_installexamples make[1]: Entering directory '/build/pdb2pqr-2.1.1+dfsg' dh_installexamples for bakerdoc in $( grep -l "http://agave.wustl.edu/css/baker.css" -R debian/pdb2pqr-doc/usr/share/doc/pdb2pqr/* ); do \ sed "s|href=\"http://agave.wustl.edu/css/baker.css\"|href=\"baker.css\"|g" -i $bakerdoc; done make[1]: Leaving directory '/build/pdb2pqr-2.1.1+dfsg' debian/rules override_dh_installman-arch make[1]: Entering directory '/build/pdb2pqr-2.1.1+dfsg' dh_installman -a xmlto -o debian/pdb2pqr/usr/share/man/man1/ man debian/pdb2pqr.1.xml Note: Writing pdb2pqr.1 xmlto -o debian/pdb2pqr/usr/share/man/man1/ man debian/psize.1.xml Note: Writing psize.1 xmlto -o debian/pdb2pqr/usr/share/man/man1/ man debian/propka.1.xml Note: Writing propka.1 make[1]: Leaving directory '/build/pdb2pqr-2.1.1+dfsg' dh_python3 dh_perl debian/rules override_dh_link-arch make[1]: Entering directory '/build/pdb2pqr-2.1.1+dfsg' dh_link -a dh_link -a usr/lib/pdb2pqr/pdb2pka/_pMC_mult.cpython-39-arm-linux-gnueabihf.so usr/share/pdb2pqr/pdb2pka/_pMC_mult.so dh_link -a usr/lib/pdb2pqr/pdb2pka/substruct/Algorithms.cpython-39-arm-linux-gnueabihf.so usr/share/pdb2pqr/pdb2pka/substruct/Algorithms.so make[1]: Leaving directory '/build/pdb2pqr-2.1.1+dfsg' dh_link -Npdb2pqr dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms-arch make[1]: Entering directory '/build/pdb2pqr-2.1.1+dfsg' dh_fixperms -a chmod 0644 debian/pdb2pqr/usr/share/pdb2pqr/main.py chmod 0644 debian/pdb2pqr/usr/share/pdb2pqr/main_cgi.py chmod 0644 debian/pdb2pqr/usr/share/pdb2pqr/pdb2pka/ligandclean/__init__.py chmod 0644 debian/pdb2pqr/usr/share/pdb2pqr/pdb2pka/pka_routines.py chmod 0644 debian/pdb2pqr/usr/share/pdb2pqr/pdb2pka/pKaIO_compat.py chmod 0644 debian/pdb2pqr/usr/share/pdb2pqr/pdb2pka/pKa_utility_functions_compat.py chmod 0644 debian/pdb2pqr/usr/share/pdb2pqr/src/errors.py chmod +x debian/pdb2pqr/usr/share/pdb2pqr/propka30/propka.py chmod +x debian/pdb2pqr/usr/share/pdb2pqr/src/psize.py make[1]: Leaving directory '/build/pdb2pqr-2.1.1+dfsg' dh_fixperms -Npdb2pqr dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pdb2pqr-doc' in '../pdb2pqr-doc_2.1.1+dfsg-7+deb11u1_all.deb'. dpkg-deb: building package 'pdb2pqr' in '../pdb2pqr_2.1.1+dfsg-7+deb11u1_armhf.deb'. dpkg-deb: building package 'pdb2pqr-dbgsym' in '../pdb2pqr-dbgsym_2.1.1+dfsg-7+deb11u1_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../pdb2pqr_2.1.1+dfsg-7+deb11u1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/6420 and its subdirectories I: Current time: Sat Mar 26 06:50:15 -12 2022 I: pbuilder-time-stamp: 1648320615