I: pbuilder: network access will be disabled during build
I: Current time: Tue Jun 18 03:46:08 -12 2024
I: pbuilder-time-stamp: 1718725568
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [macromoleculebuilder_3.2+dfsg-2+deb11u1.dsc]
I: copying [./macromoleculebuilder_3.2+dfsg.orig.tar.xz]
I: copying [./macromoleculebuilder_3.2+dfsg-2+deb11u1.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.xtUktM8Z/trustedkeys.kbx': General error
gpgv: Signature made Sun Jan  8 18:59:16 2023 -12
gpgv:                using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287
gpgv:                issuer "merkys@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./macromoleculebuilder_3.2+dfsg-2+deb11u1.dsc
dpkg-source: info: extracting macromoleculebuilder in macromoleculebuilder-3.2+dfsg
dpkg-source: info: unpacking macromoleculebuilder_3.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking macromoleculebuilder_3.2+dfsg-2+deb11u1.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/22243/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='armhf'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3 '
  DISTRIBUTION='bullseye'
  HOME='/root'
  HOST_ARCH='armhf'
  IFS=' 	
  '
  INVOCATION_ID='176da0b3fea344b9b63e2e5d892a9afd'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='22243'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UfsJNVfM/pbuilderrc_QUBE --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UfsJNVfM/b1 --logfile b1/build.log macromoleculebuilder_3.2+dfsg-2+deb11u1.dsc'
  SUDO_GID='113'
  SUDO_UID='107'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://10.0.0.15:3142/'
I: uname -a
  Linux cbxi4pro0 6.1.0-21-armmp #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux
I: ls -l /bin
  total 3580
  -rwxr-xr-x 1 root root 816764 Mar 27  2022 bash
  -rwxr-xr-x 3 root root  26052 Jul 20  2020 bunzip2
  -rwxr-xr-x 3 root root  26052 Jul 20  2020 bzcat
  lrwxrwxrwx 1 root root      6 Jul 20  2020 bzcmp -> bzdiff
  -rwxr-xr-x 1 root root   2225 Jul 20  2020 bzdiff
  lrwxrwxrwx 1 root root      6 Jul 20  2020 bzegrep -> bzgrep
  -rwxr-xr-x 1 root root   4877 Sep  4  2019 bzexe
  lrwxrwxrwx 1 root root      6 Jul 20  2020 bzfgrep -> bzgrep
  -rwxr-xr-x 1 root root   3775 Jul 20  2020 bzgrep
  -rwxr-xr-x 3 root root  26052 Jul 20  2020 bzip2
  -rwxr-xr-x 1 root root   9636 Jul 20  2020 bzip2recover
  lrwxrwxrwx 1 root root      6 Jul 20  2020 bzless -> bzmore
  -rwxr-xr-x 1 root root   1297 Jul 20  2020 bzmore
  -rwxr-xr-x 1 root root  26668 Sep 22  2020 cat
  -rwxr-xr-x 1 root root  43104 Sep 22  2020 chgrp
  -rwxr-xr-x 1 root root  38984 Sep 22  2020 chmod
  -rwxr-xr-x 1 root root  43112 Sep 22  2020 chown
  -rwxr-xr-x 1 root root  92616 Sep 22  2020 cp
  -rwxr-xr-x 1 root root  75524 Dec 10  2020 dash
  -rwxr-xr-x 1 root root  75880 Sep 22  2020 date
  -rwxr-xr-x 1 root root  55436 Sep 22  2020 dd
  -rwxr-xr-x 1 root root  59912 Sep 22  2020 df
  -rwxr-xr-x 1 root root  96764 Sep 22  2020 dir
  -rwxr-xr-x 1 root root  55012 Jan 20  2022 dmesg
  lrwxrwxrwx 1 root root      8 Nov  6  2019 dnsdomainname -> hostname
  lrwxrwxrwx 1 root root      8 Nov  6  2019 domainname -> hostname
  -rwxr-xr-x 1 root root  22508 Sep 22  2020 echo
  -rwxr-xr-x 1 root root     28 Jan 24  2023 egrep
  -rwxr-xr-x 1 root root  22496 Sep 22  2020 false
  -rwxr-xr-x 1 root root     28 Jan 24  2023 fgrep
  -rwxr-xr-x 1 root root  47492 Jan 20  2022 findmnt
  -rwsr-xr-x 1 root root  26076 Feb 26  2021 fusermount
  -rwxr-xr-x 1 root root 124508 Jan 24  2023 grep
  -rwxr-xr-x 2 root root   2346 Apr  9  2022 gunzip
  -rwxr-xr-x 1 root root   6447 Apr  9  2022 gzexe
  -rwxr-xr-x 1 root root  64212 Apr  9  2022 gzip
  -rwxr-xr-x 1 root root  13784 Nov  6  2019 hostname
  -rwxr-xr-x 1 root root  43180 Sep 22  2020 ln
  -rwxr-xr-x 1 root root  35068 Feb  7  2020 login
  -rwxr-xr-x 1 root root  96764 Sep 22  2020 ls
  -rwxr-xr-x 1 root root  99940 Jan 20  2022 lsblk
  -rwxr-xr-x 1 root root  51408 Sep 22  2020 mkdir
  -rwxr-xr-x 1 root root  43184 Sep 22  2020 mknod
  -rwxr-xr-x 1 root root  30780 Sep 22  2020 mktemp
  -rwxr-xr-x 1 root root  34408 Jan 20  2022 more
  -rwsr-xr-x 1 root root  34400 Jan 20  2022 mount
  -rwxr-xr-x 1 root root   9824 Jan 20  2022 mountpoint
  -rwxr-xr-x 1 root root  88524 Sep 22  2020 mv
  lrwxrwxrwx 1 root root      8 Nov  6  2019 nisdomainname -> hostname
  lrwxrwxrwx 1 root root     14 Dec 16  2021 pidof -> /sbin/killall5
  -rwxr-xr-x 1 root root  26652 Sep 22  2020 pwd
  lrwxrwxrwx 1 root root      4 Mar 27  2022 rbash -> bash
  -rwxr-xr-x 1 root root  30740 Sep 22  2020 readlink
  -rwxr-xr-x 1 root root  43104 Sep 22  2020 rm
  -rwxr-xr-x 1 root root  30732 Sep 22  2020 rmdir
  -rwxr-xr-x 1 root root  14144 Sep 27  2020 run-parts
  -rwxr-xr-x 1 root root  76012 Dec 22  2018 sed
  lrwxrwxrwx 1 root root      4 Jun  6 21:27 sh -> dash
  -rwxr-xr-x 1 root root  22532 Sep 22  2020 sleep
  -rwxr-xr-x 1 root root  55360 Sep 22  2020 stty
  -rwsr-xr-x 1 root root  46704 Jan 20  2022 su
  -rwxr-xr-x 1 root root  22532 Sep 22  2020 sync
  -rwxr-xr-x 1 root root 340872 Jan 19 21:59 tar
  -rwxr-xr-x 1 root root   9808 Sep 27  2020 tempfile
  -rwxr-xr-x 1 root root  67696 Sep 22  2020 touch
  -rwxr-xr-x 1 root root  22496 Sep 22  2020 true
  -rwxr-xr-x 1 root root   9636 Feb 26  2021 ulockmgr_server
  -rwsr-xr-x 1 root root  22108 Jan 20  2022 umount
  -rwxr-xr-x 1 root root  22520 Sep 22  2020 uname
  -rwxr-xr-x 2 root root   2346 Apr  9  2022 uncompress
  -rwxr-xr-x 1 root root  96764 Sep 22  2020 vdir
  -rwxr-xr-x 1 root root  38512 Jan 20  2022 wdctl
  lrwxrwxrwx 1 root root      8 Nov  6  2019 ypdomainname -> hostname
  -rwxr-xr-x 1 root root   1984 Apr  9  2022 zcat
  -rwxr-xr-x 1 root root   1678 Apr  9  2022 zcmp
  -rwxr-xr-x 1 root root   5898 Apr  9  2022 zdiff
  -rwxr-xr-x 1 root root     29 Apr  9  2022 zegrep
  -rwxr-xr-x 1 root root     29 Apr  9  2022 zfgrep
  -rwxr-xr-x 1 root root   2081 Apr  9  2022 zforce
  -rwxr-xr-x 1 root root   8049 Apr  9  2022 zgrep
  -rwxr-xr-x 1 root root   2206 Apr  9  2022 zless
  -rwxr-xr-x 1 root root   1842 Apr  9  2022 zmore
  -rwxr-xr-x 1 root root   4577 Apr  9  2022 znew
I: user script /srv/workspace/pbuilder/22243/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: asciidoc-base, cmake, debhelper-compat (= 12), docbook-xml, docbook-xsl, libopenmm-dev, libseqan2-dev, libsimbody-dev, libsimtkmolmodel-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19454 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on asciidoc-base; however:
  Package asciidoc-base is not installed.
 pbuilder-satisfydepends-dummy depends on cmake; however:
  Package cmake is not installed.
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on docbook-xml; however:
  Package docbook-xml is not installed.
 pbuilder-satisfydepends-dummy depends on docbook-xsl; however:
  Package docbook-xsl is not installed.
 pbuilder-satisfydepends-dummy depends on libopenmm-dev; however:
  Package libopenmm-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libseqan2-dev; however:
  Package libseqan2-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libsimbody-dev; however:
  Package libsimbody-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libsimtkmolmodel-dev; however:
  Package libsimtkmolmodel-dev is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  asciidoc-base{a} asciidoc-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docbook-xml{a} docbook-xsl{a} dwz{a} file{a} freeglut3{a} freeglut3-dev{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libcurl4{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgbm1{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libice-dev{a} libice6{a} libicu67{a} libjsoncpp24{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} libllvm11{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmmdb2-0{a} libmpdec3{a} libncurses6{a} libnghttp2-14{a} libopengl-dev{a} libopengl0{a} libpipeline1{a} libprocps8{a} libpsl5{a} libpthread-stubs0-dev{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsigsegv2{a} libsimbody-dev{a} libsimbody3.6{a} libsimtkmolmodel-dev{a} libsimtkmolmodel3.0{a} libsm-dev{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libvulkan1{a} libwayland-client0{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxi-dev{a} libxi6{a} libxml2{a} libxml2-utils{a} libxmu-dev{a} libxmu-headers{a} libxmu6{a} libxshmfence1{a} libxslt1.1{a} libxt-dev{a} libxt6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sgml-data{a} x11-common{a} x11proto-dev{a} x11proto-input-dev{a} x11proto-xext-dev{a} xml-core{a} xorg-sgml-doctools{a} xsltproc{a} xtrans-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx mesa-vulkan-drivers psmisc publicsuffix wget xmlto 
0 packages upgraded, 162 newly installed, 0 to remove and 0 not upgraded.
Need to get 81.2 MB of archives. After unpacking 315 MB will be used.
The following packages have unmet dependencies:
 pbuilder-satisfydepends-dummy : Depends: libopenmm-dev which is a virtual package and is not provided by any available package

Unable to resolve dependencies!  Giving up...
The following NEW packages will be installed:
  asciidoc-base{a} asciidoc-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docbook-xml{a} docbook-xsl{a} dwz{a} file{a} freeglut3{a} freeglut3-dev{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libcurl4{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgbm1{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libice-dev{a} libice6{a} libicu67{a} libjsoncpp24{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} libllvm11{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmmdb2-0{a} libmpdec3{a} libncurses6{a} libnghttp2-14{a} libopengl-dev{a} libopengl0{a} libpipeline1{a} libprocps8{a} libpsl5{a} libpthread-stubs0-dev{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsigsegv2{a} libsimbody-dev{a} libsimbody3.6{a} libsimtkmolmodel-dev{a} libsimtkmolmodel3.0{a} libsm-dev{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libvulkan1{a} libwayland-client0{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxi-dev{a} libxi6{a} libxml2{a} libxml2-utils{a} libxmu-dev{a} libxmu-headers{a} libxmu6{a} libxshmfence1{a} libxslt1.1{a} libxt-dev{a} libxt6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sgml-data{a} x11-common{a} x11proto-dev{a} x11proto-input-dev{a} x11proto-xext-dev{a} xml-core{a} xorg-sgml-doctools{a} xsltproc{a} xtrans-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx mesa-vulkan-drivers psmisc publicsuffix wget xmlto 
0 packages upgraded, 162 newly installed, 0 to remove and 0 not upgraded.
Need to get 81.2 MB of archives. After unpacking 315 MB will be used.
Abort.
E: pbuilder-satisfydepends failed.
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/22243 and its subdirectories